Query 023619
Match_columns 280
No_of_seqs 91 out of 93
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 05:24:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023619.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023619hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3390 General control of ami 100.0 1.4E-43 3E-48 290.4 14.9 118 163-280 1-118 (120)
2 PF06320 GCN5L1: GCN5-like pro 100.0 4.3E-40 9.3E-45 269.1 15.5 114 167-280 1-114 (121)
3 PF10158 LOH1CR12: Tumour supp 90.2 11 0.00023 32.1 12.7 88 191-278 27-114 (131)
4 cd00176 SPEC Spectrin repeats, 89.1 10 0.00022 30.2 13.0 100 160-268 31-130 (213)
5 PF10454 DUF2458: Protein of u 85.3 7.9 0.00017 33.5 9.0 91 160-254 25-118 (150)
6 PF09763 Sec3_C: Exocyst compl 81.4 8.9 0.00019 39.3 9.0 65 215-279 7-72 (701)
7 KOG2391 Vacuolar sorting prote 81.3 17 0.00037 36.2 10.5 40 201-240 234-273 (365)
8 COG1322 Predicted nuclease of 80.5 69 0.0015 32.4 15.7 115 160-276 71-189 (448)
9 PF13166 AAA_13: AAA domain 80.2 43 0.00093 33.7 13.1 95 160-254 371-472 (712)
10 TIGR03752 conj_TIGR03752 integ 76.1 63 0.0014 33.2 13.0 73 161-238 61-134 (472)
11 PF09903 DUF2130: Uncharacteri 74.3 78 0.0017 29.7 12.8 93 163-256 160-252 (267)
12 KOG3156 Uncharacterized membra 73.0 66 0.0014 30.3 11.3 41 208-248 169-209 (220)
13 PF04799 Fzo_mitofusin: fzo-li 72.6 18 0.0004 32.5 7.4 48 211-258 118-165 (171)
14 KOG2148 Exocyst protein Sec3 [ 72.3 38 0.00082 36.8 10.7 79 200-278 180-259 (867)
15 PF06785 UPF0242: Uncharacteri 68.1 66 0.0014 32.4 10.8 80 166-250 92-171 (401)
16 cd07666 BAR_SNX7 The Bin/Amphi 67.3 1.1E+02 0.0024 28.6 14.7 74 194-270 145-218 (243)
17 PF14662 CCDC155: Coiled-coil 65.7 78 0.0017 29.2 10.0 63 202-264 4-66 (193)
18 PRK10361 DNA recombination pro 65.5 1.7E+02 0.0037 30.1 15.5 44 223-268 168-214 (475)
19 PF04912 Dynamitin: Dynamitin 65.3 37 0.0008 32.6 8.3 59 209-267 325-384 (388)
20 PF06103 DUF948: Bacterial pro 62.1 66 0.0014 24.5 7.7 55 201-255 28-82 (90)
21 PF02994 Transposase_22: L1 tr 61.1 9.8 0.00021 36.8 3.7 19 252-270 152-170 (370)
22 cd07665 BAR_SNX1 The Bin/Amphi 59.2 51 0.0011 30.5 7.8 58 218-275 34-112 (234)
23 PRK04863 mukB cell division pr 56.9 1.6E+02 0.0034 34.2 12.5 95 158-253 516-618 (1486)
24 PF06428 Sec2p: GDP/GTP exchan 56.4 1E+02 0.0023 25.3 8.4 72 175-253 6-77 (100)
25 cd07664 BAR_SNX2 The Bin/Amphi 56.1 60 0.0013 29.8 7.7 58 218-275 34-112 (234)
26 PF06120 Phage_HK97_TLTM: Tail 55.6 2E+02 0.0044 27.9 13.1 78 180-257 41-118 (301)
27 PF09177 Syntaxin-6_N: Syntaxi 55.5 45 0.00098 26.1 5.9 57 223-279 8-67 (97)
28 KOG0982 Centrosomal protein Nu 54.0 2.3E+02 0.005 29.5 12.0 70 181-250 279-348 (502)
29 COG4842 Uncharacterized protei 53.3 98 0.0021 24.5 7.6 50 208-257 23-77 (97)
30 PF03938 OmpH: Outer membrane 51.9 1.2E+02 0.0027 24.6 8.2 40 216-255 83-127 (158)
31 KOG4514 Uncharacterized conser 51.8 2.1E+02 0.0046 26.9 12.7 17 117-133 89-105 (222)
32 PF09325 Vps5: Vps5 C terminal 50.4 1.2E+02 0.0026 26.1 8.2 75 201-275 33-114 (236)
33 KOG0161 Myosin class II heavy 50.0 5.4E+02 0.012 31.1 15.7 96 156-253 1014-1109(1930)
34 cd07598 BAR_FAM92 The Bin/Amph 48.7 1.6E+02 0.0035 26.7 9.1 58 215-274 13-70 (211)
35 PF09403 FadA: Adhesion protei 47.2 1.8E+02 0.0039 24.8 9.3 60 157-228 22-81 (126)
36 KOG3088 Secretory carrier memb 46.7 46 0.001 32.6 5.7 23 165-187 56-78 (313)
37 PF05700 BCAS2: Breast carcino 46.7 2.2E+02 0.0047 25.6 9.6 39 231-269 176-214 (221)
38 cd07623 BAR_SNX1_2 The Bin/Amp 46.5 99 0.0021 27.6 7.4 71 205-275 25-102 (224)
39 PF04163 Tht1: Tht1-like nucle 46.4 3.7E+02 0.008 28.1 15.3 43 223-271 381-424 (544)
40 PF07889 DUF1664: Protein of u 45.7 1.9E+02 0.0042 24.7 9.5 44 210-253 79-122 (126)
41 smart00150 SPEC Spectrin repea 44.8 1.1E+02 0.0024 21.6 8.3 71 159-241 28-98 (101)
42 cd07628 BAR_Atg24p The Bin/Amp 42.6 2.3E+02 0.005 24.7 8.9 41 214-254 26-67 (185)
43 TIGR03007 pepcterm_ChnLen poly 42.3 3.3E+02 0.0072 26.4 10.8 60 216-275 313-372 (498)
44 cd00890 Prefoldin Prefoldin is 41.7 82 0.0018 24.7 5.5 41 217-257 3-43 (129)
45 PF08397 IMD: IRSp53/MIM homol 41.6 2.5E+02 0.0053 24.9 9.0 34 231-264 66-101 (219)
46 PF09753 Use1: Membrane fusion 41.0 2.8E+02 0.006 25.1 10.6 72 158-229 148-222 (251)
47 TIGR02780 TrbJ_Ti P-type conju 40.6 2.5E+02 0.0055 25.6 9.2 67 213-279 43-113 (246)
48 PF10392 COG5: Golgi transport 40.5 2.1E+02 0.0045 23.6 13.1 95 156-250 27-123 (132)
49 PRK06835 DNA replication prote 40.5 2.4E+02 0.0053 26.9 9.4 77 163-239 5-84 (329)
50 PF08654 DASH_Dad2: DASH compl 40.1 1.6E+02 0.0036 24.2 7.2 57 186-253 12-68 (103)
51 PF11945 WASH_WAHD: WAHD domai 39.7 1.6E+02 0.0035 28.3 8.0 56 178-233 15-70 (297)
52 KOG0994 Extracellular matrix g 38.7 4.8E+02 0.01 30.8 12.3 78 189-266 1665-1746(1758)
53 PRK13922 rod shape-determining 38.0 3.1E+02 0.0067 24.8 9.6 65 187-253 44-108 (276)
54 cd07627 BAR_Vps5p The Bin/Amph 37.5 2.9E+02 0.0063 24.4 10.4 76 201-276 13-95 (216)
55 PRK14160 heat shock protein Gr 37.1 3.4E+02 0.0074 25.1 13.8 66 208-275 87-153 (211)
56 PF02969 TAF: TATA box binding 34.5 79 0.0017 24.2 4.2 56 194-251 10-66 (66)
57 PF12010 DUF3502: Domain of un 34.2 1.5E+02 0.0033 24.5 6.2 52 190-241 78-131 (134)
58 COG1842 PspA Phage shock prote 33.9 3.8E+02 0.0083 24.7 13.2 76 201-276 40-117 (225)
59 KOG1029 Endocytic adaptor prot 32.9 5.1E+02 0.011 29.3 11.2 95 162-257 479-579 (1118)
60 TIGR00996 Mtu_fam_mce virulenc 32.5 3.7E+02 0.0081 24.2 14.0 57 200-256 193-249 (291)
61 PF15358 TSKS: Testis-specific 32.1 3.9E+02 0.0086 28.0 9.8 61 209-279 149-209 (558)
62 cd07624 BAR_SNX7_30 The Bin/Am 31.2 1.8E+02 0.0038 25.6 6.4 53 204-256 26-78 (200)
63 PF04383 KilA-N: KilA-N domain 31.1 25 0.00055 27.6 1.1 35 44-84 65-99 (111)
64 PF10146 zf-C4H2: Zinc finger- 30.9 2.5E+02 0.0054 26.0 7.6 72 208-279 17-88 (230)
65 PF02646 RmuC: RmuC family; I 30.2 4.7E+02 0.01 24.6 10.9 64 203-269 17-83 (304)
66 PRK11637 AmiB activator; Provi 30.2 5.2E+02 0.011 25.1 11.4 20 217-236 93-112 (428)
67 PF04949 Transcrip_act: Transc 30.0 4.2E+02 0.0092 24.0 9.9 52 198-252 76-127 (159)
68 cd07630 BAR_SNX_like The Bin/A 29.8 3.5E+02 0.0076 24.2 8.2 75 202-276 14-97 (198)
69 PHA00448 hypothetical protein 29.7 2.9E+02 0.0062 22.1 6.6 38 206-243 10-48 (70)
70 PF04065 Not3: Not1 N-terminal 29.5 94 0.002 29.0 4.6 49 217-270 42-90 (233)
71 PF03114 BAR: BAR domain; Int 29.5 3.2E+02 0.0069 22.4 9.4 40 205-244 25-64 (229)
72 PF06103 DUF948: Bacterial pro 28.8 2.6E+02 0.0057 21.2 8.2 35 217-251 51-85 (90)
73 PF00957 Synaptobrevin: Synapt 28.8 2.6E+02 0.0056 21.2 8.0 40 200-239 15-57 (89)
74 PF04136 Sec34: Sec34-like fam 28.5 3.8E+02 0.0083 23.0 11.3 78 201-278 23-112 (157)
75 PF10046 BLOC1_2: Biogenesis o 28.5 3E+02 0.0066 21.9 10.7 14 256-269 85-98 (99)
76 PRK06975 bifunctional uroporph 28.4 7.1E+02 0.015 26.1 15.0 43 198-240 377-419 (656)
77 KOG0057 Mitochondrial Fe/S clu 27.9 2.9E+02 0.0063 29.5 8.2 57 195-251 212-269 (591)
78 cd07666 BAR_SNX7 The Bin/Amphi 27.4 4.2E+02 0.0091 24.8 8.5 65 201-265 63-128 (243)
79 PF10168 Nup88: Nuclear pore c 27.4 6.4E+02 0.014 27.1 10.7 48 205-252 599-650 (717)
80 PF06005 DUF904: Protein of un 27.4 3E+02 0.0064 21.4 10.3 67 198-270 3-69 (72)
81 cd01040 globin Globins are hem 27.1 2.8E+02 0.0062 21.1 7.7 103 160-263 23-133 (140)
82 PRK00846 hypothetical protein; 26.9 3.3E+02 0.0071 21.7 8.1 51 174-227 2-52 (77)
83 KOG2962 Prohibitin-related mem 26.5 4.3E+02 0.0093 25.9 8.5 50 173-231 198-247 (322)
84 PF00664 ABC_membrane: ABC tra 26.4 3.4E+02 0.0073 21.7 10.4 63 192-254 175-238 (275)
85 KOG3068 mRNA splicing factor [ 26.4 49 0.0011 31.8 2.3 52 84-137 91-150 (268)
86 PRK14162 heat shock protein Gr 26.4 5E+02 0.011 23.6 12.1 61 212-274 69-133 (194)
87 KOG0288 WD40 repeat protein Ti 26.0 7.7E+02 0.017 25.7 11.1 50 207-256 84-139 (459)
88 KOG0971 Microtubule-associated 25.9 9.9E+02 0.022 27.6 12.0 16 127-142 189-204 (1243)
89 cd00446 GrpE GrpE is the adeni 25.7 3.8E+02 0.0082 22.1 10.0 65 209-275 12-80 (137)
90 TIGR00161 conserved hypothetic 25.6 1.7E+02 0.0038 26.5 5.6 30 65-94 91-120 (238)
91 TIGR00219 mreC rod shape-deter 25.3 2.9E+02 0.0064 25.9 7.1 45 208-252 61-105 (283)
92 PF08654 DASH_Dad2: DASH compl 25.3 3.9E+02 0.0084 22.0 9.3 52 213-264 6-59 (103)
93 COG3452 Predicted periplasmic 25.1 1.5E+02 0.0032 29.1 5.3 43 177-219 39-81 (297)
94 KOG4715 SWI/SNF-related matrix 25.0 7.4E+02 0.016 25.2 10.2 54 197-253 219-272 (410)
95 cd00584 Prefoldin_alpha Prefol 24.8 2.2E+02 0.0048 22.8 5.5 41 218-258 4-44 (129)
96 PRK10778 dksA RNA polymerase-b 24.4 3.3E+02 0.0073 23.6 6.8 47 191-237 10-56 (151)
97 PF05667 DUF812: Protein of un 24.3 8.6E+02 0.019 25.7 11.8 70 193-263 521-590 (594)
98 PF14661 HAUS6_N: HAUS augmin- 24.1 5.5E+02 0.012 23.3 9.8 26 211-236 183-208 (247)
99 COG3096 MukB Uncharacterized p 24.1 1.1E+03 0.024 27.0 12.0 89 160-248 518-613 (1480)
100 PF05529 Bap31: B-cell recepto 24.0 4.7E+02 0.01 22.5 9.1 16 32-47 6-21 (192)
101 PRK14139 heat shock protein Gr 23.4 5.6E+02 0.012 23.2 9.3 63 209-273 59-123 (185)
102 PF14755 ER-remodelling: Intra 23.4 2.4E+02 0.0052 25.1 5.8 70 124-205 68-139 (148)
103 PF05478 Prominin: Prominin; 22.9 9.5E+02 0.021 25.7 12.0 70 184-253 210-279 (806)
104 PF00901 Orbi_VP5: Orbivirus o 22.9 3.8E+02 0.0083 28.1 7.9 47 181-227 59-105 (508)
105 PF07061 Swi5: Swi5; InterPro 22.8 2.9E+02 0.0063 21.9 5.7 47 207-254 8-55 (83)
106 PRK10803 tol-pal system protei 22.8 5.9E+02 0.013 23.5 8.5 60 162-233 43-102 (263)
107 PRK15422 septal ring assembly 22.6 4.2E+02 0.0092 21.5 8.2 65 198-264 3-70 (79)
108 PHA02926 zinc finger-like prot 22.6 53 0.0011 31.3 1.7 19 63-82 101-120 (242)
109 smart00503 SynN Syntaxin N-ter 22.1 3.6E+02 0.0078 20.5 6.9 61 198-258 42-110 (117)
110 PRK14139 heat shock protein Gr 21.8 3E+02 0.0065 24.8 6.2 13 254-266 60-72 (185)
111 COG4980 GvpP Gas vesicle prote 21.7 5.1E+02 0.011 22.1 9.5 52 184-235 61-112 (115)
112 cd07621 BAR_SNX5_6 The Bin/Amp 21.6 4.6E+02 0.01 24.2 7.5 54 204-257 36-90 (219)
113 PF11172 DUF2959: Protein of u 21.5 6.7E+02 0.015 23.4 14.4 116 154-275 56-187 (201)
114 cd00179 SynN Syntaxin N-termin 21.3 4.4E+02 0.0095 21.2 12.6 60 198-257 40-108 (151)
115 KOG0977 Nuclear envelope prote 21.1 9.2E+02 0.02 25.6 10.3 70 198-270 98-174 (546)
116 PF10046 BLOC1_2: Biogenesis o 21.1 4.3E+02 0.0093 21.0 9.7 70 200-272 25-94 (99)
117 cd07667 BAR_SNX30 The Bin/Amph 21.1 7E+02 0.015 23.5 11.0 76 160-274 144-219 (240)
118 PLN03223 Polycystin cation cha 21.0 9.4E+02 0.02 28.8 11.0 80 188-273 812-898 (1634)
119 cd07647 F-BAR_PSTPIP The F-BAR 20.9 6.1E+02 0.013 22.7 13.3 22 156-177 54-75 (239)
120 PRK09793 methyl-accepting prot 20.3 8.5E+02 0.018 24.1 13.3 76 202-277 306-383 (533)
121 PRK10361 DNA recombination pro 20.2 9.8E+02 0.021 24.8 13.8 93 181-275 103-196 (475)
No 1
>KOG3390 consensus General control of amino-acid synthesis 5-like 1 [Transcription]
Probab=100.00 E-value=1.4e-43 Score=290.44 Aligned_cols=118 Identities=52% Similarity=0.858 Sum_probs=116.5
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023619 163 SLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLAT 242 (280)
Q Consensus 163 mLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~l 242 (280)
||+.|+|||+.+|..+|+.+|+.|+|||.++..++++|||+||+||+++|.|||+||.|+|.|+.++++|+|||+||+.+
