RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 023615
(280 letters)
>gnl|CDD|215118 PLN02177, PLN02177, glycerol-3-phosphate acyltransferase.
Length = 497
Score = 522 bits (1347), Expect = 0.0
Identities = 240/294 (81%), Positives = 256/294 (87%), Gaps = 27/294 (9%)
Query: 1 MAVCKEGYMVPKMKCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMPIGIILSILR 60
M++CKEGYMVP+ KCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMPIG ILS+LR
Sbjct: 204 MSICKEGYMVPRTKCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMPIGFILSLLR 263
Query: 61 VYTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALG 120
VY NIPLPER+A YNYKLLGI+++VKG PPP PK GQ GVLF+CNHRTVLDPVVTAVALG
Sbjct: 264 VYLNIPLPERIARYNYKLLGIRLIVKGNPPPPPKKGQPGVLFVCNHRTVLDPVVTAVALG 323
Query: 121 RKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLL 180
RKISCVTYSISKF+E+ISPIKAVALSREREKDAA+IK+LLEEGDLVICPEGTTCREPFLL
Sbjct: 324 RKISCVTYSISKFSELISPIKAVALSREREKDAANIKRLLEEGDLVICPEGTTCREPFLL 383
Query: 181 RFSALFAELTDRIVPVAINTKQSVFHGTT---------------------------LPPE 213
RFSALFAELTDRIVPVAINTKQS+FHGTT LP E
Sbjct: 384 RFSALFAELTDRIVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEITFLNQLPKE 443
Query: 214 LTVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPSKKEKE 267
LT KGGKS IEVANYIQRVLAGTLGFECTNLTRKDKY+ILAGTDGRVPSKKEK+
Sbjct: 444 LTCKGGKSPIEVANYIQRVLAGTLGFECTNLTRKDKYAILAGTDGRVPSKKEKK 497
>gnl|CDD|178115 PLN02499, PLN02499, glycerol-3-phosphate acyltransferase.
Length = 498
Score = 335 bits (861), Expect = e-113
Identities = 150/273 (54%), Positives = 182/273 (66%), Gaps = 27/273 (9%)
Query: 26 PVIFHEGRLVQRPTPLVALLTFLWMPIGIILSILRVYTNIPLPERLAWYNYKLLGIKVVV 85
PVIFH+GRLV+RPTP ALL LW+P+GIIL+++R++ I LP Y ++ G KV+V
Sbjct: 216 PVIFHDGRLVKRPTPATALLILLWIPLGIILAVIRIFVGIMLPMWAIPYVSRIFGGKVIV 275
Query: 86 KGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVAL 145
KG PPP G SGVLF+C HRT++DPVV + LGR I VTYSIS+ +EI+SPI V L
Sbjct: 276 KGKPPPPASGGNSGVLFVCTHRTLMDPVVLSTVLGRSIPAVTYSISRLSEILSPIPTVRL 335
Query: 146 SREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSVF 205
+R R+ DA IK+ L GDLV+CPEGTTCREPFLLRFSALFAELTDRIVPVA+N + F
Sbjct: 336 TRIRDVDAEKIKRELARGDLVVCPEGTTCREPFLLRFSALFAELTDRIVPVAMNYRVGFF 395
Query: 206 HGTT---------------------------LPPELTVKGGKSAIEVANYIQRVLAGTLG 238
H TT LP E T GKS +VANY+QR+LA TLG
Sbjct: 396 HATTARGWKGLDPIFFFMNPRPVYEVTFLNQLPVEATCSSGKSPHDVANYVQRILAATLG 455
Query: 239 FECTNLTRKDKYSILAGTDGRVPSKKEKEKEKE 271
FECTN TRKDKY +LAG DG V ++ K+
Sbjct: 456 FECTNFTRKDKYRVLAGNDGTVSYLSFLDQLKK 488
>gnl|CDD|215320 PLN02588, PLN02588, glycerol-3-phosphate acyltransferase.
