Query 023615
Match_columns 280
No_of_seqs 217 out of 1982
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 09:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.7 6.9E-18 2.3E-22 155.5 4.2 165 67-237 97-341 (367)
2 3hkx_A Amidase; alpha-beta-BET 12.0 1.4E+02 0.0048 25.4 3.1 19 156-174 46-65 (283)
3 3ivz_A Nitrilase; alpha-beta s 11.0 1.5E+02 0.0051 24.7 2.9 19 156-174 27-46 (262)
4 2ahq_A Sigma-54, RNA polymeras 10.9 4.1E+02 0.014 18.2 4.8 46 220-269 16-61 (76)
5 2w1v_A Nitrilase-2, nitrilase 10.9 1.5E+02 0.0052 24.9 3.0 19 156-174 28-47 (276)
6 1uf5_A N-carbamyl-D-amino acid 10.1 1.7E+02 0.0057 24.9 3.0 19 156-174 31-50 (303)
7 3p8k_A Hydrolase, carbon-nitro 8.4 1.6E+02 0.0054 25.0 2.0 19 156-174 46-65 (281)
8 2k8f_B Cellular tumor antigen 8.3 92 0.0031 18.4 0.3 13 15-27 23-35 (39)
9 2e11_A Hydrolase; dimethylarse 7.9 1.4E+02 0.0046 25.0 1.4 14 161-174 33-47 (266)
10 2kwl_A ACP, acyl carrier prote 7.9 4.7E+02 0.016 17.1 4.1 32 219-250 4-35 (84)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.69 E-value=6.9e-18 Score=155.51 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=106.1
Q ss_pred hHHHHHHHHHHHhceEEEEcC-------CCCCCCCCCCCcEEEEeCCCCCChHHHHHHHhCC-------ceEEEEe----
Q 023615 67 LPERLAWYNYKLLGIKVVVKG-------TPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGR-------KISCVTY---- 128 (280)
Q Consensus 67 l~~~~~~~~l~~~Gv~v~v~G-------~~~~p~~~~~~~~IivaNH~S~lD~l~l~~~~~~-------~~~~v~~---- 128 (280)
+...|.+.+++..|.+ |.| .++++. ++++|++|||||.+|++++..++++ ++.||+.
T Consensus 97 ~~~~~ir~li~~~~s~--V~G~e~~~~~~E~l~~---~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~ 171 (367)
T 1iuq_A 97 FGQNYIRPLIDFGNSF--VGNLSLFKDIEEKLQQ---GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVL 171 (367)
T ss_dssp HHHHHHGGGBCGGGCE--EECHHHHHHHHHHHHT---TCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHH
T ss_pred HHHHHHHHHHhhcCCE--eecchhhhhHHhhccC---CCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhh
Confidence 4445666666666666 778 667764 6899999999999999999999975 7999982
Q ss_pred ccchH---HHHHhhCCcEEe----e------CCCh-hhHH---HHHHHHhc-C-CEEEEeCccccCC----Ccc--ccch
Q 023615 129 SISKF---TEIISPIKAVAL----S------RERE-KDAA---HIKQLLEE-G-DLVICPEGTTCRE----PFL--LRFS 183 (280)
Q Consensus 129 ~~~~~---~~~l~~~g~i~i----~------R~~~-~~~~---~i~~~l~~-g-~lvIFPEGTrs~~----~~l--~~Fk 183 (280)
..|.. +.+ +.+++|+. + |++. .+.+ .+.+.|++ | .++|||||||+++ +.+ .+|+
T Consensus 172 ~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~r~n~ksl~~~~~~Lk~GG~sI~IFPEGTRsR~~~~~g~l~~~~Fk 250 (367)
T 1iuq_A 172 ADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFD 250 (367)
T ss_dssp HCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHHHHHHHHHHHHHHHHHHCCCEEEECTTCSCCCBCTTTCCBCCCCCC
T ss_pred cCccccchhhh-hheeeEEecccCCCcchhhhhhhHHHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCCCCcccccccc
Confidence 23333 222 33456664 3 3322 1223 34467888 4 5999999999995 444 4487