T Consensus 1 ml~~llKEhs~kq~eRrelqEK~r~EAI~aA~~l~~alVdhlN~gVaqay~Nqkrld~E~k~l~~~~A~faKQT~QWl~v 80 (120)
T KOG3390|consen 1 MLPFLLKEHSEKQSERRELQEKTRKEAIRAAARLADALVDHLNGGVAQAYVNQKRLDSEIKNLAITVAKFAKQTDQWLAV 80 (120)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023619 243 SHAINTAVKEIGDFENWMKTMDLDCKSINAAIRNIYQD 280 (280)
Q Consensus 243 vd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~v~~~ 280 (280)
++++|++||||||||||+++||+||+.|+++||++|++
T Consensus 81 te~~N~AlKEIGDvENW~ktiE~Dmk~It~alr~~ye~ 118 (120)
T KOG3390|consen 81 TEAVNSALKEIGDVENWMKTIEFDMKKITAALRNIYED 118 (120)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999975
No 2
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=100.00 E-value=4.3e-40 Score=269.06 Aligned_cols=114 Identities=39% Similarity=0.681 Sum_probs=112.4
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 023619 167 LIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAI 246 (280)
Q Consensus 167 IlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~f 246 (280)
|||+|+++|+.+|++++++|++|++|+.+++++|+|+||.||+++|.||++||+|+|+|+.++++|+|||.+|++++++|
T Consensus 1 ~~keH~~~q~~~re~~e~~r~ea~~s~~~l~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~ 80 (121)
T PF06320_consen 1 MVKEHQARQAELREEQERARKEAIASAQALTNALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSF 80 (121)
T ss_pred CcHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhccHHHHHHHHHHHHHHHHHHHHHHhcC
Q 023619 247 NTAVKEIGDFENWMKTMDLDCKSINAAIRNIYQD 280 (280)
Q Consensus 247 n~aLKEIGDVENWAk~IE~Dmk~IeeaLe~v~~~ 280 (280)
|++|||||||||||++||+||++|+++|++||+.
T Consensus 81 ~~~LKEiGDveNWa~~iE~Dl~~i~~~L~~v~~~ 114 (121)
T PF06320_consen 81 NDALKEIGDVENWAEMIERDLRVIEETLRYVYEG 114 (121)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999973
No 3
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=90.19 E-value=11 Score=32.14 Aligned_cols=88 Identities=11% Similarity=0.153 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Q 023619 191 RHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSI 270 (280)
Q Consensus 191 aSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~I 270 (280)
+..-+++..+-+|++.-+..+-..|..|.+.+|+.....+++..++.+=.+..+.+...|++|-++.+=...+..=+..+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~ 106 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQT 106 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567788888899999999999999999999999999999999999999999999999999887777777777777777
Q ss_pred HHHHHHHh
Q 023619 271 NAAIRNIY 278 (280)
Q Consensus 271 eeaLe~v~ 278 (280)
...|+.+.
T Consensus 107 v~~ie~LN 114 (131)
T PF10158_consen 107 VPSIETLN 114 (131)
T ss_pred HHHHHHHH
Confidence 77766654
No 4
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=89.06 E-value=10 Score=30.23 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=64.6
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQW 239 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QW 239 (280)
-...+..+++.|+.=+.... .++..+..+...++.|.+........+-.-...|+..-..|...+..-.++.++.
T Consensus 31 d~~~~~~~l~~~~~~~~e~~-----~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~ 105 (213)
T cd00176 31 DLESVEALLKKHEALEAELA-----AHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEA 105 (213)
T ss_pred CHHHHHHHHHHHHHHHHHHH-----HCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778888876554443 4667777888888888887654444444445555556566666666666555665
Q ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHH
Q 023619 240 LATSHAINTAVKEIGDFENWMKTMDLDCK 268 (280)
Q Consensus 240 l~lvd~fn~aLKEIGDVENWAk~IE~Dmk 268 (280)
......++...+ +++|....|..+.
T Consensus 106 ~~~~~~~~~~~~----l~~wl~~~e~~l~ 130 (213)
T cd00176 106 LDLQQFFRDADD----LEQWLEEKEAALA 130 (213)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHhc
Confidence 555566665554 8899888887543
No 5
>PF10454 DUF2458: Protein of unknown function (DUF2458); InterPro: IPR018858 This entry represents a family of uncharacterised proteins.
Probab=85.29 E-value=7.9 Score=33.53 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=58.4
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHH-HHHHHHHHHHHHHHHhH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTE--RAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIE-LEIRTLAATIAKFMKQT 236 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqE--kaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE-~EaKeL~~ttakfaKQT 236 (280)
..+-+..|+++|+..+.+..+.-+ .+|.++-.-...--+.+...++++|.+. .+-...+ ...++|..= =.|--
T Consensus 25 ~~~~Ir~Li~~Q~~~Er~w~~~Re~l~~k~~~r~e~~k~l~~~l~s~g~~i~~~-~~~~~~~~e~~~EL~~f---D~kV~ 100 (150)
T PF10454_consen 25 FLQRIRRLIKEQHDHERQWWEGREALIAKQKARAEKKKKLDEVLRSVGGGISDQ-SEVTTPEKEDEAELDKF---DEKVY 100 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-cccccccHHHHHHHHHH---HHHHH
Confidence 567788889888877666655544 3333333333333467777888888775 3333333 223333322 15667
Q ss_pred HHHHHHHHHHHHhhhhhc
Q 023619 237 DQWLATSHAINTAVKEIG 254 (280)
Q Consensus 237 ~QWl~lvd~fn~aLKEIG 254 (280)
..|..++...+..|+++|
T Consensus 101 ~a~~~m~~~~~~~L~~Lg 118 (150)
T PF10454_consen 101 KASKQMSKEQQAELKELG 118 (150)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 889999999999999997
No 6
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=81.36 E-value=8.9 Score=39.26 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHhc
Q 023619 215 EKRIELEIRTLA-ATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIRNIYQ 279 (280)
Q Consensus 215 QKrIE~EaKeL~-~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~v~~ 279 (280)
.++|..|...|. +++..+..--.+|..+.+.++.+++|+.+++.|-...+..|..+.+-|++|..
T Consensus 7 ~~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~ 72 (701)
T PF09763_consen 7 EERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIES 72 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666766665 35677788888999999999999999999999999999999999999998864
No 7
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.27 E-value=17 Score=36.16 Aligned_cols=40 Identities=15% Similarity=0.166 Sum_probs=26.6
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWL 240 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl 240 (280)
...|+..=.++-+-+++|+.+...|.++.+.+.++++-.-
T Consensus 234 q~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~ 273 (365)
T KOG2391|consen 234 QESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILK 273 (365)
T ss_pred HHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3444444445555577888888888888888888776433
No 8
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=80.52 E-value=69 Score=32.45 Aligned_cols=115 Identities=17% Similarity=0.229 Sum_probs=78.1
Q ss_pred hHHHHHHHHhhhhhhhhHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhH
Q 023619 160 LEASLLQLIQNHQHSSLKLRE---QTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQT 236 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKe---eqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT 236 (280)
+.+-|.++-..|+......++ ..+..........+.+.+.+.+..+....+. |+..++.-.+=++..-..|.+|+
T Consensus 71 ~~~~l~~l~~~l~~~~~~~~eq~~~l~~~~~ql~~~~~~~~~~i~e~~~~~~~el--~~~~~~~Ll~~~~~~~e~f~e~l 148 (448)
T COG1322 71 LIQELNELKARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAEL--NQQNLKQLLKPLREVLEKFREQL 148 (448)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555542 3334444444555566666667776666654 55666666677777888888888
Q ss_pred HH-HHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 023619 237 DQ-WLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIRN 276 (280)
Q Consensus 237 ~Q-Wl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~ 276 (280)
++ -.+.+.....-+.+|=-..+=...+..|...+..+|..
T Consensus 149 ~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~ 189 (448)
T COG1322 149 EQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKG 189 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88 77788888888888888888888888888888887753
No 9
>PF13166 AAA_13: AAA domain
Probab=80.19 E-value=43 Score=33.72 Aligned_cols=95 Identities=18% Similarity=0.230 Sum_probs=60.4
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-HHHHH---HH---HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAK-RVSDL---LT---DALNGGVQESYVIEKRIELEIRTLAATIAKF 232 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~-aLTda---LV---D~LN~GVaqAy~NQKrIE~EaKeL~~ttakf 232 (280)
.-..+...+.+|.......+.+++.++...-.... .+.+. +. ..+...+..+-...+.++.+.+.+......+
T Consensus 371 ~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l 450 (712)
T PF13166_consen 371 IIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKEL 450 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888887766666666666555443322 12111 12 2223344445555566667777777777788
Q ss_pred HHhHHHHHHHHHHHHHhhhhhc
Q 023619 233 MKQTDQWLATSHAINTAVKEIG 254 (280)
Q Consensus 233 aKQT~QWl~lvd~fn~aLKEIG 254 (280)
.++...=...++.||+-|+.+|
T Consensus 451 ~~~~~~~~~~~~~iN~~L~~~g 472 (712)
T PF13166_consen 451 EAQLKNTEPAADRINEELKRLG 472 (712)
T ss_pred HHHHhhhHHHHHHHHHHHHHhC
Confidence 8887777888899999999886
No 10
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.11 E-value=63 Score=33.25 Aligned_cols=73 Identities=16% Similarity=0.219 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHh-HHHHHHHHHHHHHHHHHHHHhHHH
Q 023619 161 EASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVI-EKRIELEIRTLAATIAKFMKQTDQ 238 (280)
Q Consensus 161 esmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~N-QKrIE~EaKeL~~ttakfaKQT~Q 238 (280)
-..|..=+|+.+.+.+.+..+++..++|--+ | ..-.+.++..|+++..| ...++.|..+|+...+++..+.++
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~----L-~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENER----L-QKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556677777777777666655555211 1 11245677777777766 346666666666665555544444
No 11
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=74.30 E-value=78 Score=29.75 Aligned_cols=93 Identities=17% Similarity=0.286 Sum_probs=70.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023619 163 SLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLAT 242 (280)
Q Consensus 163 mLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~l 242 (280)
.|..+|+..--+....+..++.. ++-..-+....+...+-++.=|...=..++.++++.+++...+.+..||...-+..
T Consensus 160 ~l~~~LR~~~i~~~~~k~~~~~~-~~k~~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~~~ 238 (267)
T PF09903_consen 160 PLITLLRNAAIKSAKYKKEQENK-KEKMEDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLLSS 238 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666555522 22223445567777777777677777789999999999999999999999999999
Q ss_pred HHHHHHhhhhhccH
Q 023619 243 SHAINTAVKEIGDF 256 (280)
Q Consensus 243 vd~fn~aLKEIGDV 256 (280)
..+++.+++-|-++
T Consensus 239 ~~~l~~~~~ki~~~ 252 (267)
T PF09903_consen 239 TNNLRGANNKIAGL 252 (267)
T ss_pred HHHHHHHHhhhccc
Confidence 99999999888664
No 12
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=73.03 E-value=66 Score=30.26 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=34.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 023619 208 VQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINT 248 (280)
Q Consensus 208 VaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~ 248 (280)
+-+.++|..+||.|.--|+.+.+.+.=||-||..-+=..-.
