BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023616
(280 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EKJ|A Chain A, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|B Chain B, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|C Chain C, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|D Chain D, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|E Chain E, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|F Chain F, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|G Chain G, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
pdb|1EKJ|H Chain H, The X-Ray Crystallographic Structure Of Beta Carbonic
Anhydrase From The C3 Dicot Pisum Sativum
Length = 221
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 95/199 (47%), Gaps = 39/199 (19%)
Query: 99 EEMKQRFLSFKKNKYFEELEHFQNLAKAQSP----------KNGPSE------------- 135
E +K FL FKK KY + + LAK QSP + PS
Sbjct: 15 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 74
Query: 136 ----------------TNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSL 179
T AA+E+AV L+V NI+VIGHS CGGI+ L+ D
Sbjct: 75 NVANLVPPYDQAKYAGTGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPFDGTYSTDF 134
Query: 180 TENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFI 239
E WV AK + KA F + C HCEKE+++ S+ NLLTYP++ E + + L +
Sbjct: 135 IEEWVKIGLPAKAKVKAQHGDAPFAELCTHCEKEAVNASLGNLLTYPFVREGLVNKTLAL 194
Query: 240 HGGYYDLLNCTFEKWTLDY 258
GGYYD + +FE W L++
Sbjct: 195 KGGYYDFVKGSFELWGLEF 213
>pdb|3E2X|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E2X|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E31|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant V47a
pdb|3E3F|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
pdb|3E3F|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant V47a With
100 Mm Bicarbonate
Length = 229
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ L++++I++ GH++CGGI A M D L NW+++ + F+
Sbjct: 79 SVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLGLINNWLLHIRDIWFKHGHL 133
Query: 198 TAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDL 246
LS +++ K +++ + NL + W ER +K L +HG YD+
Sbjct: 134 LGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQK--LSLHGWVYDV 183
>pdb|2A8C|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8C|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase
pdb|2A8D|A Chain A, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|B Chain B, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|C Chain C, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|D Chain D, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|E Chain E, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
pdb|2A8D|F Chain F, Haemophilus Influenzae Beta-Carbonic Anhydrase Complexed
With Bicarbonate
Length = 229
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ L++++I++ GH++CGGI A M D L NW+++ + F+
Sbjct: 79 SVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLGLINNWLLHIRDIWFKHGHL 133
Query: 198 TAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDL 246
LS +++ K +++ + NL + W ER +K L +HG YD+
Sbjct: 134 LGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQK--LSLHGWVYDV 183
>pdb|3E24|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
pdb|3E24|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant W39f
Length = 229
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ L++++I++ GH++CGGI A M D L NW+++ + F+
Sbjct: 79 SVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLGLINNWLLHIRDIWFKHGHL 133
Query: 198 TAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDL 246
LS +++ K +++ + NL + W ER +K L +HG YD+
Sbjct: 134 LGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQK--LSLHGWVYDV 183
>pdb|3E1V|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1V|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant D44n
pdb|3E1W|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
pdb|3E1W|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant D44n In 100
Mm Sodium Bicarbonate
Length = 229
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ L++++I++ GH++CGGI A M D L NW+++ + F+