Q ss_pred HHH-------hh-cCCc--EEEEEEecCCCCcc--------CC--------C----CCCccccC---C----CCCHHHHH
Q 023615 184 ALF-------AE-LTDR--IVPVAINTKQSVFH--------GT--------T----LPPELTVK---G----GKSAIEVA 226 (280)
Q Consensus 184 ~~~-------~~-~~~p--IvPV~I~~~~~~~~--------g~--------~----Lp~~~~~~---~----~~~~~~la 226 (280)
.+. +. .++| |+||+|.+...+.. |. . .|++.+.+ . .+..++++
T Consensus 251 ~gs~~~~~~LA~ksg~P~hIvPvaI~t~~imppp~~ve~~~g~~r~i~~~~V~v~ig~pI~~~~l~~~~e~~~e~~~~l~ 330 (367)
T 1iuq_A 251 ASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIGEKRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYS 330 (367)
T ss_dssp HHHHHHHHHHHHTSSSCEEEEEEEEECGGGSCCC----------CCCCCBCCEEEECCCCCHHHHHHTSSSHHHHHHHHH
T ss_pred chhhhHHHHHHHHcCCCceEEEEEEEeccccCCcccccccccccceeecccEEEEECCccchhhccccccchHHHHHHHH
Confidence 422 22 3589 99999995432211 11 1 34443211 1 12245799
Q ss_pred HHHHHHHHhhh
Q 023615 227 NYIQRVLAGTL 237 (280)
Q Consensus 227 ~~v~~~Ia~~l 237 (280)
+.+++.|++.+
T Consensus 331 e~v~~~I~~~y 341 (367)
T 1iuq_A 331 KALFDSVAMQY 341 (367)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 2
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=11.97 E-value=1.4e+02 Score=25.41 Aligned_cols=19 Identities=26% Similarity=0.363 Sum_probs=14.6
Q ss_pred HHHHHhcC-CEEEEeCcccc
Q 023615 156 IKQLLEEG-DLVICPEGTTC 174 (280)
Q Consensus 156 i~~~l~~g-~lvIFPEGTrs 174 (280)
++++.++| ++++|||-..+
T Consensus 46 i~~A~~~gadlvvfPE~~l~ 65 (283)
T 3hkx_A 46 AARASEQGAQLLLTPELFGF 65 (283)
T ss_dssp HHHHHHTTCSEEECCTTGGG
T ss_pred HHHHHHCCCCEEEcCCCccc
Confidence 44566678 69999998766
No 3
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=11.04 E-value=1.5e+02 Score=24.72 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=14.1
Q ss_pred HHHHHhcC-CEEEEeCcccc
Q 023615 156 IKQLLEEG-DLVICPEGTTC 174 (280)
Q Consensus 156 i~~~l~~g-~lvIFPEGTrs 174 (280)
++++.++| ++++|||-..+
T Consensus 27 i~~A~~~gadlvvfPE~~~~ 46 (262)
T 3ivz_A 27 IKEASKQGAQLVVLPELFDT 46 (262)
T ss_dssp HHHHHHTTCSEEECCTTTTT
T ss_pred HHHHHHCCCCEEEeCCCccc
Confidence 44556677 69999997665
No 4
>2ahq_A Sigma-54, RNA polymerase sigma factor RPON; sigma-54,sigma factors, solution structure, transcription; NMR {Aquifex aeolicus} PDB: 2o8k_A 2o9l_A
Probab=10.95 E-value=4.1e+02 Score=18.22 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhhhCCCCCCCCHHHHHHHhhcCCCCCCCcchhhhH
Q 023615 220 KSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPSKKEKEKE 269 (280)
Q Consensus 220 ~~~~~la~~v~~~Ia~~l~~~~~~~t~~dk~~~l~~~~~~~~~~~~~~~~ 269 (280)
.+.+.+-+.+++.|++. .+..+++.+.....|... .....++++-+
T Consensus 16 ~S~~~Ik~~Ik~lI~~E--d~~kPlSD~~I~~~L~~~--Gi~IaRRTVaK 61 (76)
T 2ahq_A 16 LTQGELMKLIKEIVENE--DKRKPYSDQEIANILKEK--GFKVARRTVAK 61 (76)
T ss_dssp CCHHHHHHHHHHHGGGC--CSSSCCCHHHHHHHHTTT--SSCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHc--CCCccHHHHHH
Confidence 44544444444444331 235678889888999765 66777777643
No 5