T Consensus 169 ~l~~~e~s~kId~Ev~~lk~qi~s~K~qt~qw~~g~v~~~~ 209 (220)
T KOG3156|consen 169 DLQIKEISTKIDQEVTNLKTQIESVKTQTIQWLIGVVTGTS 209 (220)
T ss_pred chhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999875543333
No 13
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=72.57 E-value=18 Score=32.47 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=36.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHH
Q 023619 211 SYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFEN 258 (280)
Q Consensus 211 Ay~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVEN 258 (280)
+-.+++.++.|+++|...++.+.+....-..+-++++.-.+|+.+|++
T Consensus 118 Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 118 VDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334578888889988888888888777777777777777777777764
No 14
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.31 E-value=38 Score=36.77 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=55.5
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHh
Q 023619 200 LTDALNGGVQESYVIEKRIELEIRTLA-ATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIRNIY 278 (280)
Q Consensus 200 LVD~LN~GVaqAy~NQKrIE~EaKeL~-~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~v~ 278 (280)
|....+.++.++++=.-+|..|...|. ++++...---.+-..+.+.++.||+|+-|+|+|-.+-|-=+.-+-+.|+.+.
T Consensus 180 l~~ta~~~igeaeaFaE~L~reLq~LdgANiqsilaSE~~Vn~ll~~ldaAl~~vd~~e~~Ld~yediL~hvre~iE~Ie 259 (867)
T KOG2148|consen 180 LLGTAVLGIGEAEAFAERLKRELQALDAANIQSILASEPLVNELLNGLDAALNEVDDMEEWLDSYEDILRHVREDIESIE 259 (867)
T ss_pred HHhHHhhchhhHHHHHHHHHHHHHhhhcccHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666666555556666655554 3444444444566778889999999999999999988877777777777664
No 15
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=68.10 E-value=66 Score=32.38 Aligned_cols=80 Identities=14% Similarity=0.197 Sum_probs=45.0
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 023619 166 QLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHA 245 (280)
Q Consensus 166 sIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~ 245 (280)
.-++|||....+++-++++.+.+...+.. +....-+..+.+=.-..+++.|-..|+.+...+..+..+=.--...
T Consensus 92 es~~e~q~e~~qL~~qnqkL~nqL~~~~~-----vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~ 166 (401)
T PF06785_consen 92 ESVEERQQESEQLQSQNQKLKNQLFHVRE-----VFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQT 166 (401)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHH
Confidence 34789999999999999999988776655 2223333333333334444444444444444444444333333333
Q ss_pred HHHhh
Q 023619 246 INTAV 250 (280)
Q Consensus 246 fn~aL 250 (280)
+|..|
T Consensus 167 LnrEL 171 (401)
T PF06785_consen 167 LNREL 171 (401)
T ss_pred HHHHH
Confidence 33333
No 16
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=67.35 E-value=1.1e+02 Score=28.60 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=53.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Q 023619 194 KRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSI 270 (280)
Q Consensus 194 ~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~I 270 (280)
-.++++|-+-+-.+++.-..=+++.|..++.-... ..+......|..-++.++..+| +|++.|-+..-+||+.+
T Consensus 145 v~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a~~~~k--~e~~Rf~~~k~~D~k~~ 218 (243)
T cd07666 145 VLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECANNALK--ADWERWKQNMQTDLRSA 218 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34445555555555555555556666666633223 5677778889999999999999 89999999999999875
No 17
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=65.69 E-value=78 Score=29.17 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=36.8
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHH
Q 023619 202 DALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMD 264 (280)
Q Consensus 202 D~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE 264 (280)
.+++..|.++..|.++|.-|.+.|+..+..+---+.+...-+..+++.++-+--.-+-+++++
T Consensus 4 ~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~ 66 (193)
T PF14662_consen 4 SDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALE 66 (193)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777777777777776666655555555555555555544433334444443
No 18
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=65.52 E-value=1.7e+02 Score=30.13 Aligned_cols=44 Identities=25% Similarity=0.321 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHH---HHHHHHHHHHH
Q 023619 223 RTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFE---NWMKTMDLDCK 268 (280)
Q Consensus 223 KeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVE---NWAk~IE~Dmk 268 (280)
-.|..++..+..++.+-..-+.++.++|| ||.. ||.+++=..+.
T Consensus 168 ~~L~~qi~~L~~~n~~i~~ea~nLt~ALk--gd~K~rG~WGE~qLerIL 214 (475)
T PRK10361 168 HTLAHEIRNLQQLNAQMAQEAINLTRALK--GDNKTQGNWGEVVLTRVL 214 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCcCcchHHHHHHHHH
Confidence 34555555566666666667777777776 5642 88887644433
No 19
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=65.29 E-value=37 Score=32.61 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=40.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh-hccHHHHHHHHHHHH
Q 023619 209 QESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKE-IGDFENWMKTMDLDC 267 (280)
Q Consensus 209 aqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKE-IGDVENWAk~IE~Dm 267 (280)
..+|.+....-.-...|...-..+.++.++|..+++.++..+++ +..|++|.+.||.=+
T Consensus 325 ~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~~~~N~~~i~~n~~~le~Ri 384 (388)
T PF04912_consen 325 KSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEEKFKENMETIEKNVKKLEERI 384 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666667777777788888899999988888664 455666666665433
No 20
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=62.09 E-value=66 Score=24.54 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcc
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGD 255 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGD 255 (280)
++.+|.-+..+-.+-..|-.|..++-.++..+....+.=..-++.+-++++++|+
T Consensus 28 l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~ 82 (90)
T PF06103_consen 28 LDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGE 82 (90)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4444444444444445555555555555555555444444444444444444443
No 21
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=61.15 E-value=9.8 Score=36.75 Aligned_cols=19 Identities=16% Similarity=0.452 Sum_probs=8.4
Q ss_pred hhccHHHHHHHHHHHHHHH
Q 023619 252 EIGDFENWMKTMDLDCKSI 270 (280)
Q Consensus 252 EIGDVENWAk~IE~Dmk~I 270 (280)
.|+++|.+...|+.++..+
T Consensus 152 ris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 152 RISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHH
Confidence 3444444444444444333
No 22
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=59.18 E-value=51 Score=30.48 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHH---------------------HHHHHHHHHHHHHHHHHH
Q 023619 218 IELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFE---------------------NWMKTMDLDCKSINAAIR 275 (280)
Q Consensus 218 IE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVE---------------------NWAk~IE~Dmk~IeeaLe 275 (280)
||.+.|.|..++..+.+|=..-...+..|-.++..||++| .+.+.=+.|+..+.++|+
T Consensus 34 LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~L~~~E~~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~ 112 (234)
T cd07665 34 EEQRLRKLHAVVETLVNHRKELALNTALFAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLA 112 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
No 23
>PRK04863 mukB cell division protein MukB; Provisional
Probab=56.92 E-value=1.6e+02 Score=34.17 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=70.3
Q ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHH--------HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Q 023619 158 GGLEASLLQLIQNHQHSSLKLREQTERAK--------RDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATI 229 (280)
Q Consensus 158 ~~lesmLSsIlKEHq~kQa~lKeeqEkaR--------kEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~tt 229 (280)
..++.-|+.+=++|+..+...+-..+-.+ .+.+.....=.++.+++++..++++-...-.+..+..+|...+
T Consensus 516 ~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i 595 (1486)
T PRK04863 516 QQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARI 595 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666677777766655444443333222 2344445555567788899999998888899999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 230 AKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 230 akfaKQT~QWl~lvd~fn~aLKEI 253 (280)
.+|.++..+|.+.-+.+.. |.|-
T Consensus 596 ~~l~~~ap~W~~a~~al~~-L~eq 618 (1486)
T PRK04863 596 QRLAARAPAWLAAQDALAR-LREQ 618 (1486)
T ss_pred HHHHHhChHHHhhHHHHHH-HHHh
Confidence 9999999999999999888 6665
No 24
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=56.43 E-value=1e+02 Score=25.27 Aligned_cols=72 Identities=19% Similarity=0.188 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 175 SLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 175 Qa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
....++..+..+..+-.-+..||..|.+..|.-|+.+--....++....+|. +|...=..+++.++..|++|
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le-------~~l~e~~~~l~~lq~qL~~L 77 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLE-------KQLKEKEALLESLQAQLKEL 77 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCTTHHCHCCCHCTSSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 4456667788888888899999999999999999888766666666555443 34333344444444444433
No 25
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=56.06 E-value=60 Score=29.80 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHH----------HHH-----------HHHHHHHHHHHHHHH
Q 023619 218 IELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFE----------NWM-----------KTMDLDCKSINAAIR 275 (280)
Q Consensus 218 IE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVE----------NWA-----------k~IE~Dmk~IeeaLe 275 (280)
+|.+.|.|...+..+.+|=..-...+..|-.++..||++| +-+ +.-+.|+..+.++|+
T Consensus 34 Le~~Lk~l~k~~~~lv~~rkela~~~~efa~s~~~L~~~E~~~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~ 112 (234)
T cd07664 34 LDQQLRKLHASVESLVCHRKELSANTAAFAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLG 112 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHH
No 26
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=55.60 E-value=2e+02 Score=27.85 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHH
Q 023619 180 EQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFE 257 (280)
Q Consensus 180 eeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVE 257 (280)
+.+|.+|++|+.-|.++-+.-..-=--.+.++-.|..++...+.+....+..+.++.+.-..-+.+++.-+.+-|..+
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~ 118 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITE 118 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Confidence 456777777777777664433222223455666666666666666666666666666666666655655555543333
No 27
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=55.50 E-value=45 Score=26.07 Aligned_cols=57 Identities=11% Similarity=0.312 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH--Hhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHhc
Q 023619 223 RTLAATIAKFMKQTDQWLATSHAIN--TAVKEI-GDFENWMKTMDLDCKSINAAIRNIYQ 279 (280)
Q Consensus 223 KeL~~ttakfaKQT~QWl~lvd~fn--~aLKEI-GDVENWAk~IE~Dmk~IeeaLe~v~~ 279 (280)
.+++.++.++.....+|..+.+..+ ..++++ .|+++=-+.||-|+..++.|+..+.+
T Consensus 8 ~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~ 67 (97)
T PF09177_consen 8 DEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEK 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666777777888888766654 223332 46777788889999999999988765
No 28
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=53.97 E-value=2.3e+02 Score=29.50 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 023619 181 QTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAV 250 (280)
Q Consensus 181 eqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aL 250 (280)
+-+++.+|++.-..+.....+..++..++++-.---++-..+..|...+.+++..-+.-...++.++.-|
T Consensus 279 Ee~rrhrEil~k~eReasle~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql 348 (502)
T KOG0982|consen 279 EEERRHREILIKKEREASLEKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQL 348 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 3458889999999999999999999998876555455555555555555555444433444444444433
No 29
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.35 E-value=98 Score=24.49 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=36.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHhhhhhccHH
Q 023619 208 VQESYVIEKRIELEIRTLAAT-----IAKFMKQTDQWLATSHAINTAVKEIGDFE 257 (280)
Q Consensus 208 VaqAy~NQKrIE~EaKeL~~t-----takfaKQT~QWl~lvd~fn~aLKEIGDVE 257 (280)
..++..=-.+|..+...|+.. ...|.-+-.||-.-+..++.+|.+||+--
T Consensus 23 ~~~i~~~l~~l~s~~~~l~~~W~G~a~~~f~~~~~~w~~~~~~l~~~l~~i~~~l 77 (97)
T COG4842 23 SGEIQALLQDLASEIAKLQSAWEGDAAEAFQSEQQQWNQAATELNEALEQLADAL 77 (97)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455666777777654 46788888999999999999998888754
No 30
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=51.86 E-value=1.2e+02 Score=24.65 Aligned_cols=40 Identities=18% Similarity=0.192 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhH-----HHHHHHHHHHHHhhhhhcc
Q 023619 216 KRIELEIRTLAATIAKFMKQT-----DQWLATSHAINTAVKEIGD 255 (280)
Q Consensus 216 KrIE~EaKeL~~ttakfaKQT-----~QWl~lvd~fn~aLKEIGD 255 (280)
+.|+...++|+.....+.++. .-...+.+.++..++++|-
T Consensus 83 ~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~i~~~i~~~v~~~a~ 127 (158)
T PF03938_consen 83 QELQQKEQELQQFQQQAQQQLQQEEQELLQPIQKKINKAVEEYAK 127 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444332 2366677777777777754
No 31
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.77 E-value=2.1e+02 Score=26.87 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=9.0
Q ss_pred eecccccCCCCCCCCCC
Q 023619 117 LKIPERKTMSSPPQVPP 133 (280)
Q Consensus 117 ~~~~~~~~~~~~~~~~~ 133 (280)
+||-++-..|+||..++
T Consensus 89 ~kiRes~a~s~p~sa~a 105 (222)
T KOG4514|consen 89 AKIRESVAASAPSSAHA 105 (222)
T ss_pred HHHHhccCCCCCCcccc
Confidence 35666665555554433
No 32
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=50.44 E-value=1.2e+02 Score=26.07 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=48.1
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HHHhhhhhccHH-----HHHHHHHHHHHHHHHH
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHA--INTAVKEIGDFE-----NWMKTMDLDCKSINAA 273 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~--fn~aLKEIGDVE-----NWAk~IE~Dmk~Ieea 273 (280)
++.+......++....+|-++.+.|......|..-...|...=.. +.++|..+||+. .|......|+..+...
