Query 023616
Match_columns 280
No_of_seqs 199 out of 1323
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:22:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 6.9E-53 1.5E-57 391.1 20.3 228 46-280 35-301 (301)
2 PLN03014 carbonic anhydrase 100.0 3.4E-49 7.5E-54 371.0 22.3 218 40-263 77-333 (347)
3 PLN03019 carbonic anhydrase 100.0 1.4E-47 3.1E-52 358.4 22.9 213 44-263 76-327 (330)
4 PLN00416 carbonate dehydratase 100.0 9.5E-44 2.1E-48 325.7 22.6 213 42-263 2-254 (258)
5 PLN02154 carbonic anhydrase 100.0 4.3E-42 9.3E-47 317.4 21.7 196 75-280 57-290 (290)
6 PRK10437 carbonic anhydrase; P 100.0 1.6E-36 3.4E-41 272.3 19.9 160 97-261 3-198 (220)
7 cd00884 beta_CA_cladeB Carboni 100.0 5.5E-36 1.2E-40 263.8 17.1 150 104-254 1-190 (190)
8 PRK15219 carbonic anhydrase; P 100.0 2E-35 4.3E-40 269.1 19.4 157 92-254 51-244 (245)
9 cd00883 beta_CA_cladeA Carboni 100.0 7.9E-35 1.7E-39 254.6 17.3 145 105-254 1-182 (182)
10 KOG1578 Predicted carbonic anh 100.0 1E-33 2.2E-38 257.5 15.1 215 39-280 23-276 (276)
11 COG0288 CynT Carbonic anhydras 100.0 6.8E-33 1.5E-37 247.0 16.2 162 96-260 2-201 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 5.4E-30 1.2E-34 218.9 14.7 118 94-254 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 99.9 1.1E-26 2.3E-31 196.3 14.7 114 134-251 39-153 (153)
14 cd00382 beta_CA Carbonic anhyd 99.9 2.5E-23 5.5E-28 170.5 11.4 77 134-254 43-119 (119)
15 cd03379 beta_CA_cladeD Carboni 99.8 3.9E-21 8.4E-26 162.0 6.4 101 134-253 40-141 (142)
16 COG1254 AcyP Acylphosphatases 53.8 11 0.00024 29.7 2.3 23 236-258 29-51 (92)
17 KOG1578 Predicted carbonic anh 53.4 6.7 0.00015 36.8 1.2 105 137-241 96-234 (276)
18 PF07859 Abhydrolase_3: alpha/ 52.7 11 0.00024 32.1 2.4 35 134-168 50-89 (211)
19 PF00009 GTP_EFTU: Elongation 41.3 14 0.00031 31.4 1.3 16 148-163 2-17 (188)
20 PF05952 ComX: Bacillus compet 39.9 31 0.00068 24.9 2.7 26 218-243 5-30 (57)
21 PF00355 Rieske: Rieske [2Fe-2 37.3 12 0.00026 28.4 0.2 17 237-253 64-80 (97)
22 cd01891 TypA_BipA TypA (tyrosi 37.3 20 0.00044 30.6 1.6 15 148-162 1-15 (194)
23 COG1116 TauB ABC-type nitrate/ 36.5 20 0.00043 33.3 1.5 15 150-164 30-44 (248)
24 PRK03592 haloalkane dehalogena 34.8 35 0.00077 30.7 2.9 33 137-169 80-112 (295)
25 cd04160 Arfrp1 Arfrp1 subfamil 33.8 21 0.00045 29.0 1.1 14 151-164 1-14 (167)
26 TIGR03100 hydr1_PEP hydrolase, 32.5 47 0.001 30.1 3.3 32 135-167 84-116 (274)
27 TIGR01250 pro_imino_pep_2 prol 32.3 50 0.0011 28.3 3.3 32 137-168 83-114 (288)
28 PF12697 Abhydrolase_6: Alpha/ 31.8 49 0.0011 26.9 3.0 32 136-167 52-83 (228)
29 cd01890 LepA LepA subfamily. 31.8 24 0.00053 29.0 1.2 13 150-162 1-13 (179)
30 PRK00075 cbiD cobalt-precorrin 31.3 5.1E+02 0.011 25.4 10.4 23 136-159 234-256 (361)
31 PLN02824 hydrolase, alpha/beta 30.9 45 0.00097 30.0 2.9 32 137-168 89-120 (294)
32 cd01878 HflX HflX subfamily. 30.7 31 0.00067 29.5 1.7 16 148-163 40-55 (204)
33 PF00561 Abhydrolase_1: alpha/ 30.0 50 0.0011 27.5 2.8 31 135-165 29-59 (230)
34 cd03528 Rieske_RO_ferredoxin R 29.9 20 0.00044 27.2 0.4 16 237-252 60-75 (98)
35 KOG3995 3-hydroxyanthranilate 28.9 42 0.00091 30.8 2.2 46 231-276 195-252 (279)
36 cd03478 Rieske_AIFL_N AIFL (ap 28.7 19 0.00041 27.4 0.0 16 237-252 59-74 (95)
37 cd01887 IF2_eIF5B IF2/eIF5B (i 28.5 33 0.00072 27.7 1.4 13 150-162 1-13 (168)
38 PRK10566 esterase; Provisional 28.0 63 0.0014 28.1 3.3 27 138-164 93-121 (249)
39 TIGR00312 cbiD cobalamin biosy 27.3 5.9E+02 0.013 24.8 10.1 23 136-159 221-243 (347)
40 cd04169 RF3 RF3 subfamily. Pe 27.0 38 0.00081 31.3 1.7 15 149-163 2-16 (267)
41 cd04167 Snu114p Snu114p subfam 26.8 34 0.00073 29.8 1.3 14 150-163 1-14 (213)
42 cd03548 Rieske_RO_Alpha_OMO_CA 25.0 40 0.00087 27.8 1.3 18 237-254 76-93 (136)
43 PF01764 Lipase_3: Lipase (cla 24.8 1E+02 0.0022 24.3 3.7 33 136-168 50-82 (140)
44 TIGR02377 MocE_fam_FeS Rieske 24.6 31 0.00067 26.9 0.6 16 237-252 62-77 (101)
45 cd01897 NOG NOG1 is a nucleola 24.6 44 0.00095 27.1 1.5 15 150-164 1-15 (168)
46 PRK14432 acylphosphatase; Prov 24.1 58 0.0013 25.4 2.0 20 236-255 27-46 (93)
47 cd01889 SelB_euk SelB subfamil 24.0 43 0.00093 28.4 1.4 12 151-162 2-13 (192)
48 KOG4387 Ornithine decarboxylas 23.5 73 0.0016 28.4 2.7 24 135-158 120-143 (191)
49 cd01883 EF1_alpha Eukaryotic e 23.2 41 0.00088 29.6 1.1 12 151-162 1-12 (219)
50 TIGR02378 nirD_assim_sml nitri 22.7 33 0.00071 26.7 0.4 16 237-252 67-82 (105)
51 PRK14440 acylphosphatase; Prov 22.7 65 0.0014 25.0 2.0 22 236-257 28-49 (90)
52 cd04170 EF-G_bact Elongation f 22.5 43 0.00093 30.4 1.1 12 151-162 1-12 (268)
53 cd04321 ScAspRS_mt_like_N ScAs 22.2 93 0.002 23.4 2.8 21 236-256 1-23 (86)
54 cd03529 Rieske_NirD Assimilato 22.1 32 0.0007 26.7 0.2 16 237-252 66-81 (103)
55 cd03530 Rieske_NirD_small_Baci 21.9 29 0.00063 26.5 -0.1 15 237-251 61-75 (98)
56 PF08477 Miro: Miro-like prote 21.5 55 0.0012 25.0 1.4 12 151-162 1-12 (119)
57 COG2146 {NirD} Ferredoxin subu 21.5 39 0.00085 26.9 0.6 17 237-253 66-82 (106)
58 cd01862 Rab7 Rab7 subfamily. 21.4 54 0.0012 26.5 1.5 13 151-163 2-14 (172)
59 PF08184 Cuticle_2: Cuticle pr 21.1 48 0.001 23.3 0.9 13 240-252 7-19 (59)
60 PRK09511 nirD nitrite reductas 21.0 32 0.0007 27.3 0.0 16 237-252 70-85 (108)
61 PRK14430 acylphosphatase; Prov 21.0 73 0.0016 24.8 2.0 20 236-255 29-48 (92)
62 cd03474 Rieske_T4moC Toluene-4 20.9 40 0.00087 26.2 0.5 15 237-251 61-75 (108)
63 PRK14445 acylphosphatase; Prov 20.8 94 0.002 24.0 2.6 20 236-255 29-48 (91)
64 PRK14423 acylphosphatase; Prov 20.8 88 0.0019 24.3 2.4 20 236-255 30-49 (92)
65 PF08538 DUF1749: Protein of u 20.8 79 0.0017 30.3 2.5 35 135-169 89-128 (303)
66 PF00326 Peptidase_S9: Prolyl 20.7 79 0.0017 27.0 2.4 35 134-168 46-82 (213)
67 PRK13946 shikimate kinase; Pro 20.6 76 0.0017 27.1 2.3 25 141-165 2-26 (184)
68 TIGR02427 protocat_pcaD 3-oxoa 20.3 1.7E+02 0.0036 24.2 4.3 31 135-165 64-94 (251)
69 cd04114 Rab30 Rab30 subfamily. 20.2 60 0.0013 26.3 1.5 16 149-164 7-22 (169)
70 PF08472 S6PP_C: Sucrose-6-pho 20.1 92 0.002 26.3 2.5 45 104-148 32-79 (133)
71 PRK07581 hypothetical protein; 20.0 97 0.0021 28.6 3.0 25 145-169 118-143 (339)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=6.9e-53 Score=391.10 Aligned_cols=228 Identities=50% Similarity=0.866 Sum_probs=198.8
Q ss_pred hHHHHHhhhhhhhccc-cccccccccccchHhhhhhhccccccCcccCCcHHHHHHHHHHHHHhHhcccccChHHHHHhh
Q 023616 46 IRDAQQGFTPVLKRRS-FSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLA 124 (280)
Q Consensus 46 ~~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~L~~Gn~rF~~~~~~~~~~~f~~La 124 (280)
..-++.+|...+|++. +++.+|+ +|+++||+||+.... +..++++++++|++||.+|+..++.+++++|++|+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~----~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La 108 (301)
T PLN03006 35 LKTTQLRIPASFRRKATNLQVMAS--GKTPGLTQEANGVAI----DRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLA 108 (301)
T ss_pred cceeEecccccccccccchhhhhh--hchHHHHHHHhhccC----CCCCcccHHHHHHHHHHhchhhccccCHHHHHHhc
Confidence 3446788888877665 6779999 999999999986553 22457999999999999999999999999999999
Q ss_pred ccCCCC---------------------------------CCCC-----chHHHHHHHHHhcCcceEEEeccCCchHHHHH
Q 023616 125 KAQSPK---------------------------------NGPS-----ETNAALEFAVNTLEVQNILVIGHSDCGGIQAL 166 (280)
Q Consensus 125 ~GQ~P~---------------------------------~~p~-----~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa 166 (280)
+||+|+ +.|. ++.+||||||.+|||++|||||||+||||+|+
T Consensus 109 ~GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aa 188 (301)
T PLN03006 109 DAQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQAL 188 (301)
T ss_pred cCCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHH
Confidence 999999 0121 37899999999999999999999999999999
Q ss_pred hhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcEEEEEEEEc
Q 023616 167 MRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDL 246 (280)
Q Consensus 167 l~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi 246 (280)
++..+.+. ..++|..|+..+++++..+.....+..++++++.|+++||+.|++||++||+|++++++|+|.|||||||+