Length = 525
Score = 233 bits (595), Expect = 2e-73
Identities = 126/297 (42%), Positives = 173/297 (58%), Gaps = 37/297 (12%)
Query: 3 VCKEGYMV---PKMKCEPLPRNKLLSPVIFHEGRLVQRPTPLVALLTFLWMPIGIILSIL 59
C+E Y V K + LPR++ P+IFH+GRL +PTPL L+ F+W P L+
Sbjct: 230 FCQEIYFVRNSDKKSWQTLPRDQYPKPLIFHDGRLAIKPTPLNTLVLFMWAPFAAALAAA 289
Query: 60 RVYTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVAL 119
R+ + LP LA GI + + + + G LF+CNHRT+LDP+ + AL
Sbjct: 290 RLVFGLNLPYSLANPFLAFSGIHLTLTVNDLISSDR-KKGCLFVCNHRTLLDPLYISYAL 348
Query: 120 GRK-ISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPF 178
+K I VTYS+S+ +E+++PIK V L+R+R KD +++LL +GDLV+CPEGTTCREP+
Sbjct: 349 RKKNIKAVTYSLSRLSELLAPIKTVRLTRDRVKDGQAMEKLLSQGDLVVCPEGTTCREPY 408
Query: 179 LLRFSALFAELTDRIVPVAINTKQSVFHGTTLP---------------PELTVK------ 217
LLRFS LF+E+ D IVPVAI++ + F+GTT P TV+
Sbjct: 409 LLRFSPLFSEVCDVIVPVAIDSHVTFFYGTTASGLKAFDPIFFLLNPFPSYTVQLLDPVS 468
Query: 218 -----------GGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPSK 263
GK EVAN++Q + LGFECTNLTR+DKY ILAG +G V K
Sbjct: 469 GSSSSTCQDPDNGKLKFEVANHVQHEIGNALGFECTNLTRRDKYLILAGNNGVVKKK 525
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 90.9 bits (226), Expect = 2e-22
Identities = 48/181 (26%), Positives = 80/181 (44%), Gaps = 28/181 (15%)
Query: 79 LGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKI-SCVTYSISKFT--- 134
+++ VKG PPP G VLF+ NH + D ++ + L R + V + +
Sbjct: 10 GFVRLEVKGPPPPP---GGGPVLFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLER 66
Query: 135 -EIISPIKAVALSREREKDAA----HIKQLLEEGD--LVICPEGTTCREP-FLLRFSALF 186
+ + A ++ R+ + AA ++ +LL + + I PEGT R L+F
Sbjct: 67 YPFFTRLGAFSVDRDSPRSAAKSLKYVARLLSKPGSVVWIFPEGTRTRRDKRPLQFKPGV 126
Query: 187 AELTDR----IVPVAINTKQSVFH---------GTTLPPELTVKGGKSAIEVANYIQRVL 233
A L ++ IVPVA+ +F G +P T G + A E+AN + R+L
Sbjct: 127 AHLAEKAGVPIVPVALRYTFELFEQFPEIFVRIGPPIPYAETALGEELAAELANRLTRLL 186
Query: 234 A 234
Sbjct: 187 D 187
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 67.4 bits (165), Expect = 3e-14
Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 16/116 (13%)
Query: 100 VLFICNHRTVLDPVVTAVALGRKISCVTYSISK-------FTEIISPIKAVALSREREKD 152
L + NH++ LDP+V + L RK+ V + K ++ + A+ + R +
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKLGRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNGRK 60
Query: 153 AAH----IKQLLEEGD-LVICPEGTTCREPFLLRF---SALFAELTD-RIVPVAIN 199
A +LL+EG+ L+I PEGT R LL F +A A IVPVAI
Sbjct: 61 ARAALREAVELLKEGEWLLIFPEGTRSRPGKLLPFKKGAARLALEAGVPIVPVAIR 116
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 66.9 bits (164), Expect = 2e-13
Identities = 50/156 (32%), Positives = 74/156 (47%), Gaps = 17/156 (10%)
