Query 023614
Match_columns 280
No_of_seqs 137 out of 442
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p51_A SPCC18.06C protein; DED 100.0 1.9E-93 6.5E-98 666.4 25.5 268 1-278 8-275 (333)
2 4gmj_B CCR4-NOT transcription 100.0 3.3E-93 1.1E-97 656.8 24.6 265 4-278 1-265 (285)
3 2d5r_A CCR4-NOT transcription 100.0 8.3E-93 2.8E-97 643.8 24.3 252 15-275 1-252 (252)
4 1uoc_A POP2; hydrolase, DEDD n 100.0 1.4E-92 4.9E-97 652.4 25.2 262 9-278 9-288 (289)
5 3d45_A Poly(A)-specific ribonu 100.0 3.4E-60 1.2E-64 467.9 19.3 249 16-273 2-418 (507)
6 2a1r_A Poly(A)-specific ribonu 100.0 7.9E-51 2.7E-55 394.0 17.1 234 17-259 1-398 (430)
7 3v9w_A Ribonuclease T; DEDD nu 98.9 3.1E-08 1E-12 87.3 13.6 189 27-259 26-222 (235)
8 1w0h_A 3'-5' exonuclease ERI1; 98.8 5.6E-07 1.9E-11 77.1 17.6 174 39-259 11-196 (204)
9 2f96_A Ribonuclease T; RNAse, 98.7 1.2E-07 4.1E-12 83.0 12.6 182 31-259 22-214 (224)
10 2p1j_A POLIII, DNA polymerase 98.6 1.1E-06 3.9E-11 74.7 15.4 164 35-257 9-175 (186)
11 3cg7_A CRN-4, cell death-relat 98.6 1.3E-06 4.5E-11 80.6 16.6 173 39-258 20-209 (308)
12 1zbh_A 3'-5' exonuclease ERI1; 98.6 7.1E-06 2.4E-10 75.2 20.5 175 38-259 78-264 (299)
13 2gui_A DNA polymerase III epsi 98.6 8.8E-07 3E-11 75.5 12.8 172 38-257 9-184 (194)
14 2xri_A ERI1 exoribonuclease 3; 98.5 5.7E-06 2E-10 72.5 17.9 171 39-258 32-214 (224)
15 3mxm_B Three prime repair exon 98.5 1.5E-06 5.1E-11 77.5 13.0 180 39-260 13-217 (242)
16 1y97_A Three prime repair exon 98.4 5.2E-06 1.8E-10 72.9 13.7 175 38-259 10-211 (238)
17 1zbu_A ERI-1 homolog, 3'-5' ex 98.4 8E-06 2.7E-10 76.8 15.8 175 38-259 128-314 (349)
18 2qxf_A Exodeoxyribonuclease I; 98.4 3.9E-06 1.3E-10 82.1 14.1 177 35-257 6-200 (482)
19 3u3y_B Three prime repair exon 98.4 4E-06 1.4E-10 77.9 12.9 179 39-260 13-217 (314)
20 1wlj_A Interferon stimulated g 98.0 4.5E-05 1.5E-09 64.9 11.3 158 37-259 4-170 (189)
21 2igi_A Oligoribonuclease; RNAs 98.0 0.00012 4E-09 61.5 13.7 170 37-259 4-178 (180)
22 2gbz_A Oligoribonuclease; ORN, 97.6 0.00088 3E-08 57.1 12.6 171 36-259 7-182 (194)
23 3tr8_A Oligoribonuclease; tran 97.5 0.0039 1.3E-07 53.4 15.6 174 36-261 7-184 (186)
24 2kfn_A Klenow fragment of DNA 96.0 0.17 5.8E-06 50.4 15.7 86 157-260 86-195 (605)
25 3saf_A Exosome component 10; e 91.8 2.3 8E-05 40.6 13.1 85 158-259 179-278 (428)
26 2hbj_A Exosome complex exonucl 66.2 18 0.00061 34.0 8.1 85 158-259 156-255 (410)
27 1yt3_A Ribonuclease D, RNAse D 46.6 61 0.0021 29.6 8.0 84 159-259 72-171 (375)
28 1vk0_A Hypothetical protein; h 41.8 46 0.0016 28.1 5.9 82 158-256 105-205 (206)
29 2fi0_A Conserved domain protei 33.1 36 0.0012 24.4 3.3 37 120-156 22-75 (81)
30 4i4d_A Peptide synthetase NRPS 27.9 76 0.0026 22.6 4.4 34 224-258 25-61 (93)
31 1dny_A Non-ribosomal peptide s 27.5 61 0.0021 23.2 3.8 34 224-258 23-59 (91)
32 1jf8_A Arsenate reductase; ptp 25.2 44 0.0015 25.9 2.8 31 118-148 43-73 (131)
33 3cym_A Uncharacterized protein 24.7 45 0.0015 31.6 3.2 79 163-259 95-188 (440)
34 3nuf_A PRD-containing transcri 22.8 53 0.0018 25.8 2.7 19 173-191 59-77 (119)
35 2ogf_A Hypothetical protein MJ 20.7 41 0.0014 26.5 1.7 43 166-209 24-70 (122)
36 2oo9_A E3 ubiquitin-protein li 20.4 52 0.0018 21.6 1.9 19 121-139 5-23 (46)
37 3pv8_A DNA polymerase I; DNA p 20.2 1.8E+02 0.0061 28.6 6.6 84 159-259 79-182 (592)
No 1
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=100.00 E-value=1.9e-93 Score=666.36 Aligned_cols=268 Identities=44% Similarity=0.731 Sum_probs=248.6
Q ss_pred CCCCCCCCCCCCCceEEecCccCHHHHHHHHHHHhhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccce
Q 023614 1 MSDVPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLI 80 (280)
Q Consensus 1 ~~~~~~~~~~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~ii 80 (280)
|++++.|+++++.+.|||||++||++||+.|+++|++|+||||||||||++++|.+.++++. ++||+++|+|||.++||
T Consensus 8 ~~~~~~~~~~~~~~~IreVw~~Nleee~~~Ir~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~-e~~Yq~lR~NVd~l~iI 86 (333)
T 2p51_A 8 YPALGVDGISSQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSD-DYHYQTLRANVDSLKII 86 (333)
T ss_dssp ----------CCSCSEEEECTTTHHHHHHHHHHHTTTSCEEEEEEECCCCCCCCCSCCSSSH-HHHHHHHHHHHHHSCCC
T ss_pred CCccccCCCCCCCcEEEEehHhHHHHHHHHHHHHHhhCCEEEEeeeccccccccccccCCCH-HHHHHHHHHhhhhccce
Confidence 56677888889999999999999999999999999999999999999999999998898877 99999999999999999
Q ss_pred eeeeeeccCCCCCCCCCCCCCceEEEEeccccCcCcCCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCC
Q 023614 81 QIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNK 160 (280)
Q Consensus 81 QlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~ 160 (280)
|||||+++++|+.|. .+++|||||+ |++.+|+|+++||+||+++||||+|++++||++.+|+|+|++||||+++
T Consensus 87 QlGLt~fd~~G~~p~-----~~~twqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~elL~~SGLvl~~ 160 (333)
T 2p51_A 87 QIGLALSDEEGNAPV-----EACTWQFNFT-FNLQDDMYAPESIELLTKSGIDFKKHQEVGIEPADFAELLIGSGLVLQE 160 (333)
T ss_dssp EEEEEEECTTSCCCT-----TCSEEEEEBC-CCTTTSCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTTTSSSCT
T ss_pred EEEEEEEccCCCCCC-----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCcccCC
Confidence 999999999999985 3799999999 9999999999999999999999999999999999999999999999999
Q ss_pred CceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCCCccch
Q 023614 161 DVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQA 240 (280)
Q Consensus 161 ~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g~~hqA 240 (280)
+|+||+|||+||||||+|+|||++||+++++|+++|+.+||+ |||||||++.|.++++||++||+.|+|+| +|++|||
T Consensus 161 ~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~FP~-iYD~K~l~~~~~~l~ggL~~lA~~L~v~R-ig~~HqA 238 (333)
T 2p51_A 161 EVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPK-NYDIKYIMKSVLNNSKGLQDIADDLQIHR-IGPQHQA 238 (333)
T ss_dssp TCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHHSSS-EEEHHHHHTTTTCCCCCHHHHHHHTTCCC-CSCTTSH
T ss_pred CceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHHCcc-hhhHHHHHHHhccccCCHHHHHHHcCCCc-cCcchhh
Confidence 999999999999999999999999999999999999999998 99999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHHHHHHHHhhCCCccccccccceEecCCCC
Q 023614 241 GSDSLLTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 278 (280)
Q Consensus 241 GsDs~lT~~~F~~l~~~~~~~~~~~~~~~g~i~Gl~~~ 278 (280)
|||||||++||+||++.+|++. +.++++|+||||+..
T Consensus 239 GsDSlLT~~~F~kl~~~~f~~~-~~~~~~g~l~Gl~~~ 275 (333)
T 2p51_A 239 GSDALLTARIFFEIRSRYFDGS-IDSRMLNQLYGLGST 275 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-CCGGGTTCCTTC---
T ss_pred hhHHHHHHHHHHHHHHHhcCCC-chhhhCCEEeccCcC
Confidence 9999999999999999999775 578999999999865
No 2
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.3e-93 Score=656.82 Aligned_cols=265 Identities=46% Similarity=0.767 Sum_probs=249.4
Q ss_pred CCCCCCCCCCceEEecCccCHHHHHHHHHHHhhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeee
Q 023614 4 VPPPQPPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIG 83 (280)
Q Consensus 4 ~~~~~~~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlG 83 (280)
||+++.. ....|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++ |+||+++|+|||.+++||+|
T Consensus 1 ~p~~~~~-~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~-d~~Y~~lr~nvd~l~iIQlG 78 (285)
T 4gmj_B 1 MPAATVD-HSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNA-DYQYQLLRCNVDLLKIIQLG 78 (285)
T ss_dssp ----------CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTST-THHHHHHHHHHTTSCCCEEE
T ss_pred CCCCcCC-CCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCH-HHHHHHHHHHHHhhcceeEE
Confidence 4555433 356899999999999999999999999999999999999999999888888 99999999999999999999
Q ss_pred eeeccCCCCCCCCCCCCCceEEEEeccccCcCcCCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCCCce
Q 023614 84 LTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVT 163 (280)
Q Consensus 84 lt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~~v~ 163 (280)
||+|+++|+.|. .+++|||||+ |++++|+|+++||+||++|||||+|+.++||++.+|+|+|++||++++++++
T Consensus 79 Lt~f~~~g~~p~-----~~~~wqFNF~-f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~ 152 (285)
T 4gmj_B 79 LTFMNEQGEYPP-----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVK 152 (285)
T ss_dssp EEEECTTSCCCS-----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCE
T ss_pred EEeeccCCCcCC-----CeeEEEEEEE-eccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCc
Confidence 999999999985 3799999999 9999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCCCccchhhh
Q 023614 164 WVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSD 243 (280)
Q Consensus 164 Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g~~hqAGsD 243 (280)
||+|||+||||||+|+|||++||+++.+|+++|+.+||. |||||||++.|.++++||++||+.|+|+| +|++||||||
T Consensus 153 WvtfH~~yDf~yL~k~lt~~~LP~~~~eF~~~l~~~FP~-vYD~K~l~~~~~~l~ggL~~lA~~L~v~r-~g~~HqAGsD 230 (285)
T 4gmj_B 153 WLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSD 230 (285)
T ss_dssp EEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCSC-EEEHHHHGGGSTTCCSCHHHHHHHTTCCC-CSCTTSHHHH
T ss_pred eEEecchhhHHHHHHHHhCCCCCCCHHHHHHHHHHHCch-hhhHHHHHHhccccCChHHHHHHhCCCCC-CCCCCcchhH
Confidence 999999999999999999999999999999999999999 99999999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHhhCCCccccccccceEecCCCC
Q 023614 244 SLLTLHAFLKIKDKHFGNEYELQKYANVLHGLELL 278 (280)
Q Consensus 244 s~lT~~~F~~l~~~~~~~~~~~~~~~g~i~Gl~~~ 278 (280)
||||+.||+||+++||++.++.++|+|+||||+..