T Consensus 189 l~~~~~g~-~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi 267 (301)
T PLN03006 189 MKMEDEGD-SRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNF 267 (301)
T ss_pred hhccccCC-chhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEEC
Confidence 98766543 34799999999998887765433344567788899999999999999999999999999999999999999
Q ss_pred CCceEEEeeccCCCCcCCcccCcceeeccCCCCC
Q 023616 247 LNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 280 (280)
Q Consensus 247 ~tG~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (280)
.||+|+.|+++|+.++++-|+||+|++|||+|||
T Consensus 268 ~tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
T PLN03006 268 VDCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301 (301)
T ss_pred CCceEEEecccccccccccccCCceeeecccccC
Confidence 9999999999999999987789999999999998
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=3.4e-49 Score=371.03 Aligned_cols=218 Identities=34% Similarity=0.567 Sum_probs=191.9
Q ss_pred chhhhhhHHHHHhhhhhhhccccccccccccccchHhhhhhhccccccCcccCCcHHHHHHHHHHHHHhHhcccccChHH
Q 023616 40 TMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEH 119 (280)
Q Consensus 40 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~L~~Gn~rF~~~~~~~~~~~ 119 (280)
.|..+-+|+||++|+++++++++++.+|+ +|++++|++|+.... +...+++++++|++||++|+.+.+.+++++
T Consensus 77 ~m~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~~lerL~~GN~rF~~~~~~~~~~~ 150 (347)
T PLN03014 77 EMGTEAYDEAIEALKKLLIEKEELKTVAA--AKVEQITAALQTGTS----SDKKAFDPVETIKQGFIKFKKEKYETNPAL 150 (347)
T ss_pred hhchhhHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHhcccC----CCCCCcCHHHHHHHHHHHHHhhccccCHHH
Confidence 34455689999999999999999999999 999999999997332 224678999999999999999999999999
Q ss_pred HHHhhccCCCC---------------------------------CCC------CchHHHHHHHHHhcCcceEEEeccCCc
Q 023616 120 FQNLAKAQSPK---------------------------------NGP------SETNAALEFAVNTLEVQNILVIGHSDC 160 (280)
Q Consensus 120 f~~La~GQ~P~---------------------------------~~p------~~v~aSLEYAV~~L~V~~IVV~GHs~C 160 (280)
|++|++||+|+ +.+ ++++++|||||.+|||++|||||||+|
T Consensus 151 ~~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~C 230 (347)
T PLN03014 151 YGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSAC 230 (347)
T ss_pred HHhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCc
Confidence 99999999999 011 247899999999999999999999999
Q ss_pred hHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcEEE
Q 023616 161 GGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIH 240 (280)
Q Consensus 161 GaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~L~~~P~V~~~v~~g~L~I~ 240 (280)
|||+|+++....+....++|..|+..++|++.+........+++++++.|+++||++||++|++||+|++++++|+|.||
T Consensus 231 GaV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~ 310 (347)
T PLN03014 231 GGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALK 310 (347)
T ss_pred hHHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEE
Confidence 99999998654433334799999999999998776655555677788889999999999999999999999999999999
Q ss_pred EEEEEcCCceEEEeeccCCCCcC
Q 023616 241 GGYYDLLNCTFEKWTLDYKGRKV 263 (280)
Q Consensus 241 G~~YDi~tG~v~~l~~~~~~~~~ 263 (280)
|||||++||+|++|..+++.++.
T Consensus 311 G~~YDi~TG~V~~l~~~~~~~~~ 333 (347)
T PLN03014 311 GGYYDFVKGAFELWGLEFGLSET 333 (347)
T ss_pred EEEEECCCceEEEeccccccCCc
Confidence 99999999999999999998876
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.4e-47 Score=358.45 Aligned_cols=213 Identities=36% Similarity=0.598 Sum_probs=186.5
Q ss_pred hhhHHHHHhhhhhhhccccccccccccccchHhhhhhhccccccCcccCCcHHHHHHHHHHHHHhHhcccccChHHHHHh
Q 023616 44 EKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNL 123 (280)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~L~~Gn~rF~~~~~~~~~~~f~~L 123 (280)
+-+++||++|+++++++++++.+|+ +|++++|++|+.... +...+++++++|++||.+|+.+.+.+++++|++|
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~----~~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 76 ESYEDAIEALKKLLIEKDDLKDVAA--AKVKKITAELQAASS----SDSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hhHHHHHHHHHhhcccccccchHHH--HHHHHhhHHhhhccC----CCCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 3589999999999999999999999 999999999997543 2356899999999999999999999999999999
Q ss_pred hccCCCC---------------------------------CCC------CchHHHHHHHHHhcCcceEEEeccCCchHHH
Q 023616 124 AKAQSPK---------------------------------NGP------SETNAALEFAVNTLEVQNILVIGHSDCGGIQ 164 (280)
Q Consensus 124 a~GQ~P~---------------------------------~~p------~~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~ 164 (280)
++||+|+ +.| +++++||||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 9999999 111 2468999999999999999999999999999
Q ss_pred HHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcEEEEEEE
Q 023616 165 ALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYY 244 (280)
Q Consensus 165 Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~Y 244 (280)
|+++....+...+++|..|+..+.|++.......+...++++++.|++ ||+.|++||++||+|++++++|+|.||||+|
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~Y 308 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYY 308 (330)
T ss_pred HHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEE
Confidence 999865443333479999999999998776544334456667777776 9999999999999999999999999999999
Q ss_pred EcCCceEEEeeccCCCCcC
Q 023616 245 DLLNCTFEKWTLDYKGRKV 263 (280)
Q Consensus 245 Di~tG~v~~l~~~~~~~~~ 263 (280)
|++||.|++|..+|+.|+.
T Consensus 309 Dl~TG~V~~~~~~~~~~~~ 327 (330)
T PLN03019 309 DFVNGSFELWELQFGISPV 327 (330)
T ss_pred ECCCceEEEEccccCcCCC
Confidence 9999999999999998865
No 4
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=9.5e-44 Score=325.70 Aligned_cols=213 Identities=38% Similarity=0.637 Sum_probs=186.3
Q ss_pred hhhhhHHHHHhhhhhhhccccccccccccccchHhhhhhhccccccCcccCCcHHHHHHHHHHHHHhHhcccccChHHHH
Q 023616 42 KLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQ 121 (280)
Q Consensus 42 ~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~L~~Gn~rF~~~~~~~~~~~f~ 121 (280)
-++.++.++.+|.++++.++.++.++. .++..+++.|++.. .+|.++|++|++||+||+.+++.+++++|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~ 72 (258)
T PLN00416 2 ATESYEAAIKGLNDLLSTKADLGNVAA--AKIKALTAELKELD-------SSNSDAIERIKTGFTQFKTEKYLKNSTLFN 72 (258)
T ss_pred CcccHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHhcccccCHHHHH
Confidence 456689999999999999999999999 99999999999966 579999999999999999999988999999
Q ss_pred HhhccCCCC---------------------------------CCC------CchHHHHHHHHHhcCcceEEEeccCCchH
Q 023616 122 NLAKAQSPK---------------------------------NGP------SETNAALEFAVNTLEVQNILVIGHSDCGG 162 (280)
Q Consensus 122 ~La~GQ~P~---------------------------------~~p------~~v~aSLEYAV~~L~V~~IVV~GHs~CGa 162 (280)
+|+.||+|+ +.| +++.+||||||.+|||++|||||||+|||
T Consensus 73 ~la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGa 152 (258)
T PLN00416 73 HLAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGG 152 (258)
T ss_pred hhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchH
Confidence 999999999 112 25789999999999999999999999999
Q ss_pred HHHHhhhccCC-cchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcEEEE
Q 023616 163 IQALMRMQDDV-DSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHG 241 (280)
Q Consensus 163 V~Aal~~~~~~-~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~L~~~P~V~~~v~~g~L~I~G 241 (280)
|+||+...+.. ....+++..|+..++|++..........++.+.++.++++||++|+++|++||+|++++++|+|.|||
T Consensus 153 V~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G 232 (258)
T PLN00416 153 IKGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRG 232 (258)
T ss_pred HHHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEE
Confidence 99999753221 11236899999999999876654444455566677889999999999999999999999999999999
Q ss_pred EEEEcCCceEEEeeccCCCCcC
Q 023616 242 GYYDLLNCTFEKWTLDYKGRKV 263 (280)
Q Consensus 242 ~~YDi~tG~v~~l~~~~~~~~~ 263 (280)
|+||++||+|+++..++..++.