T Consensus 33 ~~~le~~Lk~l~~~~~~l~~~~~~l~~~~~e~~~~~~~la~~E~~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~ 112 (236)
T PF09325_consen 33 VDKLEEQLKKLYKSLERLVKRRQELASALAEFGSSFSQLAKSEEEKSLSEALSQLAEAFEKISELLEEQANQEEETLGEP 112 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 445555556666667777777777777777777777777666555 666666666653 4445555555555554
Q ss_pred HH
Q 023619 274 IR 275 (280)
Q Consensus 274 Le 275 (280)
|+
T Consensus 113 L~ 114 (236)
T PF09325_consen 113 LR 114 (236)
T ss_pred HH
Confidence 44
No 33
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=50.05 E-value=5.4e+02 Score=31.12 Aligned_cols=96 Identities=21% Similarity=0.219 Sum_probs=73.2
Q ss_pred cccchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 023619 156 AAGGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQ 235 (280)
Q Consensus 156 ~~~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQ 235 (280)
.-.+|++++..+-. +-.++.+.+.+.|+.++....-+..+.+.+.+ ++..+.++-.-.++.+.|.-+++.........
T Consensus 1014 ~~~kle~~l~~le~-~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~-~~~~~~el~~~l~kke~El~~l~~k~e~e~~~ 1091 (1930)
T KOG0161|consen 1014 AKAKLEQQLDDLEV-TLEREKRIRMELEKAKRKLEGELKDLQESIEE-LKKQKEELDNQLKKKESELSQLQSKLEDEQAE 1091 (1930)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34568888876544 44567778888888888888777666666655 88888888888888888888888888888877
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 023619 236 TDQWLATSHAINTAVKEI 253 (280)
Q Consensus 236 T~QWl~lvd~fn~aLKEI 253 (280)
..+-.+.+..+...++||
T Consensus 1092 ~~~l~k~i~eL~~~i~el 1109 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKEL 1109 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777776
No 34
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.70 E-value=1.6e+02 Score=26.69 Aligned_cols=58 Identities=14% Similarity=0.269 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Q 023619 215 EKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAI 274 (280)
Q Consensus 215 QKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaL 274 (280)
--.+|...++|...++.|.+.+.......+.|-.++..+||.|| ..+=+=|..+.+++
T Consensus 13 i~~lE~hl~~l~~~~~~lv~k~~~L~~~~~~fak~~~~la~~E~--~~L~~~L~~lae~~ 70 (211)
T cd07598 13 ITNVEKHFGELCQDFAAYTRKTARLRDKGDELAKSINAYADTEN--PSLKQGLKNFAECL 70 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccC--HHHHHHHHHHHHHH
Confidence 34578888888888888888888888888888888888888884 44444444444443
No 35
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=47.22 E-value=1.8e+02 Score=24.83 Aligned_cols=60 Identities=22% Similarity=0.245 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Q 023619 157 AGGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAAT 228 (280)
Q Consensus 157 ~~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~t 228 (280)
+.++++.|++|=.+.+ +...++.+...+..+. -+.+-..+.+...++..|+.....+...
T Consensus 22 ~~~v~~~l~~LEae~q--~L~~kE~~r~~~~k~~----------ae~a~~~L~~~~~~~~~i~e~~~kl~~~ 81 (126)
T PF09403_consen 22 TASVESELNQLEAEYQ--QLEQKEEARYNEEKQE----------AEAAEAELAELKELYAEIEEKIEKLKQD 81 (126)
T ss_dssp -HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 4568888888877776 3444433332222221 1122333455556666666666666554
No 36
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.72 E-value=46 Score=32.63 Aligned_cols=23 Identities=13% Similarity=0.186 Sum_probs=15.1
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHH
Q 023619 165 LQLIQNHQHSSLKLREQTERAKR 187 (280)
Q Consensus 165 SsIlKEHq~kQa~lKeeqEkaRk 187 (280)
+.+.++|..+|+++.+.+|++|+
T Consensus 56 ~~~a~~~~~kq~eL~~rqeEL~R 78 (313)
T KOG3088|consen 56 STQAKDLAKKQAELLKKQEELRR 78 (313)
T ss_pred cchhhHHHHHHHHHHHHHHHHHH
Confidence 66778888777776655554443
No 37
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=46.69 E-value=2.2e+02 Score=25.58 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Q 023619 231 KFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKS 269 (280)
Q Consensus 231 kfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~ 269 (280)
.|..--.+|..++.+--.--.+++.+++=.+.+.+.+..
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~ 214 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAE 214 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666655555555555555544444444433
No 38
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=46.47 E-value=99 Score=27.61 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=34.2
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHhhhhhccHHHHHHH-----HHHHHHHHHHHHH
Q 023619 205 NGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLAT--SHAINTAVKEIGDFENWMKT-----MDLDCKSINAAIR 275 (280)
Q Consensus 205 N~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~l--vd~fn~aLKEIGDVENWAk~-----IE~Dmk~IeeaLe 275 (280)
.....++|.-.-.+-+.-++|...+..|++-....... -..+.++|..+||+.--... =..|+..+.++|.
T Consensus 25 e~~Lk~l~~~~e~lv~~r~ela~~~~~f~~s~~~L~~~E~~~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~ 102 (224)
T cd07623 25 DQQLRKLHASVESLVNHRKELALNTGSFAKSAAMLSNCEEHTSLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLK 102 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555544442 23455555566665433332 2334555555554
No 39
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=46.41 E-value=3.7e+02 Score=28.14 Aligned_cols=43 Identities=21% Similarity=0.480 Sum_probs=28.5
Q ss_pred HHHHHHHHHH-HHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHH
Q 023619 223 RTLAATIAKF-MKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSIN 271 (280)
Q Consensus 223 KeL~~ttakf-aKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~Ie 271 (280)
.++......| ..-+++|..+...++. |+++|-..|...+..|.
T Consensus 381 ~el~p~l~~~~~~ll~~~~~~~s~l~~------~f~~w~~~i~~tf~~i~ 424 (544)
T PF04163_consen 381 DELLPSLTNFKNQLLQEWTMMTSNLNS------DFALWNREIFSTFESIS 424 (544)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhh------hHHHhhHHHHHHHHHHH
Confidence 3333334344 3445566666666654 99999999999987776
No 40
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.71 E-value=1.9e+02 Score=24.71 Aligned_cols=44 Identities=18% Similarity=0.269 Sum_probs=23.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 210 ESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 210 qAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
+..+=++.|..|.-+++..+..+....+.--.++..+...|.+|
T Consensus 79 e~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 79 EQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555555555555555555444
No 41
>smart00150 SPEC Spectrin repeats.
Probab=44.76 E-value=1.1e+02 Score=21.61 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=44.5
Q ss_pred chHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 023619 159 GLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQ 238 (280)
Q Consensus 159 ~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~Q 238 (280)
.-.+.+..++++|+.-+... ..++.-+.++..+++.|+..- +.+...|......|......+......
T Consensus 28 ~d~~~~~~~~~~~~~~~~e~-----~~~~~~v~~~~~~~~~L~~~~-------~~~~~~i~~~~~~l~~~w~~l~~~~~~ 95 (101)
T smart00150 28 KDLESVEALLKKHEALEAEL-----EAHEERVEALNELGEQLIEEG-------HPDAEEIEERLEELNERWEELKELAEE 95 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777888887655444 345566677777888887762 234455666666666666666665555
Q ss_pred HHH
Q 023619 239 WLA 241 (280)
Q Consensus 239 Wl~ 241 (280)
+..
T Consensus 96 r~~ 98 (101)
T smart00150 96 RRQ 98 (101)
T ss_pred HHH
Confidence 543
No 42
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=42.64 E-value=2.3e+02 Score=24.73 Aligned_cols=41 Identities=15% Similarity=0.111 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHhhhhhc
Q 023619 214 IEKRIELEIRTLAATIAKFMKQTDQWLATSHA-INTAVKEIG 254 (280)
Q Consensus 214 NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~-fn~aLKEIG 254 (280)
--.||-+....|......|.++.+.|..+-.. +..+|+.+|
T Consensus 26 i~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~ 67 (185)
T cd07628 26 IFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFS 67 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHH
Confidence 34566667788888899999999999999888 999999888
No 43
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=42.27 E-value=3.3e+02 Score=26.43 Aligned_cols=60 Identities=13% Similarity=0.255 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Q 023619 216 KRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIR 275 (280)
Q Consensus 216 KrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe 275 (280)
..|..+...++.+.+.+..+.++.....+.++..+..++|.+.--..+++|...-.+..+
T Consensus 313 ~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 313 QQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666666667777777788888999999999999999877665543
No 44
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=41.66 E-value=82 Score=24.69 Aligned_cols=41 Identities=10% Similarity=0.198 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHH
Q 023619 217 RIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFE 257 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVE 257 (280)
.+..+.++|+.....|..+-.+|....+.+..++.+|.++.
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 3 ELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566777778888888888888888777777777776665
No 45
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=41.58 E-value=2.5e+02 Score=24.93 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=15.7
Q ss_pred HHHHhHHHHHHHHHHHHHhh-hhh-ccHHHHHHHHH
Q 023619 231 KFMKQTDQWLATSHAINTAV-KEI-GDFENWMKTMD 264 (280)
Q Consensus 231 kfaKQT~QWl~lvd~fn~aL-KEI-GDVENWAk~IE 264 (280)
...+-..++..+++.|...| ..+ ..++.|.+.|.
T Consensus 66 ~~r~i~~~~~~~~~~~~~~li~pLe~~~e~d~k~i~ 101 (219)
T PF08397_consen 66 VHRRIENELEEVFKAFHSELIQPLEKKLEEDKKYIT 101 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555555555433 111 44555555544
No 46
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=40.97 E-value=2.8e+02 Score=25.13 Aligned_cols=72 Identities=18% Similarity=0.164 Sum_probs=48.9
Q ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhHHHHHHhHHHHHHHHHHHHHHH
Q 023619 158 GGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDA---LNGGVQESYVIEKRIELEIRTLAATI 229 (280)
Q Consensus 158 ~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~---LN~GVaqAy~NQKrIE~EaKeL~~tt 229 (280)
......+..+++.|+.-|..+-++.-..-+....++..+.+.|.++ |+.-...+-.|...+..+.+.|...+
T Consensus 148 ~~~~~~~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~ 222 (251)
T PF09753_consen 148 TTSQASLEKILQHHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHS 222 (251)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888899999898888888877777777777777766654 23333445556666666666665543
No 47
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=40.65 E-value=2.5e+02 Score=25.62 Aligned_cols=67 Identities=10% Similarity=0.283 Sum_probs=48.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHhc
Q 023619 213 VIEKRIELEIRTLAATIAKFMKQTDQWLA----TSHAINTAVKEIGDFENWMKTMDLDCKSINAAIRNIYQ 279 (280)
Q Consensus 213 ~NQKrIE~EaKeL~~ttakfaKQT~QWl~----lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~v~~ 279 (280)
...+.+..++.+++.++..|..|...-.. +.+++..-|++|..+-+.+..|-.|+..+.+...-.|.
T Consensus 43 ~~~~q~~~Qi~qlqnQiq~y~nql~n~~~L~~~~~~~~~~~l~~l~~L~~q~q~l~~~~~~~~~~f~~~y~ 113 (246)
T TIGR02780 43 ESVEQLNNQIQQLQNQIQRYENQLKNTMSLPANIWNRLESSLQKLTNIISQAQALAYDIANLDDIFSQLYQ 113 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 34455556666666666666666555332 45777778888899999999999999999988876664
No 48
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=40.53 E-value=2.1e+02 Score=23.61 Aligned_cols=95 Identities=17% Similarity=0.197 Sum_probs=65.7
Q ss_pred cccchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023619 156 AAGGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVS--DLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFM 233 (280)
Q Consensus 156 ~~~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLT--daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfa 233 (280)
+...+.+.++.+-...+.=..+.+.....-..+.+..+..+. +.+++.|+.+|+.+...-+||..+.-+=...+....
T Consensus 27 ~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~ 106 (132)
T PF10392_consen 27 SELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLT 106 (132)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 445577888888777776666666666666666665555544 348888888988888888888888877777766666
Q ss_pred HhHHHHHHHHHHHHHhh
Q 023619 234 KQTDQWLATSHAINTAV 250 (280)
Q Consensus 234 KQT~QWl~lvd~fn~aL 250 (280)
.+...--...+=++.++
T Consensus 107 ~~L~rl~~t~~LLR~~~ 123 (132)
T PF10392_consen 107 SQLERLHQTSDLLRSVS 123 (132)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66665555555555444
No 49
>PRK06835 DNA replication protein DnaC; Validated
Probab=40.49 E-value=2.4e+02 Score=26.95 Aligned_cols=77 Identities=12% Similarity=0.176 Sum_probs=49.1
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHH---HHHHHHHHHHHHHHHHHhHHHH
Q 023619 163 SLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKR---IELEIRTLAATIAKFMKQTDQW 239 (280)
Q Consensus 163 mLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKr---IE~EaKeL~~ttakfaKQT~QW 239 (280)
-...|+++++.++...+..+++++.|+-....++.+.=..--..+|..+-.=... .+....+|++....+..+-.+.
T Consensus 5 ~~~~i~r~y~~~r~~~~~~~~~r~~e~~~~~P~~~~id~~i~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~l 84 (329)
T PRK06835 5 YISEILKEYEKRRDKEELELKNRKEEVYKKIPEIAEIDDEIAKLGIKLSRAILKNPDKKEETLKELKEKITDLRVKKAEL 84 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999988888764333333344433322211 1445556666655555444433
No 50
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=40.12 E-value=1.6e+02 Score=24.20 Aligned_cols=57 Identities=16% Similarity=0.264 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 186 KRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 186 RkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
--+++..+..+++.|+..+ ..|..+...|...+...+.-...|..++..++-+.-.+
T Consensus 12 ELe~L~~l~~lS~~L~~ql-----------e~L~~kl~~m~dg~e~Va~Vl~NW~nV~r~Is~AS~~l 68 (103)
T PF08654_consen 12 ELEALKQLRDLSADLASQL-----------EALSEKLETMADGAEAVASVLANWQNVFRAISMASLSL 68 (103)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhccHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3456666777777777665 45777788888888888888888888888887775443
No 51
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=39.70 E-value=1.6e+02 Score=28.30 Aligned_cols=56 Identities=21% Similarity=0.207 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023619 178 LREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFM 233 (280)
Q Consensus 178 lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfa 233 (280)
++++.-..=.+++.-+..+++-+.+.++.+|.+--.....|+..+..+++.+.++.