Query: 76 YKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVT----YSIS 131
+LLG++V V+G PK V+ + NH++ LDP+V AL R I V + I
Sbjct: 5 LRLLGVRVRVEGLENLPPKGP---VIIVANHQSYLDPLVLGAALPRPIRFVAKKELFKIP 61
Query: 132 KFTEIISPIKAVALSREREKDAA----HIKQLLEEGD-LVICPEGTTCREPFLLRF---S 183
++ + A+ + R + A + L+EG+ +VI PEGT R+ LL F +
Sbjct: 62 FLGWLLRLLGAIPIDRGNGRSAREALREAIEALKEGESVVIFPEGTRSRDGELLPFKSGA 121
Query: 184 ALFAELTD-RIVPVAI-NTKQSVFHGTTLPPELTVK 217
A+ IVPVAI T S+ G LP V
Sbjct: 122 FRLAKEAGVPIVPVAISGTWGSLPKGKKLPRPGRVT 157
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 58.5 bits (142), Expect = 6e-11
Identities = 36/117 (30%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 99 GVLFICNHRTVLDPVVTAVALGRKISCVTYSISK--------FTEIISPIKAVALSRERE 150
+ + NH++ LDP++ ++ L K ++K ++ + + + R+
Sbjct: 15 PAIVVANHQSYLDPLLLSLLLP-KRGRPLVFVAKDELLNLPLLGWLMRLLGCIFIDRKNA 73
Query: 151 KDAA----HIKQLLEEGDLV-ICPEGTTCREPFLLRFSA----LFAELTDRIVPVAI 198
KDAA ++ +LL EG+LV I PEGT R LL F L E IVPVAI
Sbjct: 74 KDAANTLEYLVELLREGELVLIFPEGTRSRGGELLPFKKGAFRLAREAGVPIVPVAI 130
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 57.2 bits (138), Expect = 1e-09
Identities = 45/178 (25%), Positives = 73/178 (41%), Gaps = 24/178 (13%)
Query: 41 LVALLTFLWMPIGIILSILRVYTNIP--LPERLAWYNYKLLGIKVVVKGTPPPAPKNGQS 98
++ +L L ++++ R+ + L L G++V V+G PK
Sbjct: 8 ILVILFLLLPLPLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEVEG-LENLPK--GG 64
Query: 99 GVLFICNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISPI--------KAVALSRERE 150
L + NH++ LDP++ ++AL R+ ++K P+ A+ + RE
Sbjct: 65 PALVVANHQSFLDPLLLSLALPRRGP--VRFVAKKELFKVPLLGWLLRLLGAIPVDRENP 122
Query: 151 KDAA---HIKQLLEEGD-LVICPEGTT-----CREPFLLRFSALFAELTDRIVPVAIN 199
D + +L G LVI PEGT PF + L E IVPVAI
Sbjct: 123 DDETLRAAVARLKAGGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPIVPVAIV 180
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 42.6 bits (101), Expect = 6e-05
Identities = 34/119 (28%), Positives = 44/119 (36%), Gaps = 31/119 (26%)
Query: 76 YKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVT-------- 127
L G+KVVV G P PK L I NHR+ +D +V + R
Sbjct: 5 EWLSGVKVVVYGDEPKLPKER---ALIISNHRSEVDWLVLWMLADRFGRLGRLKIVLKDS 61
Query: 128 -------YSISKFTEIISPIKAVALSREREKDAAHIKQLLEE-------GDLVICPEGT 172
+ E I L R+ EKD IK+ L+ L+I PEGT
Sbjct: 62 LKYPPLGGWGWQLGEFI------FLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGT 114
>gnl|CDD|153254 cd07992, LPLAT_AAK14816-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis: Unknown
AAK14816-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are uncharacterized
glycerol-3-phosphate acyltransferases such as the
Plasmodium falciparum locus AAK14816 putative
acyltransferase, and similar proteins.