Sbjct: 79 SVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLGLINNWLLHIRDIWFKHGHL 133
Query: 198 TAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDL 246
LS +++ K +++ + NL + W ER +K L +HG YD+
Sbjct: 134 LGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQK--LSLHGWVYDV 183
>pdb|3E3G|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3G|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a
pdb|3E3I|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|G Chain G, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|H Chain H, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|I Chain I, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|J Chain J, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|K Chain K, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
pdb|3E3I|L Chain L, H. Influenzae Beta-Carbonic Anhydrase, Variant G41a With
100 Mm Bicarbonate
Length = 229
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ L++++I++ GH++CGGI A M D L NW+++ + F+
Sbjct: 79 SVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLGLINNWLLHIRDIWFKHGHL 133
Query: 198 TAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDL 246
LS +++ K +++ + NL + W ER +K L +HG YD+
Sbjct: 134 LGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQK--LSLHGWVYDV 183
>pdb|3MF3|A Chain A, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|B Chain B, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|C Chain C, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|D Chain D, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|E Chain E, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
pdb|3MF3|F Chain F, Cobalt(Ii)-Substituted Haemophilus Influenzae B-Carbonic
Anhydrase
Length = 221
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ L++++I++ GH++CGGI A M D L NW+++ + F+
Sbjct: 79 SVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLGLINNWLLHIRDIWFKHGHL 133
Query: 198 TAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDL 246
LS +++ K +++ + NL + W ER +K L +HG YD+
Sbjct: 134 LGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQK--LSLHGWVYDV 183
>pdb|3E28|A Chain A, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|B Chain B, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|C Chain C, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|D Chain D, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|E Chain E, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E28|F Chain F, H. Influenzae Beta-carbonic Anhydrase, Variant Y181f
pdb|3E2A|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2A|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
100 Mm Bicarbonate
pdb|3E2W|A Chain A, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|B Chain B, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|C Chain C, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|D Chain D, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|E Chain E, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
pdb|3E2W|F Chain F, H. Influenzae Beta-Carbonic Anhydrase, Variant Y181f With
1m Bicarbonate
Length = 229
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 60/114 (52%), Gaps = 14/114 (12%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ L++++I++ GH++CGGI A M D L NW+++ + F+
Sbjct: 79 SVVQYAVDVLKIEHIIICGHTNCGGIHAAM-----ADKDLGLINNWLLHIRDIWFKHGHL 133
Query: 198 TAHLSFDQQCRHCEKESISRSILNL-----LTYPWIEERVRKELLFIHGGYYDL 246
LS +++ K +++ + NL + W ER +K L +HG +D+
Sbjct: 134 LGKLSPEKRADMLTKINVAEQVYNLGRTSIVKSAW--ERGQK--LSLHGWVFDV 183
>pdb|3QY1|A Chain A, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
pdb|3QY1|B Chain B, 1.54a Resolution Crystal Structure Of A Beta-Carbonic
Anhydrase From Salmonella Enterica Subsp. Enterica
Serovar Typhimurium Str. Lt2
Length = 223
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ +++AV+ LEV++I++ GHS CGGI+A + + L NW+++ + + +
Sbjct: 82 SVVQYAVDVLEVEHIIICGHSGCGGIKAAVE-----NPELGLINNWLLHIRDIWLKHSSL 136
Query: 198 TAHLSFDQQCRHCEKESISRSILNL 222
+ +Q+ + ++ + NL
Sbjct: 137 LGKMPEEQRLDALYELNVMEQVYNL 161
>pdb|3UCJ|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCJ|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Acetazolamide