T Consensus 233 ~~Ydl~TG~v~~~~~~~~~~p~ 254 (258)
T PLN00416 233 GHYNFVKGTFDLWELDFKTTPA 254 (258)
T ss_pred EEEECCCceEEEeccCcCCCCC
Confidence 9999999999999999988765
No 5
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=4.3e-42 Score=317.39 Aligned_cols=196 Identities=49% Similarity=0.882 Sum_probs=161.9
Q ss_pred HhhhhhhccccccCcccCCcHHHHHHHHHHHHHhHhcccccChHHHHHhhccCCCC------------------------
Q 023616 75 ALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPK------------------------ 130 (280)
Q Consensus 75 ~lt~~l~~~~~~~~~~~~~~~~~l~~L~~Gn~rF~~~~~~~~~~~f~~La~GQ~P~------------------------ 130 (280)
+++.+|.+... +.....+.|++|++||.+|+.+.+.+++++|++|++||+|+
T Consensus 57 ~~~~~~~~~~~----~~~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdl 132 (290)
T PLN02154 57 GIREEFMDLNR----ETETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEA 132 (290)
T ss_pred hhhHHHHhccc----CcchhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCE
Confidence 34555555432 33556688999999999999999999999999999999999
Q ss_pred ---------CC-----CCchHHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHH
Q 023616 131 ---------NG-----PSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKA 196 (280)
Q Consensus 131 ---------~~-----p~~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~ 196 (280)
+. +.++++||||||.+|+|++|||||||+||||+||++.........+++++|+..++++..+...
T Consensus 133 FvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~ 212 (290)
T PLN02154 133 FTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQL 212 (290)
T ss_pred EEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhh
Confidence 01 1257899999999999999999999999999999985332222237999999988877655432
Q ss_pred hhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcEEEEEEEEcCCceEEEeeccCCCCcCCcccCcceeeccC
Q 023616 197 YTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDH 276 (280)
Q Consensus 197 ~~~~~~~~e~~~~~e~~NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi~tG~v~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (280)
..+..++++.++.++++||+.|++||++||+|++++++|+|.||||+||+.||.|+.|+.+.+ +.|+.|++|||
T Consensus 213 ~~~~~~~~~~~~~~e~~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~------~f~~~~~~~~~ 286 (290)
T PLN02154 213 ASSHLSFDEQCRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD------KTNYGFYISDR 286 (290)
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC------cccCceeeccc
Confidence 222345567778899999999999999999999999999999999999999999999998876 46788999999
Q ss_pred CCCC
Q 023616 277 SFWS 280 (280)
Q Consensus 277 ~~~~ 280 (280)
++||
T Consensus 287 ~~~~ 290 (290)
T PLN02154 287 EIWS 290 (290)
T ss_pred cccC
Confidence 9998
No 6
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=1.6e-36 Score=272.34 Aligned_cols=160 Identities=20% Similarity=0.345 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHhHhcccccChHHHHHhhccCCCC------------------C---------------C--CCchHHHHH
Q 023616 97 YFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPK------------------N---------------G--PSETNAALE 141 (280)
Q Consensus 97 ~l~~L~~Gn~rF~~~~~~~~~~~f~~La~GQ~P~------------------~---------------~--p~~v~aSLE 141 (280)
.+++|++||++|..+.+..++++|++++.||+|+ . . ..+++++||
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~le 82 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQ 82 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCcchHHHHH
Confidence 4789999999999998888999999999999999 0 1 124789999
Q ss_pred HHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 023616 142 FAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILN 221 (280)
Q Consensus 142 YAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~ 221 (280)
|||.+|||++|||||||+||||+||++... .+++..|+.++++++..........+.++.++.++++||+.|+++
T Consensus 83 yAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qv~~ 157 (220)
T PRK10437 83 YAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYN 157 (220)
T ss_pred HHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999997532 278999999999998775544444556677888999999999999
Q ss_pred HhcCHHHHHHHhCC-CcEEEEEEEEcCCceEEEeeccCCCC
Q 023616 222 LLTYPWIEERVRKE-LLFIHGGYYDLLNCTFEKWTLDYKGR 261 (280)
Q Consensus 222 L~~~P~V~~~v~~g-~L~I~G~~YDi~tG~v~~l~~~~~~~ 261 (280)
|+++|+|++++++| +|.||||+||++||.|+++..+....
T Consensus 158 L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~ 198 (220)
T PRK10437 158 LGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNR 198 (220)
T ss_pred HhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCch
Confidence 99999999999999 69999999999999999998876654
No 7
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=5.5e-36 Score=263.76 Aligned_cols=150 Identities=43% Similarity=0.639 Sum_probs=129.2
Q ss_pred HHHHhHhcccccChHHHHHhhccCCCC---------------------------------CCC-------CchHHHHHHH
Q 023616 104 RFLSFKKNKYFEELEHFQNLAKAQSPK---------------------------------NGP-------SETNAALEFA 143 (280)
Q Consensus 104 Gn~rF~~~~~~~~~~~f~~La~GQ~P~---------------------------------~~p-------~~v~aSLEYA 143 (280)
||++|+...+.+++++|++|++||+|+ +.+ .++.+|||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 799999998889999999999999999 011 1367999999
Q ss_pred HHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHh
Q 023616 144 VNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLL 223 (280)
Q Consensus 144 V~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~L~ 223 (280)
|.+|+|++|||||||+||||+||++.... ....+++..|+..+++++.......+..+..+..+.+++.||+.|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~~-~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPEDL-LDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhccccc-cCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999986441 12237999999999999887655433445566778899999999999999
Q ss_pred cCHHHHHHHhCCCcEEEEEEEEcCCceEEEe
Q 023616 224 TYPWIEERVRKELLFIHGGYYDLLNCTFEKW 254 (280)
Q Consensus 224 ~~P~V~~~v~~g~L~I~G~~YDi~tG~v~~l 254 (280)
++|+|++++++|+|.||||+||+.||+|+.+
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 8
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=2e-35 Score=269.09 Aligned_cols=157 Identities=18% Similarity=0.222 Sum_probs=130.9
Q ss_pred CCcHHHHHHHHHHHHHhHhcccccChHHH---HHhhccCCCC------------------CC--------------CCch
Q 023616 92 CGGLDYFEEMKQRFLSFKKNKYFEELEHF---QNLAKAQSPK------------------NG--------------PSET 136 (280)
Q Consensus 92 ~~~~~~l~~L~~Gn~rF~~~~~~~~~~~f---~~La~GQ~P~------------------~~--------------p~~v 136 (280)
.+|.+++++|++||+||+.+.+. +++++ .++++||+|+ .+ +.++
T Consensus 51 ~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~~~ 129 (245)
T PRK15219 51 MTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISNDDL 129 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCcch
Confidence 46888999999999999999875 44443 3467999999 11 2457
Q ss_pred HHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhh-cCCChHHHHHHHHHHHH
Q 023616 137 NAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYT-AHLSFDQQCRHCEKESI 215 (280)
Q Consensus 137 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~-~~~~~~e~~~~~e~~NV 215 (280)
++||||||.+|||++|||||||+||||+||++... .+++..|++.++|++....... ...+.++.++.++++||
T Consensus 130 ~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~~~NV 204 (245)
T PRK15219 130 LGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAVARKNV 204 (245)
T ss_pred hhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998643 2789999999999987653221 11234456778999999
Q ss_pred HHHHHHHhc-CHHHHHHHhCCCcEEEEEEEEcCCceEEEe
Q 023616 216 SRSILNLLT-YPWIEERVRKELLFIHGGYYDLLNCTFEKW 254 (280)
Q Consensus 216 ~~qv~~L~~-~P~V~~~v~~g~L~I~G~~YDi~tG~v~~l 254 (280)
+.|+++|++ +|++++++++|+|.||||+||++||+|+++
T Consensus 205 ~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 205 ELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 999999985 899999999999999999999999999986
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=7.9e-35 Score=254.63 Aligned_cols=145 Identities=23% Similarity=0.374 Sum_probs=124.2
Q ss_pred HHHhHhcccccChHHHHHhhccCCCC------------------CC-----------------CCchHHHHHHHHHhcCc
Q 023616 105 FLSFKKNKYFEELEHFQNLAKAQSPK------------------NG-----------------PSETNAALEFAVNTLEV 149 (280)
Q Consensus 105 n~rF~~~~~~~~~~~f~~La~GQ~P~------------------~~-----------------p~~v~aSLEYAV~~L~V 149 (280)
|++|+.+++.+++++|++|++||+|+ .+ ..++.+||||||.+|||
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~~~~asleyAv~~L~v 80 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDLNCLSVLQYAVDVLKV 80 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCcchhhhHHHHHHhcCC
Confidence 68999999999999999999999999 01 12478999999999999
Q ss_pred ceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCC-ChHHHHHHHHHHHHHHHHHHHhcCHHH
Q 023616 150 QNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHL-SFDQQCRHCEKESISRSILNLLTYPWI 228 (280)
Q Consensus 150 ~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~-~~~e~~~~~e~~NV~~qv~~L~~~P~V 228 (280)
++|||||||+||||+|+++... .+++..|+..+++++.......... +.++..+.++++||+.|+++|++||+|
T Consensus 81 ~~IvV~GHs~CGav~a~~~~~~-----~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i 155 (182)
T cd00883 81 KHIIVCGHYGCGGVKAALTGKR-----LGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPIV 155 (182)
T ss_pred CEEEEecCCCchHHHHHHcCCC-----CccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHHH
Confidence 9999999999999999997642 2789999999998876543222222 445667789999999999999999999
Q ss_pred HHHHhC-CCcEEEEEEEEcCCceEEEe
Q 023616 229 EERVRK-ELLFIHGGYYDLLNCTFEKW 254 (280)
Q Consensus 229 ~~~v~~-g~L~I~G~~YDi~tG~v~~l 254 (280)
++++++ |+|.||||+||+.||+|+.+
T Consensus 156 ~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 156 QDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 999999 89999999999999999864
No 10
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-33 Score=257.47 Aligned_cols=215 Identities=35% Similarity=0.561 Sum_probs=187.7
Q ss_pred cchhhhhhHHHHHhhhhhhhccccccccccccccchHhhhhhhccccccCcccCCcHHHHHHHHHHHHHhHhcccccChH
Q 023616 39 KTMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELE 118 (280)
Q Consensus 39 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~L~~Gn~rF~~~~~~~~~~ 118 (280)
..|.....+.++..+..++..+-.+ ++. +++.++|++ ++.++++++||..|..+++..+|.