T Consensus 231 SllT~~~F~kl~~~~f~~~~~~~~~~g~l~Glg~~ 265 (285)
T 4gmj_B 231 SLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSG 265 (285)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHHHHTTCCTTSSTT
T ss_pred HHHHHHHHHHHHHHHhcCCcchHHhCCEEeccCCC
Confidence 99999999999999999887788999999999864
No 3
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=100.00 E-value=8.3e-93 Score=643.75 Aligned_cols=252 Identities=48% Similarity=0.810 Sum_probs=244.9
Q ss_pred eEEecCccCHHHHHHHHHHHhhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCC
Q 023614 15 LIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLP 94 (280)
Q Consensus 15 ~i~eVw~~Nl~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p 94 (280)
.|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++ ++||+++|+|||.++|||+|||+++++|+.|
T Consensus 1 ~i~eVw~~Nl~~e~~~I~~~i~~~~fvAmDtEFpGvv~rp~g~f~~~~-~~~Y~~lr~nVd~l~iIQlGlt~~~~~g~~p 79 (252)
T 2d5r_A 1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNA-DYQYQLLRCNVDLLKIIQLGLTFMNEQGEYP 79 (252)
T ss_dssp CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHH-HHHHHHHHHHHTTCCCCEEEEEEECTTSCCC
T ss_pred CeEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceecccCCCCCCCH-HHHHHHHHHhhhhcceeEEEEEEEccCCCCC
Confidence 489999999999999999999999999999999999999998888776 9999999999999999999999999999998
Q ss_pred CCCCCCCceEEEEeccccCcCcCCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCCCceEEEeccchhHH
Q 023614 95 DLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFG 174 (280)
Q Consensus 95 ~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~~v~Wvtfhg~yD~g 174 (280)
. .+++|||||+ |++.+|+|+++||+||+++||||+|+.++|||+.+|+|+|++||||++++|+||+|||+||||
T Consensus 80 ~-----~~~~wqFNF~-F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~F~ell~~sglvl~~~v~Witfhg~yDf~ 153 (252)
T 2d5r_A 80 P-----GTSTWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFG 153 (252)
T ss_dssp S-----SCCEEEEEBC-CCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHH
T ss_pred C-----CceeEEEEEE-ECCcccccCHHHHHHHHHcCCChhHHHhcCCCHHHHHHHHHhcCcccCCCceEEEecCcchHH
Confidence 5 3789999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHH
Q 023614 175 YLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKI 254 (280)
Q Consensus 175 yL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l 254 (280)
||+|+|||++||+++++|+++++.+||+ |||||||++.|.++++||++||+.|+|+| +|++|||||||+||++||+||
T Consensus 154 yL~k~L~~~~LP~~~~~F~~~l~~~FP~-iyD~K~l~~~~~~l~~gL~~la~~L~v~r-~g~~HqAGsDsllT~~~F~km 231 (252)
T 2d5r_A 154 YLIKILTNSNLPEEELDFFEILRLFFPV-IYDVKYLMKSCKNLKGGLQEVAEQLELER-IGPQHQAGSDSLLTGMAFFKM 231 (252)
T ss_dssp HHHHHHHTSCCCSSHHHHHHHHHHHCSC-EEEHHHHGGGCTTCCSSHHHHHHHHTCCC-CSSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHCcc-hhhHHHHHHHhcccCCCHHHHHHHcCCCc-cCcccchhhhHHHHHHHHHHH
Confidence 9999999999999999999999999998 99999999999999999999999999999 999999999999999999999
Q ss_pred HHhhCCCccccccccceEecC
Q 023614 255 KDKHFGNEYELQKYANVLHGL 275 (280)
Q Consensus 255 ~~~~~~~~~~~~~~~g~i~Gl 275 (280)
++.+|++.++.++++|+||||
T Consensus 232 ~~~~f~~~~~~~~~~g~l~gl 252 (252)
T 2d5r_A 232 REMFFEDHIDDAKYCGHLYGL 252 (252)
T ss_dssp HHHTSCSSCCHHHHTTBCTTC
T ss_pred HHHhcCCCCCHHHcCCEecCC
Confidence 999998876778999999997
No 4
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9
Probab=100.00 E-value=1.4e-92 Score=652.35 Aligned_cols=262 Identities=36% Similarity=0.679 Sum_probs=238.7
Q ss_pred CCCCCceEEecCccCHHHHHHHHHHHhhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeecc
Q 023614 9 PPKPRILIREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSD 88 (280)
Q Consensus 9 ~~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~ 88 (280)
|++..+.|||||++||++||+.|+++|++|+||||||||||++++|.+.++++. ++||+++|+|||.++|||+|||+++
T Consensus 9 p~~~~~~i~eVw~~Nl~~e~~~I~~~i~~~~fVAmDtEFpGvv~rp~g~f~~~~-d~~Yq~lr~nVd~l~iIQlGLt~~~ 87 (289)
T 1uoc_A 9 PPPNYLFVRDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGTFRSKV-DYHYQTMRANVDFLNPIQLGLSLSD 87 (289)
T ss_dssp CCGGGGCCEEECTTTHHHHHHHHHHHTTTSCEEEEEEEEEC----------CHH-HHHHHHHHHHHTTCEEEEEEEEEEC
T ss_pred CCCCCcEEEEehhhhHHHHHHHHHHHHhhCCEEEEEeeecceeccCCcccCCCH-HHHHHHHHHhhhhccceEEEEEEEc
Confidence 334568999999999999999999999999999999999999999998888776 9999999999999999999999999
Q ss_pred CCCCCCCCCCCCCceEEEEeccccCcCcCCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCCCceEEEec
Q 023614 89 EEGNLPDLGSGSTYYIWEFNFKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFH 168 (280)
Q Consensus 89 ~~g~~p~~~~~~~~~~wqFNF~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~~v~Wvtfh 168 (280)
++|+.|.. .+++|||||+ |++.+|+|+++||+||+++||||+|++++||++.+|+|+|++||||++++|+||+||
T Consensus 88 ~~g~~p~~----~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~sgLvl~~~v~Witfh 162 (289)
T 1uoc_A 88 ANGNKPDN----GPSTWQFNFE-FDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYH 162 (289)
T ss_dssp TTCCCCSS----SCSEEEEEBC-CCTTCCCCCHHHHHHHHHTTCCHHHHHHHCBCHHHHHHHHHTSSCSSCTTSEEEESS
T ss_pred cCCCcCCC----CcceEEEEEE-ECCccccccHHHHHHHHHcCCChhHHHHcCCCHHHHHHHHHhcCCccCCCceEEEcc
Confidence 99999853 3799999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccc---------------hHHHHHHHcCCCcc
Q 023614 169 SAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYG---------------GLDRVCKALGVERV 233 (280)
Q Consensus 169 g~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~---------------~L~~la~~L~v~r~ 233 (280)
|+||||||+|+||+++||+++++|+++|+.+||. |||||||++.|.++++ ||++||+.|||+|
T Consensus 163 g~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP~-iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~lA~~L~v~r- 240 (289)
T 1uoc_A 163 AAYDLGFLINILMNDSMPNNKEDFEWWVHQYMPN-FYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTTLADELGLPR- 240 (289)
T ss_dssp TTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCSS-EEEHHHHHHHHTTTCC-------------CCSHHHHHHHTTCCC-
T ss_pred CcchHHHHHHHhccccCCcCHHHHHHHHHHhCcc-ceeHHHHHHHHHhccCcccccccccccccCCCHHHHHHHcCCCc-
Confidence 9999999999999999999999999999999998 9999999999987766 6999999999999
Q ss_pred CCCccchhhhHHHHHHHHHHHHHhhCC---CccccccccceEecCCCC
Q 023614 234 VGKSHQAGSDSLLTLHAFLKIKDKHFG---NEYELQKYANVLHGLELL 278 (280)
Q Consensus 234 ~g~~hqAGsDs~lT~~~F~~l~~~~~~---~~~~~~~~~g~i~Gl~~~ 278 (280)
+|.+|||||||+||++||+||++.+|. +..+.++++|+||||+.+
T Consensus 241 ~g~~HqAGsDSllT~~~F~kl~~~~~~~~~~~~~~~~~~g~l~Gl~~~ 288 (289)
T 1uoc_A 241 FSIFTTTGGQSLLMLLSFCQLSKLSMHKFPNGTDFAKYQGVIYGIDGD 288 (289)
T ss_dssp CGGGGSHHHHHHHHHHHHHHHHHHTTTBCTTSCBGGGGTTCSSCCTTC
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHhhhhcCCCChHHhCCEEeCcCCC
Confidence 999999999999999999999999874 333578999999999875
No 5
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=100.00 E-value=3.4e-60 Score=467.93 Aligned_cols=249 Identities=21% Similarity=0.223 Sum_probs=205.1
Q ss_pred EEecCccCHHHHHHHHHHHhhhCCeeEeeeccccccccCCCC----CCCCChhhhHHHHHhccccccceeeeeeeccCCC
Q 023614 16 IREVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDSN----IRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEG 91 (280)
Q Consensus 16 i~eVw~~Nl~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~----~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g 91 (280)
|+|||++||++||+.|+++|++|+||||||||||++.+|.+. +..+. ++||+++|+||+.++|||+|||+|+++|
T Consensus 2 ~m~V~~~Nf~~~l~~i~~~i~~~~fvaiD~Ef~Gi~~~~~~~~~~~~~~t~-~~~Y~~~r~~v~~~~iiQlGlt~f~~~~ 80 (507)
T 3d45_A 2 PMEIIRSNFKINLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTSGFDTP-EERYQKLKKHSMDFLLFQFGLCAFKYDH 80 (507)
T ss_dssp CEEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCC--------CBSCCH-HHHHHHHHHHHTTBCEEEEEEEEEEECS
T ss_pred CeEEeHHhHHHHHHHHHHHHhcCCEEEEeeeccCcCCCCCccccccccCCH-HHHHHHHHHHHHhcccceEEEEEEecCC
Confidence 689999999999999999999999999999999999887643 23455 9999999999999999999999999999
Q ss_pred CCCCCCCCCCceEEEEeccccCc-----Cc---CCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHH-----------
Q 023614 92 NLPDLGSGSTYYIWEFNFKDFDI-----AR---HAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLM----------- 152 (280)
Q Consensus 92 ~~p~~~~~~~~~~wqFNF~~F~~-----~~---d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~----------- 152 (280)
+.+ .+++|||||+.|+. .. ++|+++||+||++|||||||+.++||+|..++|+..
T Consensus 81 ~~~------~~~~~~fNf~~fp~~~~~~~~d~~~~~~~~Si~fL~~~GfDFnk~~~~GI~yl~~~ee~~~~~~~~~~~~~ 154 (507)
T 3d45_A 81 TDS------KHVTKSFNFYVFPKPFSRSSPDVKFVCQSSSIDFLASQGFDFNKVFCSGIPYLNQEEERQLREQFDEKRSQ 154 (507)
T ss_dssp SSS------CEEEEEEEEEBCCCCCSSSSCCCEEEEEHHHHHHHHTTTCCHHHHHTTCBCBCCHHHHHHHHHHSCC----
T ss_pred CCC------ceeEEeEEEEecCccccccCcccceeecHHHHHHHHHcCCChhhHHhcCCCCCChHHHHHHHHHHHhhhhh
Confidence 875 48999999999886 33 389999999999999999999999999988876532
Q ss_pred Hcc-------------------------------------cc---cC---------------------------------
Q 023614 153 SSG-------------------------------------LV---LN--------------------------------- 159 (280)
Q Consensus 153 ~Sg-------------------------------------lv---~~--------------------------------- 159 (280)
.+| +. ++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~wl~~~~~~~l~i~~~n~~~r~Lv~q~l~~~fp~~v~~~~~~~~~~~~~i 234 (507)
T 3d45_A 155 ANGAGALAKCPVTIPEDQKKFIDQVIEKIEDFLQSEEKRSLELDPCTGFQRKLIYQTLSWKYPKGIHVETLETDKKERHI 234 (507)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccccccCCcccCCHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcHHHHHHHHHHHHHhCCCceEeeeccCCCcceeE
Confidence 111 11 00
Q ss_pred ----------------------------------------CCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhh
Q 023614 160 ----------------------------------------KDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVF 199 (280)
Q Consensus 160 ----------------------------------------~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~ 199 (280)
.+..||.+++.+|++||++.++ +|||+++++|++.++.+
T Consensus 235 ~v~~~~~e~~~~~~~~~~~~~~~~~~~~~Gfr~v~~~L~~~~kpiVgHN~l~Dl~~l~~~F~-~pLP~~~~eFk~~i~~l 313 (507)
T 3d45_A 235 VISKVDEEERKRREQEKYTKEQEELNDAVGFSRVIHAIANSGKLVVGHNMLLDVMHTIHQFY-CPLPADLNEFKEMAICV 313 (507)
T ss_dssp -----------------CCSTHHHHHHHSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CSCCSSHHHHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCeEEEechHHHHHHHHHHhc-CCCCCCHHHHHHHHHHh
Confidence 1468999999999999999999 79999999999999999
Q ss_pred cCCCccchHHHHHh--hccc--cchHHHHHHHcC-----CCc------------cCCCccchhhhHHHHHHHHHHHHHhh
Q 023614 200 FGEKVYDVKHLIRF--CTCL--YGGLDRVCKALG-----VER------------VVGKSHQAGSDSLLTLHAFLKIKDKH 258 (280)
Q Consensus 200 Fp~~iyD~K~la~~--~~~l--~~~L~~la~~L~-----v~r------------~~g~~hqAGsDs~lT~~~F~~l~~~~ 258 (280)
||. |||||||+.. +..+ .++|+.|++.|+ +++ ..|+.||||+|||||+.||++|++.+
T Consensus 314 FP~-i~DTK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l 392 (507)
T 3d45_A 314 FPR-LLDTKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYL 392 (507)
T ss_dssp CSC-EEEHHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCc-eeEhHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 999 9999999987 3344 678999999987 333 14678999999999999999999887
Q ss_pred CC---C-c-------cccccccceEe
Q 023614 259 FG---N-E-------YELQKYANVLH 273 (280)
Q Consensus 259 ~~---~-~-------~~~~~~~g~i~ 273 (280)
.. . . .-++.+.|+|+
T Consensus 393 ~~~~~~~~~~~~~~~~~l~~~~N~l~ 418 (507)
T 3d45_A 393 GSLLSPPKMCVSARSKLIEPFFNKLF 418 (507)
T ss_dssp CC---------CCSCSSSGGGTTEEC
T ss_pred hhccCCcccccccchhHHHhhheeee
Confidence 51 1 1 11356788776
No 6
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A
Probab=100.00 E-value=7.9e-51 Score=394.02 Aligned_cols=234 Identities=23% Similarity=0.274 Sum_probs=188.8
Q ss_pred EecCccCHHHHHHHHHHHhhhCCeeEeeeccccccccCCC----CCCCCChhhhHHHHHhccccccceeeeeeeccCCCC
Q 023614 17 REVFEFNLISEFERIRALIDRYPIISMDTEFPGVVVRPDS----NIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGN 92 (280)
Q Consensus 17 ~eVw~~Nl~~e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~----~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~ 92 (280)
+|||++|+.+.|+.|+++|++|+||||||||||++.+|.. ....+. ++||+++|+||+.++|||+|||+|+++|+
T Consensus 1 M~V~r~nf~~~l~~i~~~i~~~~fVAiD~Ef~Gi~~~~~~~~~~~~~~s~-e~~Y~~lr~nv~~~~iiQlGlt~f~~~~~ 79 (430)
T 2a1r_A 1 MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVSALTNGFDTP-EERYQKLKKHSMDFLLFQFGLCTFKYDYT 79 (430)
T ss_dssp CEECHHHHHHHHHHHHHHHHHCSEEEEEEEESCSCSSSCC-----CCCCH-HHHHHHHHHHTTTBCEEEEEEEEEEEETT
T ss_pred CceeHHHHHHHHHHHHHHHhcCCEEEEeeeeccccCCCccccccccCCCH-HHHHHHHHHHHhhcceeeEEEEEEeecCC
Confidence 4899999999999999999999999999999999998763 122354 99999999999999999999999999998
Q ss_pred CCCCCCCCCceEEEEecccc----Cc----CcCCCchhHHHHHHHcCCCchhhhhcCCChHHHHHH------HH------
Q 023614 93 LPDLGSGSTYYIWEFNFKDF----DI----ARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAEL------LM------ 152 (280)
Q Consensus 93 ~p~~~~~~~~~~wqFNF~~F----~~----~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~------l~------ 152 (280)
.+ .+++|||||++| ++ .+++|+++||+||++|||||||+.++||+|..++|. +.