T Consensus 15 r~eEti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~ 70 (297)
T PF11945_consen 15 RREETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQ 70 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666678889999999999999999999888888888888888888777764
No 52
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=38.69 E-value=4.8e+02 Score=30.79 Aligned_cols=78 Identities=12% Similarity=0.089 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh----hhhccHHHHHHHHH
Q 023619 189 SVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAV----KEIGDFENWMKTMD 264 (280)
Q Consensus 189 AiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aL----KEIGDVENWAk~IE 264 (280)
-++...+..+.|..+--.|++.+-.-.+.|..|++.|-.++..-.+..+......+.-+.+| -||+++|-=.+.+=
T Consensus 1665 ~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1665 ILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 44455555566666666666667666677777777777776666666666555555544544 36777765444444
Q ss_pred HH
Q 023619 265 LD 266 (280)
Q Consensus 265 ~D 266 (280)
.|
T Consensus 1745 ~~ 1746 (1758)
T KOG0994|consen 1745 DH 1746 (1758)
T ss_pred HH
Confidence 33
No 53
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=37.96 E-value=3.1e+02 Score=24.81 Aligned_cols=65 Identities=18% Similarity=0.191 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 187 RDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 187 kEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
..++.-...+.+...+.+. +....+.+.+.+.+|.++|+++.+.+..+..+-..+.. =|..|+++
T Consensus 44 ~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~-en~~L~~l 108 (276)
T PRK13922 44 GDVVSPVQRVVNAPREFVS-GVFESLASLFDLREENEELKKELLELESRLQELEQLEA-ENARLREL 108 (276)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445555566666666665 45667788899999999999999999888886654433 33445443
No 54
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=37.54 E-value=2.9e+02 Score=24.41 Aligned_cols=76 Identities=9% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHhhhhhccHH-----HHHHHHHHHHHHHHHH
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATS--HAINTAVKEIGDFE-----NWMKTMDLDCKSINAA 273 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lv--d~fn~aLKEIGDVE-----NWAk~IE~Dmk~Ieea 273 (280)
++.+......++.-..++.+.-++|...+..|++.......+= ..+..+|..+||+. .+.+.=..|+..+.++
T Consensus 13 i~~Le~~Lk~l~~~~~~l~~~r~ela~~~~efa~~~~~L~~~E~~~~l~~~l~~~a~~~~~~~~~~~~~a~~e~~~l~~~ 92 (216)
T cd07627 13 LDSLESQLKQLYKSLELVSSQRKELASATEEFAETLEALSSLELSKSLSDLLAALAEVQKRIKESLERQALQDVLTLGVT 92 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 023619 274 IRN 276 (280)
Q Consensus 274 Le~ 276 (280)
|+.
T Consensus 93 L~e 95 (216)
T cd07627 93 LDE 95 (216)
T ss_pred HHH
No 55
>PRK14160 heat shock protein GrpE; Provisional
Probab=37.05 E-value=3.4e+02 Score=25.06 Aligned_cols=66 Identities=12% Similarity=0.172 Sum_probs=43.3
Q ss_pred HHHHHHhHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Q 023619 208 VQESYVIEKR-IELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIR 275 (280)
Q Consensus 208 VaqAy~NQKr-IE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe 275 (280)
.+.=|.|-++ ..+|...+... ...+-...++-++|+|..||.-.++.+++.+-|+-=.+.+..+|+
T Consensus 87 ~~AefeN~RKR~~kE~e~~~~~--a~e~~~~~LLpVlDnLerAl~~~~~~~~l~~Gv~mi~kql~~vL~ 153 (211)
T PRK14160 87 TVAEYDNYRKRTAKEKEGIYSD--ACEDVLKELLPVLDNLERAAAVEGSVEDLKKGIEMTVKQFKTSLE 153 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhHHhHHHHHHhcccchhHHHHHHHHHHHHHHHHHH
Confidence 3444666654 44444444333 366778899999999999999888877776666555555544443
No 56
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=34.52 E-value=79 Score=24.21 Aligned_cols=56 Identities=21% Similarity=0.407 Sum_probs=36.9
Q ss_pred HHHHHHH-HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 023619 194 KRVSDLL-TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVK 251 (280)
Q Consensus 194 ~aLTdaL-VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLK 251 (280)
..+++.+ +..++..++++. ...++-..|++-+.+.+|.+++..=.=.++.+|.+||
T Consensus 10 k~iAes~Gi~~l~de~a~~L--a~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 10 KDIAESLGISNLSDEAAKAL--AEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHTT---B-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHcCCCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 3334333 346677777765 4467888999999999999998877777788888886
No 57
>PF12010 DUF3502: Domain of unknown function (DUF3502); InterPro: IPR022627 This domain is about 140 amino acids in length and is functionally uncharacterised. It is found in bacteria C-terminal to PF01547 from PFAM.
Probab=34.17 E-value=1.5e+02 Score=24.54 Aligned_cols=52 Identities=19% Similarity=0.256 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHH--HHHHHHHHHHhHHHHHH
Q 023619 190 VRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRT--LAATIAKFMKQTDQWLA 241 (280)
Q Consensus 190 iaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKe--L~~ttakfaKQT~QWl~ 241 (280)
++++.+|.+.-...|+.|..+.=....++..+.|+ +..=.+.++||.+.|++
T Consensus 78 iaa~~~v~~~Y~~~L~~G~vd~e~~~~~~~~kLk~AGidkV~~E~QkQlda~~~ 131 (134)
T PF12010_consen 78 IAACSNVWSEYYPPLETGLVDPEEALPEFNEKLKAAGIDKVIAELQKQLDAFLA 131 (134)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 45667777777777777766544444444444333 56667788888888865
No 58
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=33.89 E-value=3.8e+02 Score=24.71 Aligned_cols=76 Identities=12% Similarity=0.217 Sum_probs=53.6
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHhhhhhccHHHHHHHHHHHHHHHHHHHHH
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSH--AINTAVKEIGDFENWMKTMDLDCKSINAAIRN 276 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd--~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~ 276 (280)
...+-..++++..++++++.+..+++....++.++...=+..-+ =.+.+|-++=++||=.+..+.-+....+++..
T Consensus 40 l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~ 117 (225)
T COG1842 40 LAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEK 117 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677888899999999999999988888888776544322 23556667777777777777666666555443
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.90 E-value=5.1e+02 Score=29.31 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=62.8
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 023619 162 ASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLT------DALNGGVQESYVIEKRIELEIRTLAATIAKFMKQ 235 (280)
Q Consensus 162 smLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLV------D~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQ 235 (280)
.....++.|-.+.|++.+|.|++.-+-+..+ +.+.+.|- .+-|+++++++.--.+=|.-.++|..++..+.|.
T Consensus 479 ~q~e~~isei~qlqarikE~q~kl~~l~~Ek-q~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE 557 (1118)
T KOG1029|consen 479 KQRELMISEIDQLQARIKELQEKLQKLAPEK-QELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKE 557 (1118)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456666677888888887665554433 22222221 1234445555555555555668888999999999
Q ss_pred HHHHHHHHHHHHHhhhhhccHH
Q 023619 236 TDQWLATSHAINTAVKEIGDFE 257 (280)
Q Consensus 236 T~QWl~lvd~fn~aLKEIGDVE 257 (280)
+..=+.-+|-||+-|||+-.--
T Consensus 558 ~esk~~eidi~n~qlkelk~~~ 579 (1118)
T KOG1029|consen 558 TESKLNEIDIFNNQLKELKEDV 579 (1118)
T ss_pred HHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999999885433
No 60
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=32.49 E-value=3.7e+02 Score=24.15 Aligned_cols=57 Identities=19% Similarity=0.202 Sum_probs=40.5
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 200 LTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 200 LVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
+++.++.=+..+-.|...|..-...+...+..++++..+-..+++++...++++.++
T Consensus 193 ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~~ 249 (291)
T TIGR00996 193 LIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLADRDDALDDALAALSGASAQVRDL 249 (291)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 334444445556667777777777888888888888888888888888777766544
No 61
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=32.09 E-value=3.9e+02 Score=27.97 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=48.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHhc
Q 023619 209 QESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIRNIYQ 279 (280)
Q Consensus 209 aqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~v~~ 279 (280)
+-+-.|.-+=-.|+.+|.....++. ++.+...+-+-|+|-|...+...--.+++-|+|+|+
T Consensus 149 svlsEnLErrrQEaeELEgyCsqLk----------~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~ 209 (558)
T PF15358_consen 149 SVLSENLERRRQEAEELEGYCSQLK----------ENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQ 209 (558)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH----------HHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence 3355676777777777776666554 777888888999999999999999999999999875
No 62
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.18 E-value=1.8e+02 Score=25.59 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=35.6
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 204 LNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 204 LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
+..++..+.---.||-+..+.|......|.+..+.|...=..+..+|..+|+.
T Consensus 26 L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~ 78 (200)
T cd07624 26 FGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSA 78 (200)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 33333444444556666667788888888888888887777777777777744
No 63
>PF04383 KilA-N: KilA-N domain; InterPro: IPR018004 The amino-terminal module of the poxvirus D6R/NIR proteins defines a novel conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses []. Putative proteins with homology to the KilA-N domain have also been identified in Maverick transposable elements of the parabasalid protozoa Trichomonas vaginalis []. The KilA-N domain has been suggested to be homologous to the fungal DNA-binding APSES domain (see PDOC51299 from PROSITEDOC). In all proteins shown to contain the KilA-N domain, it occurs at the extreme amino terminus accompanied by a wide range of distinct carboxy-terminal domains. These carboxy-terminal modules may be enzymes, such as the nuclease domains, or might mediate additional, specific interactions with nucleic acids or proteins, like the RING (see PDOC00449 from PROSITEDOC) or CCCH fingers in the poxviruses []. The KilA-N domain is predicted to adopt an alpha-beta fold with four conserved strands and at least two conserved helices []. Some proteins known to contain a KilA-N domain are listed below: Bacteriophage P1 protein kilA (P19653 from SWISSPROT). Fowlpox virus (FPV) protein FPV236 (P14365 from SWISSPROT). Trichomonas vaginalis G3 Putative uncharacterised protein (A2D8C0 from SWISSPROT). Vaccinia virus hypothetical 21.7 kDa HindIII-C protein (P17366 from SWISSPROT). ; PDB: 1MB1_A 1L3G_A 1BM8_A.
Probab=31.15 E-value=25 Score=27.58 Aligned_cols=35 Identities=31% Similarity=0.522 Sum_probs=14.4
Q ss_pred HHhhhccccCcccchhhhhhchhhhHHHHHHhhhchhHHHH
Q 023619 44 FSILNARKSGWSSSTVLLFSYMHPTILETVLRWSISEEVYL 84 (280)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (280)
+++.+--+.|.... .|+||-++-.+.+| ||.+.++
T Consensus 65 ~~~~~~~~~~~~~G-----tyvh~~L~~~~a~W-iSp~f~~ 99 (111)
T PF04383_consen 65 ISIVIKGKNGRIQG-----TYVHPELAIHYAMW-ISPKFAL 99 (111)
T ss_dssp ---------STTTE-----EEEEHHHHHHHHH---------
T ss_pred ccccccccccccCc-----EEeeHHHHHHHHHh-ccccccc
Confidence 33444444444443 48999999999999 9987553
No 64
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=30.91 E-value=2.5e+02 Score=26.03 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=45.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHhc
Q 023619 208 VQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIRNIYQ 279 (280)
Q Consensus 208 VaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe~v~~ 279 (280)
...++.....++.|.+-|...-..-..-.++=...++.+++.=-+|-++|+=.+.-+.|...+.+.+...|.
T Consensus 17 k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 17 KNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666555544444444444455555555555556677888888888888888888777764
No 65
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=30.23 E-value=4.7e+02 Score=24.58 Aligned_cols=64 Identities=14% Similarity=0.183 Sum_probs=39.8
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHH
Q 023619 203 ALNGGVQESYVIEKRIELEIRTLAATIAKFMKQT---DQWLATSHAINTAVKEIGDFENWMKTMDLDCKS 269 (280)
Q Consensus 203 ~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT---~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~ 269 (280)
.+...|.+.|.+.. .+...|..+...+..++ .+-..-++++.++|+.-----+|.+++=.++..
T Consensus 17 ~~~~~l~~~~~~~~---~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~aL~~~k~rG~wGE~~Le~iLe 83 (304)
T PF02646_consen 17 KFEKRLEESFEQRS---EEFGSLKEQLKQLSEANGEIQQLSQEASNLTSALKNSKTRGNWGEMQLERILE 83 (304)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHH
Confidence 45555555555433 44445555555555555 888888888999998443334999987555443
No 66
>PRK11637 AmiB activator; Provisional
Probab=30.17 E-value=5.2e+02 Score=25.07 Aligned_cols=20 Identities=10% Similarity=0.147 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHhH
Q 023619 217 RIELEIRTLAATIAKFMKQT 236 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT 236 (280)
.++.+++.+......+.++.