Length = 203
Score = 42.6 bits (101), Expect = 7e-05
Identities = 38/151 (25%), Positives = 58/151 (38%), Gaps = 41/151 (27%)
Query: 82 KVVVKGTPPPAPKNGQSGVLFICNHR-TVLDPVVTAVALGRKISCVTYS-------ISKF 133
++ V G PK+G V+F+ NH ++DP++ A L R + + + I
Sbjct: 15 RITVVG-RENVPKDG--PVIFLGNHPNALIDPLLLAATLRRPVRFLAKADLFKNPLIGWL 71
Query: 134 TEIISPIKAVALSREREKDAAHIK--------------QLLEEGD-LVICPEGTTCREPF 178
E A+ R KD A + L+ G + I PEG + P
Sbjct: 72 LESFG-----AIPVYRPKDLARGGIGKISNAAVFDAVGEALKAGGAIGIFPEGGSHDRPR 126
Query: 179 LLRFSALFAEL---------TD-RIVPVAIN 199
LL A A + D +IVPV +N
Sbjct: 127 LLPLKAGAARMALEALEAGQKDVKIVPVGLN 157
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 42.6 bits (101), Expect = 7e-05
Identities = 45/216 (20%), Positives = 73/216 (33%), Gaps = 55/216 (25%)
Query: 78 LLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSI-----SK 132
+ V G P P ++ + + NH + +DP++ S + SI
Sbjct: 8 FGFYVIKVHGKPDPP----EAPRIIVANHTSFIDPLIL-------FSDLFPSIVAKKELG 56
Query: 133 FTEIISPI----KAVALSREREKDAAH-IKQLLEEGD------LVICPEGTTCREPFLLR 181
I I + + R KD ++++ E ++I PEGTT L+
Sbjct: 57 KLPFIGTILRALGCIFVDRSEPKDRKKVVEEIKERATDPNWPPILIFPEGTTTNGKALIM 116
Query: 182 FSALFAELTDRIV-PVAI--NTKQSVFHGTT------------------------LPPEL 214
F A V PVAI K + LP
Sbjct: 117 FK-KGAFEPGVPVQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFLPVYT 175
Query: 215 TVKGGKSAIEVANYIQRVLAGTLGFECTNLTRKDKY 250
+ G+ E AN ++ ++A LG T+ T +DK
Sbjct: 176 PSEEGEDPKEFANRVRLIMANKLGLPATDWTGEDKR 211
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 40.8 bits (96), Expect = 1e-04
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 20/134 (14%)
Query: 80 GIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVT----YSISKFTE 135
G+KV V G P P +S VL + NH++ LDP+ + A I + I F
Sbjct: 1 GLKVEVVG-PENLPA--KSPVLVVANHQSNLDPLTLSAAFPPPIVFIAKKELKWIPFFGI 57
Query: 136 IISPIKAVALSREREKDAAHI----KQLLEEGDLV-ICPEGTTCREPFLLRF------SA 184
++ A+ + RE + A ++L++G + + PEGT R +L F A
Sbjct: 58 MLWLTGAIFIDRENIRAIATALKAAIEVLKQGRSIGVFPEGTRSRGRDILPFKKGAFHIA 117
Query: 185 LFAELTDRIVPVAI 198
+ A + I+PV +
Sbjct: 118 IKAGV--PILPVVL 129
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine
acyltransferase; Validated.