T Consensus 80 ~~------~~~~~~fNF~~FP~~~~~~~~~~~~~~~~~Si~fL~~~GfDFnk~~~~GI~y~~~~ee~~~r~~~~~~~~~~ 153 (430)
T 2a1r_A 80 DS------KYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQGFDFNKVFRNGIPYLNQEEERQLREQYDEKRSQA 153 (430)
T ss_dssp TT------EEEEEEEEEEBCCCCSSSSSCCCEEEEEHHHHHHHHHTTCCHHHHHTTCBCBCCHHHHHHTC----------
T ss_pred CC------ceeEEEEEEEeccccccccccchhhhccHHHHHHHHHcCCChhhHhhcCcCccCHHHHHHHHHHHHhhhhhh
Confidence 75 489999999998 43 247999999999999999999999999999754422 00
Q ss_pred ------------H---------------------------------------ccc----c----c--------------C
Q 023614 153 ------------S---------------------------------------SGL----V----L--------------N 159 (280)
Q Consensus 153 ------------~---------------------------------------Sgl----v----~--------------~ 159 (280)
. +|. | . .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~l~~~~~~~l~l~~~~~~qr~Lv~q~l~~~fp~~~~~~~~~~~ 233 (430)
T 2a1r_A 154 NGAGALSYVSPNTSKCPVTIPEDQKKFIDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETE 233 (430)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccCccccccccCCcHHHHHHHHHHHHHHHHHHcCCCCCccccCCCcHHHHHHHHHHHHHhCCCceeeeeeeec
Confidence 0 000 0 0 0
Q ss_pred ----------------------------------CCceE------------EEeccchhHHHHHHHhhCCCCCCCHHHHH
Q 023614 160 ----------------------------------KDVTW------------VTFHSAYDFGYLVKCLTQRVLPEKLSEFV 193 (280)
Q Consensus 160 ----------------------------------~~v~W------------vtfhg~yD~gyL~k~l~~~~LP~~~~~F~ 193 (280)
-.+.| |.+++.+|+.|+++.+. +|||+++++|+
T Consensus 234 ~~~~~v~v~k~~~e~~~~~e~~~~~~~~~~l~~~~Gfr~V~~~L~~s~KpiVGHN~llDl~~l~~~F~-~pLP~~~~eFk 312 (430)
T 2a1r_A 234 KKERYIVISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQFY-CPLPADLSEFK 312 (430)
T ss_dssp -----------------------CTTHHHHHHTTSBTHHHHHHHHHHCCEEEESSCHHHHHHHHHHHT-CCCCSSHHHHH
T ss_pred CCceEEEEEeCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCCCceEechhHHHHHHHHHHhc-cCCCCCHHHHH
Confidence 00112 44456799999999998 69999999999
Q ss_pred HHHhhhcCCCccchHHHHHhhc--cc--cchHHHHHHHcCCC--------------c---cCCCccchhhhHHHHHHHHH
Q 023614 194 TRVGVFFGEKVYDVKHLIRFCT--CL--YGGLDRVCKALGVE--------------R---VVGKSHQAGSDSLLTLHAFL 252 (280)
Q Consensus 194 ~~l~~~Fp~~iyD~K~la~~~~--~l--~~~L~~la~~L~v~--------------r---~~g~~hqAGsDs~lT~~~F~ 252 (280)
+.++.+||. |||||||+.... .+ .++|+.|.+.|.-. + ..++.|+||+|||||+.||.
T Consensus 313 ~~i~~lFP~-i~DTK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi 391 (430)
T 2a1r_A 313 EMTTCVFPR-LLDTKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFI 391 (430)
T ss_dssp HHHHHHCSS-EEEHHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCc-eeehHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHH
Confidence 999999999 999999998764 22 35799999877421 1 14678999999999999999
Q ss_pred HHHHhhC
Q 023614 253 KIKDKHF 259 (280)
Q Consensus 253 ~l~~~~~ 259 (280)
+|...+.
T Consensus 392 ~l~~~l~ 398 (430)
T 2a1r_A 392 SMANYLG 398 (430)
T ss_dssp HHHHHHG
T ss_pred HHHHHHh
Confidence 9998763
No 7
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=98.86 E-value=3.1e-08 Score=87.34 Aligned_cols=189 Identities=14% Similarity=0.187 Sum_probs=123.8
Q ss_pred HHHHHHHHhhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeecc--CCCCCCCCCCCCCceE
Q 023614 27 EFERIRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSD--EEGNLPDLGSGSTYYI 104 (280)
Q Consensus 27 e~~~I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~--~~g~~p~~~~~~~~~~ 104 (280)
++..+.+-+++..||++|+|.+|+... . -.|||+|+..++ ++|+. ...
T Consensus 26 ~~~~l~~~l~~~~~vviD~ETTGl~~~-------~---------------~~IieIgav~~~~~~~g~i--------~~~ 75 (235)
T 3v9w_A 26 QLTGLCDRFRGFYPVVIDVETAGFNAK-------T---------------DALLEIAAITLKMDEQGWL--------MPD 75 (235)
T ss_dssp ---CHHHHTTTEEEEEEEEEESSSCTT-------T---------------BCEEEEEEEEEEECTTSCE--------EEE
T ss_pred cccCchhcccCCcEEEEEEeCCCCCCC-------C---------------CeEEEEEEEEEEEcCCCcc--------ccc
Confidence 344456668889999999999998321 1 138999999876 45643 134
Q ss_pred EEEeccccCcC-cCCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHc--ccccC---CCceEEEeccchhHHHHHH
Q 023614 105 WEFNFKDFDIA-RHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSS--GLVLN---KDVTWVTFHSAYDFGYLVK 178 (280)
Q Consensus 105 wqFNF~~F~~~-~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~S--glv~~---~~v~Wvtfhg~yD~gyL~k 178 (280)
..|+.+ .... .....+.+.+. +||.-+...+.|.+.....+.+..- ..+.. ++..+|+++..+|+.+|-+
T Consensus 76 ~~f~~~-v~P~~~~~i~~~~~~i---~GIt~e~~v~~~~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~~fD~~~L~~ 151 (235)
T 3v9w_A 76 TTLHFH-VEPFVGANLQPEALAF---NGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMA 151 (235)
T ss_dssp EEEEEE-BCCCTTCBCCHHHHHH---HCCCTTCGGGCCBCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTTHHHHHHHHH
T ss_pred ceEEEE-ECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHHHhhhccCCCcEEEEeChHHHHHHHHH
Confidence 566665 4432 23455666553 8888765667788766543333220 00000 3457888888999999977
Q ss_pred HhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhh
Q 023614 179 CLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 258 (280)
Q Consensus 179 ~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~ 258 (280)
.+....++.. -+.+..++||..+++.... ..+|..+++.+|++...+..|.|..|+..|+++|.+|.+.+
T Consensus 152 ~~~~~g~~~~---------p~~~~~~~Dt~~la~~~~p-~~~L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l 221 (235)
T 3v9w_A 152 AAERASLKRN---------PFHPFATFDTAALAGLALG-QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRW 221 (235)
T ss_dssp HHHHTTCCCC---------CEEEEEEEEHHHHHHHHHS-CCSHHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCC---------CCCCCcEEEhHHHHHHHhC-CCCHHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHHHHHHH
Confidence 7642222100 0111227899988887633 24899999999999722378999999999999999999886
Q ss_pred C
Q 023614 259 F 259 (280)
Q Consensus 259 ~ 259 (280)
.
T Consensus 222 ~ 222 (235)
T 3v9w_A 222 K 222 (235)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=98.76 E-value=5.6e-07 Score=77.12 Aligned_cols=174 Identities=13% Similarity=0.057 Sum_probs=116.5
Q ss_pred CeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccC-CCCCCCCCCCCCceEEEEeccccCcCcC
Q 023614 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIARH 117 (280)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~d 117 (280)
.||++|+|.+|+..... ...-.|||+|...++. +|+. .-+|+.+ ......
T Consensus 11 ~~vviD~ETTGl~~~~~------------------~~~~~Iieigav~~~~~~g~i----------~~~f~~l-v~P~~~ 61 (204)
T 1w0h_A 11 YICIIDFEATCEEGNPP------------------EFVHEIIEFPVVLLNTHTLEI----------EDTFQQY-VRPEIN 61 (204)
T ss_dssp EEEECCCEECCCTTCCT------------------TSCCCEEEEEEEEEETTTCSE----------EEEEEEE-BCCSSS
T ss_pred EEEEEEEecCCcCCCCC------------------CCCCcEEEEEEEEEECCCCEE----------eeeeeeE-ECCCCC
Confidence 68999999999743210 0112499999999985 6642 3356665 444332
Q ss_pred -CCchhHHHHHHHcCCCchhhhhcCCChHHHH----HHHHHcccccCCCceEEEeccchhHH-HHHHHhh--CCCCCCCH
Q 023614 118 -AHALDSVELLKRQGIDFEKNREFGIDSVRFA----ELLMSSGLVLNKDVTWVTFHSAYDFG-YLVKCLT--QRVLPEKL 189 (280)
Q Consensus 118 -~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~----e~l~~Sglv~~~~v~Wvtfhg~yD~g-yL~k~l~--~~~LP~~~ 189 (280)
...+.+.+. +||.=..+. .|.+..... +.+....+ ..+....|++++.+|++ +|-+.+. |.++|.
T Consensus 62 ~~i~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~~l~~~~~-~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~-- 134 (204)
T 1w0h_A 62 TQLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDWMKLKEL-GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP-- 134 (204)
T ss_dssp CSCCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTB-TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCG--
T ss_pred CccCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHHhcCC-CCCCcEEEEEECcchHHHHHHHHHHHhCCCCcc--
Confidence 455555544 788877665 466665433 33332221 12234578888899997 9877664 344443
Q ss_pred HHHHHHHhhhcCCCccchHHHHHhhccc---cchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhhC
Q 023614 190 SEFVTRVGVFFGEKVYDVKHLIRFCTCL---YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 190 ~~F~~~l~~~Fp~~iyD~K~la~~~~~l---~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
++.. ++||+.+++..-.. ..+|..+++.+|++. .|..|.|-.|+..|+.+|.+|.+...
T Consensus 135 ---------~~~~-~~dt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~~~~H~Al~Da~~ta~l~~~l~~~~~ 196 (204)
T 1w0h_A 135 ---------FAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPHCGLDDSKNIARIAVRMLQDGC 196 (204)
T ss_dssp ---------GGSE-EEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---------cccc-eEEHHHHHHHHhCCCCccchHHHHHHHcCCCC-CCCccCcHHHHHHHHHHHHHHHHCCC
Confidence 2224 88999888765322 257999999999998 77889999999999999999988754
No 9
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=98.72 E-value=1.2e-07 Score=83.05 Aligned_cols=182 Identities=18% Similarity=0.235 Sum_probs=120.3
Q ss_pred HHHHhhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccC--CCCCCCCCCCCCceEEEEe
Q 023614 31 IRALIDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE--EGNLPDLGSGSTYYIWEFN 108 (280)
Q Consensus 31 I~~~i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~--~g~~p~~~~~~~~~~wqFN 108 (280)
+.+-+++..||++|+|.+|+... .-.|||+|+..++. +|+. ...-.|+
T Consensus 22 ~~~~~~~~~~vviD~ETTGl~~~----------------------~~~IieIg~v~~~~~~~g~i--------~~~~~f~ 71 (224)
T 2f96_A 22 MARRFRGYLPVVVDVETGGFNSA----------------------TDALLEIAATTVGMDEKGFL--------FPEHTYF 71 (224)
T ss_dssp HHHHTTTEEEEEEEEEESSSCTT----------------------TBCEEEEEEEEEEECTTSCE--------EEEEEEE
T ss_pred hhccccCCcEEEEEeeCCCCCCC----------------------CCeeEEEEEEEEEEcCCCcc--------cccceEE
Confidence 45567788999999999997321 01499999999873 5543 1345566
Q ss_pred ccccCcC-cCCCchhHHHHHHHcCCCchhhhhcCCChHHH----HHHHHHccccc---CCCceEEEeccchhHHHHHHHh
Q 023614 109 FKDFDIA-RHAHALDSVELLKRQGIDFEKNREFGIDSVRF----AELLMSSGLVL---NKDVTWVTFHSAYDFGYLVKCL 180 (280)
Q Consensus 109 F~~F~~~-~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f----~e~l~~Sglv~---~~~v~Wvtfhg~yD~gyL~k~l 180 (280)
.+ .... .....+.+.+. +||.=....+.|.+.... .+.+.. .+. .++...|++++.+|+.+|.+.+
T Consensus 72 ~l-V~P~~~~~i~~~~~~i---hGIt~e~~v~~~~~~~~v~~~~~~~l~~--~~~~~~~~~~~lV~hn~~FD~~fL~~~~ 145 (224)
T 2f96_A 72 FR-IEPFEGANIEPAALEF---TGIKLDHPLRMAVQEEAALTEIFRGIRK--ALKANGCKRAILVGHNSSFDLGFLNAAV 145 (224)
T ss_dssp EE-BCCCTTCBCCHHHHHH---HTCCTTCTTCCCBCHHHHHHHHHHHHHH--HHHHTTCSEEEEEETTHHHHHHHHHHHH
T ss_pred EE-ECCCCCCCCCHHHHHH---hCCCHHHHHhcCCCHHHHHHHHHHHHHH--HhhhcccCCCEEEEeChhhhHHHHHHHH
Confidence 65 3332 23455666554 799876667778886543 222211 010 1234677888899999998776
Q ss_pred hCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCC-CccchhhhHHHHHHHHHHHHHhhC
Q 023614 181 TQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVG-KSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 181 ~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g-~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
....++. .-+.+..++||..+++..-+ ..+|..+++.+|++. .+ ..|.|-.|++.|+++|.+|.+.+.