T Consensus 93 ~~~~~i~~~~~ei~~l~~eI 112 (428)
T PRK11637 93 ETQNTLNQLNKQIDELNASI 112 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 67
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=29.98 E-value=4.2e+02 Score=23.99 Aligned_cols=52 Identities=23% Similarity=0.280 Sum_probs=30.4
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 023619 198 DLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKE 252 (280)
Q Consensus 198 daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKE 252 (280)
..|+|.+...|.-+ -|+||..-++|..-...+.|--.+.....+.||..=||
T Consensus 76 E~l~dP~RkEv~~v---RkkID~vNreLkpl~~~cqKKEkEykealea~nEknke 127 (159)
T PF04949_consen 76 EVLADPMRKEVEMV---RKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKE 127 (159)
T ss_pred HhhccchHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888777766 46666666666555555555444444444445444443
No 68
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.81 E-value=3.5e+02 Score=24.23 Aligned_cols=75 Identities=11% Similarity=0.079 Sum_probs=36.8
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHhhhhhccHH-----HHHHHHHHHHHHHHH
Q 023619 202 DALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATS----HAINTAVKEIGDFE-----NWMKTMDLDCKSINA 272 (280)
Q Consensus 202 D~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lv----d~fn~aLKEIGDVE-----NWAk~IE~Dmk~Iee 272 (280)
+.+.....+++..--.+=..-+.|......|++-...-...= ..+.+.|--+||++ +..+.-..|...+.+
T Consensus 14 ~~l~~~lk~~~~~~~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~ 93 (198)
T cd07630 14 TKLSANMKEAAEKFLKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGL 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 333444444444444455555555555555555554443321 04455555556554 334444455666666
Q ss_pred HHHH
Q 023619 273 AIRN 276 (280)
Q Consensus 273 aLe~ 276 (280)
+|++
T Consensus 94 ~L~~ 97 (198)
T cd07630 94 TLDL 97 (198)
T ss_pred HHHH
Confidence 6554
No 69
>PHA00448 hypothetical protein
Probab=29.72 E-value=2.9e+02 Score=22.07 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=28.6
Q ss_pred hhHHHHH-HhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 023619 206 GGVQESY-VIEKRIELEIRTLAATIAKFMKQTDQWLATS 243 (280)
Q Consensus 206 ~GVaqAy-~NQKrIE~EaKeL~~ttakfaKQT~QWl~lv 243 (280)
.=|..+| +-.|+|+..+|.=.+.+.+++||+.......
T Consensus 10 klVvkmY~~EAkrl~~~Ar~~A~~A~~lakqs~~l~~aA 48 (70)
T PHA00448 10 KLVVKLYFVEAKRLNDKARKDATRARRLAKQSRELSDAA 48 (70)
T ss_pred HHHHHHHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3344444 3478999999999999999999998765543
No 70
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=29.47 E-value=94 Score=28.98 Aligned_cols=49 Identities=12% Similarity=0.333 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Q 023619 217 RIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSI 270 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~I 270 (280)
++|...|.=....++|+.|...|++ ++.+|.-+-+.-+.+.||..|..-
T Consensus 42 K~E~DLKkEIKKLQR~RdQIK~W~~-----~~diKdk~~L~e~Rk~IE~~MErF 90 (233)
T PF04065_consen 42 KLEADLKKEIKKLQRLRDQIKTWLS-----SNDIKDKKKLLENRKLIEEQMERF 90 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc-----CcccccHHHHHHHHHHHHHHHHHH
Confidence 3444444444445599999999994 455666667889999999987643
No 71
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=29.46 E-value=3.2e+02 Score=22.38 Aligned_cols=40 Identities=18% Similarity=0.260 Sum_probs=25.4
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 023619 205 NGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSH 244 (280)
Q Consensus 205 N~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd 244 (280)
+..-.+...|-+.++...+.|...+..|..........-.
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 64 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKLQKSLKKYLDSIKKLSASQK 64 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 4455666666777777777777777777665555554444
No 72
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=28.80 E-value=2.6e+02 Score=21.23 Aligned_cols=35 Identities=9% Similarity=0.168 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 023619 217 RIELEIRTLAATIAKFMKQTDQWLATSHAINTAVK 251 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLK 251 (280)
.+-.+..++...+..-.+..+.....+.++-+.++
T Consensus 51 ~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~ 85 (90)
T PF06103_consen 51 DLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVS 85 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444443333
No 73
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=28.76 E-value=2.6e+02 Score=21.15 Aligned_cols=40 Identities=10% Similarity=0.237 Sum_probs=24.7
Q ss_pred HHHhhhhhHHHHHHhHHH---HHHHHHHHHHHHHHHHHhHHHH
Q 023619 200 LTDALNGGVQESYVIEKR---IELEIRTLAATIAKFMKQTDQW 239 (280)
Q Consensus 200 LVD~LN~GVaqAy~NQKr---IE~EaKeL~~ttakfaKQT~QW 239 (280)
+.+-++..+.++..|..+ |+..+.+|..++..|.|++.+-
T Consensus 15 v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l 57 (89)
T PF00957_consen 15 VKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKL 57 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344445555555555554 4566777777777777777653
No 74
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=28.53 E-value=3.8e+02 Score=23.05 Aligned_cols=78 Identities=6% Similarity=0.137 Sum_probs=62.2
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHH------------HHH
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDL------------DCK 268 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~------------Dmk 268 (280)
++.++..+..+..+-..++.+...|+....++...-.+...+++++...|+=...++.=.+.+.. =|.
T Consensus 23 ~~~~~~~l~~l~~~~~~Vs~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld~itr~Ln~p~~sV~~~~F~~~L~ 102 (157)
T PF04136_consen 23 TDEILDQLDELQEQYNSVSEKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELDPITRRLNSPGSSVNSDSFKPMLS 102 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHcCCCCcccchHHHHHHH
Confidence 34445557788888999999999999999999999999999999999999877777776665542 156
Q ss_pred HHHHHHHHHh
Q 023619 269 SINAAIRNIY 278 (280)
Q Consensus 269 ~IeeaLe~v~ 278 (280)
.|+++|.++.
T Consensus 103 ~LD~cl~Fl~ 112 (157)
T PF04136_consen 103 RLDECLEFLE 112 (157)
T ss_pred HHHHHHHHHH
Confidence 6778877764
No 75
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=28.52 E-value=3e+02 Score=21.86 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHH
Q 023619 256 FENWMKTMDLDCKS 269 (280)
Q Consensus 256 VENWAk~IE~Dmk~ 269 (280)
+..|.+.+|.-++.
T Consensus 85 LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 85 LDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHhhc
Confidence 45677777766543
No 76
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=28.38 E-value=7.1e+02 Score=26.11 Aligned_cols=43 Identities=9% Similarity=0.157 Sum_probs=30.8
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 023619 198 DLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWL 240 (280)
Q Consensus 198 daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl 240 (280)
...+..+...+..+-..+.....+..+|+...+.+.+.-+.|+
T Consensus 377 ~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 377 QASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 3445556666666666677777777788888888887778885
No 77
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.89 E-value=2.9e+02 Score=29.48 Aligned_cols=57 Identities=16% Similarity=-0.026 Sum_probs=46.0
Q ss_pred HHHHHHHHh-hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 023619 195 RVSDLLTDA-LNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVK 251 (280)
Q Consensus 195 aLTdaLVD~-LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLK 251 (280)
..++.+.|. .|-...+.|.|++.--..--..-.+..++..++.+|+++.+-++..+=
T Consensus 212 ~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iF 269 (591)
T KOG0057|consen 212 SASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIF 269 (591)
T ss_pred HHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHH
Confidence 333444443 588999999999988777788888889999999999999998887764
No 78
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=27.41 E-value=4.2e+02 Score=24.83 Aligned_cols=65 Identities=17% Similarity=0.220 Sum_probs=49.0
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHH-HHHHHHHH
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFE-NWMKTMDL 265 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVE-NWAk~IE~ 265 (280)
+|.+..++..+.-...||-++...+...+..|.|-..-|.+.=..+..+|.++|... +-+...+.
T Consensus 63 ~d~L~~~L~~ieki~~Rl~kr~~ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~ 128 (243)
T cd07666 63 VEAFSQKINVLDKISQRIYKEQREYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDK 128 (243)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 455555666666667777778889999999999999999999888999998887643 34444444
No 79
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=27.40 E-value=6.4e+02 Score=27.09 Aligned_cols=48 Identities=2% Similarity=0.112 Sum_probs=26.1
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHhhhh
Q 023619 205 NGGVQESYVIEKRIELEIRTLAATIAK----FMKQTDQWLATSHAINTAVKE 252 (280)
Q Consensus 205 N~GVaqAy~NQKrIE~EaKeL~~ttak----faKQT~QWl~lvd~fn~aLKE 252 (280)
..+..++..+|+.|.+.++.+...... +.+-=.+|.+-++.++..|+.
T Consensus 599 aeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~ 650 (717)
T PF10168_consen 599 AERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQD 650 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666655554433 223334566666666655543
No 80
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=27.37 E-value=3e+02 Score=21.36 Aligned_cols=67 Identities=10% Similarity=0.166 Sum_probs=45.9
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Q 023619 198 DLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSI 270 (280)
Q Consensus 198 daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~I 270 (280)
-.+.+.|-..|++|-..-..|..+..+|+..-..+..+..+...-... |+ .|-++|...|..=+..|
T Consensus 3 ~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~----L~--~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 3 LELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQ----LK--QERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HH--HHHHHHHHHHHHHHHhh
Confidence 346778888888888888888888888888877777655554443333 33 56667777776544333
No 81
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=27.09 E-value=2.8e+02 Score=21.06 Aligned_cols=103 Identities=12% Similarity=0.053 Sum_probs=62.1
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERA-KRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQ 238 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEka-RkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~Q 238 (280)
-...+..+++.|..-+..-....... .-.-......-+..+++.++..|..+ .|...++...++|-..=.++.-....
T Consensus 23 g~~~f~~lf~~~P~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~l-~~~~~l~~~l~~lg~~H~~~~v~~~~ 101 (140)
T cd01040 23 GLEFYERLFKAHPETRALFSRFGGLSAALKGSPKFKAHGKRVLNALDEAIKNL-DDLEALKALLAKLGRKHAKRGVDPEH 101 (140)
T ss_pred HHHHHHHHHHHChhHHHHhHHhCCchHhHccCHHHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHHHHhCCCHHH
Confidence 45667777777765444433211100 00000122233344555555555553 44455788888888877788889999
Q ss_pred HHHHHHHHHHhhhhhc-------cHHHHHHHH
Q 023619 239 WLATSHAINTAVKEIG-------DFENWMKTM 263 (280)
Q Consensus 239 Wl~lvd~fn~aLKEIG-------DVENWAk~I 263 (280)
|..+.+.+-..|++.+ ..+-|.+.+
T Consensus 102 ~~~~~~~l~~~l~~~~~~~~~~~~~~aW~~~~ 133 (140)
T cd01040 102 FKLFGEALLEVLAEVLGDDFTPEVKAAWDKLL 133 (140)
T ss_pred HHHHHHHHHHHHHHHhCCcCCHHHHHHHHHHH
Confidence 9999999999998864 344666654
No 82
>PRK00846 hypothetical protein; Provisional
Probab=26.85 E-value=3.3e+02 Score=21.68 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q 023619 174 SSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAA 227 (280)
Q Consensus 174 kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ 227 (280)
.|..+|.+.-..|-+.+.+--+.-+..++.||.-|.+- |+.|+.-.++|+.
T Consensus 2 ~~~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~q---q~~I~~L~~ql~~ 52 (77)
T PRK00846 2 EQLSLRDQALEARLVELETRLSFQEQALTELSEALADA---RLTGARNAELIRH 52 (77)
T ss_pred chhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 35666767777888888888888889999999877763 4455544444443
No 83
>KOG2962 consensus Prohibitin-related membrane protease subunits [General function prediction only]
Probab=26.52 E-value=4.3e+02 Score=25.89 Aligned_cols=50 Identities=18% Similarity=0.222 Sum_probs=34.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 023619 173 HSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAK 231 (280)
Q Consensus 173 ~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttak 231 (280)
++|.....+.|..|+.|+--+ .-|..|+.++--||-.|+|..........
T Consensus 198 ekQkVvEKeAETerkkAviEA---------EK~AqVa~I~~qqkl~EKetekr~~eiE~ 247 (322)
T KOG2962|consen 198 EKQKVVEKEAETERKKAVIEA---------EKNAQVAKILMQQKLMEKETEKRISEIED 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 356666667777777766443 44677888888899888887766655543
No 84
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=26.42 E-value=3.4e+02 Score=21.69 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHhhh-hhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc
Q 023619 192 HAKRVSDLLTDALN-GGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIG 254 (280)
Q Consensus 192 SA~aLTdaLVD~LN-~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIG 254 (280)
+..++.+.+.|.++ -.+-++|..++...+...+......+...+...|......+...+--++
T Consensus 175 ~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (275)
T PF00664_consen 175 ANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYLS 238 (275)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566554 4567788888888888887777777777777777777777776665443
No 85
>KOG3068 consensus mRNA splicing factor [RNA processing and modification]
Probab=26.36 E-value=49 Score=31.81 Aligned_cols=52 Identities=38% Similarity=0.700 Sum_probs=38.1
Q ss_pred HHHHhcCccccccCCCchhhhhhhcccCccccc------eecccccCC--CCCCCCCCCCcc
Q 023619 84 LIQRLGGLTENYRGLKPKFQEEKGRKTGKSKGI------LKIPERKTM--SSPPQVPPASTR 137 (280)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~~~~~~~ 137 (280)
-|.-|||. ||+-.+||.-+..|+-+|++.|. ..+|.-+.. .||+|+|+-+.|
T Consensus 91 rI~elGG~--~y~k~~~Kmld~eg~ev~~~rGyrYFGaAkdLPgVrElFEk~~~~~~~rk~r 150 (268)
T KOG3068|consen 91 RIRELGGP--NYRKYKAKMLDDEGREVPNIRGYRYFGAAKDLPGVRELFEKSPEQPPPRKTR 150 (268)
T ss_pred HHHHhcCc--chhhhhhhhhhhhcccCCCCCcchhhhhhccCccHHHHHhcCccCCCccchH
Confidence 36679997 89999999999999999998884 345654432 466666664443
No 86
>PRK14162 heat shock protein GrpE; Provisional
Probab=26.36 E-value=5e+02 Score=23.63 Aligned_cols=61 Identities=11% Similarity=0.029 Sum_probs=35.7
Q ss_pred HHhH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc---cHHHHHHHHHHHHHHHHHHH
Q 023619 212 YVIE-KRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIG---DFENWMKTMDLDCKSINAAI 274 (280)
Q Consensus 212 y~NQ-KrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIG---DVENWAk~IE~Dmk~IeeaL 274 (280)
|.|- +|.++|...+...+ ..+-...++-++|+|..||.-.. ++.++.+-|+-=.+.+..+|
T Consensus 69 feN~rkR~~kE~e~~~~~a--~~~~~~~LLpV~DnLerAl~~~~~~~~~~~l~~Gvemi~k~l~~vL 133 (194)
T PRK14162 69 IQNMQNRYAKERAQLIKYE--SQSLAKDVLPAMDNLERALAVKADDEAAKQLKKGVQMTLDHLVKAL 133 (194)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Confidence 4554 45555555444433 45667889999999999997543 23445444444444444444
No 87
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=25.96 E-value=7.7e+02 Score=25.69 Aligned_cols=50 Identities=22% Similarity=0.183 Sum_probs=32.5
Q ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHh--HHHH----HHHHHHHHHhhhhhccH
Q 023619 207 GVQESYVIEKRIELEIRTLAATIAKFMKQ--TDQW----LATSHAINTAVKEIGDF 256 (280)
Q Consensus 207 GVaqAy~NQKrIE~EaKeL~~ttakfaKQ--T~QW----l~lvd~fn~aLKEIGDV 256 (280)
.|..+-.-+-+.-.|+++|+.+.+.|..- +.+| ....+.++.++|.+|+=
T Consensus 84 ~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~e~la~~~~~l~~~ 139 (459)
T KOG0288|consen 84 DVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIAERLAEALKDLGLK 139 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHhhhcchh
Confidence 34445555666777888888888877542 3344 35667777777777653
No 88
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.90 E-value=9.9e+02 Score=27.59 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=6.5
Q ss_pred CCCCCCCCCccccccc
Q 023619 127 SPPQVPPASTRVQATA 142 (280)
Q Consensus 127 ~~~~~~~~~~~~~~~~ 142 (280)
.|||--++.++..+|.