T Consensus 23 ~~mp~~~~~~~~~~dsrml~~r~~~--~~~--~~~~~~~~~---------------~~~~~~i~~~Fv~~~~~~~~~~p~ 83 (276)
T KOG1578|consen 23 RDMPSPTAVMFTCMDSRMLPTRYNL--VAA--AKIKKLTAE---------------FDTLEDIGDMFVVRNSGNYIPNPT 83 (276)
T ss_pred HhCCCHHHHHHHHHHhhccchhhhh--hhh--hhhhhhhhc---------------cchHHHHHhhHhhhccccCCCChh
Confidence 3444556777888888888888877 777 899999983 368999999999999999999999
Q ss_pred HHHHhhccCCCC---------------------------------------CCCCchHHHHHHHHHhcCcceEEEeccCC
Q 023616 119 HFQNLAKAQSPK---------------------------------------NGPSETNAALEFAVNTLEVQNILVIGHSD 159 (280)
Q Consensus 119 ~f~~La~GQ~P~---------------------------------------~~p~~v~aSLEYAV~~L~V~~IVV~GHs~ 159 (280)
+|..++++|+|+ .+|..+.|+|||||.+|+|++|+||||++
T Consensus 84 ~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~ 163 (276)
T KOG1578|consen 84 LFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSL 163 (276)
T ss_pred hhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEecccc
Confidence 999999999999 12345789999999999999999999999
Q ss_pred chHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCcEE
Q 023616 160 CGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFI 239 (280)
Q Consensus 160 CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~qv~~L~~~P~V~~~v~~g~L~I 239 (280)
||||+++|+....+. ..+|+.+|+-...++...+......+.+++||..|+.+.+..++.+|.+||++++++.+|.+.+
T Consensus 164 cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~ 242 (276)
T KOG1578|consen 164 CGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQV 242 (276)
T ss_pred CCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceee
Confidence 999999999987765 4489999999888888888777778899999999999999999999999999999999999999
Q ss_pred EEEEEEcCCceEEEeeccCCCCcCCcccCcceeeccCCCCC
Q 023616 240 HGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 280 (280)
Q Consensus 240 ~G~~YDi~tG~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (280)
||++||+..|.+++|.+| |+.+..+.+..+.+|+
T Consensus 243 ~G~~Y~fskg~~~~~~ld-------ekt~~~~~~~~~~~~s 276 (276)
T KOG1578|consen 243 HGGYYNFSKGTKEFWELD-------EKTVDGLKTEKRSVYS 276 (276)
T ss_pred eeeeEEeccCceeEEEec-------cccccccccccccccC
Confidence 999999999999999999 2344556777777774
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-33 Score=247.02 Aligned_cols=162 Identities=22% Similarity=0.352 Sum_probs=134.7
Q ss_pred HHHHHHHHHHHHhHhcccccChHHHHHhh-ccCCCC---------------------------------CCC--CchHHH
Q 023616 96 DYFEEMKQRFLSFKKNKYFEELEHFQNLA-KAQSPK---------------------------------NGP--SETNAA 139 (280)
Q Consensus 96 ~~l~~L~~Gn~rF~~~~~~~~~~~f~~La-~GQ~P~---------------------------------~~p--~~v~aS 139 (280)
..++.|++||++|..++++.++.+|+.|+ .||+|+ +.+ .++++|
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~~~l~s 81 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDGSVLRS 81 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCccchhHH
Confidence 46899999999999999989999999987 569999 011 478999
Q ss_pred HHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChH-HHHHHHHHHHHHHH
Q 023616 140 LEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFD-QQCRHCEKESISRS 218 (280)
Q Consensus 140 LEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~-e~~~~~e~~NV~~q 218 (280)
|||||.+|||++||||||++||||+|++.....+.. ++..|+.++.+............+.. +.....++.||+.|
T Consensus 82 leyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~~q 158 (207)
T COG0288 82 LEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVREQ 158 (207)
T ss_pred HHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHHHH
Confidence 999999999999999999999999999988765322 59999999888776654433222222 55667788999999
Q ss_pred HHHHhcCHHHHHHHhCCC-cEEEEEEEEcCCceEEEeeccCCC
Q 023616 219 ILNLLTYPWIEERVRKEL-LFIHGGYYDLLNCTFEKWTLDYKG 260 (280)
Q Consensus 219 v~~L~~~P~V~~~v~~g~-L~I~G~~YDi~tG~v~~l~~~~~~ 260 (280)
+++|+++|.|+.++..|+ |.||||+||++||++..++.....
T Consensus 159 v~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 159 VANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 999999999999988877 999999999999999888765543
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.97 E-value=5.4e-30 Score=218.87 Aligned_cols=118 Identities=29% Similarity=0.416 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHHHhHhcccc---cChHHHHHhhccCCCC------------------CC--------------CCchHH
Q 023616 94 GLDYFEEMKQRFLSFKKNKYF---EELEHFQNLAKAQSPK------------------NG--------------PSETNA 138 (280)
Q Consensus 94 ~~~~l~~L~~Gn~rF~~~~~~---~~~~~f~~La~GQ~P~------------------~~--------------p~~v~a 138 (280)
|.+++++|++||++|.++... .++++|.+|++||+|+ .. +.++++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~~~~~ 80 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDDDVLG 80 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccChhHHH
Confidence 568999999999999987542 2367799999999999 01 235789
Q ss_pred HHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 023616 139 ALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRS 218 (280)
Q Consensus 139 SLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~NV~~q 218 (280)
||||||.+|||++|||||||+||+++|+ ++++||+.|
T Consensus 81 sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~~~nV~~~ 117 (154)
T cd03378 81 SLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AVRANVKAT 117 (154)
T ss_pred HHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HHHHHHHHH
Confidence 9999999999999999999999999986 357899999
Q ss_pred HHHHhcCHHHHH-HHhCCCcEEEEEEEEcCCceEEEe
Q 023616 219 ILNLLTYPWIEE-RVRKELLFIHGGYYDLLNCTFEKW 254 (280)
Q Consensus 219 v~~L~~~P~V~~-~v~~g~L~I~G~~YDi~tG~v~~l 254 (280)
+++|+++|+|++ ++++|+|.||||+||++||+|+++
T Consensus 118 v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 118 VAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 999999999888 999999999999999999999874
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=99.94 E-value=1.1e-26 Score=196.35 Aligned_cols=114 Identities=26% Similarity=0.407 Sum_probs=92.9
Q ss_pred CchHHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHH-HHhhcCCChHHHHHHHHH
Q 023616 134 SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRT-KAYTAHLSFDQQCRHCEK 212 (280)
Q Consensus 134 ~~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~-~~~~~~~~~~e~~~~~e~ 212 (280)
.++++|||||+.+|||++|||||||+|||+++++.... ..+++.+|++.+.++.... ..........+....+++
T Consensus 39 ~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (153)
T PF00484_consen 39 DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVE 114 (153)
T ss_dssp HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHH
T ss_pred cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHH
Confidence 46789999999999999999999999999999887432 2379999999999988773 322222222233444589
Q ss_pred HHHHHHHHHHhcCHHHHHHHhCCCcEEEEEEEEcCCceE
Q 023616 213 ESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTF 251 (280)
Q Consensus 213 ~NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi~tG~v 251 (280)
+||+.|+++|+++|+|++++++|+|.||||+||++||+|
T Consensus 115 ~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~v 153 (153)
T PF00484_consen 115 ENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGKV 153 (153)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTEE
T ss_pred HHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCccC
Confidence 999999999999999999999999999999999999986
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.90 E-value=2.5e-23 Score=170.54 Aligned_cols=77 Identities=36% Similarity=0.581 Sum_probs=72.5
Q ss_pred CchHHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhHHHHHHHHHhhcCCChHHHHHHHHHH
Q 023616 134 SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKE 213 (280)
Q Consensus 134 ~~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~~a~~~~~~~~~~~~~~e~~~~~e~~ 213 (280)
.++++|||||+.+|||++|+|||||+|||+++ ++++
T Consensus 43 ~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a--------------------------------------------~~~~ 78 (119)
T cd00382 43 LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA--------------------------------------------LVEE 78 (119)
T ss_pred ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--------------------------------------------HHHH
Confidence 47899999999999999999999999999996 3578
Q ss_pred HHHHHHHHHhcCHHHHHHHhCCCcEEEEEEEEcCCceEEEe
Q 023616 214 SISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKW 254 (280)
Q Consensus 214 NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi~tG~v~~l 254 (280)
||+.|+++|+++|+++++++++++.|||++||++||+|+++
T Consensus 79 nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~tG~v~~~ 119 (119)
T cd00382 79 NVREQVENLRSHPLIQEAVAPGELKVHGWVYDIETGKLEVL 119 (119)
T ss_pred HHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCCCEEEeC
Confidence 99999999999999999999999999999999999999874
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=99.83 E-value=3.9e-21 Score=161.97 Aligned_cols=101 Identities=19% Similarity=0.206 Sum_probs=75.0
Q ss_pred CchHHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCCcchhhhHHHHHHhhH-HHHHHHHHhhcCCChHHHHHHHHH
Q 023616 134 SETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAK-VAKFRTKAYTAHLSFDQQCRHCEK 212 (280)
Q Consensus 134 ~~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~~~~~~~i~~wl~~i~-~a~~~~~~~~~~~~~~e~~~~~e~ 212 (280)
.++++|||||+.+||+++|+|||||+|||++++.+. +..|+.... +. ..... ...........++
T Consensus 40 ~~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~~----------~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~ 105 (142)
T cd03379 40 DDAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDEE----------LKEKMKERGIAE-AYGGI---DKEFWFLGFDDLE 105 (142)
T ss_pred HhHHHHHHHHHHHhCCCEEEEEeecCCcceEecHHH----------HHHHHHHhcCcc-hhccc---CcchhhcccccHH
Confidence 478999999999999999999999999999986542 334554311 11 00000 0111112234678
Q ss_pred HHHHHHHHHHhcCHHHHHHHhCCCcEEEEEEEEcCCceEEE
Q 023616 213 ESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEK 253 (280)
Q Consensus 213 ~NV~~qv~~L~~~P~V~~~v~~g~L~I~G~~YDi~tG~v~~ 253 (280)
+||+.|+++|+++|+|++ ++.||||+||++||+|+.