Length = 1146
Score = 38.0 bits (89), Expect = 0.005
Identities = 44/173 (25%), Positives = 67/173 (38%), Gaps = 42/173 (24%)
Query: 52 IGIILSILRVYTNIPLPERL----AW----YNYKLL--GIKVVVKGTPPPAPKNGQSGVL 101
I ++ I +YT + LP+ L Y+L G + + P G G L
Sbjct: 395 IALVTLIGTLYTLLLLPDSLLRFLLLLLMHTRYRLRVEGRENI--------PAKG--GAL 444
Query: 102 FICNHRTVLDPVVTAVALGRKISCVTYS----------ISKFTEIISPIKAVALSREREK 151
+ NH + +D + A R I V K +I PI S K
Sbjct: 445 LLGNHVSWIDWALLQAASPRPIRFVMERSIYEKWYLKWFFKLFGVI-PI-----SSGGSK 498
Query: 152 DAAH-IKQLLEEGDLV-ICPEGTTCREPFLLRFSALF---AELTD-RIVPVAI 198
++ I++ L++G++V I PEG R L F F + TD I+P I
Sbjct: 499 ESLEFIRKALDDGEVVCIFPEGAITRNGQLNEFKRGFELIVKGTDVPIIPFYI 551
>gnl|CDD|153247 cd07985, LPLAT_GPAT, Lysophospholipid Acyltransferases (LPLATs) of
Glycerophospholipid Biosynthesis: GPAT.
Lysophospholipid acyltransferase (LPLAT) superfamily
member: glycerol-3-phosphate 1-acyltransferase (GPAT,
PlsB). LPLATs are acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
This subgroup includes glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB).
Length = 235
Score = 33.2 bits (76), Expect = 0.11
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Query: 100 VLFICNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISPIKAVALSREREKDAAHIKQL 159
++++ R V DP+ ++GR + CV +S + P + ++QL
Sbjct: 54 MIYVAGDRVVSDPLCKPFSMGRNLLCV-HSKKHIDDP--PELKEEKMKANLATLKEMQQL 110
Query: 160 LEEGDLVI 167
L EG +I
Sbjct: 111 LNEGGQLI 118
>gnl|CDD|192395 pfam09821, ABC_transp, ABC nitrate/sulfonate/bicarbonate family
transporter, ATPase subunit. Members of this family are
found in various prokaryotic ABC transporters,
predominantly involved in nitrate, sulfonate and
bicarbonate translocation.
Length = 120
Score = 29.8 bits (68), Expect = 0.56
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 152 DAAHIKQL--LEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVA 197
+AA + LE GD+ + P G E + LFAE VP+A
Sbjct: 19 EAAELLGFAELEGGDIELTPLGRRFAEADIDERKELFAEQLLAHVPLA 66
>gnl|CDD|227096 COG4754, COG4754, Uncharacterized conserved protein [Function
unknown].
Length = 157
Score = 30.1 bits (68), Expect = 0.68
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 160 LEEGDLVICPEGTTCREPFLLRFSALFAELTDRIVPVAINTKQSVFHGTTLPPELTVKG 218
E GD+++ EG E + LF + I P A + + + L +
Sbjct: 60 AESGDIILTDEGKEYVESPIRERKELFRQKLKNIEPFATHLRLRLDDIEEAMEVLFEEE 118
>gnl|CDD|128752 smart00476, DNaseIc, deoxyribonuclease I. Deoxyribonuclease I
catalyzes the endonucleolytic cleavage of
double-stranded DNA. The enzyme is secreted outside the
cell and also involved in apoptosis in the nucleus.