T Consensus 146 ~~~g~~~---------~p~~~~~~iDt~~l~~~~~~-~~~L~~l~~~~gi~~-~~~~~H~Al~Da~~ta~l~~~l~~~~~ 214 (224)
T 2f96_A 146 ARTGIKR---------NPFHPFSSFDTATLAGLAYG-QTVLAKACQAAGMEF-DNREAHSARYDTEKTAELFCGIVNRWK 214 (224)
T ss_dssp HHHTCCC---------CCEEEEEEEEHHHHHHHHHS-CCSHHHHHHHTTCCC-CTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCc---------CCccccceeeHHHHHHHHcC-CCCHHHHHHHcCCCc-CCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4211220 00112237899888876532 237999999999987 44 689999999999999999988764
No 10
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=98.62 E-value=1.1e-06 Score=74.71 Aligned_cols=164 Identities=20% Similarity=0.216 Sum_probs=108.0
Q ss_pred hhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCCCCCCCCCceEEEEeccccCc
Q 023614 35 IDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDI 114 (280)
Q Consensus 35 i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~ 114 (280)
+...+||++|+|.+|+... . -.|||+|+..++ +|+ ..-.|+.+ ...
T Consensus 9 l~~~~~v~iD~ETTGl~~~-------~---------------~~IieIg~v~~~-~g~----------i~~~f~~l-v~P 54 (186)
T 2p1j_A 9 FGDATFVVLDFETTGLDPQ-------V---------------DEIIEIGAVKIQ-GGQ----------IVDEYHTL-IKP 54 (186)
T ss_dssp ----CEEEEEEEESCSCTT-------T---------------CCEEEEEEEEEE-TTE----------EEEEEEEE-CBC
T ss_pred CcCCCEEEEEEECCCCCCC-------C---------------CeEEEEEEEEEE-CCE----------EEEEEEEE-ECc
Confidence 4567999999999997321 0 138999998876 443 22345555 333
Q ss_pred CcCCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCCCceEEEeccchhHHHHHHHhh--CCCCCCCHHHH
Q 023614 115 ARHAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLT--QRVLPEKLSEF 192 (280)
Q Consensus 115 ~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~~v~Wvtfhg~yD~gyL~k~l~--~~~LP~~~~~F 192 (280)
.. ..++.+.+ -+||.=..+. .+.+.....+.+.. .+ . +-..|++++.+|+.+|.+.+. |.+.|
T Consensus 55 ~~-~i~~~~~~---i~GIt~~~l~-~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~~------ 119 (186)
T 2p1j_A 55 SR-EISRKSSE---ITGITQEMLE-NKRSIEEVLPEFLG--FL-E-DSIIVAHNANFDYRFLRLWIKKVMGLDW------ 119 (186)
T ss_dssp SS-CCCHHHHH---HHCCCHHHHT-TCCBHHHHHHHHHH--HS-S-SCEEEETTHHHHHHHHHHHHHHHHCCCC------
T ss_pred CC-CCCHHHhh---hcCCCHHHHh-cCCCHHHHHHHHHH--HH-C-CCEEEEECcHHHHHHHHHHHHHcCCCCC------
Confidence 32 34444444 3888766554 46666654444432 22 2 336788888999999977664 23332
Q ss_pred HHHHhhhcCCCccchHHHHHhhccc-cchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHh
Q 023614 193 VTRVGVFFGEKVYDVKHLIRFCTCL-YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDK 257 (280)
Q Consensus 193 ~~~l~~~Fp~~iyD~K~la~~~~~l-~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~ 257 (280)
+..++||..+++...+. ..+|..+++.+|++. .+ .|.|-.|+..|+.+|.+|.+.
T Consensus 120 --------~~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~-~~-~H~Al~Da~~t~~l~~~l~~~ 175 (186)
T 2p1j_A 120 --------ERPYIDTLALAKSLLKLRSYSLDSVVEKLGLGP-FR-HHRALDDARVTAQVFLRFVEM 175 (186)
T ss_dssp --------CCCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCS-TT-CCHHHHHHHHHHHHHHHHTTC
T ss_pred --------CCCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCC-CC-CcCHHHHHHHHHHHHHHHHHH
Confidence 22378998888766433 457999999999997 44 699999999999999999765
No 11
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=98.61 E-value=1.3e-06 Score=80.60 Aligned_cols=173 Identities=15% Similarity=0.201 Sum_probs=116.8
Q ss_pred CeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccC-CCCCCCCCCCCCceEEEEeccccCcCcC
Q 023614 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIARH 117 (280)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~d 117 (280)
.||+||+|.+|+.... + | .-.|||+|...++. +|+. ...-.|+-+ ......
T Consensus 20 ~~vviD~ETTGl~~~~---------d--~--------~~eIIEIgaV~vd~~~g~i--------~~~~~f~~l-V~P~~~ 71 (308)
T 3cg7_A 20 TLLILDFETTSDAANQ---------D--Y--------PCEVIQFAIVAYDVPNDKI--------REDISFNKY-VKPVLN 71 (308)
T ss_dssp EEEEEEEEECCBTTBC---------S--C--------CCCEEEEEEEEEETTTTEE--------EEEEEEEEE-CBCSSB
T ss_pred eEEEEEeecCCCCCCC---------C--C--------CCCeEEEEEEEEEcCCCEE--------eeccceeeE-ECCCCC
Confidence 5899999999984321 1 0 12499999999985 5542 121256665 444332
Q ss_pred -CCchhHHHHHHHcCCCchhhhhcCCChHH----HHHHHHHcccccCCCceEEEeccchhH-HHHHHHhh--CCCCCCCH
Q 023614 118 -AHALDSVELLKRQGIDFEKNREFGIDSVR----FAELLMSSGLVLNKDVTWVTFHSAYDF-GYLVKCLT--QRVLPEKL 189 (280)
Q Consensus 118 -~~~~~Si~fL~~~G~DF~k~~~~GI~~~~----f~e~l~~Sglv~~~~v~Wvtfhg~yD~-gyL~k~l~--~~~LP~~~ 189 (280)
...+.+.+. +||.=+.+.. |.+... |.+.+-...+| ..++.|++ +|.+|+ .+|-+-+. |-++|.
T Consensus 72 p~i~~~~~~l---tGIt~e~v~~-ap~~~evl~~f~~~l~~~~lv-ahn~~lv~-~g~fD~~~fL~~~~~~~g~~~p~-- 143 (308)
T 3cg7_A 72 RTLTKNCVDF---TGIPQRSIDT-ADTFDVVYEQFQQWLITLGLE-EGKFAFVC-DSRQDLWRIAQYQMKLSNIQMPA-- 143 (308)
T ss_dssp CSCCHHHHHH---HCCCHHHHHT-SCBHHHHHHHHHHHHHHHCCC-TTSEEEEE-SSSHHHHTHHHHHHHHTTCCCCG--
T ss_pred CCCCHHHHHH---cCCCHHHHhc-CCCHHHHHHHHHHHHHhCCcC-CcceEEec-cCcccHHHHHHHHHHHcCCCCch--
Confidence 256666554 8888776654 777664 33444444454 55677776 478999 68866553 445553
Q ss_pred HHHHHHHhhhcCCCccchHHHHHhhc-cc-------cchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhh
Q 023614 190 SEFVTRVGVFFGEKVYDVKHLIRFCT-CL-------YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 258 (280)
Q Consensus 190 ~~F~~~l~~~Fp~~iyD~K~la~~~~-~l-------~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~ 258 (280)
+|.. ..||+.+++..- .. ..+|..+++.+|++. .|..|.|-.|+..|+.+|.+|.+..
T Consensus 144 ---------~~~~-~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~gi~~-~~~~HrAl~DA~ata~l~~~l~~~~ 209 (308)
T 3cg7_A 144 ---------FFRQ-YINLYKIFTNEMDRMGPKELSATTNIGKMNEYYDLPT-IGRAHDAMDDCLNIATILQRMINMG 209 (308)
T ss_dssp ---------GGSE-EEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ---------hhcc-eeeHHHHHHHHhccccccccccCcCHHHHHHHcCCCC-CCCCcCHHHHHHHHHHHHHHHHHcC
Confidence 2224 779988876542 21 247999999999998 7888999999999999999998764
No 12
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.58 E-value=7.1e-06 Score=75.18 Aligned_cols=175 Identities=13% Similarity=0.044 Sum_probs=117.6
Q ss_pred CCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccC-CCCCCCCCCCCCceEEEEeccccCcCc
Q 023614 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIAR 116 (280)
Q Consensus 38 ~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~ 116 (280)
-.||++|+|.+|+...+. ...-.|||+|...++. +|+ ..-.|+.+ .....
T Consensus 78 ~~~vviD~ETTGl~~~~~------------------~~~~~IIeIgaV~v~~~~g~----------i~~~f~~l-V~P~~ 128 (299)
T 1zbh_A 78 DYICIIDFEATCEEGNPP------------------EFVHEIIEFPVVLLNTHTLE----------IEDTFQQY-VRPEI 128 (299)
T ss_dssp SEEEEECCEECCCTTCCT------------------TCCCCEEEEEEEEEETTTCC----------EEEEEEEE-BCCSS
T ss_pred ceEEEEEeecccCCCCCC------------------CCCCceEEEEEEEEECCCCe----------Eeeeeeee-ecCCC
Confidence 368999999999843210 0112499999999986 343 33456665 44433
Q ss_pred C-CCchhHHHHHHHcCCCchhhhhcCCChHHHH----HHHHHcccccCCCceEEEeccchhHH-HHHHHhh--CCCCCCC
Q 023614 117 H-AHALDSVELLKRQGIDFEKNREFGIDSVRFA----ELLMSSGLVLNKDVTWVTFHSAYDFG-YLVKCLT--QRVLPEK 188 (280)
Q Consensus 117 d-~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~----e~l~~Sglv~~~~v~Wvtfhg~yD~g-yL~k~l~--~~~LP~~ 188 (280)
. ...+.+.+. +||.=..+. .|.+..... +.+...++- .+....|++++.+|++ ||-+.+. |.++|.
T Consensus 129 ~~~i~~~~~~i---hGIt~e~v~-~ap~~~evl~~f~~~l~~~~~~-~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~- 202 (299)
T 1zbh_A 129 NTQLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP- 202 (299)
T ss_dssp SCSCCHHHHHH---HCCCHHHHH-TSBCHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-
T ss_pred CCCCCHHHHHH---hCCCHHHHh-cCCCHHHHHHHHHHHHhhcccC-CCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCc-
Confidence 2 456666555 788877664 466665433 333332211 1224778889999999 9977654 445552
Q ss_pred HHHHHHHHhhhcCCCccchHHHHHhhcccc---chHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhhC
Q 023614 189 LSEFVTRVGVFFGEKVYDVKHLIRFCTCLY---GGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 189 ~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~---~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
++.. +.|++.+.....++. .+|..+++.+|++. .|..|.|-.|+..|+.+|.+|.+...
T Consensus 203 ----------~~~~-~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~g~~H~Al~DA~ata~l~~~l~~~~~ 264 (299)
T 1zbh_A 203 ----------FAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPNCGLDDSKNIARIAVRMLQDGC 264 (299)
T ss_dssp ----------GGSE-EEEHHHHHHHHHTCCGGGCSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------ccch-HHHHHHHHHHHhCCCCCCccHHHHHHHcCCCC-CCCCCChHHHHHHHHHHHHHHHHhCC
Confidence 1224 789987766543332 47999999999998 78889999999999999999988754
No 13
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=98.55 E-value=8.8e-07 Score=75.49 Aligned_cols=172 Identities=20% Similarity=0.218 Sum_probs=109.1
Q ss_pred CCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCCCCCCCCCceEEEEeccccCcCcC
Q 023614 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIARH 117 (280)
Q Consensus 38 ~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~d 117 (280)
.+||++|+|.+|+.... . | -+.-.|||+|...++ +|+.- .-.|+.+ .....
T Consensus 9 ~~~vviD~ETTGl~~~~---------~--~------~~~~~Iieig~v~~~-~~~~~---------~~~f~~l-v~P~~- 59 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIG---------A--H------YEGHKIIEIGAVEVV-NRRLT---------GNNFHVY-LKPDR- 59 (194)
T ss_dssp CEEEEEEEEESCCCSSS---------S--T------TTTCCEEEEEEEEEE-TTEEC---------SCCEEEE-CCCSS-
T ss_pred CCEEEEEeeCCCCCCcc---------c--C------CCCCEEEEEEEEEEE-CCeEe---------ccEEEEE-ECcCC-
Confidence 47999999999984321 0 0 011249999999887 34321 1124444 33332
Q ss_pred CCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCCCceEEEeccchhHHHHHHHhh--CCCCCCCHHHHHHH
Q 023614 118 AHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLT--QRVLPEKLSEFVTR 195 (280)
Q Consensus 118 ~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~~v~Wvtfhg~yD~gyL~k~l~--~~~LP~~~~~F~~~ 195 (280)
...+.+.+. +||.=+.+. .+.+.....+.+.. .+ . +-..|++++.+|+.+|.+.+. |.+.|. ..
T Consensus 60 ~i~~~~~~i---~GIt~~~l~-~~~~~~~v~~~~~~--~l-~-~~~lv~hn~~fD~~~L~~~~~~~g~~~p~-~~----- 125 (194)
T 2gui_A 60 LVDPEAFGV---HGIADEFLL-DKPTFAEVADEFMD--YI-R-GAELVIHNAAFDIGFMDYEFSLLKRDIPK-TN----- 125 (194)
T ss_dssp CCCHHHHHH---HCCCHHHHT-TSCCHHHHHHHHHH--HH-T-TSEEEETTHHHHHHHHHHHHHHTCSCCCC-GG-----
T ss_pred cCCHHHHHh---hCcCHHHHh-CCCCHHHHHHHHHH--HH-C-CCeEEEEchHHhHHHHHHHHHHcCCCCcc-cc-----
Confidence 445555544 788866654 45555443333321 11 2 225788888999999987765 444442 00
Q ss_pred HhhhcCCCccchHHHHHhh-ccccchHHHHHHHcCCCccCC-CccchhhhHHHHHHHHHHHHHh
Q 023614 196 VGVFFGEKVYDVKHLIRFC-TCLYGGLDRVCKALGVERVVG-KSHQAGSDSLLTLHAFLKIKDK 257 (280)
Q Consensus 196 l~~~Fp~~iyD~K~la~~~-~~l~~~L~~la~~L~v~r~~g-~~hqAGsDs~lT~~~F~~l~~~ 257 (280)
.+.. ++||-.+++.. ++...+|..+++.+|++. .+ ..|.|-.|+..|+++|.+|.+.
