Citrus Sinensis ID: 023617
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 280 | ||||||
| 255570858 | 405 | conserved hypothetical protein [Ricinus | 0.95 | 0.656 | 0.765 | 1e-122 | |
| 225434550 | 392 | PREDICTED: uncharacterized protein LOC10 | 0.964 | 0.688 | 0.749 | 1e-119 | |
| 224105945 | 394 | predicted protein [Populus trichocarpa] | 0.975 | 0.692 | 0.738 | 1e-115 | |
| 449455019 | 390 | PREDICTED: uncharacterized protein LOC10 | 0.953 | 0.684 | 0.694 | 1e-114 | |
| 356541751 | 388 | PREDICTED: uncharacterized protein LOC10 | 0.903 | 0.652 | 0.716 | 1e-113 | |
| 356566070 | 388 | PREDICTED: uncharacterized protein LOC10 | 0.907 | 0.654 | 0.709 | 1e-113 | |
| 356553086 | 359 | PREDICTED: uncharacterized protein LOC10 | 0.867 | 0.676 | 0.731 | 1e-110 | |
| 224055329 | 339 | predicted protein [Populus trichocarpa] | 0.828 | 0.684 | 0.763 | 1e-109 | |
| 449526756 | 345 | PREDICTED: uncharacterized LOC101217703 | 0.828 | 0.672 | 0.737 | 1e-105 | |
| 357490845 | 401 | hypothetical protein MTR_5g071350 [Medic | 0.846 | 0.591 | 0.723 | 1e-105 |
| >gi|255570858|ref|XP_002526381.1| conserved hypothetical protein [Ricinus communis] gi|223534292|gb|EEF36005.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 206/269 (76%), Positives = 234/269 (86%), Gaps = 3/269 (1%)
Query: 13 LTILCLVLV-KPHTVSSAVIMGLRNHHNNHNHHRRPMLQANQSTCALFVGTWVRDDTYPM 71
L I CLVL+ + +SA+IM +RNHH HN +RRPMLQANQSTCALFVGTWV+DDTYP+
Sbjct: 27 LAIFCLVLLLETQIATSALIMSMRNHHKKHN-NRRPMLQANQSTCALFVGTWVKDDTYPL 85
Query: 72 YQSPECPIIDSEFNCQMNGRPDSDYLKYRWQPLNCQLPRFNGLEFLVKMKGKTVMFVGDS 131
YQS CP+ID +FNCQM GRPDSDYLKYRWQPLNC+LPRFNG+EFL+KMKGKTVMFVGDS
Sbjct: 86 YQSSHCPVIDPQFNCQMYGRPDSDYLKYRWQPLNCELPRFNGVEFLLKMKGKTVMFVGDS 145
Query: 132 LGLNQWESLICMIHAAAPRT-RTHMTRGDPLSTFKFLDYGISVSFYRAPYLVDIDVVHGK 190
LG NQWESLIC+I A P T T M+RGDP S FKFLDYG+S+++Y+APYLVDIDVV GK
Sbjct: 146 LGRNQWESLICLILATVPSTAATQMSRGDPFSIFKFLDYGVSIAYYKAPYLVDIDVVQGK 205
Query: 191 RVLKLEDISGNGKSWLNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKG 250
R+LKLEDISGN +W +ADVL FNTGHWW+H+GSLQGWDYMES GTYYQDMDRLVALEK
Sbjct: 206 RILKLEDISGNANAWRHADVLLFNTGHWWNHQGSLQGWDYMESGGTYYQDMDRLVALEKA 265
Query: 251 LRTWANWVDNNIDRSKTRVFFQSISPTHY 279
LRTWANW+D+NID S T +FFQSISPTHY
Sbjct: 266 LRTWANWIDSNIDTSATTLFFQSISPTHY 294
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225434550|ref|XP_002277229.1| PREDICTED: uncharacterized protein LOC100263882 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224105945|ref|XP_002313988.1| predicted protein [Populus trichocarpa] gi|222850396|gb|EEE87943.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449455019|ref|XP_004145251.1| PREDICTED: uncharacterized protein LOC101208082 [Cucumis sativus] gi|449470704|ref|XP_004153056.1| PREDICTED: uncharacterized protein LOC101217703 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|356541751|ref|XP_003539337.1| PREDICTED: uncharacterized protein LOC100813612 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356566070|ref|XP_003551258.1| PREDICTED: uncharacterized protein LOC100818177 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356553086|ref|XP_003544889.1| PREDICTED: uncharacterized protein LOC100795193 [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224055329|ref|XP_002298483.1| predicted protein [Populus trichocarpa] gi|222845741|gb|EEE83288.