Length = 276
Score = 30.5 bits (69), Expect = 0.74
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 164 DLVICPEGTTCREPFLLRFSALFAELTD-RIVPVAINTKQSV 204
D C REPF+++FS+ + + IVP+ + +V
Sbjct: 116 DGCECGNDVFSREPFVVKFSSPSTAVKEFVIVPLHTTPEAAV 157
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 30.1 bits (68), Expect = 1.3
Identities = 33/113 (29%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query: 77 KLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLDPV-VTAVALGRK--ISCVTY----S 129
K+ KVV G P + VL I NHRT +D + + +AL RK + + Y S
Sbjct: 75 KINKTKVVFSGDKVPPEER----VLLIANHRTEVDWMYLWDLAL-RKGCLGYIKYVLKSS 129
Query: 130 ISK---FTEIISPIKAVALSREREKDAAHIKQLLEEGD-------LVICPEGT 172
+ K F + + + R+ E D +I+Q+L L + PEGT
Sbjct: 130 LMKLPVFGWAFHIFEFIPVERKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGT 182
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 28.4 bits (64), Expect = 1.5
Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
Query: 263 KKEKEKEKERL---KIQEMED 280
K ++E+E +RL K +E+E+
Sbjct: 8 KAQREEELKRLKNLKREEIEE 28
>gnl|CDD|221786 pfam12814, Mcp5_PH, Meiotic cell cortex C-terminal pleckstrin
homology. The PH domain of these largely fungal
proteins is necessary for the cortical localisation of
the protein during meiosis, since the overall function
of the protein is to anchor dynein at the cell cortex
during the horsetail phase. During prophase I of fission
yeast, horsetail nuclear movement occurs, and this
starts when all the telomeres become bundled at the
spindle pole body - SPB. Subsequent to this, the nucleus
undergoes a dynamic oscillation, resulting in elongated
nuclear morphology. Horsetail nuclear movement is
thought to be predominantly due to the pulling of astral
microtubules that link the SPB to cortical
microtubule-attachment sites at the opposite end of the
cell; the pulling force is believed to be provided by
cytoplasmic dynein and dynactin.
Length = 121
Score = 28.8 bits (65), Expect = 1.5
Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 11/63 (17%)
Query: 90 PPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKISCVTYSISKFTEIISP---IKAVALS 146
G+S + I + +V D L R SI I++P IK A +
Sbjct: 53 SEKVSEGKSKSVPIESVTSVKDGNPLPKGLKRF----NKSI----VIVTPDRAIKFTAPT 104
Query: 147 RER 149
RER
Sbjct: 105 RER 107
>gnl|CDD|178307 PLN02705, PLN02705, beta-amylase.
Length = 681
Score = 29.5 bits (66), Expect = 2.2
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 242 TNLTRKDKYSILAGTDGRVPSKKEKEKEKERLKIQE 277
N S G G K+E+EKEKER K++E
Sbjct: 57 ENDVNNGNISSGGGGGGGGKGKREREKEKERTKLRE 92
>gnl|CDD|188519 TIGR04004, WcaM, colanic acid biosynthesis protein WcaM. This
protein of uncharacterized function is the final gene in
the conserved colanic acid biosynthesis cluster observed
in Enterobacteraceae.
Length = 464
Score = 29.1 bits (65), Expect = 2.8
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 131 SKFTEIISPIKAVALSREREKD-AAHIKQLLEEGDLVICPEGTTC 174
S+F + + V ++ D A KQ E V+ P G C
Sbjct: 25 SRFARALEGRQTVNIADYNPDDWIASFKQAFSEAQTVVVPAGLVC 69
>gnl|CDD|182253 PRK10123, wcaM, putative colanic acid biosynthesis protein;
Provisional.
Length = 464
Score = 29.0 bits (65), Expect = 3.1
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 131 SKFTEIISPIKAVALSREREKD-AAHIKQLLEEGDLVICPEGTTC 174
+ F + ++V ++ D A KQ EG V+ P G C
Sbjct: 23 TPFARALPARQSVNINDYNPHDWIASFKQAFSEGQTVVVPAGLVC 67
>gnl|CDD|132411 TIGR03368, cellulose_yhjU, cellulose synthase operon protein
YhjU. This protein was identified by the partial
phylogenetic profiling algorithm (PMID:16930487) as
part of the system for cellulose biosynthesis in
bacteria, and in fact is found in cellulose
biosynthesis gene regions. The protein was designated
YhjU in Salmonella enteritidis, where disruption of its
gene disrupts cellulose biosynthesis and biofilm
formation (PMID:11929533) [Cell envelope, Biosynthesis
and degradation of surface polysaccharides and
lipopolysaccharides].