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=10.94 E-value=1.5e+02 Score=24.86 Aligned_cols=19 Identities=21% Similarity=0.480 Sum_probs=13.9
Q ss_pred HHHHHhcC-CEEEEeCcccc
Q 023615 156 IKQLLEEG-DLVICPEGTTC 174 (280)
Q Consensus 156 i~~~l~~g-~lvIFPEGTrs 174 (280)
++++.++| ++++|||...+
T Consensus 28 i~~a~~~gadlvv~PE~~~~ 47 (276)
T 2w1v_A 28 VREAAKQGANIVSLPECFNS 47 (276)
T ss_dssp HHHHHHTTCSEEECCTTTTS
T ss_pred HHHHHHCCCCEEEcCCCccc
Confidence 34555677 69999998764
No 6
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=10.13 E-value=1.7e+02 Score=24.87 Aligned_cols=19 Identities=16% Similarity=0.429 Sum_probs=13.8
Q ss_pred HHHHHhcC-CEEEEeCcccc
Q 023615 156 IKQLLEEG-DLVICPEGTTC 174 (280)
Q Consensus 156 i~~~l~~g-~lvIFPEGTrs 174 (280)
++++.++| ++++|||...+
T Consensus 31 i~~a~~~gadlvv~PE~~~~ 50 (303)
T 1uf5_A 31 LTKAASRGANFIVFPELALT 50 (303)
T ss_dssp HHHHHHTTCSEEECCTTTTS
T ss_pred HHHHHhcCCCEEEecccccc
Confidence 34555677 69999997665
No 7
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=8.38 E-value=1.6e+02 Score=25.03 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=13.6
Q ss_pred HHHHHhcC-CEEEEeCcccc
Q 023615 156 IKQLLEEG-DLVICPEGTTC 174 (280)
Q Consensus 156 i~~~l~~g-~lvIFPEGTrs 174 (280)
++++.++| ++++|||-..+
T Consensus 46 i~~A~~~gadlvvfPE~~l~ 65 (281)
T 3p8k_A 46 FEKNMNAEVDVVVLPEMWNN 65 (281)
T ss_dssp HHHHCCTTCCEEECCSSTTT
T ss_pred HHHHHhCCCcEEEcCCCccC
Confidence 34455567 69999998765
No 8
>2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens}
Probab=8.32 E-value=92 Score=18.45 Aligned_cols=13 Identities=46% Similarity=0.817 Sum_probs=10.5
Q ss_pred CCCCCCCCCCCCe
Q 023615 15 CEPLPRNKLLSPV 27 (280)
Q Consensus 15 ~~~~~~~~~~~~~ 27 (280)
|++||.+.-.+|.
T Consensus 23 W~LLP~~~ilspl 35 (39)
T 2k8f_B 23 WKLLPENNVLSPL 35 (39)
T ss_dssp HHTCSSSCCCCCC
T ss_pred HHhCCcccccccC
Confidence 8899998877764
No 9
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=7.89 E-value=1.4e+02 Score=24.99 Aligned_cols=14 Identities=50% Similarity=0.555 Sum_probs=11.1
Q ss_pred hcC-CEEEEeCcccc
Q 023615 161 EEG-DLVICPEGTTC 174 (280)
Q Consensus 161 ~~g-~lvIFPEGTrs 174 (280)
++| ++++|||...+
T Consensus 33 ~~gadlvv~PE~~~~ 47 (266)
T 2e11_A 33 AGQSDLVILPETFTS 47 (266)
T ss_dssp TTTCSEEECCTTTTT
T ss_pred cCCCCEEECCCCccc
Confidence 567 69999997665
No 10
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=7.87 E-value=4.7e+02 Score=17.11 Aligned_cols=32 Identities=9% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHhhhCCCCCCCCHHHHH
Q 023615 219 GKSAIEVANYIQRVLAGTLGFECTNLTRKDKY 250 (280)
Q Consensus 219 ~~~~~~la~~v~~~Ia~~l~~~~~~~t~~dk~ 250 (280)
..+.+++.+++++.+++.++.+...++..+.+
T Consensus 4 ~m~~~~i~~~l~~~i~~~l~~~~~~i~~~~~l 35 (84)
T 2kwl_A 4 SMDNDEIFSKVRSIISEQLDKKEDEITTDSRF 35 (84)
T ss_dssp CSTHHHHHHHHHHHHHHHHCCCGGGCCTTTHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcccCCCCCch
Confidence 35678899999999999998766555544443
Done!