pdb|3UCK|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCK|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Phosphate
pdb|3UCM|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCM|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With
Thiocyanate
pdb|3UCN|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCN|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Azide
pdb|3UCO|A Chain A, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
pdb|3UCO|B Chain B, Coccomyxa Beta-Carbonic Anhydrase In Complex With Iodide
Length = 227
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ LE+ V+ L++++ILV GH +CG +A + +T W+ + + + + A
Sbjct: 84 SCLEYTVDHLKIKHILVCGHYNCGACKAGLVWHPKT---AGVTNLWISDVREVRDKNAAK 140
Query: 198 TAHLSFDQQCRHCEKESISRSILNLLTYPWIEER-VRKELLFIHGGYYDLLNCTFEKWTL 256
LS D + ++ + N+ P ++ R + L +HG Y ++
Sbjct: 141 LHGLSADDAWDKMVELNVEAQVFNVCASPIVQAAWARGQPLSVHGIVYTPGTGLVKELIK 200
Query: 257 DYKGRKVDEEEVGRHSIKDHSFWS 280
G + D + R +K H F+S
Sbjct: 201 PITGME-DAGALLRADLKQHCFFS 223
>pdb|1DDZ|A Chain A, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
pdb|1DDZ|B Chain B, X-Ray Structure Of A Beta-Carbonic Anhydrase From The Red
Alga, Porphyridium Purpureum R-1
Length = 496
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWV 184
+ L++AV L+V++ILV GH CGG +A + DSR L +NW+
Sbjct: 111 SVLQYAVQYLKVKHILVCGHYGCGGAKAALG-----DSRLGLIDNWL 152
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAY 197
+ L++AV L+V+ ++V GH CGG A + DSR L +NW+ + + + +A
Sbjct: 365 SVLQYAVQYLKVKRVVVCGHYACGGCAAALG-----DSRLGLIDNWLRHIRDVRRHNQAE 419
Query: 198 TAHLSFDQQCRHCEKESISRSI-LNLL 223
+ ++ K+S++R I +N+L
Sbjct: 420 LSRITD-------PKDSLNRLIEINVL 439
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQ 170
A LEFA+ L+V +++ GH+DCGGI+ + Q
Sbjct: 88 ATLEFAIICLKVNKVIICGHTDCGGIKTCLTNQ 120
>pdb|1I6O|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1I6O|B Chain B, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
Length = 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFR 193
+ +++AV+ LEV++I++ GH CGG+QA + + L NW+++ + F+
Sbjct: 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVE-----NPELGLINNWLLHIRDIWFK 129
>pdb|1I6P|A Chain A, Crystal Structure Of E. Coli Beta Carbonic Anhydrase
(Ecca)
pdb|1T75|A Chain A, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|B Chain B, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|D Chain D, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|1T75|E Chain E, Crystal Structure Of Escherichia Coli Beta Carbonic
Anhydrase
pdb|2ESF|A Chain A, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
pdb|2ESF|B Chain B, Identification Of A Novel Non-catalytic Bicarbonate
Binding Site In Eubacterial Beta-carbonic Anhydrase
Length = 220
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 138 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFR 193
+ +++AV+ LEV++I++ GH CGG+QA + + L NW+++ + F+
Sbjct: 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVE-----NPELGLINNWLLHIRDIWFK 129
>pdb|2W3Q|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 243
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 121 QNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLT 180
+N+A P++ S+ A L +A+ + V +++V+GH+ CGG A D
Sbjct: 94 RNVANQFKPEDDSSQ--ALLNYAIMNVGVTHVMVVGHTGCGGCIAAF------DQPLPTE 145
Query: 181 ENWVVNAKVAKFRTKAYTAH-LSFDQQCRHCEKESISRSILNLLTYPWIE---ERVRK-- 234
EN V H L KE++ ++ N++ P I+ E+ RK
Sbjct: 146 ENPGGTPLVRYLEPIIRLKHSLPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQARKGE 205
Query: 235 -ELLFIHGGYYDL 246
+F+HG YDL
Sbjct: 206 FREVFVHGWLYDL 218
>pdb|2W3N|A Chain A, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|B Chain B, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
pdb|2W3N|C Chain C, Structure And Inhibition Of The Co2-Sensing Carbonic
Anhydrase Can2 From The Pathogenic Fungus Cryptococcus
Neoformans
Length = 239
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 15/133 (11%)
Query: 121 QNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLT 180
+N+A P++ S+ A L +A+ + V +++V+GH+ CGG A D
Sbjct: 90 RNVANQFKPEDDSSQ--ALLNYAIMNVGVTHVMVVGHTGCGGCIAAF------DQPLPTE 141