Length = 518
Score = 28.8 bits (65), Expect = 3.4
Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 23 LLSPVIFHEGRLVQRPTPLVALLTFLWMPI-GIILSILRVYTNIPLPERLAWYNYKLLGI 81
+L +F G L P +A FL +PI L ILR + +P L + + L
Sbjct: 8 ILKFALFWAGYLNFHPLLNLAFAAFLLLPIPNRWLRILRQFIAVPAGIALLYRDSWL--- 64
Query: 82 KVVVKGTPPPA 92
PP
Sbjct: 65 -------PPLD 68
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 28.7 bits (65), Expect = 3.5
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 19/99 (19%)
Query: 41 LVALLTFLWMPIGIILSILRVYTNIPLPERL----------------AWYNYKLLGIKVV 84
L+ L T W IIL +L++ IP R L +
Sbjct: 17 LLILNTLFWSVPIIILGLLKLLLPIPAIRRACSRLLNFIAEAWISINNVILRLLPRTQWD 76
Query: 85 VKGTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKI 123
V+G + + L I NH++ +D +V R+I
Sbjct: 77 VEG---LEGLSKKGWYLVISNHQSWVDILVLQYVFNRRI 112
>gnl|CDD|220558 pfam10087, DUF2325, Uncharacterized protein conserved in bacteria
(DUF2325). Members of this family of hypothetical
bacterial proteins have no known function.
Length = 96
Score = 26.8 bits (60), Expect = 4.2
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 140 IKAVALSREREKDAAHIKQLLEEGDLVICP 169
+ + REK I LL++ DLVI
Sbjct: 24 GEFIVHDGGREKKKKKIPALLKKADLVIVF 53
>gnl|CDD|147835 pfam05899, Cupin_3, Protein of unknown function (DUF861). This
family consists of several proteins which seem to be
specific to plants and bacteria. The function of this
family is unknown.
Length = 74
Score = 26.1 bits (58), Expect = 5.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 160 LEEGDLVICPEGTTCREPFL 179
L GDLV+ P G T L
Sbjct: 48 LRAGDLVVFPAGFTGTWEVL 67
>gnl|CDD|236325 PRK08654, PRK08654, pyruvate carboxylase subunit A; Validated.
Length = 499
Score = 28.0 bits (63), Expect = 5.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 212 PELTVKGGKSAIEVANYIQRVLAGTLGF 239
PEL + G++A++ A I AGT+ F
Sbjct: 249 PELRERMGEAAVKAAKAINYENAGTVEF 276
>gnl|CDD|235432 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
Length = 954
Score = 28.2 bits (64), Expect = 6.6
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 14/42 (33%)
Query: 220 KSAIEVANYIQRVLAGTLGFECTNLTRKDKYSIL-AGTDGRV 260
+ AI ANYI + L KD Y +L G +GRV
Sbjct: 777 EVAILNANYIAKRL-------------KDHYPVLYTGANGRV 805
>gnl|CDD|185133 PRK15211, PRK15211, fimbrial chaperone protein PefD; Provisional.