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449526756|ref|XP_004170379.1| PREDICTED: uncharacterized LOC101217703 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357490845|ref|XP_003615710.1| hypothetical protein MTR_5g071350 [Medicago truncatula] gi|355517045|gb|AES98668.1| hypothetical protein MTR_5g071350 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 280 | ||||||
| TAIR|locus:2178813 | 402 | PMR5 "AT5G58600" [Arabidopsis | 0.975 | 0.679 | 0.617 | 2.6e-95 | |
| TAIR|locus:2045688 | 398 | TBL45 "AT2G30010" [Arabidopsis | 0.814 | 0.572 | 0.649 | 3.9e-83 | |
| TAIR|locus:2029959 | 380 | TBL38 "AT1G29050" [Arabidopsis | 0.992 | 0.731 | 0.489 | 2.1e-70 | |
| TAIR|locus:2099402 | 356 | TBL41 "TRICHOME BIREFRINGENCE- | 0.828 | 0.651 | 0.523 | 5.8e-66 | |
| TAIR|locus:2055425 | 385 | TBL37 "AT2G34070" [Arabidopsis | 0.975 | 0.709 | 0.487 | 5.8e-66 | |
| TAIR|locus:2041574 | 367 | TBL39 "AT2G42570" [Arabidopsis | 0.8 | 0.610 | 0.524 | 1.5e-65 | |
| TAIR|locus:2055878 | 364 | AT2G31110 "AT2G31110" [Arabido | 0.796 | 0.612 | 0.508 | 5.2e-65 | |
| TAIR|locus:2037498 | 359 | TBL42 "TRICHOME BIREFRINGENCE- | 0.796 | 0.621 | 0.469 | 2.8e-57 | |
| TAIR|locus:2080280 | 379 | TBL36 "AT3G54260" [Arabidopsis | 0.807 | 0.596 | 0.456 | 1.4e-55 | |
| TAIR|locus:2155874 | 457 | TBL4 "AT5G49340" [Arabidopsis | 0.810 | 0.496 | 0.406 | 4.1e-49 |
| TAIR|locus:2178813 PMR5 "AT5G58600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
Identities = 176/285 (61%), Positives = 219/285 (76%)
Query: 6 LKLLG-SFLT-ILCLVLVKPHTVSSAVIMGLXXXXXXXX-------XXXXPM--LQANQS 54
L LLG S ++ I LVL +P SSA+I+ L P Q N+S
Sbjct: 5 LPLLGISVVSAIFFLVLQQPEQSSSAIILSLKKRHGSSSGSSGNQYSSSRPSAGFQGNRS 64
Query: 55 TCALFVGTWVRDDTYPMYQSPECP-IIDSEFNCQMNGRPDSDYLKYRWQPLNCQLPRFNG 113
TC+LF+GTWVRD++YP+Y+ +CP +++ EF+CQM GRPDSDYLKYRWQP NC LP FNG
Sbjct: 65 TCSLFLGTWVRDNSYPLYKPADCPGVVEPEFDCQMYGRPDSDYLKYRWQPQNCNLPTFNG 124
Query: 114 LEFLVKMKGKTVMFVGDSLGLNQWESLICMIHAAAPRTRTHMTRGDPLSTFKFLDYGISV 173
+FL+KMKGKT+MF GDSLG NQWESLIC+I ++AP TRT MTRG PLSTF+FLDYGI++
Sbjct: 125 AQFLLKMKGKTIMFAGDSLGKNQWESLICLIVSSAPSTRTEMTRGLPLSTFRFLDYGITM 184
Query: 174 SFYRAPYLVDIDVVHGKRVLKLEDISGNGKSWLNADVLSFNTGHWWSHEGSLQGWDYMES 233
SFY+AP+LVDID V GKRVLKL++ISGN +W +AD+L FNTGHWWSH GS+QGWD ++S
Sbjct: 185 SFYKAPFLVDIDAVQGKRVLKLDEISGNANAWHDADLLIFNTGHWWSHTGSMQGWDLIQS 244
Query: 234 MGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTH 278
+YYQDMDR VA+EK LRTWA WV+ ++DRS+T+V F SISPTH
Sbjct: 245 GNSYYQDMDRFVAMEKALRTWAYWVETHVDRSRTQVLFLSISPTH 289
|
|