Query: 181 ENWVVNAKVAKFRTKAYTAH-LSFDQQCRHCEKESISRSILNLLTYPWIE---ERVRK-- 234
EN V H L KE++ ++ N++ P I+ E+ RK
Sbjct: 142 ENPGGTPLVRYLEPIIRLKHSLPEGSDVNDLIKENVKMAVKNVVNSPTIQGAWEQARKGE 201
Query: 235 -ELLFIHGGYYDL 246
+F+HG YDL
Sbjct: 202 FREVFVHGWLYDL 214
>pdb|1YM3|A Chain A, Crystal Structure Of Carbonic Anhydrase Rv3588c From
Mycobacterium Tuberculosis
Length = 215
Score = 33.9 bits (76), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 32/107 (29%)
Query: 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKN---GPSETNAA--------------- 139
+E +RF++ + + ++H LA Q P G +++ A
Sbjct: 21 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 80
Query: 140 --------------LEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD 172
+E+AV L V I+V+GH CG + A + +D
Sbjct: 81 RTAGHVIDSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAIND 127
>pdb|2A5V|A Chain A, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|B Chain B, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|C Chain C, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
pdb|2A5V|D Chain D, Crystal Structure Of M. Tuberculosis Beta Carbonic
Anhydrase, Rv3588c, Tetrameric Form
Length = 213
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 32/107 (29%)
Query: 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKN---GPSETNAA--------------- 139
+E +RF++ + + ++H LA Q P G +++ A
Sbjct: 19 LKEGNERFVAGRPQHPSQSVDHRAGLAAGQKPTAVIFGCADSRVAAEIIFDQGLGDMFVV 78
Query: 140 --------------LEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD 172
+E+AV L V I+V+GH CG + A + +D
Sbjct: 79 RTAGHVIDSAVLGSIEYAVTVLNVPLIVVLGHDSCGAVNAALAAIND 125
>pdb|3AMG|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
pdb|3AMG|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Cellobiose Substrate, Mutant Form
Length = 317
Score = 30.8 bits (68), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 99 EEMKQRFLSFKKN------KYFEELEHFQNLAKAQSPKNGPSETNAALEFA---VNTLEV 149
EE K+RFL+ K Y E L F + A P + N LE A + +++
Sbjct: 105 EEHKERFLALWKQIADRYKDYPETL--FFEILNAPHGNLTPEKWNELLEEALKVIRSIDK 162
Query: 150 QNILVIGHSDCGGIQALMRM 169
++ ++IG ++ GGI AL ++
Sbjct: 163 KHTIIIGTAEWGGISALEKL 182
>pdb|3AOF|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
pdb|3AOF|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a In Complex
With Mannotriose Substrate
Length = 317
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 99 EEMKQRFLSFKKN------KYFEELEHFQNLAKAQSPKNGPSETNAALEFA---VNTLEV 149
EE K+RFL+ K Y E L F + A P + N LE A + +++
Sbjct: 105 EEHKERFLALWKQIADRYKDYPETL--FFEILNAPHGNLTPEKWNELLEEALKVIRSIDK 162
Query: 150 QNILVIGHSDCGGIQALMRM 169
++ ++IG ++ GGI AL ++
Sbjct: 163 KHTIIIGTAEWGGISALEKL 182
>pdb|1G01|A Chain A, Alkaline Cellulase K Catalytic Domain
pdb|1G0C|A Chain A, Alkaline Cellulase K Catalytic Domain-Cellobiose Complex
Length = 364
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/146 (20%), Positives = 57/146 (39%), Gaps = 36/146 (24%)
Query: 92 CGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKN--GPSETN------AALEFA 143
G D+FEE+ + KN Y LA SP N GP TN A E+A
Sbjct: 124 SGAYDFFEEIADHYKDHPKNHYI-----IWELANEPSPNNNGGPGLTNDEKGWEAVKEYA 178
Query: 144 VNTLEV-----QNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYT 198
+E+ N++++G+ + R L+ + ++A+ + YT
Sbjct: 179 EPIVEMLREKGDNMILVGNPNW-------------SQRPDLSADNPIDAENIMYSVHFYT 225
Query: 199 -----AHLSFDQQCRHCEKESISRSI 219
+H+ + + E+ ++ ++
Sbjct: 226 GSHGASHIGYPEGTPSSERSNVMANV 251
>pdb|3AZR|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZR|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellobiose
pdb|3AZS|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZS|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Mannotriose
pdb|3AZT|A Chain A, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|B Chain B, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|C Chain C, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
pdb|3AZT|D Chain D, Diverse Substrates Recognition Mechanism Revealed By
Thermotoga Maritima Cel5a Structures In Complex With
Cellotetraose
Length = 317
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 99 EEMKQRFLSFKKN-----KYFEELEHFQNLAKAQSPKNGPSETNAALEFA---VNTLEVQ 150