T Consensus 106 ~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~tG~v~~ 141 (142)
T cd03379 106 ESVREDVERIRNHPLIPD-----DVPVHGYVYDVKTGKLTE 141 (142)
T ss_pred HHHHHHHHHHHhCcCccC-----CCEEEEEEEECCCCEEEe
Confidence 999999999999999985 899999999999999985
No 16
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=53.83 E-value=11 Score=29.73 Aligned_cols=23 Identities=17% Similarity=-0.052 Sum_probs=19.5
Q ss_pred CcEEEEEEEEcCCceEEEeeccC
Q 023616 236 LLFIHGGYYDLLNCTFEKWTLDY 258 (280)
Q Consensus 236 ~L~I~G~~YDi~tG~v~~l~~~~ 258 (280)
.|.|+||+++..+|.|+.+.-..
T Consensus 29 ~lgl~G~V~N~~DGsVeiva~G~ 51 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVAEGP 51 (92)
T ss_pred HCCCEEEEEECCCCeEEEEEEcC
Confidence 56799999999999999886443
No 17
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=53.40 E-value=6.7 Score=36.83 Aligned_cols=105 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred HHHHHHHHHhcCcceEEEeccCCchHHHHHhhhccCC--cch---hhhHHHHHHhhHHHHHHH---------HHh-----
Q 023616 137 NAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDV--DSR---QSLTENWVVNAKVAKFRT---------KAY----- 197 (280)
Q Consensus 137 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~~--~~~---~~~i~~wl~~i~~a~~~~---------~~~----- 197 (280)
-++|+-|+..-...+|+||||.+|=+|.......... ..+ ...++.|+..+.-....+ +..
T Consensus 96 ~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~~~~ 175 (276)
T KOG1578|consen 96 PLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLCGGIKGLMSFSL 175 (276)
T ss_pred ceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccCCchhhcccccc
Confidence 4788888888999999999999999999766654311 111 157889987654211000 000
Q ss_pred -hcCCCh---------HH---HHHHHHHHHHHHHHHHHhcCHHHH--HHHhCCCcEEEE
Q 023616 198 -TAHLSF---------DQ---QCRHCEKESISRSILNLLTYPWIE--ERVRKELLFIHG 241 (280)
Q Consensus 198 -~~~~~~---------~e---~~~~~e~~NV~~qv~~L~~~P~V~--~~v~~g~L~I~G 241 (280)
.+..++ .+ ..+.+...|..+|..|...+.+.. ..+......+++
T Consensus 176 ~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~ 234 (276)
T KOG1578|consen 176 EAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREA 234 (276)
T ss_pred cCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 000011 11 122456678999999998877766 344455555555
No 18
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=52.65 E-value=11 Score=32.10 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=30.1
Q ss_pred CchHHHHHHHHHh-----cCcceEEEeccCCchHHHHHhh
Q 023616 134 SETNAALEFAVNT-----LEVQNILVIGHSDCGGIQALMR 168 (280)
Q Consensus 134 ~~v~aSLEYAV~~-----L~V~~IVV~GHs~CGaV~Aal~ 168 (280)
.++.++++|-..+ ...+.|+|+|||..|.+.+.+.
T Consensus 50 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 50 EDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred cccccceeeeccccccccccccceEEeecccccchhhhhh
Confidence 4678999999998 8899999999999998876544
No 19
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=41.35 E-value=14 Score=31.41 Aligned_cols=16 Identities=44% Similarity=0.843 Sum_probs=13.3
Q ss_pred CcceEEEeccCCchHH
Q 023616 148 EVQNILVIGHSDCGGI 163 (280)
Q Consensus 148 ~V~~IVV~GHs~CGaV 163 (280)
.+.+|.|+||.+||=-
T Consensus 2 ~~~~I~i~G~~~sGKT 17 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKT 17 (188)
T ss_dssp TEEEEEEEESTTSSHH
T ss_pred CEEEEEEECCCCCCcE
Confidence 3578999999999953
No 20
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=39.92 E-value=31 Score=24.95 Aligned_cols=26 Identities=15% Similarity=0.136 Sum_probs=22.8
Q ss_pred HHHHHhcCHHHHHHHhCCCcEEEEEE
Q 023616 218 SILNLLTYPWIEERVRKELLFIHGGY 243 (280)
Q Consensus 218 qv~~L~~~P~V~~~v~~g~L~I~G~~ 243 (280)
-|..|.+||-+-+.+++|+..+.|.-
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv~ 30 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGVD 30 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecCC
Confidence 46788999999999999999999853
No 21
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=37.32 E-value=12 Score=28.40 Aligned_cols=17 Identities=24% Similarity=0.096 Sum_probs=13.6
Q ss_pred cEEEEEEEEcCCceEEE
Q 023616 237 LFIHGGYYDLLNCTFEK 253 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~~ 253 (280)
...|||.||+.||++..
T Consensus 64 Cp~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 64 CPCHGWRFDLDTGECVG 80 (97)
T ss_dssp ETTTTEEEETTTSBEEE
T ss_pred eCCcCCEEeCCCceEec
Confidence 34799999999997644
No 22
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=37.29 E-value=20 Score=30.56 Aligned_cols=15 Identities=40% Similarity=0.787 Sum_probs=13.0
Q ss_pred CcceEEEeccCCchH
Q 023616 148 EVQNILVIGHSDCGG 162 (280)
Q Consensus 148 ~V~~IVV~GHs~CGa 162 (280)
.+.+|+|+||.+||=
T Consensus 1 ~~r~i~ivG~~~~GK 15 (194)
T cd01891 1 DIRNIAIIAHVDHGK 15 (194)
T ss_pred CccEEEEEecCCCCH
Confidence 367999999999994
No 23
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=36.52 E-value=20 Score=33.32 Aligned_cols=15 Identities=27% Similarity=0.654 Sum_probs=12.2
Q ss_pred ceEEEeccCCchHHH
Q 023616 150 QNILVIGHSDCGGIQ 164 (280)
Q Consensus 150 ~~IVV~GHs~CGaV~ 164 (280)
+-|.|+|||+||=-+
T Consensus 30 EfvsilGpSGcGKST 44 (248)
T COG1116 30 EFVAILGPSGCGKST 44 (248)
T ss_pred CEEEEECCCCCCHHH
Confidence 568899999999643
No 24
>PRK03592 haloalkane dehalogenase; Provisional
Probab=34.78 E-value=35 Score=30.68 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=26.6
Q ss_pred HHHHHHHHHhcCcceEEEeccCCchHHHHHhhh
Q 023616 137 NAALEFAVNTLEVQNILVIGHSDCGGIQALMRM 169 (280)
Q Consensus 137 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~ 169 (280)
..-|.--+.+|+.+.++|+|||-.|.|...+..