| TAIR|locus:2045688 TBL45 "AT2G30010" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2029959 TBL38 "AT1G29050" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2099402 TBL41 "TRICHOME BIREFRINGENCE-LIKE 41" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2055425 TBL37 "AT2G34070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2041574 TBL39 "AT2G42570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2055878 AT2G31110 "AT2G31110" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2037498 TBL42 "TRICHOME BIREFRINGENCE-LIKE 42" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2080280 TBL36 "AT3G54260" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2155874 TBL4 "AT5G49340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 280 | |||
| PLN02629 | 387 | PLN02629, PLN02629, powdery mildew resistance 5 | 0.0 | |
| pfam13839 | 270 | pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Estera | 7e-69 | |
| pfam14416 | 55 | pfam14416, PMR5N, PMR5 N terminal Domain | 1e-25 |
| >gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5 | Back alignment and domain information |
|---|
Score = 512 bits (1321), Expect = 0.0
Identities = 213/276 (77%), Positives = 241/276 (87%), Gaps = 2/276 (0%)
Query: 5 FLKLLGSFLTILCLVLVKPHTVSSAVIMGLRNHHNNHNHHRRPMLQANQSTCALFVGTWV 64
L L F + LVL++P SSA+I+ L+NHHN+H +RRP LQANQSTCALFVGTWV
Sbjct: 3 CLLLGSCFSFLFFLVLLQPEIASSALILSLKNHHNHH-SNRRPSLQANQSTCALFVGTWV 61
Query: 65 RDDTYPMYQSPECP-IIDSEFNCQMNGRPDSDYLKYRWQPLNCQLPRFNGLEFLVKMKGK 123
RDD+YP+YQS +CP +ID EFNCQM GRPDSDYLKYRWQPLNC+LPRFNGLEFL+KMKGK
Sbjct: 62 RDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGK 121
Query: 124 TVMFVGDSLGLNQWESLICMIHAAAPRTRTHMTRGDPLSTFKFLDYGISVSFYRAPYLVD 183
TVMFVGDSLG NQWESLIC+I ++ P TRT M+RGDPLSTFKFLDYG+S+SFY+APYLVD
Sbjct: 122 TVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYGVSISFYKAPYLVD 181
Query: 184 IDVVHGKRVLKLEDISGNGKSWLNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDR 243
ID V GKRVLKLE+ISGN +W +ADVL FNTGHWWSH+GSLQGWDY+ES GTYYQDMDR
Sbjct: 182 IDAVQGKRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDR 241
Query: 244 LVALEKGLRTWANWVDNNIDRSKTRVFFQSISPTHY 279
LVALEK LRTWA WVD N+DRS+TRVFFQSISPTHY
Sbjct: 242 LVALEKALRTWAYWVDTNVDRSRTRVFFQSISPTHY 277
|
Length = 387 |
| >gnl|CDD|222410 pfam13839, PC-Esterase, GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| PLN02629 | 387 | powdery mildew resistance 5 | 100.0 | |
| PF13839 | 263 | PC-Esterase: GDSL/SGNH-like Acyl-Esterase family f | 99.97 | |
| PF14416 | 55 | PMR5N: PMR5 N terminal Domain | 99.95 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 97.92 | |
| cd01829 | 200 | SGNH_hydrolase_peri2 SGNH_peri2; putative periplas | 92.05 | |
| COG2845 | 354 | Uncharacterized protein conserved in bacteria [Fun | 84.52 |
| >PLN02629 powdery mildew resistance 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-89 Score=654.50 Aligned_cols=268 Identities=79% Similarity=1.396 Sum_probs=250.9
Q ss_pred HHHHHHHhhccccccccceeeeeccccCCCCCCCCccccCCCCCCCccccceeeCCCCCCCCCCCCC-CcCCCcccccCC
Q 023617 12 FLTILCLVLVKPHTVSSAVIMGLRNHHNNHNHHRRPMLQANQSTCALFVGTWVRDDTYPMYQSPECP-IIDSEFNCQMNG 90 (280)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Cd~~~G~WV~D~~~PlY~~~sCp-~i~~~~nC~~nG 90 (280)