T Consensus 189 lpPq~tpaqtPl~sP~ 204 (1243)
T KOG0971|consen 189 LPPQETPAQTPLASPI 204 (1243)
T ss_pred CCCccCCCCCCccCCC
Confidence 3455333333333444
No 89
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=25.69 E-value=3.8e+02 Score=22.05 Aligned_cols=65 Identities=11% Similarity=0.158 Sum_probs=42.1
Q ss_pred HHHHHhHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhc---cHHHHHHHHHHHHHHHHHHHH
Q 023619 209 QESYVIEKRI-ELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIG---DFENWMKTMDLDCKSINAAIR 275 (280)
Q Consensus 209 aqAy~NQKrI-E~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIG---DVENWAk~IE~Dmk~IeeaLe 275 (280)
+.-|.|.++. ++|....... ...+....++.++|+|..++.-.. ++++|.+-++.=...+...|+
T Consensus 12 ~ae~~N~rkr~~~e~~~~~~~--~~~~~~~~ll~v~D~le~a~~~~~~~~~~~~~~~g~~~i~~~l~~~L~ 80 (137)
T cd00446 12 LAEFENYRKRTEREREEARKY--AIEKFAKDLLPVLDNLERALEAAKKEEELKNLVEGVEMTLKQLLDVLE 80 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3345555544 3333333333 677888999999999999998664 467888766655555555443
No 90
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=25.61 E-value=1.7e+02 Score=26.51 Aligned_cols=30 Identities=7% Similarity=0.305 Sum_probs=21.3
Q ss_pred hhhhHHHHHHhhhchhHHHHHHHhcCcccc
Q 023619 65 MHPTILETVLRWSISEEVYLIQRLGGLTEN 94 (280)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (280)
.|..+.+.+++|..+-.+-.|=-|||+.-.
T Consensus 91 ~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~ 120 (238)
T TIGR00161 91 VVYDMTNAIVEWMVRNNSRELISFNGMVVR 120 (238)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeCccCC
Confidence 355778889999877666666667887654
No 91
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=25.31 E-value=2.9e+02 Score=25.86 Aligned_cols=45 Identities=18% Similarity=0.138 Sum_probs=24.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 023619 208 VQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKE 252 (280)
Q Consensus 208 VaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKE 252 (280)
...-|.+.+.+..|.++|+++.+.+..+..+-...+..=|..||+
T Consensus 61 ~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 61 ISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777777777777766644433322223333444444
No 92
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=25.29 E-value=3.9e+02 Score=22.04 Aligned_cols=52 Identities=19% Similarity=0.364 Sum_probs=41.0
Q ss_pred HhHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHH-HHHHHHH
Q 023619 213 VIEKRIELE-IRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFE-NWMKTMD 264 (280)
Q Consensus 213 ~NQKrIE~E-aKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVE-NWAk~IE 264 (280)
+++|+.|.+ .++|+..++.+..|.+.-..-++.++++-.-+++|= ||-.++.
T Consensus 6 i~eKk~ELe~L~~l~~lS~~L~~qle~L~~kl~~m~dg~e~Va~Vl~NW~nV~r 59 (103)
T PF08654_consen 6 IAEKKAELEALKQLRDLSADLASQLEALSEKLETMADGAEAVASVLANWQNVFR 59 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhHHHHHH
Confidence 455666654 478888999999999888888888888888888874 9987654
No 93
>COG3452 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=25.13 E-value=1.5e+02 Score=29.07 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 023619 177 KLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIE 219 (280)
Q Consensus 177 ~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE 219 (280)
-+++.+|+.|..+.+.++.+-..|+..+|+.++.+----+++|
T Consensus 39 ~~~~~qe~lrq~v~~~l~~ir~qLE~qlNg~I~~vkgl~~~~e 81 (297)
T COG3452 39 LRRVSQERLRQLVKQQLNIIRTQLETQLNGNIQLVKGLGKHWE 81 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhee
Confidence 4577899999999999999999999999999998754444444
No 94
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=24.97 E-value=7.4e+02 Score=25.19 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=40.1
Q ss_pred HHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 197 SDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 197 TdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
+..=+.-|-..|+.+-.-|.+||.|.-++.. ++...-...+...|.||..||-+
T Consensus 219 tt~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee---~hq~kKrk~~estdsf~~eLKr~ 272 (410)
T KOG4715|consen 219 TTARMQVLKRQVQSLMVHQRKLEAELLQIEE---RHQEKKRKFLESTDSFNNELKRL 272 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccHHHHHHHHHh
Confidence 4444555666788889999999999877665 34444456788899999999976
No 95
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=24.76 E-value=2.2e+02 Score=22.80 Aligned_cols=41 Identities=7% Similarity=0.187 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHH
Q 023619 218 IELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFEN 258 (280)
Q Consensus 218 IE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVEN 258 (280)
+..+..+|+.....+.++...|......++.++..|..+.+
T Consensus 4 l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~ 44 (129)
T cd00584 4 LAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKK 44 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44455556666666666666666666666666666655543
No 96
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=24.41 E-value=3.3e+02 Score=23.61 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 023619 191 RHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTD 237 (280)
Q Consensus 191 aSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~ 237 (280)
.|+..++++-++.+...=.+-|-|++.++.--+.|...-+.+.....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~ 56 (151)
T PRK10778 10 SSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVD 56 (151)
T ss_pred ccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999998888888999988877766666655555554443
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=24.27 E-value=8.6e+02 Score=25.66 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHH
Q 023619 193 AKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTM 263 (280)
Q Consensus 193 A~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~I 263 (280)
.+.++..|.-+-..-=..+|-|.| =|.-+|..-...+.+-.-..+-...++.--...+||-|+|+|....
T Consensus 521 iN~l~gkL~RtF~v~dElifrdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEirdLe~qI~~e 590 (594)
T PF05667_consen 521 INSLTGKLDRTFTVTDELIFRDAK-KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRDLEEQIDTE 590 (594)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344444444444444445777777 4557788888888888888889999999999999999999887654
No 98
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=24.07 E-value=5.5e+02 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=20.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhH
Q 023619 211 SYVIEKRIELEIRTLAATIAKFMKQT 236 (280)
Q Consensus 211 Ay~NQKrIE~EaKeL~~ttakfaKQT 236 (280)
...+...|+++.++|......+.++.
T Consensus 183 ~~~~aq~L~~k~r~l~~~~~~~~~~~ 208 (247)
T PF14661_consen 183 YQEFAQLLRKKYRELSAECAELQAQL 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66667778888888888888887777
No 99
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=24.07 E-value=1.1e+03 Score=26.97 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=65.3
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAK-------RDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKF 232 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaR-------kEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakf 232 (280)
+..-|+.+=+...+.|...+-.++--+ .+.+....+=-.+|++.+...|+++-.+--.+-.+..+|+...+.|
T Consensus 518 lr~~l~eLEqr~~qQqsa~~Ll~~f~kr~~~~l~ae~lE~~~~e~eal~E~ls~~~s~~~EqR~~lRq~~e~L~~~~~~~ 597 (1480)
T COG3096 518 LRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQEQLQSRIQSL 597 (1480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444443333111 3445555666678999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHH
Q 023619 233 MKQTDQWLATSHAINT 248 (280)
Q Consensus 233 aKQT~QWl~lvd~fn~ 248 (280)
.+..--|++.-+.+.+
T Consensus 598 ~~~AP~Wl~Aq~ALe~ 613 (1480)
T COG3096 598 MQRAPVWLAAQNALEQ 613 (1480)
T ss_pred HhhccHHHHHHHHHHH
Confidence 9999999998777654
No 100
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.98 E-value=4.7e+02 Score=22.51 Aligned_cols=16 Identities=38% Similarity=0.303 Sum_probs=10.0
Q ss_pred hHHhhhhhhHHHHHhh
Q 023619 32 ELLALVLPFEIAFSIL 47 (280)
Q Consensus 32 ~~~~~~~~~~~~~~~~ 47 (280)
-+++.+|+.|+++.++
T Consensus 6 ~lvf~~L~~Ei~~~~l 21 (192)
T PF05529_consen 6 SLVFGLLYAEIAVLLL 21 (192)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777766543
No 101
>PRK14139 heat shock protein GrpE; Provisional
Probab=23.42 E-value=5.6e+02 Score=23.16 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=35.6
Q ss_pred HHHHHhH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh-ccHHHHHHHHHHHHHHHHHH
Q 023619 209 QESYVIE-KRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI-GDFENWMKTMDLDCKSINAA 273 (280)
Q Consensus 209 aqAy~NQ-KrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI-GDVENWAk~IE~Dmk~Ieea 273 (280)
..=|.|- ||.++|..++...+ ..+-...++-++|+|..+|.-. .|+.++.+-|+-=.+.+..+
T Consensus 59 ~AefeN~rKR~~kE~e~~~~~a--~~~~~~~LLpv~DnLerAl~~~~~~~~~l~~Gv~mi~k~l~~v 123 (185)
T PRK14139 59 KAETENVRRRAQEDVAKAHKFA--IESFAESLLPVKDSLEAALADESGDLEKLREGVELTLKQLTSA 123 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHhHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 3334554 45555555554432 3355668999999999999654 33445544444333333333
No 102
>PF14755 ER-remodelling: Intracellular membrane remodeller
Probab=23.35 E-value=2.4e+02 Score=25.14 Aligned_cols=70 Identities=27% Similarity=0.362 Sum_probs=40.4
Q ss_pred CCCCCCCCCC--CCcccccccccccccccccccccccchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023619 124 TMSSPPQVPP--ASTRVQATAETEKAQADTTAAAAAGGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLT 201 (280)
Q Consensus 124 ~~~~~~~~~~--~~~~~~~~~e~~~~~~~tt~~t~~~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLV 201 (280)
+-++|.|.|. .|+|.+.. ++++...+++.++++. -.-+.. ...-...|+-|.|.+.-+..++|.||
T Consensus 68 akpsp~qAPtPaPRtr~q~a---~~~E~~a~~a~ap~sa--------p~wrv~-ktv~~~a~r~~~elv~rar~~gd~l~ 135 (148)
T PF14755_consen 68 AKPSPAQAPTPAPRTRPQSA---PPQEPPAGTAAAPDSA--------PKWRVA-KTVYSSAERFRTELVHRARSVGDVLV 135 (148)
T ss_pred ccCCCcCCCCCCCCCCcCCC---CCCCCccchhcCCCcc--------cchhhh-HHHHhhHHHHHHHHHHHHHHhhHHHH
Confidence 4567777654 56666554 4444444444444421 011111 11122467888999999999999999
Q ss_pred Hhhh
Q 023619 202 DALN 205 (280)
Q Consensus 202 D~LN 205 (280)
..|-
T Consensus 136 qalp 139 (148)
T PF14755_consen 136 QALP 139 (148)
T ss_pred Hhcc
Confidence 8763
No 103
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=22.95 E-value=9.5e+02 Score=25.70 Aligned_cols=70 Identities=6% Similarity=0.050 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 184 RAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 184 kaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
+...+.-..-..+...+.+.+...|-.++.+-..+....++.+.......+...+-.....+++++|.++
T Consensus 210 ~v~~~L~~~~~~lg~~i~~~l~~~~~~~L~~i~~l~~~~~~~~~~L~~v~~~~~~L~~~~~qL~~~L~~v 279 (806)
T PF05478_consen 210 HVSSDLDNIGSLLGGDIQDQLGSNVYPALDSILDLAQAMQETKELLQNVNSSLKDLQEYQSQLRDGLRGV 279 (806)
T ss_pred HHHHHHHhccchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344445566666666666667666666666777777777777777777777777777766554
No 104
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=22.88 E-value=3.8e+02 Score=28.12 Aligned_cols=47 Identities=21% Similarity=0.101 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q 023619 181 QTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAA 227 (280)
Q Consensus 181 eqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ 227 (280)
-.|--|++++--+-...+.+.|.||-|=+.++...+.||.+.|.=+.
T Consensus 59 yGesvKqAVilNVlG~~d~~pDPLsPgE~~l~~Kl~eLE~e~k~d~v 105 (508)
T PF00901_consen 59 YGESVKQAVILNVLGTGDEPPDPLSPGEQGLQRKLKELEDEQKEDEV 105 (508)
T ss_pred hHHHHHHHHHHHhccCCCCCCCCCCHhHHHHHHHHHHHHHHHhhHHH
Confidence 45667888888888888999999999999999999999998876543
No 105
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=22.84 E-value=2.9e+02 Score=21.92 Aligned_cols=47 Identities=30% Similarity=0.337 Sum_probs=24.2
Q ss_pred hHHHHHHhHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHhhhhhc
Q 023619 207 GVQESYVIEKRIELEIRTLAAT-IAKFMKQTDQWLATSHAINTAVKEIG 254 (280)
Q Consensus 207 GVaqAy~NQKrIE~EaKeL~~t-takfaKQT~QWl~lvd~fn~aLKEIG 254 (280)
.++++-.....++++..++... ...-.+....++.+++.-|. +|++|
T Consensus 8 ~~~~L~~~~~~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNe-iKD~g 55 (83)
T PF07061_consen 8 EIQELKEQIEQLEKEISELEAELIEDPEKIVKRHIKLLHEYNE-IKDIG 55 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhH-HHHHH
Confidence 3344444444555555555444 33444556666777666653 34443
No 106
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.79 E-value=5.9e+02 Score=23.54 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=44.4
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023619 162 ASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFM 233 (280)
Q Consensus 162 smLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfa 233 (280)
+.|.+++..|...+..+-.+.+..+.| |+.|++.|.+.=.....+..+.|++-....+..