EE K+RFL+ K K + E F+ L + P + N LE A + +++ +
Sbjct: 105 EEHKERFLALWKQIADRYKDYPETLFFEILNEPHGNLT-PEKWNELLEEALKVIRSIDKK 163
Query: 151 NILVIGHSDCGGIQALMRM 169
+ ++IG ++ GGI AL ++
Sbjct: 164 HTIIIGTAEWGGISALEKL 182
>pdb|3MMU|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|E Chain E, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|F Chain F, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|G Chain G, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMU|H Chain H, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|A Chain A, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|B Chain B, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|C Chain C, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3MMW|D Chain D, Crystal Structure Of Endoglucanase Cel5a From The
Hyperthermophilic Thermotoga Maritima
pdb|3AMC|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMC|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And DimerAU
pdb|3AMD|A Chain A, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|B Chain B, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|C Chain C, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
pdb|3AMD|D Chain D, Crystal Structures Of Thermotoga Maritima Cel5a, Apo Form
And TetramerAU
Length = 317
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 99 EEMKQRFLSFKKN-----KYFEELEHFQNLAKAQSPKNGPSETNAALEFA---VNTLEVQ 150
EE K+RFL+ K K + E F+ L + P + N LE A + +++ +
Sbjct: 105 EEHKERFLALWKQIADRYKDYPETLFFEILNEPHGNLT-PEKWNELLEEALKVIRSIDKK 163
Query: 151 NILVIGHSDCGGIQALMRM 169
+ ++IG ++ GGI AL ++
Sbjct: 164 HTIIIGTAEWGGISALEKL 182
>pdb|3MQT|A Chain A, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|B Chain B, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|C Chain C, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|D Chain D, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|E Chain E, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|F Chain F, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|G Chain G, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|H Chain H, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|I Chain I, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|J Chain J, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|K Chain K, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|L Chain L, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|M Chain M, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|N Chain N, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|O Chain O, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|P Chain P, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|Q Chain Q, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|R Chain R, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|S Chain S, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|T Chain T, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|U Chain U, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|V Chain V, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|W Chain W, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
pdb|3MQT|X Chain X, Crystal Structure Of A Mandelate RacemaseMUCONATE
LACTONIZING ENZYME From Shewanella Pealeana
Length = 394
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 115 EELEHFQNLAKAQSPKNGPSETNAALEFAVNTLEVQNILVI--GHSDCGGIQALMRMQDD 172
++L Q LA A + + +E + A LE I V+ ++ CGG+ L+R+ D
Sbjct: 239 DDLIGHQKLAAAINTRLCGAEMSTTRFEAQEWLEKTGISVVQSDYNRCGGVTELLRIMDI 298
Query: 173 VD--SRQSLTENWVVNAKVAKFRTKAYTAHLS 202
+ + Q + NW A R H+S
Sbjct: 299 CEHHNAQLMPHNWKTGITAAAARHFGIVCHIS 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,124,242
Number of Sequences: 62578
Number of extensions: 255841
Number of successful extensions: 600
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 26
length of query: 280
length of database: 14,973,337
effective HSP length: 98
effective length of query: 182
effective length of database: 8,840,693
effective search space: 1609006126
effective search space used: 1609006126
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)