Length = 229
Score = 27.5 bits (61), Expect = 6.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 14/56 (25%)
Query: 58 ILRV-YTNIPLP---ERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTV 109
I+R+ T+ LP E L W N + + PP PK + VL + + V
Sbjct: 86 IIRIMKTDSALPKDRESLFWLNVQEI----------PPKPKASEGNVLAVALNTQV 131
>gnl|CDD|197337 cd10282, DNase1, Deoxyribonuclease 1. Deoxyribonuclease 1 (DNase1,
EC 3.1.21.1), also known as DNase I, is a Ca2+,
Mg2+/Mn2+-dependent secretory endonuclease, first
isolated from bovine pancreas extracts. It cleaves DNA
preferentially at phosphodiester linkages next to a
pyrimidine nucleotide, producing 5'-phosphate terminated
polynucleotides with a free hydroxyl group on position
3'. It generally produces tetranucleotides. DNase1
substrates include single-stranded DNA, double-stranded
DNA, and chromatin. This enzyme may be responsible for
apoptotic DNA fragmentation. Other deoxyribonucleases in
this subfamily include human DNL1L (human DNase I
lysosomal-like, also known as DNASE1L1, Xib, and DNase X
), human DNASE1L2 (also known as DNAS1L2), and DNASE1L3
(also known as DNAS1L3, nhDNase, LS-DNase, DNase Y, and
DNase gamma) . DNASE1L3 is implicated in apoptotic DNA
fragmentation. DNase I is also a cytoskeletal protein
which binds actin. A recombinant form of human DNase1 is
used as a mucoactive therapy in patients with cystic
fibrosis; it hydrolyzes the extracellular DNA in sputum
and reduces its viscosity. Mutations in the gene
encoding DNase1 have been associated with Systemic Lupus
Erythematosus, a multifactorial autoimmune disease. This
subfamily belongs to the large EEP
(exonuclease/endonuclease/phosphatase) superfamily that
contains functionally diverse enzymes that share a
common catalytic mechanism of cleaving phosphodiester
bonds.
Length = 256
Score = 27.6 bits (62), Expect = 7.5
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 18/92 (19%)
Query: 175 REPFLLRFSALFAELTDRIVPVAINTKQSVFHGTTLPPELTVKGGKSAIEVANYIQR--- 231
REPF++RFS+ + D V V I+T P+ V + +V + +++
Sbjct: 108 REPFVVRFSSPSTAVKD-FVLVPIHTS----------PDDAVAEIDALYDVYDDVKQRWR 156
Query: 232 ----VLAGTLGFECTNLTRKDKYSILAGTDGR 259
+L G +C+ +T K SI TD R
Sbjct: 157 EDDVILLGDFNADCSYVTSKGWKSIRLRTDSR 188
>gnl|CDD|184352 PRK13829, rimM, 16S rRNA-processing protein RimM; Provisional.
Length = 162
Score = 27.0 bits (60), Expect = 8.0
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 59 LRVY---TNIPLPERLAWYNYKLLGIKVVVKGTP 89
LRVY ++P E ++Y ++L G+ V V G P
Sbjct: 72 LRVYADDADLPPLEEGSYYYHELRGLPVYVDGEP 105
>gnl|CDD|233974 TIGR02682, cas_csx11, CRISPR-associated protein, Csx11 family.
Members of this uncommon, sporadically distributed
protein family are large (>900 amino acids) and strictly
associated, so far, with CRISPR-associated (Cas) gene
clusters. Nearby Cas genes always include members of the
RAMP superfamily and the six-gene CRISPR-associated RAMP
module. Species in which it is found, so far, include
three archaea (Methanosarcina mazei, M. barkeri and
Methanobacterium thermoautotrophicum) and two bacteria
(Thermodesulfovibrio yellowstonii DSM 11347 and
Sulfurihydrogenibium azorense) [Mobile and
extrachromosomal element functions, Other].
Length = 918
Score = 27.5 bits (61), Expect = 10.0
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 245 TRKDKYSILAGTDGRVPSKKEKEKEKERLKIQEMED 280
+ IL G G + +K +E++K Q E
Sbjct: 92 DLQGLCQILYGASGSLNGGDKKGSPREKVKKQPKEY 127
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 14,601,950
Number of extensions: 1429069
Number of successful extensions: 1607
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1589
Number of HSP's successfully gapped: 45
Length of query: 280
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 184
Effective length of database: 6,679,618
Effective search space: 1229049712
Effective search space used: 1229049712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)