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~ 112 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDWAA 112 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHH
Confidence 355666678899999999999999999865544
No 25
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=33.83 E-value=21 Score=29.01 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=11.7
Q ss_pred eEEEeccCCchHHH
Q 023616 151 NILVIGHSDCGGIQ 164 (280)
Q Consensus 151 ~IVV~GHs~CGaV~ 164 (280)
+|+|+||.+||=-.
T Consensus 1 ~i~~vG~~~~GKst 14 (167)
T cd04160 1 SVLILGLDNAGKTT 14 (167)
T ss_pred CEEEEecCCCCHHH
Confidence 58999999999644
No 26
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=32.52 E-value=47 Score=30.13 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=21.2
Q ss_pred chHHHHHHHHHhc-CcceEEEeccCCchHHHHHh
Q 023616 135 ETNAALEFAVNTL-EVQNILVIGHSDCGGIQALM 167 (280)
Q Consensus 135 ~v~aSLEYAV~~L-~V~~IVV~GHs~CGaV~Aal 167 (280)
++.+++++-...+ +.+.|+++|||- ||+-+++
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 4556666554444 678899999998 5555543
No 27
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=32.31 E-value=50 Score=28.27 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCcceEEEeccCCchHHHHHhh
Q 023616 137 NAALEFAVNTLEVQNILVIGHSDCGGIQALMR 168 (280)
Q Consensus 137 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~ 168 (280)
..-+..-+.+++.+.++|+|||--|.+...+.
T Consensus 83 ~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a 114 (288)
T TIGR01250 83 VDELEEVREKLGLDKFYLLGHSWGGMLAQEYA 114 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeehHHHHHHHHH
Confidence 34455567889999999999999999876543
No 28
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=31.81 E-value=49 Score=26.88 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=26.1
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCchHHHHHh
Q 023616 136 TNAALEFAVNTLEVQNILVIGHSDCGGIQALM 167 (280)
Q Consensus 136 v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal 167 (280)
....|...+..++.+.|+|+|||-=|.+...+
T Consensus 52 ~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~ 83 (228)
T PF12697_consen 52 YAEDLAELLDALGIKKVILVGHSMGGMIALRL 83 (228)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEETHHHHHHHHH
T ss_pred hhhhhhhccccccccccccccccccccccccc
Confidence 35778888999999999999999877766544
No 29
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=31.78 E-value=24 Score=29.02 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=11.4
Q ss_pred ceEEEeccCCchH
Q 023616 150 QNILVIGHSDCGG 162 (280)
Q Consensus 150 ~~IVV~GHs~CGa 162 (280)
.+|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999994
No 30
>PRK00075 cbiD cobalt-precorrin-6A synthase; Reviewed
Probab=31.27 E-value=5.1e+02 Score=25.36 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=19.3
Q ss_pred hHHHHHHHHHhcCcceEEEeccCC
Q 023616 136 TNAALEFAVNTLEVQNILVIGHSD 159 (280)
Q Consensus 136 v~aSLEYAV~~L~V~~IVV~GHs~ 159 (280)
+.-+|++|+. .+++.|+++||-+
T Consensus 234 iG~~L~~A~~-~g~~~i~l~G~~G 256 (361)
T PRK00075 234 VGPMLKAAAR-LGVKKVLLVGHPG 256 (361)
T ss_pred HHHHHHHHHH-cCCCEEEEEeeHH
Confidence 4678888887 8999999999964
No 31
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=30.87 E-value=45 Score=30.00 Aligned_cols=32 Identities=16% Similarity=0.025 Sum_probs=24.9
Q ss_pred HHHHHHHHHhcCcceEEEeccCCchHHHHHhh
Q 023616 137 NAALEFAVNTLEVQNILVIGHSDCGGIQALMR 168 (280)
Q Consensus 137 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~ 168 (280)
..-|.-.+.+|+++.++++|||-.|.|...+.
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a 120 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVGGVVGLQAA 120 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHH
Confidence 44555556788999999999999999886443
No 32
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=30.71 E-value=31 Score=29.47 Aligned_cols=16 Identities=13% Similarity=0.453 Sum_probs=13.5
Q ss_pred CcceEEEeccCCchHH
Q 023616 148 EVQNILVIGHSDCGGI 163 (280)
Q Consensus 148 ~V~~IVV~GHs~CGaV 163 (280)
++..|+|+||.+||=-
T Consensus 40 ~~~~I~iiG~~g~GKS 55 (204)
T cd01878 40 GIPTVALVGYTNAGKS 55 (204)
T ss_pred CCCeEEEECCCCCCHH
Confidence 4678999999999953
No 33
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=30.00 E-value=50 Score=27.51 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=25.9
Q ss_pred chHHHHHHHHHhcCcceEEEeccCCchHHHH
Q 023616 135 ETNAALEFAVNTLEVQNILVIGHSDCGGIQA 165 (280)
Q Consensus 135 ~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~A 165 (280)
+....+++-..+|+++.|.++|||-=|.+..
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~ 59 (230)
T PF00561_consen 29 DLAADLEALREALGIKKINLVGHSMGGMLAL 59 (230)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEETHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECCChHHHH
Confidence 4678999999999999999999998554443
No 34
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=29.93 E-value=20 Score=27.19 Aligned_cols=16 Identities=31% Similarity=0.418 Sum_probs=13.6
Q ss_pred cEEEEEEEEcCCceEE
Q 023616 237 LFIHGGYYDLLNCTFE 252 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~ 252 (280)
...|||.||+.||...
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 4589999999999764
No 35
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=28.86 E-value=42 Score=30.78 Aligned_cols=46 Identities=17% Similarity=0.219 Sum_probs=36.6
Q ss_pred HHhCCCcEEEEE------------EEEcCCceEEEeeccCCCCcCCcccCcceeeccC
Q 023616 231 RVRKELLFIHGG------------YYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDH 276 (280)
Q Consensus 231 ~v~~g~L~I~G~------------~YDi~tG~v~~l~~~~~~~~~~~~~~~~~~~~~~ 276 (280)
.+++|.+.|+|- -||..+|.|+.|-.-...|.+-+++|-+|++|.-
T Consensus 195 e~~~gp~~~~g~~y~t~v~~~g~gs~~~~~~~v~~~~w~~e~s~vv~~~g~~~~~~~~ 252 (279)
T KOG3995|consen 195 ELQAGPLSLFGDTYETQVIAYGQGSSEGLRQNVDVWLWQLEGSSVVTMGGRRLSLAPD 252 (279)
T ss_pred HHhcCCeeeeCccceeeEEEeccccchhhcCceEEEEEEecCceEEeecCeEEeeCCc
Confidence 366788888883 5688999999998888777887777878888754
No 36
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=28.71 E-value=19 Score=27.42 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=13.3
Q ss_pred cEEEEEEEEcCCceEE
Q 023616 237 LFIHGGYYDLLNCTFE 252 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~ 252 (280)
...|||.||+.||.+.
T Consensus 59 CP~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 59 CPWHGACFNLRTGDIE 74 (95)
T ss_pred cCCCCCEEECCCCcCc
Confidence 4589999999999654
No 37
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=28.53 E-value=33 Score=27.70 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.4
Q ss_pred ceEEEeccCCchH
Q 023616 150 QNILVIGHSDCGG 162 (280)
Q Consensus 150 ~~IVV~GHs~CGa 162 (280)
+.|+|+|+++||=
T Consensus 1 ~~i~iiG~~~~GK 13 (168)
T cd01887 1 PVVTVMGHVDHGK 13 (168)
T ss_pred CEEEEEecCCCCH
Confidence 4699999999995
No 38
>PRK10566 esterase; Provisional
Probab=27.96 E-value=63 Score=28.08 Aligned_cols=27 Identities=19% Similarity=-0.020 Sum_probs=16.6
Q ss_pred HHHHHHHHh--cCcceEEEeccCCchHHH
Q 023616 138 AALEFAVNT--LEVQNILVIGHSDCGGIQ 164 (280)
Q Consensus 138 aSLEYAV~~--L~V~~IVV~GHs~CGaV~ 164 (280)
..+++.... ++.+.|+|+|||-=|.+.
T Consensus 93 ~~~~~l~~~~~~~~~~i~v~G~S~Gg~~a 121 (249)
T PRK10566 93 TLRAAIREEGWLLDDRLAVGGASMGGMTA 121 (249)
T ss_pred HHHHHHHhcCCcCccceeEEeecccHHHH
Confidence 344444433 345789999999844444
No 39
>TIGR00312 cbiD cobalamin biosynthesis protein CbiD. role_id
Probab=27.32 E-value=5.9e+02 Score=24.81 Aligned_cols=23 Identities=30% Similarity=0.507 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCcceEEEeccCC
Q 023616 136 TNAALEFAVNTLEVQNILVIGHSD 159 (280)
Q Consensus 136 v~aSLEYAV~~L~V~~IVV~GHs~ 159 (280)
+..+|++|.. ++++.|+++||-+
T Consensus 221 iG~~L~~a~~-~g~~~i~l~G~~G 243 (347)
T TIGR00312 221 LGSMLVAAAA-VGVEEILLLGHAG 243 (347)
T ss_pred hHHHHHHHHH-cCCCEEEEEeEhH
Confidence 5688999988 6999999999975
No 40
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=27.02 E-value=38 Score=31.25 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=13.1
Q ss_pred cceEEEeccCCchHH
Q 023616 149 VQNILVIGHSDCGGI 163 (280)
Q Consensus 149 V~~IVV~GHs~CGaV 163 (280)
.++|.|+||.+||=-
T Consensus 2 ~Rni~ivGh~~~GKT 16 (267)
T cd04169 2 RRTFAIISHPDAGKT 16 (267)
T ss_pred ccEEEEEcCCCCCHH
Confidence 579999999999953
No 41
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=26.82 E-value=34 Score=29.85 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=11.7
Q ss_pred ceEEEeccCCchHH
Q 023616 150 QNILVIGHSDCGGI 163 (280)
Q Consensus 150 ~~IVV~GHs~CGaV 163 (280)
++|+|+||.++|=-
T Consensus 1 rnv~iiG~~~~GKT 14 (213)
T cd04167 1 RNVAIAGHLHHGKT 14 (213)
T ss_pred CcEEEEcCCCCCHH
Confidence 47999999999943
No 42
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=25.01 E-value=40 Score=27.78 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=15.3
Q ss_pred cEEEEEEEEcCCceEEEe
Q 023616 237 LFIHGGYYDLLNCTFEKW 254 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~~l 254 (280)
...|||-||+.||++..+
T Consensus 76 Cp~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 76 CWYHGWTYRLDDGKLVTI 93 (136)
T ss_pred ecCCccEEeCCCccEEEc
Confidence 458999999999988765
No 43
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=24.81 E-value=1e+02 Score=24.30 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCchHHHHHhh
Q 023616 136 TNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 168 (280)
Q Consensus 136 v~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~ 168 (280)
+...|.-.+...+-..|+|+|||==||+...+.
