RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023615
(280 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 2e-05
Identities = 47/305 (15%), Positives = 84/305 (27%), Gaps = 125/305 (40%)
Query: 1 MAVCKEGYMVPKMKCEPLPR--NKLLSPVIFH--EGRLVQRPT----PLVALLTFLWMPI 52
A+ E + K+K E + + N+ + F +G L T P AL +
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA--TQFTQP--ALTL-----M 1739
Query: 53 GI-ILSILRVYTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSGVLFICNHRTVLD 111
L+ IP A G S
Sbjct: 1740 EKAAFEDLKSKGLIPADATFA-----------------------GHS------------- 1763
Query: 112 PVVTAVALGRKISCVTYS-ISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLV--IC 168
LG Y+ ++ +++S V + R G +
Sbjct: 1764 -------LGE------YAALASLADVMSIESLVEVVFYR-------------GMTMQVAV 1797
Query: 169 PEGTTCREPFLL------RFSALFAELTDRIVPVAINTKQSVFHGTTLPPELTVKGGKSA 222
P R + + R +A F++ + V + +
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL----------------- 1840
Query: 223 IEVANY----IQRVLAGTL-GFEC-TNLTRKDKYSILAGTDGRVPSKKEK-EKEKERLKI 275
+E+ NY Q V AG L + TN+ K +K + ++ L +
Sbjct: 1841 VEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK------------LQKIDIIELQKSLSL 1888
Query: 276 QEMED 280
+E+E
Sbjct: 1889 EEVEG 1893
Score = 34.3 bits (78), Expect = 0.046
Identities = 45/262 (17%), Positives = 76/262 (29%), Gaps = 104/262 (39%)
Query: 15 CEPLPRNKLLSPVIFHEG----RLVQRP--TPLVALLT--FLWMP-IGIILSILRVYTNI 65
L R L + +F +G ++ P TP L + P IG+I
Sbjct: 195 LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI---------- 244
Query: 66 PLPERLAWYNYKLLGIKVVVK--GTPPPAPKNGQSGVLFICNHRTVLDPVVTAVALGRKI 123
+LA Y V K G P ++ G +VTAVA I
Sbjct: 245 ----QLAHY-------VVTAKLLGFTPGELRSYLKGAT------GHSQGLVTAVA----I 283
Query: 124 SCVTYSISKFTEIISPIKAVALSREREKDAAHIKQLLEEGDLVICPEGTTCREPFLLRFS 183
+ S F + KA+ + I G C E + +
Sbjct: 284 AETD-SWESFFVSVR--KAITV-------LFFI--------------GVRCYEAY--PNT 317
Query: 184 ALFAELTDRIVPVAINTKQSVFHGTTLP-PELTVKGGKSAIEVANYIQRVLAGTLGFECT 242
+L + + S+ + +P P L++
Sbjct: 318 SLPPSIL----------EDSLENNEGVPSPMLSISN------------------------ 343
Query: 243 NLTRKDKYSILAGTDGRVPSKK 264
LT++ + T+ +P+ K
Sbjct: 344 -LTQEQVQDYVNKTNSHLPAGK 364
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.012
Identities = 28/167 (16%), Positives = 55/167 (32%), Gaps = 53/167 (31%)
Query: 136 IISPIKAVALSREREKDAAHIKQLLEE------GDLVICPEGTTCR-EPFL-LRFSALFA 187
++SPI + ++ + + ++ E D + + R +P+L LR AL
Sbjct: 94 LMSPI------KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR-QALL- 145
Query: 188 ELTD-RIVPVAINTKQSVFHGTTLPPELTVKG-GKS--AIEVAN--YIQRVLAG-----T 236
EL + V + G V G GK+ A++V +Q +
Sbjct: 146 ELRPAKNV---------LIDG--------VLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 237 LGFECT---------NLTRKDKYSILAGTDGRVPSKKEKEKEKERLK 274
L + L + + + +D K + L+
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 31.3 bits (71), Expect = 0.33
Identities = 27/100 (27%), Positives = 37/100 (37%), Gaps = 22/100 (22%)
Query: 19 PRNKLLSPVIFHEGRL--VQRPTPLVALLTF--------LWMPIG--IILS-------IL 59
P L SP I + RL + + F L +P+G I LS ++
Sbjct: 6 PAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVV 65
Query: 60 RVYTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSG 99
R YT I + + L IKV K T P P G+
Sbjct: 66 RPYTPISSDDDK---GFVDLVIKVYFKDTHPKFPAGGKMS 102
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease,
double strand DNA repair, protein-DNA CO hydrolase-DNA
complex; HET: DNA; 2.80A {Bacillus subtilis} PDB:
3u44_A*
Length = 1232
Score = 31.1 bits (70), Expect = 0.53
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 153 AAHIKQLLEEGDLVICPEGTTCREP------FLLR----FSALFAELTDRIVPVAINTKQ 202
A I++L+ V + T R LLR + EL + +PV N
Sbjct: 556 AKEIRKLISSPFKVYDGKKKTHRNIQYRDIVILLRSMPWAPQIMEELRAQGIPVYANLTS 615
Query: 203 SVF 205
F
Sbjct: 616 GYF 618
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four
helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1
PDB: 1k30_A
Length = 367
Score = 28.6 bits (63), Expect = 2.0
Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 45/160 (28%)
Query: 100 VLFICNHRTVLDPVVTAVALGRKIS-------------------CVTYSISKFTEIISPI 140
V+ I NH+T DP + ++ L + C +SI + +
Sbjct: 132 VVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSK 191
Query: 141 KAVA----LSREREKDA----AHIKQLLEEGDLVIC--PEGTTCR------EPFLLRFSA 184
K + L+ + K + LL G +I P G R E + F A
Sbjct: 192 KHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDA 251
Query: 185 ----LFAELTDR------IVPVAINTKQSVFHGTTLPPEL 214
L + P+A+ + + + E+
Sbjct: 252 SSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEI 291
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase;
1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2
PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Length = 708
Score = 27.2 bits (60), Expect = 6.7
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 62 YTNIPLPERLAWYNYKLLGIKVVVKGTPPPAPKNGQSG 99
P+P + L K++ + T P P + S
Sbjct: 666 VAGRPIPANYEQPEHDLEYYKMLARTTYVPEPWHPASS 703
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 26.9 bits (60), Expect = 8.1
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 98 SGVLFICNHRTVLDPVVTAVALGRKISCV 126
+ +L R VL + AVA ++ S
Sbjct: 123 ATILTHAYSRVVLRVLEAAVAAKKRFSVY 151
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Length = 533
Score = 27.1 bits (59), Expect = 8.6
Identities = 14/63 (22%), Positives = 22/63 (34%)
Query: 218 GGKSAIEVANYIQRVLAGTLGFECTNLTRKDKYSILAGTDGRVPSKKEKEKEKERLKIQE 277
G ++ VLA L Y+ L DG S ++ + KE K
Sbjct: 317 AGDDLKSGQTKLKSVLAQFLVDAGIKPVSIASYNHLGNNDGYNLSAPKQFRSKEISKSSV 376
Query: 278 MED 280
++D
Sbjct: 377 IDD 379
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,363,496
Number of extensions: 266747
Number of successful extensions: 605
Number of sequences better than 10.0: 1
Number of HSP's gapped: 604
Number of HSP's successfully gapped: 10
Length of query: 280
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,133,061
Effective search space: 777015468
Effective search space used: 777015468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.1 bits)