|..|++|++++.+.++||.|+.++.++..+.. ..+..+.+.++||+|+|+||+|+++|+|++++|| ||+++|||++||
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knG 88 (387)
T PLN02629 10 FSFLFFLVLLQPEIASSALILSLKNHHNHHSN-RRPSLQANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYG 88 (387)
T ss_pred HHHHHHHhhhccchhhhhhhhhhhcccccccC-CCCCCCCCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcC
Confidence 33345888899999999999999999776544 4556788899999999999999999999999999 999999999999
Q ss_pred CCCCcccccccccCccCCCCCChHHHHHHhcCCcEEEEeccchhHHHHHHHHhhcccCCCCeeeeeeCCCceEEEEeecC
Q 023617 91 RPDSDYLKYRWQPLNCQLPRFNGLEFLVKMKGKTVMFVGDSLGLNQWESLICMIHAAAPRTRTHMTRGDPLSTFKFLDYG 170 (280)
Q Consensus 91 RpD~~y~~wrWqP~~C~l~~fd~~~~l~~lrgk~i~FvGDSl~R~~~~sl~clL~~~~~~~~~~~~~~~~~~~~~f~~~n 170 (280)
|||++|++|||||++|+||||||.+||+.||||+||||||||+|||||||+|||++++|+.++.+.++++.++|+|++||
T Consensus 89 RPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl~FVGDSL~RNQ~eSLvClL~~~~p~~~~~~~~~~~~~~~~F~~yN 168 (387)
T PLN02629 89 RPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTVMFVGDSLGRNQWESLICLISSSVPSTRTQMSRGDPLSTFKFLDYG 168 (387)
T ss_pred CCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeEEEeccccchhHHHHHHHHhhccCCCCceeeecCCceEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999999998776666677788999999999
Q ss_pred eEEEEEEccceeecccccceeeEEeccCCcccCCCCCccEEEEcCccccccCCcccceeeeecCceeeccCCHHHHHHHH
Q 023617 171 ISVSFYRAPYLVDIDVVHGKRVLKLEDISGNGKSWLNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKG 250 (280)
Q Consensus 171 ~Tv~f~WsPfLv~~~~~~~~~~L~lD~~d~~a~~w~~~DvLV~ntGhWw~~~~~~~~~~y~~~g~~~~~~~~~~~Ay~~a 250 (280)
+||+||||||||+.+..++.++|+||+++++++.|+++|||||||||||.+++..++|+|++.|+.++++|++.+||++|
T Consensus 169 ~TV~~ywspfLV~~~~~~~~~~l~LD~id~~a~~w~~~DvlVfntghWw~~~~~~~~~~~~~~g~~~~~~~~~~~A~r~a 248 (387)
T PLN02629 169 VSISFYKAPYLVDIDAVQGKRVLKLEEISGNANAWRDADVLIFNTGHWWSHQGSLQGWDYIESGGTYYQDMDRLVALEKA 248 (387)
T ss_pred EEEEEEecceEEeeecCCCceeEEecCcchhhhhhccCCEEEEeCccccCCCCeeEEeeeeccCCccccCccHHHHHHHH
Confidence 99999999999998877777899999999888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCceEEEEecCCCCCC
Q 023617 251 LRTWANWVDNNIDRSKTRVFFQSISPTHYK 280 (280)
Q Consensus 251 L~t~~~wv~~~~~~~k~~vffRT~SP~Hfe 280 (280)
|+||++||++++++.|++|||||+||+|||
T Consensus 249 l~T~~~wv~~~~~~~kt~vffrT~SP~Hfe 278 (387)
T PLN02629 249 LRTWAYWVDTNVDRSRTRVFFQSISPTHYN 278 (387)
T ss_pred HHHHHHHHHhcCCCCCcEEEEEecCccccc
Confidence 999999999999999999999999999997
|
|
| >PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | Back alignment and domain information |
|---|
| >PF14416 PMR5N: PMR5 N terminal Domain | Back alignment and domain information |
|---|
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
| >cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases | Back alignment and domain information |
|---|
| >COG2845 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 280 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-06 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-08