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~e------------v~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSD------------IDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH------------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888888888 777787777766666666666666665555543
No 107
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=22.62 E-value=4.2e+02 Score=21.50 Aligned_cols=65 Identities=14% Similarity=0.193 Sum_probs=44.0
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH---HHHhhhhhccHHHHHHHHH
Q 023619 198 DLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHA---INTAVKEIGDFENWMKTMD 264 (280)
Q Consensus 198 daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~---fn~aLKEIGDVENWAk~IE 264 (280)
-.|.++|-..|++|-....-|..|+.+|...-..+....++-..--+. =|+-|| .+-.+|-..+-
T Consensus 3 ~EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk--~E~~~WqerLr 70 (79)
T PRK15422 3 LEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK--EQQNGWQERLQ 70 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 346788888888888888888888888888877777766654433222 233333 35557766653
No 108
>PHA02926 zinc finger-like protein; Provisional
Probab=22.55 E-value=53 Score=31.25 Aligned_cols=19 Identities=26% Similarity=0.763 Sum_probs=15.8
Q ss_pred hchhhhHHHH-HHhhhchhHH
Q 023619 63 SYMHPTILET-VLRWSISEEV 82 (280)
Q Consensus 63 ~~~~~~~~~~-~~~~~~~~~~ 82 (280)
-|.||.+|.- ||.| ||+|.
T Consensus 101 ~~iH~~ll~~~vl~W-is~~~ 120 (242)
T PHA02926 101 LYIHYNLVINVVIDW-ITDVI 120 (242)
T ss_pred EEecHHHHHHHHHHH-HHHHH
Confidence 4899999999 9999 66654
No 109
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=22.09 E-value=3.6e+02 Score=20.53 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=43.8
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHH--------HHHhHHHHHHHHHHHHHhhhhhccHHH
Q 023619 198 DLLTDALNGGVQESYVIEKRIELEIRTLAATIAK--------FMKQTDQWLATSHAINTAVKEIGDFEN 258 (280)
Q Consensus 198 daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttak--------faKQT~QWl~lvd~fn~aLKEIGDVEN 258 (280)
..+-+.+|.-+.++-...+.|....|.|...... ..-+..|..++...|..++.+.-++|.
T Consensus 42 ~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~ 110 (117)
T smart00503 42 KELREKLERLIDDIKRLAKEIRAKLKELEKENLENRASGSASDRTRKAQTEKLRKKFKEVMNEFQRLQR 110 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777777777776653 234467888888888888888777663
No 110
>PRK14139 heat shock protein GrpE; Provisional
Probab=21.83 E-value=3e+02 Score=24.84 Aligned_cols=13 Identities=23% Similarity=0.225 Sum_probs=5.3
Q ss_pred ccHHHHHHHHHHH
Q 023619 254 GDFENWMKTMDLD 266 (280)
Q Consensus 254 GDVENWAk~IE~D 266 (280)
-|++|.-+.+++|
T Consensus 60 AefeN~rKR~~kE 72 (185)
T PRK14139 60 AETENVRRRAQED 72 (185)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 111
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=21.71 E-value=5.1e+02 Score=22.10 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 023619 184 RAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQ 235 (280)
Q Consensus 184 kaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQ 235 (280)
+...+.......++..+.+.|-....+.+.+..++.+|++.++..+....|+
T Consensus 61 ~~s~~~a~~~~~~~~~ik~~v~~~~e~~q~~~~~l~~ei~~~~~~~sd~~k~ 112 (115)
T COG4980 61 KLSKESAETLKDQGGEIKESVKKWKEDIQPEIERLKSEIEDLQEAISDETKT 112 (115)
T ss_pred HHhHHHHHHHHHhhHHHHHHHHHhHhhcchhHHHHHHHHHHHHHHHHHHHhh
Confidence 5666667777777788888888888888888888888888888777766654
No 112
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=21.59 E-value=4.6e+02 Score=24.24 Aligned_cols=54 Identities=6% Similarity=0.133 Sum_probs=23.9
Q ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHhhhhhccHH
Q 023619 204 LNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSH-AINTAVKEIGDFE 257 (280)
Q Consensus 204 LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd-~fn~aLKEIGDVE 257 (280)
+.....+++...-++-..-|+|...+..|++........-+ .+..+|-.+||++
T Consensus 36 l~~~Lk~~~~~~~~lv~~rkela~~~~~fs~al~~L~~~E~t~L~~~ls~lae~~ 90 (219)
T cd07621 36 YHNRIKDATAKADKMTRKHKDVADSYIKISAALTQLATSEPTPLDKFLLKVAETF 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 33333444444444444445555555555555444433221 2344444555554
No 113
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.48 E-value=6.7e+02 Score=23.39 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=75.6
Q ss_pred cccccchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 023619 154 AAAAGGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFM 233 (280)
Q Consensus 154 ~t~~~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfa 233 (280)
...+|.|+.....+-+++........+.. .| |.++..|+++|.+.=...+. .|.|..-=..-.++|..+-.+|.
T Consensus 56 ~~~ggdLe~~Y~~ln~~ye~s~~~A~~V~--~R---I~~vE~Va~ALF~EWe~EL~-~Y~~~sLR~~S~~kL~~tr~~Y~ 129 (201)
T PF11172_consen 56 NFDGGDLEDKYNALNDEYESSEDAAEEVS--DR---IDAVEDVADALFDEWEQELD-QYSNASLRRASEQKLAETRRRYA 129 (201)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHHHHHHHHHH
Confidence 34667799888888888886655444333 22 55778999999998877754 57777655555666766666666
Q ss_pred HhHHHHHHHHHHHHHhh----------------hhhccHHHHHHHHHHHHHHHHHHHH
Q 023619 234 KQTDQWLATSHAINTAV----------------KEIGDFENWMKTMDLDCKSINAAIR 275 (280)
Q Consensus 234 KQT~QWl~lvd~fn~aL----------------KEIGDVENWAk~IE~Dmk~IeeaLe 275 (280)
+-...-...-+.++-.| +-||-++.=...|+.|+..+-..|+
T Consensus 130 ~L~~aM~~Ae~km~PVL~~~~D~vL~LKHNLNA~AI~sL~~e~~~~~~di~~Li~~m~ 187 (201)
T PF11172_consen 130 QLIKAMRRAESKMQPVLAAFRDQVLYLKHNLNAQAIASLQGEFSSIESDISQLIKEME 187 (201)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444333322222221 2578888888888888777655554
No 114
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=21.26 E-value=4.4e+02 Score=21.16 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=44.1
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH---------HHhHHHHHHHHHHHHHhhhhhccHH
Q 023619 198 DLLTDALNGGVQESYVIEKRIELEIRTLAATIAKF---------MKQTDQWLATSHAINTAVKEIGDFE 257 (280)
Q Consensus 198 daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakf---------aKQT~QWl~lvd~fn~aLKEIGDVE 257 (280)
..+-+.|+.-+.+.-...+.|-...+.|......+ .-+..|+.++...|.+++.+..++|
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q 108 (151)
T cd00179 40 PELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQ 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666777777777776655433 3457899999999999999999988
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=21.12 E-value=9.2e+02 Score=25.56 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=42.4
Q ss_pred HHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Q 023619 198 DLLTDALNGGVQESYVIEKRIELEIRTLAATIAKF-------MKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSI 270 (280)
Q Consensus 198 daLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakf-------aKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~I 270 (280)
-.++|..+...+++-.+.+++..|.++|.....+- .+..+.|...++.++. |+--+.-|-+.||-|..-|
T Consensus 98 r~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA---e~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 98 RKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA---EINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh---HHHHHHHHHHHHHHHHHHH
Confidence 34677777788888888888888888887765544 2334444444333332 3334445666666665544
No 116
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=21.08 E-value=4.3e+02 Score=21.00 Aligned_cols=70 Identities=11% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHH
Q 023619 200 LTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINA 272 (280)
Q Consensus 200 LVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~Iee 272 (280)
|...+|..++.=|.. ++..+..|......+..+..+....+++++.-=+.+..+|.=+..++.=++.++.
T Consensus 25 LLe~mN~~~~~kY~~---~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~ 94 (99)
T PF10046_consen 25 LLENMNKATSLKYKK---MKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELES 94 (99)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444443332 2222333333333333333444444444444444444455555554444444443
No 117
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.06 E-value=7e+02 Score=23.48 Aligned_cols=76 Identities=11% Similarity=0.285 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQW 239 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QW 239 (280)
+.-++..++|-+.++|....+..|-. ++ --....+|+.++.+++..+
T Consensus 144 Y~~slk~vlK~RdqkQ~d~E~l~E~l---~~--------------------rre~~~kLe~~ie~~~~~v---------- 190 (240)
T cd07667 144 YSESMKNVLKKRDQVQAEYEAKLEAV---AL--------------------RKEERPKVPTDVEKCQDRV---------- 190 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HH--------------------HHHHHHHHHHHHHHHHHHH----------
Q ss_pred HHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHH
Q 023619 240 LATSHAINTAVKEIGDFENWMKTMDLDCKSINAAI 274 (280)
Q Consensus 240 l~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaL 274 (280)
+.||..+++ |++.|-+....||+..=..+
T Consensus 191 ----e~f~~~~~~--E~~~Fe~~K~~e~k~~l~~~ 219 (240)
T cd07667 191 ----ECFNADLKA--DMERWQNNKRQDFRQLLMGM 219 (240)
T ss_pred ----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
No 118
>PLN03223 Polycystin cation channel protein; Provisional
Probab=20.98 E-value=9.4e+02 Score=28.80 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-----HHHHHhhhhh--ccHHHHH
Q 023619 188 DSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATS-----HAINTAVKEI--GDFENWM 260 (280)
Q Consensus 188 EAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lv-----d~fn~aLKEI--GDVENWA 260 (280)
...+.+..--+.|.+-+|.|-.++-.-|.+++.-..+. +.||-.-..++- .+-.++|-|= --.|+-+
T Consensus 812 ~~~a~~~~~d~~~~~~i~~g~~d~~~~~~~~~~~~~~i------l~kq~~al~~~~~~~~~~~~~~~la~~~~~~~~~l~ 885 (1634)
T PLN03223 812 NQEAEAHHADNSLETLINAGFTDIKAGQAALEAKLDEI------LGKQQQALAAAQESLAIQQRTNGLAERQAAAIEKLA 885 (1634)
T ss_pred HHHHHhhcccchHHHHHHhchhHHHhHHHHHHhHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33445555667888999999988888888888765543 334433333322 2233344333 3467888
Q ss_pred HHHHHHHHHHHHH
Q 023619 261 KTMDLDCKSINAA 273 (280)
Q Consensus 261 k~IE~Dmk~Ieea 273 (280)
+.+|..+-.|..|
T Consensus 886 ~av~~q~~~i~~a 898 (1634)
T PLN03223 886 KAVEKQLSSIKSA 898 (1634)
T ss_pred HHHHHHHHHHHHH
Confidence 8899988888777
No 119
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.93 E-value=6.1e+02 Score=22.71 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=16.6
Q ss_pred cccchHHHHHHHHhhhhhhhhH
Q 023619 156 AAGGLEASLLQLIQNHQHSSLK 177 (280)
Q Consensus 156 ~~~~lesmLSsIlKEHq~kQa~ 177 (280)
++|++..++..|+.++..-...
T Consensus 54 e~gsl~~aw~~i~~e~e~~a~~ 75 (239)
T cd07647 54 EIGTLKSSWDSLRKETENVANA 75 (239)
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 4478999999999988754333
No 120
>PRK09793 methyl-accepting protein IV; Provisional
Probab=20.28 E-value=8.5e+02 Score=24.10 Aligned_cols=76 Identities=18% Similarity=0.176 Sum_probs=51.9
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHHHHHHHHH--HHHHHHHHHHHH
Q 023619 202 DALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFENWMKTMDL--DCKSINAAIRNI 277 (280)
Q Consensus 202 D~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVENWAk~IE~--Dmk~IeeaLe~v 277 (280)
+.+...+.+.-.|.......++.....+.+-.+...+-...++.+++..++|+++-+=-..|-. .|+.++.+||-+
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~I~~i~~~I~~IA~QTNLLALNAAIEAA 383 (533)
T PRK09793 306 EQLTATVGQNADNARQASELAKNAATTAQAGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAA 383 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666666666666666666666666667777777888888877776666665 577778887754
No 121
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.17 E-value=9.8e+02 Score=24.80 Aligned_cols=93 Identities=11% Similarity=0.169 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh-hhccHHHH
Q 023619 181 QTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVK-EIGDFENW 259 (280)
Q Consensus 181 eqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLK-EIGDVENW 259 (280)
..+..+...-..-.++++.+.+.=+.... -.|+..|+.-.+=|+.+...|.++.++--+--..-+..|+ +|-.+..=
T Consensus 103 ~l~~~~~~L~~~F~~LA~~ile~k~~~f~--~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~ 180 (475)
T PRK10361 103 QMINSEQRLSEQFENLANRIFEHSNRRVD--EQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQL 180 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566777777776665555 5688999999999999999999999876655444444444 34444555
Q ss_pred HHHHHHHHHHHHHHHH
Q 023619 260 MKTMDLDCKSINAAIR 275 (280)
Q Consensus 260 Ak~IE~Dmk~IeeaLe 275 (280)
...|-.|...++.||+
T Consensus 181 n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 181 NAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5788888888888885
Done!