T Consensus 50 ~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a 82 (140)
T PF01764_consen 50 ILDALKELVEKYPDYSIVITGHSLGGALASLAA 82 (140)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCccchhhccchHHHHHHHHH
Confidence 345555566666778999999999998886554
No 44
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=24.64 E-value=31 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.129 Sum_probs=13.5
Q ss_pred cEEEEEEEEcCCceEE
Q 023616 237 LFIHGGYYDLLNCTFE 252 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~ 252 (280)
...|||.||+.||+..
T Consensus 62 CP~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 62 CPKHAGCFDYRTGEAL 77 (101)
T ss_pred CCccCCEEECCCCccc
Confidence 4589999999999663
No 45
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=24.55 E-value=44 Score=27.10 Aligned_cols=15 Identities=13% Similarity=0.403 Sum_probs=12.4
Q ss_pred ceEEEeccCCchHHH
Q 023616 150 QNILVIGHSDCGGIQ 164 (280)
Q Consensus 150 ~~IVV~GHs~CGaV~ 164 (280)
+.|+|+|++++|=-.
T Consensus 1 ~~i~~~G~~~~GKss 15 (168)
T cd01897 1 PTLVIAGYPNVGKSS 15 (168)
T ss_pred CeEEEEcCCCCCHHH
Confidence 479999999999643
No 46
>PRK14432 acylphosphatase; Provisional
Probab=24.09 E-value=58 Score=25.43 Aligned_cols=20 Identities=15% Similarity=0.017 Sum_probs=17.3
Q ss_pred CcEEEEEEEEcCCceEEEee
Q 023616 236 LLFIHGGYYDLLNCTFEKWT 255 (280)
Q Consensus 236 ~L~I~G~~YDi~tG~v~~l~ 255 (280)
++.|.||+.+..+|.|+.+.
T Consensus 27 ~lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 27 NMKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred HhCCEEEEEECCCCCEEEEE
Confidence 56799999999999998764
No 47
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=24.00 E-value=43 Score=28.45 Aligned_cols=12 Identities=50% Similarity=0.850 Sum_probs=10.8
Q ss_pred eEEEeccCCchH
Q 023616 151 NILVIGHSDCGG 162 (280)
Q Consensus 151 ~IVV~GHs~CGa 162 (280)
+|+|+||.++|=
T Consensus 2 ~i~i~G~~~~GK 13 (192)
T cd01889 2 NVGVLGHVDSGK 13 (192)
T ss_pred eEEEEecCCCCH
Confidence 589999999995
No 48
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=23.46 E-value=73 Score=28.37 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.3
Q ss_pred chHHHHHHHHHhcCcceEEEeccC
Q 023616 135 ETNAALEFAVNTLEVQNILVIGHS 158 (280)
Q Consensus 135 ~v~aSLEYAV~~L~V~~IVV~GHs 158 (280)
+..+-||||.+.|++..++||=|-
T Consensus 120 ~lvalLEfAEekl~~d~Vfi~F~K 143 (191)
T KOG4387|consen 120 GLVALLEFAEEKLHVDKVFICFDK 143 (191)
T ss_pred hHHHHHHHHHHhhccceEEEEEec
Confidence 467999999999999999999653
No 49
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=23.17 E-value=41 Score=29.61 Aligned_cols=12 Identities=58% Similarity=1.057 Sum_probs=10.7
Q ss_pred eEEEeccCCchH
Q 023616 151 NILVIGHSDCGG 162 (280)
Q Consensus 151 ~IVV~GHs~CGa 162 (280)
+|.|+||.+||=
T Consensus 1 nv~i~Gh~~~GK 12 (219)
T cd01883 1 NLVVIGHVDAGK 12 (219)
T ss_pred CEEEecCCCCCh
Confidence 589999999994
No 50
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=22.71 E-value=33 Score=26.66 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=13.2
Q ss_pred cEEEEEEEEcCCceEE
Q 023616 237 LFIHGGYYDLLNCTFE 252 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~ 252 (280)
...|||.||+.||+..
T Consensus 67 Cp~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 67 CPLHKRNFRLEDGRCL 82 (105)
T ss_pred CCcCCCEEEcCCcccc
Confidence 3479999999999654
No 51
>PRK14440 acylphosphatase; Provisional
Probab=22.68 E-value=65 Score=24.95 Aligned_cols=22 Identities=23% Similarity=0.039 Sum_probs=18.2
Q ss_pred CcEEEEEEEEcCCceEEEeecc
Q 023616 236 LLFIHGGYYDLLNCTFEKWTLD 257 (280)
Q Consensus 236 ~L~I~G~~YDi~tG~v~~l~~~ 257 (280)
++.|.||+.+..+|.|+.+.-+
T Consensus 28 ~~gl~G~V~N~~dG~Vei~~~G 49 (90)
T PRK14440 28 RLGIKGYAKNLPDGSVEVVAEG 49 (90)
T ss_pred HcCCEEEEEECCCCCEEEEEEc
Confidence 5669999999999999886533
No 52
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=22.46 E-value=43 Score=30.41 Aligned_cols=12 Identities=50% Similarity=0.888 Sum_probs=10.7
Q ss_pred eEEEeccCCchH
Q 023616 151 NILVIGHSDCGG 162 (280)
Q Consensus 151 ~IVV~GHs~CGa 162 (280)
+|+|+||++||=
T Consensus 1 ni~ivG~~gsGK 12 (268)
T cd04170 1 NIALVGHSGSGK 12 (268)
T ss_pred CEEEECCCCCCH
Confidence 589999999994
No 53
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=22.23 E-value=93 Score=23.38 Aligned_cols=21 Identities=10% Similarity=-0.111 Sum_probs=17.3
Q ss_pred CcEEEEEEEEcCC--ceEEEeec
Q 023616 236 LLFIHGGYYDLLN--CTFEKWTL 256 (280)
Q Consensus 236 ~L~I~G~~YDi~t--G~v~~l~~ 256 (280)
++.|+||++.+.. |.+.|+++
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~L 23 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADL 23 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEE
Confidence 3679999999997 68888876
No 54
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=22.10 E-value=32 Score=26.71 Aligned_cols=16 Identities=6% Similarity=-0.151 Sum_probs=13.3
Q ss_pred cEEEEEEEEcCCceEE
Q 023616 237 LFIHGGYYDLLNCTFE 252 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~ 252 (280)
...|||.||+.||...
T Consensus 66 Cp~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 66 SPLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCCEEEcCCCCcc
Confidence 3479999999999764
No 55
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=21.91 E-value=29 Score=26.50 Aligned_cols=15 Identities=20% Similarity=0.005 Sum_probs=13.0
Q ss_pred cEEEEEEEEcCCceE
Q 023616 237 LFIHGGYYDLLNCTF 251 (280)
Q Consensus 237 L~I~G~~YDi~tG~v 251 (280)
...|||.||+.||.+
T Consensus 61 Cp~Hg~~Fdl~~G~~ 75 (98)
T cd03530 61 CPLHNWVIDLETGEA 75 (98)
T ss_pred CCCCCCEEECCCCCC
Confidence 458999999999965
No 56
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=21.52 E-value=55 Score=24.99 Aligned_cols=12 Identities=42% Similarity=0.767 Sum_probs=10.7
Q ss_pred eEEEeccCCchH
Q 023616 151 NILVIGHSDCGG 162 (280)
Q Consensus 151 ~IVV~GHs~CGa 162 (280)
.|+|+|..+||=
T Consensus 1 kI~V~G~~g~GK 12 (119)
T PF08477_consen 1 KIVVLGDSGVGK 12 (119)
T ss_dssp EEEEECSTTSSH
T ss_pred CEEEECcCCCCH
Confidence 489999999995
No 57
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=21.48 E-value=39 Score=26.92 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.0
Q ss_pred cEEEEEEEEcCCceEEE
Q 023616 237 LFIHGGYYDLLNCTFEK 253 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~~ 253 (280)
...|||.||+.||+...