T Consensus 126 ---~~~~-~iDt~~l~~~~~p~~~~~L~~l~~~~gi~~-~~~~~H~Al~Da~~ta~l~~~l~~~ 184 (194)
T 2gui_A 126 ---TFCK-VTDSLAVARKMFPGKRNSLDALCARYEIDN-SKRTLHGALLDAQILAEVYLAMTGG 184 (194)
T ss_dssp ---GTSE-EEEHHHHHHHHSTTSCCSHHHHHHHTTCCC-TTCSSCCHHHHHHHHHHHHHHHTC-
T ss_pred ---ccCc-eeeHHHHHHHHcCCCCCCHHHHHHHcCcCC-CCCCCCChHHHHHHHHHHHHHHHhc
Confidence 0123 78887777654 334568999999999998 66 5899999999999999998764
No 14
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=98.53 E-value=5.7e-06 Score=72.47 Aligned_cols=171 Identities=15% Similarity=0.135 Sum_probs=113.5
Q ss_pred CeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCC-CCCCCCCCCCCceEEEEeccccCcCc-
Q 023614 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEE-GNLPDLGSGSTYYIWEFNFKDFDIAR- 116 (280)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~-g~~p~~~~~~~~~~wqFNF~~F~~~~- 116 (280)
.||++|+|.+|+.... +.-.|||+|...++.+ |+ ..-+|+.+ .....
T Consensus 32 ~~vviD~ETTGl~~~~--------------------d~~~IieIgav~v~~~~~~----------i~~~f~~l-V~P~~~ 80 (224)
T 2xri_A 32 YFLVLDFEATCDKPQI--------------------HPQEIIEFPILKLNGRTME----------IESTFHMY-VQPVVH 80 (224)
T ss_dssp EEEEECCEECCCC-CC--------------------SSCCEEEEEEEEEETTTCC----------EEEEEEEE-CCCSSS
T ss_pred eEEEEEEEcCCCCCCC--------------------CCcceEEEEEEEEecCCcE----------EeeeeeeE-ECCCCC
Confidence 5999999999974210 1124999999988854 32 33456666 44433
Q ss_pred CCCchhHHHHHHHcCCCchhhhhcCCChHH----HHHHHHHccccc-CCCceEEEeccchhHHHHH-HHhh--CCCCCCC
Q 023614 117 HAHALDSVELLKRQGIDFEKNREFGIDSVR----FAELLMSSGLVL-NKDVTWVTFHSAYDFGYLV-KCLT--QRVLPEK 188 (280)
Q Consensus 117 d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~----f~e~l~~Sglv~-~~~v~Wvtfhg~yD~gyL~-k~l~--~~~LP~~ 188 (280)
....+.+.+. +||.=..+ +.|.+... |.+.+....+|. |-...|++. |.+|+++++ +.+. |-++|.
T Consensus 81 ~~i~~~~~~l---tGIt~~~v-~~a~~~~~v~~~f~~~l~~~~lv~hn~~~~~~t~-g~fD~~fll~~~~~~~g~~~p~- 154 (224)
T 2xri_A 81 PQLTPFCTEL---TGIIQAMV-DGQPSLQQVLERVDEWMAKEGLLDPNVKSIFVTC-GDWDLKVMLPGQCQYLGLPVAD- 154 (224)
T ss_dssp CSCCHHHHHH---HCCCHHHH-TTCCCHHHHHHHHHHHHHHTTTTSTTSCEEEEES-SSHHHHTHHHHHHHHHTCCCCG-
T ss_pred CcCCHHHHHH---hCcCHHHH-cCCCCHHHHHHHHHHHHhhcccccCCCceEEEEe-ChhhHHHHHHHHHHHhCCCCcc-
Confidence 2455656555 88886655 45776654 444454554553 334578887 699999855 3332 445553
Q ss_pred HHHHHHHHhhhcCCCccchHHHHHhhccc--cchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhh
Q 023614 189 LSEFVTRVGVFFGEKVYDVKHLIRFCTCL--YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKH 258 (280)
Q Consensus 189 ~~~F~~~l~~~Fp~~iyD~K~la~~~~~l--~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~ 258 (280)
+|.. ..|++...+...++ ..+|..+++.+|++. .|.+|.|-.|+..|+.+|.+|.+..
T Consensus 155 ----------~~~~-~iD~~~~~~~~~~~~p~~~L~~l~~~~gi~~-~~~~H~Al~DA~~ta~l~~~l~~~g 214 (224)
T 2xri_A 155 ----------YFKQ-WINLKKAYSFAMGCWPKNGLLDMNKGLSLQH-IGRPHSGIDDCKNIANIMKTLAYRG 214 (224)
T ss_dssp ----------GGSC-EEEHHHHHHHHHTSCCTTTHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred ----------cccc-eEeHHHHHHHHhccCCCCCHHHHHHHcCCCC-CCCCcChHHHHHHHHHHHHHHHHcC
Confidence 1224 77876544433333 247999999999998 7889999999999999999998763
No 15
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.49 E-value=1.5e-06 Score=77.47 Aligned_cols=180 Identities=16% Similarity=0.122 Sum_probs=114.3
Q ss_pred CeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCC---------CCCCCCCCCCceEEEEec
Q 023614 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEG---------NLPDLGSGSTYYIWEFNF 109 (280)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g---------~~p~~~~~~~~~~wqFNF 109 (280)
+||++|+|-+|+.... =.|||+|+..++.++ .....+.. ...+-.|+.
T Consensus 13 ~~vv~D~ETTGl~~~~----------------------d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~ 69 (242)
T 3mxm_B 13 TLIFLDLEATGLPSSR----------------------PEVTELCLLAVHRRALENTSISQGHPPPVPRP-PRVVDKLSL 69 (242)
T ss_dssp EEEEEEEEESSCGGGC----------------------CCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCC-CSCCEEEEE
T ss_pred eEEEEEeecCCCCCCC----------------------CeeEEEEEEEecCCcccccccccccccccccc-cchhheeEE
Confidence 5999999999984321 249999998876542 10000000 123345665
Q ss_pred cccCcCcCCCchhHHHHHHHcCCCchhhhhcCCC-hH-HHHHHHHH--cccccCCCceEEEecc-chhHHHHHHHhhCCC
Q 023614 110 KDFDIARHAHALDSVELLKRQGIDFEKNREFGID-SV-RFAELLMS--SGLVLNKDVTWVTFHS-AYDFGYLVKCLTQRV 184 (280)
Q Consensus 110 ~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~-~~-~f~e~l~~--Sglv~~~~v~Wvtfhg-~yD~gyL~k~l~~~~ 184 (280)
. .+.. ....+.+.+ -|||.=..+...|+| .. ...+.|.. .+. .+...+|++++ .+|++||-+.+...-
T Consensus 70 l-i~P~-~~i~~~~~~---i~GIt~~~l~~~g~p~~~~ev~~~~~~fl~~~--~~~~~lVaHNav~FD~~fL~~~~~r~g 142 (242)
T 3mxm_B 70 C-IAPG-KACSPGASE---ITGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLS 142 (242)
T ss_dssp E-CCCS-SCCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSS
T ss_pred E-ECCC-CCCCHHHHH---hcCCCHHHHHhcCCCchhHHHHHHHHHHHhcC--CCCCEEEEcCChHhhHHHHHHHHHHcC
Confidence 5 4443 245666654 499999999998864 42 33333322 111 12357888888 999999998886422
Q ss_pred CCCCHHHHHHHHhhhcCCCccchHHHHHhhc---------cc-cchHHHHHHH-cCCCccCCCccchhhhHHHHHHHHHH
Q 023614 185 LPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT---------CL-YGGLDRVCKA-LGVERVVGKSHQAGSDSLLTLHAFLK 253 (280)
Q Consensus 185 LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~---------~l-~~~L~~la~~-L~v~r~~g~~hqAGsDs~lT~~~F~~ 253 (280)
+|.. .-+..++||-.+++.+. .+ +-+|+.+++. +|++. . .+|.|-+|++.|+++|.+
T Consensus 143 ~~~~----------~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~-~-~~H~Al~Da~ata~l~~~ 210 (242)
T 3mxm_B 143 TPSP----------LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAP-T-DSHTAEGDDLTLLSICQW 210 (242)
T ss_dssp SCCT----------TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCC-S-STTSHHHHHHHHHHHHTS
T ss_pred CCCC----------ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCC-C-CCcChHHHHHHHHHHHHH
Confidence 2211 01112668777766432 12 3479999977 99987 4 479999999999999999
Q ss_pred HHHhhCC
Q 023614 254 IKDKHFG 260 (280)
Q Consensus 254 l~~~~~~ 260 (280)
+.+.+..
T Consensus 211 ~~~~~~~ 217 (242)
T 3mxm_B 211 KPQALLQ 217 (242)
T ss_dssp SHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
No 16
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.38 E-value=5.2e-06 Score=72.88 Aligned_cols=175 Identities=16% Similarity=0.122 Sum_probs=109.5
Q ss_pred CCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCC------CC---CCCCCCCCceEEEEe
Q 023614 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEG------NL---PDLGSGSTYYIWEFN 108 (280)
Q Consensus 38 ~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g------~~---p~~~~~~~~~~wqFN 108 (280)
.+||++|+|.+|+... .-.|||+|+..++.++ .. +.. ....-.|+
T Consensus 10 ~~~v~iD~ETTGl~~~----------------------~~~IieIg~v~~~~~~~~~~~~~~~~~~~~----~~i~~~f~ 63 (238)
T 1y97_A 10 ETFVFLDLEATGLPSV----------------------EPEIAELSLFAVHRSSLENPEHDESGALVL----PRVLDKLT 63 (238)
T ss_dssp SEEEEEEEEESSCGGG----------------------CCCEEEEEEEEEEHHHHTSCBC---CCCBC----CSSCEEEE
T ss_pred CeEEEEEeeCCCcCCC----------------------CCcEEEEEEEEecccccccccccccccccc----cccceeeE
Confidence 4699999999998421 0139999999887531 00 000 01223466
Q ss_pred ccccCcCcCCCchhHHHHHHHcCCCchhhhhcCCChH--HHHHHHHHc-ccccCCCceEEEecc-chhHHHHHHHhh--C
Q 023614 109 FKDFDIARHAHALDSVELLKRQGIDFEKNREFGIDSV--RFAELLMSS-GLVLNKDVTWVTFHS-AYDFGYLVKCLT--Q 182 (280)
Q Consensus 109 F~~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~~~--~f~e~l~~S-glv~~~~v~Wvtfhg-~yD~gyL~k~l~--~ 182 (280)
.+ ..... ...+.+.+ -+||.=..+...|.+.. ...+.+..- +-+ .+...+|++++ .+|+.||.+.+. |
T Consensus 64 ~l-v~P~~-~i~~~~~~---i~GIt~~~l~~~~~p~f~~~v~~~l~~fl~~~-~~~~~lVahN~~~FD~~fL~~~~~~~g 137 (238)
T 1y97_A 64 LC-MCPER-PFTAKASE---ITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQ-AGPICLVAHNGFDYDFPLLCAELRRLG 137 (238)
T ss_dssp EE-CCCSS-CCCHHHHH---HHCCCHHHHHHTTCCCSCHHHHHHHHHHHTTS-CSSEEEEETTTTTTHHHHHHHHHHHHT
T ss_pred EE-ECCCC-cCCHHHHH---HhCCCHHHHhhcCCCccHHHHHHHHHHHHHhC-CCCCEEEecCchhhhHHHHHHHHHHcC
Confidence 55 44333 34555554 48998888877776642 333322210 001 12357888888 999999987764 3
Q ss_pred CCCCCCHHHHHHHHhhhcCCCccchHHHHHhhc----------cc-cchHHHHHHH-cCCCccCCCccchhhhHHHHHHH
Q 023614 183 RVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCT----------CL-YGGLDRVCKA-LGVERVVGKSHQAGSDSLLTLHA 250 (280)
Q Consensus 183 ~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~----------~l-~~~L~~la~~-L~v~r~~g~~hqAGsDs~lT~~~ 250 (280)
.++|.. ..+.||-.+++... ++ ..+|..+++. +|++. ...|.|-.|++.|+.+
T Consensus 138 ~~~~~~-------------~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~--~~~H~Al~Da~~ta~l 202 (238)
T 1y97_A 138 ARLPRD-------------TVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEP--SAAHSAEGDVHTLLLI 202 (238)
T ss_dssp CCCCTT-------------CEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCC--C---CHHHHHHHHHHH
T ss_pred CCCCCC-------------CEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCC--ccCccHHHHHHHHHHH
Confidence 444421 22678877776652 22 3579999995 99986 4579999999999999
Q ss_pred HHHHHHhhC
Q 023614 251 FLKIKDKHF 259 (280)
Q Consensus 251 F~~l~~~~~ 259 (280)
|.+|.+.++
T Consensus 203 ~~~l~~~~~ 211 (238)
T 1y97_A 203 FLHRAAELL 211 (238)
T ss_dssp HHHTHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 17
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.38 E-value=8e-06 Score=76.77 Aligned_cols=175 Identities=14% Similarity=0.053 Sum_probs=116.3
Q ss_pred CCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccC-CCCCCCCCCCCCceEEEEeccccCcCc
Q 023614 38 YPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDE-EGNLPDLGSGSTYYIWEFNFKDFDIAR 116 (280)
Q Consensus 38 ~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~-~g~~p~~~~~~~~~~wqFNF~~F~~~~ 116 (280)
-.||+||+|.+|+...+. ...-.|||+|+..++. +|+ ..-.|+.+ .....
T Consensus 128 ~~~vviD~ETTGl~~~~~------------------~~~deIIEIgaV~vd~~~g~----------i~~~f~~l-VkP~~ 178 (349)
T 1zbu_A 128 DYICIIDFEATCEEGNPP------------------EFVHEIIEFPVVLLNTHTLE----------IEDTFQQY-VRPEI 178 (349)
T ss_dssp SEEEECCCEECCCTTCCT------------------TCCCCEEECCEEEEETTTTE----------EEEEECCB-EECSS
T ss_pred CeEEEEEEecCCCCCcCC------------------CCCCeEEEEEEEEEECCCce----------EeEEEEEE-ECCCC
Confidence 368999999999843210 0112499999999985 343 33456665 33333
Q ss_pred C-CCchhHHHHHHHcCCCchhhhhcCCChHHHH----HHHHHcccccCCCceEEEeccchhHH-HHHHHhh--CCCCCCC
Q 023614 117 H-AHALDSVELLKRQGIDFEKNREFGIDSVRFA----ELLMSSGLVLNKDVTWVTFHSAYDFG-YLVKCLT--QRVLPEK 188 (280)
Q Consensus 117 d-~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~----e~l~~Sglv~~~~v~Wvtfhg~yD~g-yL~k~l~--~~~LP~~ 188 (280)
. ...+.+.+. +||.=..+. .+.+..... +.+....+- .+....|++++.+|+. ||-+.+. |.++|.