Identities = 42/272 (15%), Positives = 80/272 (29%), Gaps = 90/272 (33%)
Query: 36 NHHNNH--------NHHRRPMLQANQSTCALFVGTW----VRDDTYPMYQSPECPIIDSE 83
+HH++H + + +L + FV + V+D + E I
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDA---FVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 84 FNCQMNGRPDSDYLKYRWQPLNCQLPRFNGLEFLVKMKGKTV--MFVGDSLGLN-QWESL 140
D+ R L + + K + + FV + L +N ++ L
Sbjct: 58 --------KDAVSGTLR-------------LFWTLLSKQEEMVQKFVEEVLRINYKF--L 94
Query: 141 ICMIH----AAAPRTRTHMTRGDPL--STFKFLDYGIS------------VSFYRAPYLV 182
+ I + TR ++ + D L F Y +S + A ++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 183 DIDVVHGKRVLKLEDISGNGKSWLNADVLS-------FNTGHWWSHEGSLQGWDYMESMG 235
+ G G+GK+W+ DV + +W ++
Sbjct: 155 ----IDGV--------LGSGKTWVALDVCLSYKVQCKMDFKIFWL------------NLK 190
Query: 236 TYYQDMDRLVALEKGLRTWANWVDNNIDRSKT 267
L L+K L + D S
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| 4h08_A | 200 | Putative hydrolase; GDSL-like lipase/acylhydrolase | 91.44 |
| >4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=91.44 E-value=0.27 Score=40.44 Aligned_cols=50 Identities=16% Similarity=0.256 Sum_probs=35.5
Q ss_pred CCccEEEEcCccccccCCcccceeeeecCceeeccCCHHHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCC
Q 023617 206 LNADVLSFNTGHWWSHEGSLQGWDYMESMGTYYQDMDRLVALEKGLRTWANWVDNNIDRSKTRVFFQSISPT 277 (280)
Q Consensus 206 ~~~DvLV~ntGhWw~~~~~~~~~~y~~~g~~~~~~~~~~~Ay~~aL~t~~~wv~~~~~~~k~~vffRT~SP~ 277 (280)
..+|+||++.|..=.. ...+.|+..|+++++.+.+. .++.++++-|..|.
T Consensus 73 ~~pd~Vvi~~G~ND~~--------------------~~~~~~~~~l~~ii~~l~~~--~p~~~ii~~~~~P~ 122 (200)
T 4h08_A 73 TKFDVIHFNNGLHGFD--------------------YTEEEYDKSFPKLIKIIRKY--APKAKLIWANTTPV 122 (200)
T ss_dssp SCCSEEEECCCSSCTT--------------------SCHHHHHHHHHHHHHHHHHH--CTTCEEEEECCCCC
T ss_pred CCCCeEEEEeeeCCCC--------------------CCHHHHHHHHHHHHHHHhhh--CCCccEEEeccCCC
Confidence 4689999999964210 12457889999998887653 35578888888774
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| d3bzwa1 | 248 | Uncharacterized protein BT2961 {Bacteroides thetai | 85.29 | |
| d3dc7a1 | 207 | Uncharacterized protein Lp3323 {Lactobacillus plan | 81.89 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 80.02 |
| >d3bzwa1 c.23.10.9 (A:38-285) Uncharacterized protein BT2961 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: SGNH hydrolase family: BT2961-like domain: Uncharacterized protein BT2961 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=85.29 E-value=0.15 Score=39.02 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=13.0
Q ss_pred cCCcEEEEeccchhH
Q 023617 121 KGKTVMFVGDSLGLN 135 (280)
Q Consensus 121 rgk~i~FvGDSl~R~ 135 (280)
.||+|+|+|||++-.
T Consensus 7 ~~kkI~~~GDS~T~g 21 (248)
T d3bzwa1 7 QGKKVGYIGDSITDP 21 (248)
T ss_dssp TTCEEEEEESTTTCT
T ss_pred CCCEEEEEehHHccC
Confidence 599999999998753
|
| >d3dc7a1 c.23.10.9 (A:18-224) Uncharacterized protein Lp3323 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
|---|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|