T Consensus 66 Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 66 CPLHGARFDLRTGECLE 82 (106)
T ss_pred CCccCCEEEcCCCceec
Confidence 45899999999996544
No 58
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=21.44 E-value=54 Score=26.52 Aligned_cols=13 Identities=23% Similarity=0.687 Sum_probs=11.2
Q ss_pred eEEEeccCCchHH
Q 023616 151 NILVIGHSDCGGI 163 (280)
Q Consensus 151 ~IVV~GHs~CGaV 163 (280)
.|+|+|+.+||=-
T Consensus 2 ki~viG~~~~GKS 14 (172)
T cd01862 2 KVIILGDSGVGKT 14 (172)
T ss_pred EEEEECCCCCCHH
Confidence 5899999999943
No 59
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=21.09 E-value=48 Score=23.31 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=10.6
Q ss_pred EEEEEEcCCceEE
Q 023616 240 HGGYYDLLNCTFE 252 (280)
Q Consensus 240 ~G~~YDi~tG~v~ 252 (280)
-|.-||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 3789999999763
No 60
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=21.03 E-value=32 Score=27.34 Aligned_cols=16 Identities=6% Similarity=-0.072 Sum_probs=13.4
Q ss_pred cEEEEEEEEcCCceEE
Q 023616 237 LFIHGGYYDLLNCTFE 252 (280)
Q Consensus 237 L~I~G~~YDi~tG~v~ 252 (280)
...|||.||+.||+..
T Consensus 70 CP~H~~~Fdl~TG~~~ 85 (108)
T PRK09511 70 SPLKKQRFRLSDGLCM 85 (108)
T ss_pred CCCCCCEEECCCcccC
Confidence 4589999999999664
No 61
>PRK14430 acylphosphatase; Provisional
Probab=21.02 E-value=73 Score=24.79 Aligned_cols=20 Identities=20% Similarity=-0.014 Sum_probs=17.2
Q ss_pred CcEEEEEEEEcCCceEEEee
Q 023616 236 LLFIHGGYYDLLNCTFEKWT 255 (280)
Q Consensus 236 ~L~I~G~~YDi~tG~v~~l~ 255 (280)
++.|.||+.+..+|.|+.+.
T Consensus 29 ~lgl~G~VrN~~dGsVei~~ 48 (92)
T PRK14430 29 DLGLGGWVRNRADGTVEVMA 48 (92)
T ss_pred HhCCEEEEEECCCCcEEEEE
Confidence 56699999999999998765
No 62
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=20.87 E-value=40 Score=26.24 Aligned_cols=15 Identities=13% Similarity=-0.259 Sum_probs=12.9
Q ss_pred cEEEEEEEEcCCceE
Q 023616 237 LFIHGGYYDLLNCTF 251 (280)
Q Consensus 237 L~I~G~~YDi~tG~v 251 (280)
...|||.||+.||..
T Consensus 61 CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 61 CRAHLWQFDADTGEG 75 (108)
T ss_pred eCCcCCEEECCCccc
Confidence 458999999999964
No 63
>PRK14445 acylphosphatase; Provisional
Probab=20.82 E-value=94 Score=24.00 Aligned_cols=20 Identities=25% Similarity=0.084 Sum_probs=17.3
Q ss_pred CcEEEEEEEEcCCceEEEee
Q 023616 236 LLFIHGGYYDLLNCTFEKWT 255 (280)
Q Consensus 236 ~L~I~G~~YDi~tG~v~~l~ 255 (280)
++.|.||+.+..+|.|+...
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~ 48 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEA 48 (91)
T ss_pred hCCCEEEEEECCCCeEEEEE
Confidence 57799999999999988754
No 64
>PRK14423 acylphosphatase; Provisional
Probab=20.81 E-value=88 Score=24.26 Aligned_cols=20 Identities=20% Similarity=0.001 Sum_probs=17.5
Q ss_pred CcEEEEEEEEcCCceEEEee
Q 023616 236 LLFIHGGYYDLLNCTFEKWT 255 (280)
Q Consensus 236 ~L~I~G~~YDi~tG~v~~l~ 255 (280)
++.|.||+.++.+|.|+.+.
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~ 49 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVF 49 (92)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 57799999999999988765
No 65
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=20.75 E-value=79 Score=30.26 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=22.7
Q ss_pred chHHHHHHHHHh----cCcceEEEeccC-CchHHHHHhhh
Q 023616 135 ETNAALEFAVNT----LEVQNILVIGHS-DCGGIQALMRM 169 (280)
Q Consensus 135 ~v~aSLEYAV~~----L~V~~IVV~GHs-~CGaV~Aal~~ 169 (280)
++...|+|=... .+-+.||+|||| +|--|-.-+..
T Consensus 89 eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~ 128 (303)
T PF08538_consen 89 EIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSS 128 (303)
T ss_dssp HHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhc
Confidence 466888888887 478999999996 67665544443
No 66
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=20.73 E-value=79 Score=27.04 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=26.4
Q ss_pred CchHHHHHHHHHh--cCcceEEEeccCCchHHHHHhh
Q 023616 134 SETNAALEFAVNT--LEVQNILVIGHSDCGGIQALMR 168 (280)
Q Consensus 134 ~~v~aSLEYAV~~--L~V~~IVV~GHs~CGaV~Aal~ 168 (280)
.|+..+++|.+.. ..-+.|.|+|||.=|.+..++.
T Consensus 46 ~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~ 82 (213)
T PF00326_consen 46 DDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAA 82 (213)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHH
T ss_pred hhHHHHHHHHhccccccceeEEEEcccccccccchhh
Confidence 4678999999888 4558999999976665554333
No 67
>PRK13946 shikimate kinase; Provisional
Probab=20.61 E-value=76 Score=27.10 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=20.7
Q ss_pred HHHHHhcCcceEEEeccCCchHHHH
Q 023616 141 EFAVNTLEVQNILVIGHSDCGGIQA 165 (280)
Q Consensus 141 EYAV~~L~V~~IVV~GHs~CGaV~A 165 (280)
|-|+-.|.-+.|+|+|..+||.-.-
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKsti 26 (184)
T PRK13946 2 ERARAALGKRTVVLVGLMGAGKSTV 26 (184)
T ss_pred cchhhccCCCeEEEECCCCCCHHHH
Confidence 3466778899999999999998664
No 68
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=20.26 E-value=1.7e+02 Score=24.22 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=25.4
Q ss_pred chHHHHHHHHHhcCcceEEEeccCCchHHHH
Q 023616 135 ETNAALEFAVNTLEVQNILVIGHSDCGGIQA 165 (280)
Q Consensus 135 ~v~aSLEYAV~~L~V~~IVV~GHs~CGaV~A 165 (280)
+....+...+..++.+.|+|+|||-=|.+..
T Consensus 64 ~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~ 94 (251)
T TIGR02427 64 DLADDVLALLDHLGIERAVFCGLSLGGLIAQ 94 (251)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCchHHHHH
Confidence 3456778888899999999999999887754
No 69
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=20.19 E-value=60 Score=26.30 Aligned_cols=16 Identities=25% Similarity=0.482 Sum_probs=12.9
Q ss_pred cceEEEeccCCchHHH
Q 023616 149 VQNILVIGHSDCGGIQ 164 (280)
Q Consensus 149 V~~IVV~GHs~CGaV~ 164 (280)
.-.|+|+|+++||=-.
T Consensus 7 ~~~v~v~G~~~~GKSs 22 (169)
T cd04114 7 LFKIVLIGNAGVGKTC 22 (169)
T ss_pred eeEEEEECCCCCCHHH
Confidence 3579999999999644
No 70
>PF08472 S6PP_C: Sucrose-6-phosphate phosphohydrolase C-terminal; InterPro: IPR013679 This is the Sucrose-6-phosphate phosphohydrolase (S6PP or SPP) C-terminal domain [] as found in plant sucrose phosphatases. These enzymes irreversibly catalyse the last step in sucrose synthesis following the formation of Sucrose-6-Phosphate via sucrose-phosphate synthase (SPS). ; GO: 0000287 magnesium ion binding, 0050307 sucrose-phosphate phosphatase activity, 0005986 sucrose biosynthetic process
Probab=20.14 E-value=92 Score=26.34 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=36.8
Q ss_pred HHHHhHhcccccChHHHHHhhccCCCC---CCCCchHHHHHHHHHhcC
Q 023616 104 RFLSFKKNKYFEELEHFQNLAKAQSPK---NGPSETNAALEFAVNTLE 148 (280)
Q Consensus 104 Gn~rF~~~~~~~~~~~f~~La~GQ~P~---~~p~~v~aSLEYAV~~L~ 148 (280)
=+.+|..+..+....+|+.|....+|. +.|.++.-+|--+|..|.
T Consensus 32 f~EkWrrgEVe~se~~~~~LK~~~~~~g~~vhPsGvE~slh~~Id~Lr 79 (133)
T PF08472_consen 32 FYEKWRRGEVENSEEYFQRLKSVCHPNGTFVHPSGVEKSLHDSIDALR 79 (133)
T ss_pred hhhHHhhcccCCcHHHHHHhhhhhccCcCEEccccccccHHHHHHHHH
Confidence 467899998888888999999999998 577888777777777653
No 71
>PRK07581 hypothetical protein; Validated
Probab=20.02 E-value=97 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=20.3
Q ss_pred HhcCcceE-EEeccCCchHHHHHhhh
Q 023616 145 NTLEVQNI-LVIGHSDCGGIQALMRM 169 (280)
Q Consensus 145 ~~L~V~~I-VV~GHs~CGaV~Aal~~ 169 (280)
.+|+++.+ +|+|||-.|.|...+..
T Consensus 118 ~~lgi~~~~~lvG~S~GG~va~~~a~ 143 (339)
T PRK07581 118 EKFGIERLALVVGWSMGAQQTYHWAV 143 (339)
T ss_pred HHhCCCceEEEEEeCHHHHHHHHHHH
Confidence 57999995 79999999998865443
Done!