T Consensus 179 ~~~I~~~~t~i---hGIT~e~v~-~ap~~~eVl~~f~~~l~~~~~~-~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~- 252 (349)
T 1zbu_A 179 NTQLSDFCISL---TGITQDQVD-RADTFPQVLKKVIDLMKLKELG-TKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPP- 252 (349)
T ss_dssp SCSCCHHHHHH---HCCCHHHHH-TSEEHHHHHHHHHHHHHHTTBT-TTBCEEEEESSSHHHHTHHHHHHHHTTBCCCG-
T ss_pred CCCCCHHHHHH---hCCCHHHHh-CCCCHHHHHHHHHHHHhccccc-CCCcEEEEECcHhhHHHHHHHHHHHhCCCCcc-
Confidence 2 456666555 788876664 466655433 333332211 1224678888999999 9877654 345552
Q ss_pred HHHHHHHHhhhcCCCccchHHHHHhhcccc---chHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhhC
Q 023614 189 LSEFVTRVGVFFGEKVYDVKHLIRFCTCLY---GGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 189 ~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~---~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
++-. +.|++.+.....++. .+|..+++.+|++. .|..|.|-.|+..|+.+|.+|.+...
T Consensus 253 ----------~~~~-~iDt~~l~~~~~~~~~~~~~L~~l~~~~gi~~-~g~~HrAl~DA~ata~ll~~ll~~~~ 314 (349)
T 1zbu_A 253 ----------FAKK-WINIRKSYGNFYKVPRSQTKLTIMLEKLGMDY-DGRPHCGLDDSKNIARIAVRMLQDGC 314 (349)
T ss_dssp ----------GGSE-EEEHHHHHHHHHTCCGGGGSHHHHHHHTTCCC-CSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ----------ccch-HHHHHHHHHHHhcCCCCCCCHHHHHHHcCCCC-CCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 1223 789988766553332 47999999999998 78889999999999999999988754
No 18
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.38 E-value=3.9e-06 Score=82.11 Aligned_cols=177 Identities=19% Similarity=0.149 Sum_probs=114.5
Q ss_pred hhhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCCCCCCCCCceEEEEeccccCc
Q 023614 35 IDRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDI 114 (280)
Q Consensus 35 i~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~ 114 (280)
+++.+||++|+|.+|+... . -.|||+|...++.+|+.-. -.|+.+ ...
T Consensus 6 ~~~~~~vv~DlETTGl~p~-------~---------------d~IIEIgaV~vd~~g~ii~---------~~f~~l-VkP 53 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPA-------L---------------DRPAQFAAIRTDSEFNVIG---------EPEVFY-CKP 53 (482)
T ss_dssp -CCCEEEEEEEEESSSCTT-------T---------------SCEEEEEEEEECTTSCBCS---------CCEEEE-BCC
T ss_pred CCCCCEEEEEEECCCCCCC-------C---------------CeEEEEEEEEEECCCeEEe---------eeeEEE-ECC
Confidence 4567899999999998321 0 1499999999987776421 125555 444
Q ss_pred CcCC-CchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCCCceEEEecc-chhHHHHHHHhhCCCCCCCHHHH
Q 023614 115 ARHA-HALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHS-AYDFGYLVKCLTQRVLPEKLSEF 192 (280)
Q Consensus 115 ~~d~-~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~~v~Wvtfhg-~yD~gyL~k~l~~~~LP~~~~~F 192 (280)
..+. .+++++ .-+||.=..+...|.+...+.+.+.. .+..++..+|+++| .+|+.+|-+.+...-+|.-.
T Consensus 54 ~~~ilp~p~a~---~IhGIT~e~l~~ap~~~~evl~~f~~--~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~--- 125 (482)
T 2qxf_A 54 ADDYLPQPGAV---LITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA--- 125 (482)
T ss_dssp CTTCCCCHHHH---HHHCCCHHHHHHHCBCHHHHHHHHHH--HHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSG---
T ss_pred CCCCCCCHHHH---HHhCCCHHHHhcCCCCHHHHHHHHHH--HHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccc---
Confidence 4443 356776 44999999998889985554443321 11113457888874 89999998877632222100
Q ss_pred HHHHhhh-cCCCccchHHHHHhhc--------------cc-cchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHH
Q 023614 193 VTRVGVF-FGEKVYDVKHLIRFCT--------------CL-YGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKD 256 (280)
Q Consensus 193 ~~~l~~~-Fp~~iyD~K~la~~~~--------------~l-~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~ 256 (280)
..+ .+...+||--+++.+. +. .-+|+.+++.+|++. +.+|.|-+|++.|+.+|.+|++
T Consensus 126 ----~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~Gi~~--~~aHrAL~DA~aTa~l~~~l~~ 199 (482)
T 2qxf_A 126 ----WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH--SNAHDAMADVYATIAMAKLVKT 199 (482)
T ss_dssp ----GGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHTTCCC--C---CTTHHHHHHHHHHHHHHH
T ss_pred ----cccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHcCCCC--CCCCCHHHHHHHHHHHHHHHHH
Confidence 011 0122567766666543 11 236999999999987 4579999999999999999986
Q ss_pred h
Q 023614 257 K 257 (280)
Q Consensus 257 ~ 257 (280)
.
T Consensus 200 ~ 200 (482)
T 2qxf_A 200 R 200 (482)
T ss_dssp H
T ss_pred h
Confidence 5
No 19
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.36 E-value=4e-06 Score=77.86 Aligned_cols=179 Identities=15% Similarity=0.089 Sum_probs=112.5
Q ss_pred CeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCC-------CCCCCC-CCceEEEEecc
Q 023614 39 PIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNL-------PDLGSG-STYYIWEFNFK 110 (280)
Q Consensus 39 ~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~-------p~~~~~-~~~~~wqFNF~ 110 (280)
.||.+|+|-+|+.... =.|||+|+..++.++.. +..... ....+-.|+..
T Consensus 13 tfVv~DlETTGL~~~~----------------------d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~l 70 (314)
T 3u3y_B 13 TLIFLDLEATGLPSSR----------------------PEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLC 70 (314)
T ss_dssp EEEEEEEEESSCGGGC----------------------CCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEE
T ss_pred CEEEEEEECCCCCCCC----------------------CeEEEEEEEEEECCccccccccccccccccccceeeeeEEEE
Confidence 5999999999985321 13999999988754210 000000 01234556665
Q ss_pred ccCcCcCCCchhHHHHHHHcCCCchhhhhcCCC-h-HHHHHHHHH--cccccCCCceEEEecc-chhHHHHHHHhhC--C
Q 023614 111 DFDIARHAHALDSVELLKRQGIDFEKNREFGID-S-VRFAELLMS--SGLVLNKDVTWVTFHS-AYDFGYLVKCLTQ--R 183 (280)
Q Consensus 111 ~F~~~~d~~~~~Si~fL~~~G~DF~k~~~~GI~-~-~~f~e~l~~--Sglv~~~~v~Wvtfhg-~yD~gyL~k~l~~--~ 183 (280)
.+.. ..+.+++.+. |||.=+.+...|++ . ....+.+.. .+. .+...+|+++| .||++||-+.+.. .
T Consensus 71 -I~P~-~~I~~~a~~I---hGIT~e~l~~aG~P~f~~ev~~~l~~fL~~~--~~~~vLVAHNga~FD~~FL~~el~r~Gl 143 (314)
T 3u3y_B 71 -IAPG-KACSPGASEI---TGLSKAELEVQGRQRFDDNLAILLRAFLQRQ--PQPCCLVAHNGDRYDFPLLQTELARLST 143 (314)
T ss_dssp -CBCS-SCCCHHHHHH---HSCCHHHHHHTTCCBSCHHHHHHHHHHHHTS--CSSEEEEETTTTTTHHHHHHHHHHTSSS
T ss_pred -ECCC-CCCCHHHHHh---cCCCHHHHHhCCCCCcHHHHHHHHHHHHhcC--CCCcEEEEeCcHHHHHHHHHHHHHHcCC
Confidence 4443 2456666655 99999999999985 3 243333221 111 12357888885 8999999888864 2
Q ss_pred CCCCCHHHHHHHHhhhcCCCccchHHHHHhh-c----c-----ccchHHHHHHH-cCCCccCCCccchhhhHHHHHHHHH
Q 023614 184 VLPEKLSEFVTRVGVFFGEKVYDVKHLIRFC-T----C-----LYGGLDRVCKA-LGVERVVGKSHQAGSDSLLTLHAFL 252 (280)
Q Consensus 184 ~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~-~----~-----l~~~L~~la~~-L~v~r~~g~~hqAGsDs~lT~~~F~ 252 (280)
++|.. +....|+--+++.+ + + -+-+|..+++. +|++. ...|.|-+|++.|+++|.
T Consensus 144 ~~~~~------------~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~--~~aHrAl~DA~ata~lf~ 209 (314)
T 3u3y_B 144 PSPLD------------GTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAP--TDSHTAEGHVLTLLSICQ 209 (314)
T ss_dssp CCTTT------------TCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCC--SCSSSHHHHHHHHHHHHH
T ss_pred CCCCC------------CceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCC--CCCCCHHHHHHHHHHHHH
Confidence 33210 11134554433311 1 1 13479999999 99987 358999999999999999
Q ss_pred HHHHhhCC
Q 023614 253 KIKDKHFG 260 (280)
Q Consensus 253 ~l~~~~~~ 260 (280)
++.+.+..
T Consensus 210 ~l~~~~l~ 217 (314)
T 3u3y_B 210 WKPQALLQ 217 (314)
T ss_dssp SSHHHHHH
T ss_pred HHHHHHHH
Confidence 99988753
No 20
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=98.01 E-value=4.5e-05 Score=64.91 Aligned_cols=158 Identities=13% Similarity=0.086 Sum_probs=95.9
Q ss_pred hCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCCCCCCCCCceEEEEeccccCcCc
Q 023614 37 RYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIAR 116 (280)
Q Consensus 37 ~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~ 116 (280)
..+||++|+|.+|+... . .-.|||+|+. +.+|+ .+ |+.+ .....
T Consensus 4 ~~~~vviD~ETTGl~~~----------~-----------~~~iiei~~v--~~~g~----------~i--~~~l-V~P~~ 47 (189)
T 1wlj_A 4 SREVVAMDCEMVGLGPH----------R-----------ESGLARCSLV--NVHGA----------VL--YDKF-IRPEG 47 (189)
T ss_dssp --CEEEEEEEEEEETTT----------T-----------EEEEEEEEEE--CTTCC----------EE--EEEE-EECSS
T ss_pred CCeEEEEEeECcCcCCC----------C-----------CceEEEEEEE--eCCCC----------EE--EeeE-ecCCC
Confidence 45899999999998321 0 1237799874 44553 22 4443 22222
Q ss_pred CCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHHcccccCCCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHH
Q 023614 117 HAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMSSGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRV 196 (280)
Q Consensus 117 d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~Sglv~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l 196 (280)
...+.+.++ +||.=+.+.. +.+.....+.+.. .+ . +..+|+++..+|+.+|-+ .+|.
T Consensus 48 -~i~~~~~~i---~GIt~~~l~~-a~~~~~v~~~~~~--~l-~-~~~lV~hn~~fD~~~L~~-----~~~~--------- 104 (189)
T 1wlj_A 48 -EITDYRTRV---SGVTPQHMVG-ATPFAVARLEILQ--LL-K-GKLVVGHDLKHDFQALKE-----DMSG--------- 104 (189)
T ss_dssp -CEEECCHHH---HCCCHHHHTT-CEEHHHHHHHHHH--HH-T-TSEEEESSHHHHHHHTTC-----CCTT---------
T ss_pred -CCCccccCC---CCCCHHHHcC-CCCHHHHHHHHHH--HH-C-CCEEEECCcHHHHHHHHH-----hCCC---------
Confidence 233334333 7776555543 5555443333222 11 1 346777777899988743 2342
Q ss_pred hhhcCCCccchHHHHHhhc--cc----cchHHHHHHH-cCCCccCCC--ccchhhhHHHHHHHHHHHHHhhC
Q 023614 197 GVFFGEKVYDVKHLIRFCT--CL----YGGLDRVCKA-LGVERVVGK--SHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 197 ~~~Fp~~iyD~K~la~~~~--~l----~~~L~~la~~-L~v~r~~g~--~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
.. ++||..+....+ .+ ..+|..+++. ||++. .+. .|.|-.|+..|+.+|.+|++.+.
T Consensus 105 ----~~-~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~-~~~~~~H~Al~Da~ata~l~~~l~~~~~ 170 (189)
T 1wlj_A 105 ----YT-IYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSI-QNSLLGHSSVEDARATMELYQISQRIRA 170 (189)
T ss_dssp ----CE-EEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCC-SCCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ----Cc-eechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCC-CCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 13 778866533221 22 4579999998 89987 443 89999999999999999998865
No 21
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=98.01 E-value=0.00012 Score=61.45 Aligned_cols=170 Identities=14% Similarity=0.101 Sum_probs=98.9
Q ss_pred hCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCCCCCCCCCceEEEEeccccCcCc
Q 023614 37 RYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIAR 116 (280)
Q Consensus 37 ~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~~ 116 (280)
+-+||++|+|.+|+... . -.|||+|...++.+|+. ..-.|+.+ .....
T Consensus 4 ~~~~v~iD~ETTGl~~~-------~---------------~~IieIg~v~~~~~~~~---------~~~~~~~l-v~P~~ 51 (180)
T 2igi_A 4 ENNLIWIDLEMTGLDPE-------R---------------DRIIEIATLVTDANLNI---------LAEGPTIA-VHQSD 51 (180)
T ss_dssp GGCEEEEEEEESSSCTT-------T---------------CCEEEEEEEEECTTCCE---------EEEEEEEE-CCCCH
T ss_pred CCcEEEEEeeCCCCCCC-------C---------------CceEEEEEEEEcCCCcE---------ecCCcceE-ECCCH
Confidence 45899999999998321 0 13999999988766532 22236655 33322
Q ss_pred C---CCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHH--cccccCCCceEEEeccchhHHHHHHHhhCCCCCCCHHH
Q 023614 117 H---AHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMS--SGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 191 (280)
Q Consensus 117 d---~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~--Sglv~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~ 191 (280)
. ..++.+.+.-.-+||.=.. .+.|.+.....+.+.. .+.....+..+|.++..+|+.+|-+.+-.
T Consensus 52 ~i~~~i~~~~~~~~~itGIt~~~-l~~~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~~fD~~fL~~~~~~--------- 121 (180)
T 2igi_A 52 EQLALMDDWNVRTHTASGLVERV-KASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPE--------- 121 (180)
T ss_dssp HHHTTCCHHHHHHHHHTTHHHHH-HHCCCCHHHHHHHHHHHHTTTSCTTTSCEEESSHHHHHHHHHHHCHH---------
T ss_pred HHhhcCCHHHHHHHHHcCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHHHHHHHHHHHH---------
Confidence 1 2334444433346776544 3456666554433322 11111113466776668999999876521
Q ss_pred HHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhhC
Q 023614 192 FVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 192 F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
+...++..+.|+..|....+.+..++. .+++ ....|.|-.|+..|+.+|.++++.+|
T Consensus 122 ----~~~~~~~~~~d~~tl~~l~~~~~p~~~-----~~i~--~~~~H~Al~Da~ata~l~~~~~~~~~ 178 (180)
T 2igi_A 122 ----LEAYFHYRYLDVSTLKELARRWKPEIL-----DGFT--KQGTHQAMDDIRESVAELAYYREHFI 178 (180)
T ss_dssp ----HHHHSCSCEEETHHHHHHHHHHCGGGG-----GGSC--CCCCCCHHHHHHHHHHHHHHHHHHTB
T ss_pred ----hccCCCcceeeHHHHHHHHHHhChHhh-----hCCC--CcCCcCcHHHHHHHHHHHHHHHHHhh
Confidence 123455447885544322222222221 1453 35589999999999999999999876
No 22
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=97.60 E-value=0.00088 Score=57.09 Aligned_cols=171 Identities=12% Similarity=0.105 Sum_probs=97.6
Q ss_pred hhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCCCCCCCCCceEEEEeccccCcC
Q 023614 36 DRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIA 115 (280)
Q Consensus 36 ~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~ 115 (280)
...+||++|+|-+|+... . + .|||+|.... +|+.. ...-.|+.. .+..
T Consensus 7 ~~~~~vviD~ETTGl~p~-------~--d-------------~IieIgav~~--~~~~~-------~~~~~~~~~-v~p~ 54 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTD-------R--D-------------SIIEIATIVT--DAQLN-------VLAEGPELA-IAHS 54 (194)
T ss_dssp -CCEEEEEEEEESCSCTT-------T--C-------------CEEEEEEEEE--ETTCC-------EEEECCCEE-CCCC
T ss_pred CCCCEEEEEeECCCCCCC-------C--C-------------ccEEEEEEEE--cCCcc-------eeccCceEE-EeCC
Confidence 556899999999998421 0 1 3999998774 44321 122234444 2222
Q ss_pred cCC---CchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHH--cccccCCCceEEEeccchhHHHHHHHhhCCCCCCCHH
Q 023614 116 RHA---HALDSVELLKRQGIDFEKNREFGIDSVRFAELLMS--SGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLS 190 (280)
Q Consensus 116 ~d~---~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~--Sglv~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~ 190 (280)
... .++...+.-.-+||.=.. .+.+.+.....+.+.. .+-+......+|.++..+|++||-+-+-.
T Consensus 55 ~~i~~~~~~~~~~~~~itGIt~~~-l~~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~~FD~~fL~~~~~~-------- 125 (194)
T 2gbz_A 55 LETLEAMDEWNRNQHRRSGLWQRV-LDSQVTHAQAEAQTVAFLGEWIRAGASPMCGNSICQDRRFLHRQMSR-------- 125 (194)
T ss_dssp HHHHHTSCSHHHHHHHHHTHHHHH-HHCCCCHHHHHHHHHHHHTTTCCTTSSCEEESSHHHHHHHHHHHCHH--------
T ss_pred HHHhhccchHHHHHHHhhCCCHHH-HhcCCCHHHHHHHHHHHHHHhCCCCCceEEecCHHHhHHHHHHHHHH--------
Confidence 111 122222223347776443 4557776654443322 12222223358888889999999886531
Q ss_pred HHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhhC
Q 023614 191 EFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 191 ~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
+..+++.+..|+..+.+.+..+...| ++ +++ ....|.|-+|+..|+.+|..+++.++
T Consensus 126 -----~~~~~~~~~~d~~~l~~l~~~~~p~~---~~--~i~--~~~~H~Al~Da~ata~ll~~~~~~~~ 182 (194)
T 2gbz_A 126 -----LERYFHYRNLDVSTIKELARRWAPAV---AS--GFA--KSSAHTALSDVRDSIDELRHYRQFMG 182 (194)
T ss_dssp -----HHHHSCSCEEEHHHHHHHHHHHCGGG---GT--TCC--CCSCCSHHHHHHHHHHHHHHHHTTSH
T ss_pred -----hcccCCCccccHHHHHHHHHHhCHHH---Hh--CCC--CCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 12345544778876544333222221 11 243 35679999999999999999999876
No 23
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=97.52 E-value=0.0039 Score=53.36 Aligned_cols=174 Identities=14% Similarity=0.121 Sum_probs=105.9
Q ss_pred hhCCeeEeeeccccccccCCCCCCCCChhhhHHHHHhccccccceeeeeeeccCCCCCCCCCCCCCceEEEEeccccCcC
Q 023614 36 DRYPIISMDTEFPGVVVRPDSNIRHRDPAANYNGLKANVDLLNLIQIGLTLSDEEGNLPDLGSGSTYYIWEFNFKDFDIA 115 (280)
Q Consensus 36 ~~~~fIAiDtEFpGv~~~~~~~~~~~~~e~rY~~lk~nVd~~~iiQlGlt~~~~~g~~p~~~~~~~~~~wqFNF~~F~~~ 115 (280)
.+.+||++|+|-||+.... . .|||+|.-..+.+++. ..-.+++..-+..
T Consensus 7 ~~~~~v~~D~ETTGL~p~~------d----------------~IiEIgaV~~d~~~~i---------~~~~~~~~i~~p~ 55 (186)
T 3tr8_A 7 SDDNLIWLDLEMTGLDPER------D----------------RIIEIATIVTNSHLDI---------LAEGPAFAIHQPD 55 (186)
T ss_dssp CTTCEEEEEEEESSSCTTT------C----------------CEEEEEEEEECTTCCE---------EEECCCEECCCCH
T ss_pred CCCcEEEEEEECCCCCCCC------C----------------ceEEEEEEEEcCCeEE---------eeeeEEEEEeCCc
Confidence 3568999999999994321 1 3999999866544331 1111233211221
Q ss_pred c--CCCchhHHHHHHHcCCCchhhhhcCCChHHHHHHHHH--cccccCCCceEEEeccchhHHHHHHHhhCCCCCCCHHH
Q 023614 116 R--HAHALDSVELLKRQGIDFEKNREFGIDSVRFAELLMS--SGLVLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSE 191 (280)
Q Consensus 116 ~--d~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~e~l~~--Sglv~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~ 191 (280)
+ +...+.+.+--.-+||. ++..+.|.+.....+.+.. .+-+...+...|.++-.+|.+||-+-+-
T Consensus 56 ~~l~~~~~~~~~ih~ltGIt-~~~l~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~~FD~~FL~~~~~---------- 124 (186)
T 3tr8_A 56 KLLTAMDNWNTSHHTASGLL-ERVKNSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSVCQDRRFLSRYMP---------- 124 (186)
T ss_dssp HHHTTSCHHHHHHHHHTSHH-HHHHTCCCCHHHHHHHHHHHHTTTSCTTCSCEEESSTHHHHHHHHHHCH----------
T ss_pred cccccCCcccHHHHhccCCC-HHHHhcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcHHHhHHHHHHHHH----------
Confidence 1 12344455555567887 7777888888776655443 1112123445666666899999987642
Q ss_pred HHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHcCCCccCCCccchhhhHHHHHHHHHHHHHhhCCC
Q 023614 192 FVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKALGVERVVGKSHQAGSDSLLTLHAFLKIKDKHFGN 261 (280)
Q Consensus 192 F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L~v~r~~g~~hqAGsDs~lT~~~F~~l~~~~~~~ 261 (280)
.+...|+.++.|+-.|.+..+.+..++.. +++ ....|.|=+|+.-|...+.-.++.+|..
T Consensus 125 ---~~~~~~~~~~iDvsTl~elar~~~P~~~~-----~~~--~~~~HrAl~Da~ati~~l~~y~~~~~~~ 184 (186)
T 3tr8_A 125 ---RLNQFFHYRHLDVTTLKILAQRWAPQIAA-----AHI--KESQHLALQDIRDSIEELRYYRAHLLNL 184 (186)
T ss_dssp ---HHHHHSCSCEEEHHHHHHHHHHHCHHHHT-----TSC--CCCCSCHHHHHHHHHHHHHHHHHHTBCC
T ss_pred ---HcCCCCCCcEEeHHHHHHHHHHHCccccc-----cCC--CCCCcChHHHHHHHHHHHHHHHHHhhcc
Confidence 23456766689944333222233334432 444 3568999999999999999999988854
No 24
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=95.97 E-value=0.17 Score=50.36 Aligned_cols=86 Identities=20% Similarity=0.179 Sum_probs=63.4
Q ss_pred ccCCCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhcc-c-cchHHHHHHHc-CCCcc
Q 023614 157 VLNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTC-L-YGGLDRVCKAL-GVERV 233 (280)
Q Consensus 157 v~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~-l-~~~L~~la~~L-~v~r~ 233 (280)
+.++++.||.++..+|+.+|.+ .|-++| +. ++||..++..+.. . ..+|..|++.+ +++.
T Consensus 86 L~d~~i~kV~hnak~D~~~L~~--~Gi~l~--------------~~-~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~- 147 (605)
T 2kfn_A 86 LEDEKALKVGQNLKYDRGILAN--YGIELR--------------GI-AFDTMLESYILNSVAGRHDMDSLAERWLKHKT- 147 (605)
T ss_dssp HTCTTSCEEESSHHHHHHHHHT--TTCCCC--------------CE-EEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCC-
T ss_pred HcCCCCeEEEECcHHHHHHHHH--CCCCCC--------------Cc-cccHHHHHHHhCCCCCCCCHHHHHHHhcCCCc-
Confidence 3356789999999999999876 243332 13 7999999888753 2 46899999986 7763
Q ss_pred C------C--C-------------ccchhhhHHHHHHHHHHHHHhhCC
Q 023614 234 V------G--K-------------SHQAGSDSLLTLHAFLKIKDKHFG 260 (280)
Q Consensus 234 ~------g--~-------------~hqAGsDs~lT~~~F~~l~~~~~~ 260 (280)
+ | . .|-|..|+..|...|.+|.+..-.
T Consensus 148 i~~~~~~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~ 195 (605)
T 2kfn_A 148 ITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK 195 (605)
T ss_dssp CCHHHHHCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred ccHHHHhCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1 1 145899999999999999887643
No 25
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=91.76 E-value=2.3 Score=40.57 Aligned_cols=85 Identities=16% Similarity=0.153 Sum_probs=58.7
Q ss_pred cCCCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHH-cCCCccCC-
Q 023614 158 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKA-LGVERVVG- 235 (280)
Q Consensus 158 ~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~-L~v~r~~g- 235 (280)
.++++.+|.+...+|+-.|.+-+ |- . |.+++||...+..+..-..||..|++. ||++-.-+
T Consensus 179 ~dp~i~KV~H~~k~Dl~~L~~~~-Gi---------------~-~~~~fDT~lAa~lL~~~~~gL~~Lv~~~Lg~~l~K~~ 241 (428)
T 3saf_A 179 TDPAIVKVFHGADSDIEWLQKDF-GL---------------Y-VVNMFDTHQAARLLNLGRHSLDHLLKLYCNVDSNKQY 241 (428)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CC---------------C-CSSEEEHHHHHHHTTCSCCSHHHHHHHHHCCCCCCTT
T ss_pred cCCCceEEEeehHHHHHHHHHHc-CC---------------C-cCceeechhHHHHhCCCCCCHHHHHHHHcCCCCCccc
Confidence 36788888888889987765443 21 1 233899999888875334689999876 67542101
Q ss_pred -------------CccchhhhHHHHHHHHHHHHHhhC
Q 023614 236 -------------KSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 236 -------------~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
..+-|..|+..+.+.|-+|+...-
T Consensus 242 ~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~ 278 (428)
T 3saf_A 242 QLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMW 278 (428)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 013488999999999999987754
No 26
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=66.19 E-value=18 Score=34.03 Aligned_cols=85 Identities=14% Similarity=0.150 Sum_probs=60.3
Q ss_pred cCCCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHc-CCCccCC-
Q 023614 158 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKAL-GVERVVG- 235 (280)
Q Consensus 158 ~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L-~v~r~~g- 235 (280)
.++++.+|.+...+|+-.|.+-+ |- -|.+++||...+..+..-+.||..|++.+ ++.-.-|
T Consensus 156 ~d~~i~KV~h~~k~Dl~~L~~~~-Gi----------------~~~~~fDt~lAa~LL~~~~~~L~~L~~~~lg~~l~K~~ 218 (410)
T 2hbj_A 156 TNPSIVKVFHGAFMDIIWLQRDL-GL----------------YVVGLFDTYHASKAIGLPRHSLAYLLENFANFKTSKKY 218 (410)
T ss_dssp TCTTSEEEESSCHHHHHHHHHHH-CC----------------CCSSEEEHHHHHHHHTCSCCSHHHHHHHHSCCCCCCTT
T ss_pred cCCCceEEEEehHHHHHHHHHHc-CC----------------CcCCEEEcHHHHHHhCCCccCHHHHHHHHcCCCCCccc
Confidence 36788999988889988887643 21 12339999988887753357899999875 6542111
Q ss_pred -------------CccchhhhHHHHHHHHHHHHHhhC
Q 023614 236 -------------KSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 236 -------------~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
..+-|..|++.+..++-+|++..-
T Consensus 219 ~~sdW~~rpL~~~q~~YAa~Da~~ll~L~~~L~~~L~ 255 (410)
T 2hbj_A 219 QLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLI 255 (410)
T ss_dssp TTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112378999999999999888764
No 27
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=46.57 E-value=61 Score=29.62 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccc-cchHHHHHHHc-CCCccCC-
Q 023614 159 NKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCL-YGGLDRVCKAL-GVERVVG- 235 (280)
Q Consensus 159 ~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l-~~~L~~la~~L-~v~r~~g- 235 (280)
++++.+|.+...+|+-.|.+.+ |-. |..+|||...+..+..- ..||..|++.. |+.-.-+
T Consensus 72 d~~i~Kv~h~~k~Dl~~L~~~~-Gi~----------------~~~~fDt~lAa~lL~~~~~~~L~~L~~~~l~~~l~K~~ 134 (375)
T 1yt3_A 72 DPSITKFLHAGSEDLEVFLNVF-GEL----------------PQPLIDTQILAAFCGRPMSWGFASMVEEYSGVTLDKSE 134 (375)
T ss_dssp CTTSEEEESSCHHHHHHHHHHH-SSC----------------CSSEEEHHHHHHHTTCCTTCCHHHHHHHHHCCCCCCTT
T ss_pred CCCceEEEeeHHHHHHHHHHHc-CCC----------------CCcEEEcHHHHHHcCCCCChhHHHHHHHHcCCCCCCCc
Confidence 6678899888889988886633 211 22389999888877432 46899999864 6542111
Q ss_pred -------------CccchhhhHHHHHHHHHHHHHhhC
Q 023614 236 -------------KSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 236 -------------~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
..+-|..|++.+..++-+|++..-
T Consensus 135 ~~sdw~~rpL~~~q~~YAa~Da~~l~~L~~~L~~~L~ 171 (375)
T 1yt3_A 135 SRTDWLARPLTERQCEYAAADVWYLLPITAKLMVETE 171 (375)
T ss_dssp TTSCTTSSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112378899999999999987753
No 28
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=41.80 E-value=46 Score=28.14 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=56.8
Q ss_pred cCCCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHh-hcc---ccchHHHHHHH-cCCCc
Q 023614 158 LNKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRF-CTC---LYGGLDRVCKA-LGVER 232 (280)
Q Consensus 158 ~~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~-~~~---l~~~L~~la~~-L~v~r 232 (280)
.+++++.|.+....|+..|.+-+ |- -|.+++|+..++.. +.. ..-||+.++++ ||++-
T Consensus 105 ~d~~i~Kvg~~~~~D~~~L~~~~-g~----------------~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~l 167 (206)
T 1vk0_A 105 ASKFVTFVGVQIEEDLDLLRENH-GL----------------VIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDL 167 (206)
T ss_dssp TCSSSEEEESSCHHHHHHHHHHH-CC----------------CCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCC
T ss_pred cCCCceEEEeccHHHHHHHHHhc-CC----------------CcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcC
Confidence 47788888888899999886654 21 13349999877644 432 35689998875 66532
Q ss_pred -c-------------CCCccchhhhHHHHHHHHHHHHH
Q 023614 233 -V-------------VGKSHQAGSDSLLTLHAFLKIKD 256 (280)
Q Consensus 233 -~-------------~g~~hqAGsDs~lT~~~F~~l~~ 256 (280)
. ....+-|-.|++....+|.+|++
T Consensus 168 K~k~~~~SdW~~pLs~~Qi~YAA~Da~~l~~l~~~L~~ 205 (206)
T 1vk0_A 168 GQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSD 205 (206)
T ss_dssp HHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 0 01224589999999999999864
No 29
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=33.14 E-value=36 Score=24.40 Aligned_cols=37 Identities=16% Similarity=0.194 Sum_probs=29.6
Q ss_pred chhHHHHHHHcCCCch-----------------hhhhcCCChHHHHHHHHHccc
Q 023614 120 ALDSVELLKRQGIDFE-----------------KNREFGIDSVRFAELLMSSGL 156 (280)
Q Consensus 120 ~~~Si~fL~~~G~DF~-----------------k~~~~GI~~~~f~e~l~~Sgl 156 (280)
-|++++.|.+.|||+= -...+||+...+-+.|...|.
T Consensus 22 ~P~~~~vl~~~G~~~l~~p~~~~~~g~~~TL~~aa~~~gid~d~l~~~L~~~g~ 75 (81)
T 2fi0_A 22 HPEVLEILVELGFKPLANPLMRNTVGRKVSLKQGSKLAGTPMDKIVRTLEANGY 75 (81)
T ss_dssp CGGGHHHHTTTTCGGGGSHHHHTTHHHHCBHHHHHHHHTCCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCCccccCcHHHhhhcccCcHHHHHHHcCCCHHHHHHHHHHcCC
Confidence 4788999999998874 236789999999888887775
No 30
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=27.93 E-value=76 Score=22.62 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHHHcCCCccCCC---ccchhhhHHHHHHHHHHHHHhh
Q 023614 224 VCKALGVERVVGK---SHQAGSDSLLTLHAFLKIKDKH 258 (280)
Q Consensus 224 la~~L~v~r~~g~---~hqAGsDs~lT~~~F~~l~~~~ 258 (280)
+++.|+++. ++. -...|.||+++.+.-.+|++.+
T Consensus 25 ~~~vL~~~~-i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 61 (93)
T 4i4d_A 25 WAETLGRDS-VGPHEDFAALGGNSIHAIXITNRVEELV 61 (93)
T ss_dssp HHHHHTCSC-CCTTCCTTTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCC-CCCCCCHHHcCCcHHHHHHHHHHHHHHh
Confidence 467788876 554 3579999999999999999876
No 31
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=27.55 E-value=61 Score=23.19 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=27.3
Q ss_pred HHHHcCCCccCCC---ccchhhhHHHHHHHHHHHHHhh
Q 023614 224 VCKALGVERVVGK---SHQAGSDSLLTLHAFLKIKDKH 258 (280)
Q Consensus 224 la~~L~v~r~~g~---~hqAGsDs~lT~~~F~~l~~~~ 258 (280)
+++.|+++. ++. --+.|.||+.+.+.-.+|++.+
T Consensus 23 ~~~vL~~~~-i~~~~~Ff~lGgdSL~a~~l~~~l~~~~ 59 (91)
T 1dny_A 23 WERVLGVSG-IGILDNFFQIGGHSLKAMAVAAQVHREY 59 (91)
T ss_dssp HHHHHTCSS-CCSSCCTTSSCCSSHHHHHHHHHHHHHC
T ss_pred HHHHhCCCC-CCCCCCHHHcCCCHHHHHHHHHHHHHHH
Confidence 467788876 554 2479999999999999999876
No 32
>1jf8_A Arsenate reductase; ptpase I fold, P-loop, sulfinic acid, oxidoreductase; 1.12A {Staphylococcus aureus} SCOP: c.44.1.1 PDB: 1jfv_A 2fxi_A 1lju_A* 1rxi_A 1rxe_A 1ljl_A 2cd7_A 1lk0_A
Probab=25.20 E-value=44 Score=25.95 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=27.6
Q ss_pred CCchhHHHHHHHcCCCchhhhhcCCChHHHH
Q 023614 118 AHALDSVELLKRQGIDFEKNREFGIDSVRFA 148 (280)
Q Consensus 118 ~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~ 148 (280)
..++.+++.|+++|+|...|+.+-|....+.
T Consensus 43 ~~~p~a~~~l~~~Gid~s~~~ar~l~~~~~~ 73 (131)
T 1jf8_A 43 GVNPKAIEAMKEVDIDISNHTSDLIDNDILK 73 (131)
T ss_dssp CCCHHHHHHHHHTTCCCTTCCCCBCCHHHHH
T ss_pred CCCHHHHHHHHHcCCCcccCccccCChHHhc
Confidence 4688999999999999999999999987764
No 33
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=24.72 E-value=45 Score=31.57 Aligned_cols=79 Identities=16% Similarity=0.129 Sum_probs=48.6
Q ss_pred eEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhccccchHHHHHHHc-CCCcc-------C
Q 023614 163 TWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTCLYGGLDRVCKAL-GVERV-------V 234 (280)
Q Consensus 163 ~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~l~~~L~~la~~L-~v~r~-------~ 234 (280)
.+|.+...+|+-.|. -.|-. |..+|||...+..+..-.-||..|++.+ |+.-. -
T Consensus 95 ~KV~h~~k~Dl~~L~--~~gi~----------------~~~~fDt~lAa~lL~~~~~gL~~L~~~~lg~~~~K~~~~sdw 156 (440)
T 3cym_A 95 VWILHDSLQDLPGFD--ELGME----------------PQRLFDTEIAARLLGLKRFGLAAVTEHFLGLTLAKEHSAADW 156 (440)
T ss_dssp EEEESSHHHHHHHHH--HHTCC----------------CCEEEEHHHHHHHTTCSSCSHHHHHHHHHCEECCCCCTTCCT
T ss_pred CEEEEcCHHHHHHHH--HcCCc----------------CCceehHHHHHHHhCCCCCCHHHHHHHHhCCCcccccccCCC
Confidence 577777778876553 22321 2238999655555532256899998875 53210 0
Q ss_pred -----C--CccchhhhHHHHHHHHHHHHHhhC
Q 023614 235 -----G--KSHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 235 -----g--~~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
. ...-|..|++.+..+|-+|.+..-
T Consensus 157 ~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~ 188 (440)
T 3cym_A 157 SYRPLPRDWRNYAALDVELLIELETKMRAELK 188 (440)
T ss_dssp TCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 113378899999999888877653
No 34
>3nuf_A PRD-containing transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PG4; 1.38A {Lactobacillus casei}
Probab=22.81 E-value=53 Score=25.82 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=15.2
Q ss_pred HHHHHHHhhCCCCCCCHHH
Q 023614 173 FGYLVKCLTQRVLPEKLSE 191 (280)
Q Consensus 173 ~gyL~k~l~~~~LP~~~~~ 191 (280)
.+++.++.+|.+||+=..+
T Consensus 59 ~Amv~Rs~~GE~LPeVd~s 77 (119)
T 3nuf_A 59 IEMLGRSKSGEQLPAVDPT 77 (119)
T ss_dssp HHHHHHHHHCCCCCCCCGG
T ss_pred HHHHHHhccCCcCCccCHH
Confidence 3688999999999985443
No 35
>2ogf_A Hypothetical protein MJ0408; structural genomics, unknown function, NYSGXRC, PSI-2, prote structure initiative; HET: MSE OXG; 1.89A {Methanocaldococcus jannaschii}
Probab=20.75 E-value=41 Score=26.54 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=33.1
Q ss_pred EeccchhHHHHHHHhhCCCC-CCCHHHHHHHHhh---hcCCCccchHH
Q 023614 166 TFHSAYDFGYLVKCLTQRVL-PEKLSEFVTRVGV---FFGEKVYDVKH 209 (280)
Q Consensus 166 tfhg~yD~gyL~k~l~~~~L-P~~~~~F~~~l~~---~Fp~~iyD~K~ 209 (280)
.|.+|.-||-|+.-++|.|. |+|.+.--+.... .=|. +.|+|.
T Consensus 24 ~FEaGIklGALyHQFvGtPV~~eta~sLE~AIE~si~~QP~-v~~v~V 70 (122)
T 2ogf_A 24 VFEGGITLGALFHQFVGTPVSKYNKESLERAIEEAMKNQPC-VYDIKV 70 (122)
T ss_dssp HHHHHHHHHHHHHHHTTCEECTTTHHHHHHHHHHHHHTSTT-EEEEEE
T ss_pred HHHhhhhhhhHhhhhcCCccCcccHHHHHHHHHHHHhcCCc-eEEEEE
Confidence 47889999999999999999 9987776655543 3366 766654
No 36
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=20.36 E-value=52 Score=21.57 Aligned_cols=19 Identities=21% Similarity=0.370 Sum_probs=16.0
Q ss_pred hhHHHHHHHcCCCchhhhh
Q 023614 121 LDSVELLKRQGIDFEKNRE 139 (280)
Q Consensus 121 ~~Si~fL~~~G~DF~k~~~ 139 (280)
.++|+-|.+.|||++..++
T Consensus 5 e~~I~~L~s~Gf~~~~~~r 23 (46)
T 2oo9_A 5 SSEIENLMSQGYSYQDIQK 23 (46)
T ss_dssp HHHHHHHHHTTBCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHH
Confidence 4789999999999987654
No 37
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=20.21 E-value=1.8e+02 Score=28.62 Aligned_cols=84 Identities=11% Similarity=-0.097 Sum_probs=57.9
Q ss_pred CCCceEEEeccchhHHHHHHHhhCCCCCCCHHHHHHHHhhhcCCCccchHHHHHhhcc-c-cchHHHHHHH-cCCCcc--
Q 023614 159 NKDVTWVTFHSAYDFGYLVKCLTQRVLPEKLSEFVTRVGVFFGEKVYDVKHLIRFCTC-L-YGGLDRVCKA-LGVERV-- 233 (280)
Q Consensus 159 ~~~v~Wvtfhg~yD~gyL~k~l~~~~LP~~~~~F~~~l~~~Fp~~iyD~K~la~~~~~-l-~~~L~~la~~-L~v~r~-- 233 (280)
+++++-|.++.-||+..|.+ .|-.+|. . +|||...+..+.. . ..+|..||++ |+++-.
T Consensus 79 d~~i~KV~hn~K~Dl~vL~~--~Gi~l~g--------------~-~fDTmLAAYLL~p~~~~~~L~~La~~yLg~~l~~~ 141 (592)
T 3pv8_A 79 DETKKKSMFDSKRAAVALKW--KGIELCG--------------V-SFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPD 141 (592)
T ss_dssp CTTSEEEESSHHHHHHHHHH--TTCCCCC--------------E-EEEHHHHHHHHCGGGCCCSHHHHHGGGTCCSSCCH
T ss_pred CCCCeEEEechHHHHHHHHH--cCCCCCC--------------c-cchHHHHHHHcCCCCCCCCHHHHHHHHcCCCCchH
Confidence 56777788777888887765 2544442 3 8899988887743 3 4689999987 454320
Q ss_pred ---CCC------------ccchhhhHHHHHHHHHHHHHhhC
Q 023614 234 ---VGK------------SHQAGSDSLLTLHAFLKIKDKHF 259 (280)
Q Consensus 234 ---~g~------------~hqAGsDs~lT~~~F~~l~~~~~ 259 (280)
.|+ .+.|..|+..|.+.+-+|....-
T Consensus 142 ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~ 182 (592)
T 3pv8_A 142 EAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELR 182 (592)
T ss_dssp HHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 23478899999999988887654
Done!