Query 023619
Match_columns 280
No_of_seqs 91 out of 93
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 09:55:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023619.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023619hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2eqb_B RAB guanine nucleotide 89.8 4.6 0.00016 32.2 10.8 70 160-230 24-93 (97)
2 2ocy_A RAB guanine nucleotide 88.2 9.6 0.00033 32.4 12.4 86 160-253 56-141 (154)
3 4i0x_B ESAT-6-like protein MAB 86.2 4.1 0.00014 30.4 8.2 57 200-256 19-82 (103)
4 1s35_A Beta-I spectrin, spectr 75.7 28 0.00097 27.7 11.8 95 162-267 33-130 (214)
5 2e7s_A RAB guanine nucleotide 70.0 9.5 0.00032 31.9 6.1 86 160-253 44-129 (135)
6 2vs0_A Virulence factor ESXA; 69.5 27 0.00091 24.6 7.8 55 202-256 16-75 (97)
7 3gwk_C SAG1039, putative uncha 64.7 24 0.00081 25.3 6.7 54 203-256 19-77 (98)
8 3fav_B ESAT-6, 6 kDa early sec 64.2 19 0.00066 25.6 6.1 56 201-256 14-74 (94)
9 4ioe_A Secreted protein ESXB; 63.7 33 0.0011 24.1 7.3 49 206-254 23-76 (93)
10 3edv_A Spectrin beta chain, br 62.2 71 0.0024 26.9 13.7 95 163-268 146-243 (323)
11 3zbh_A ESXA; unknown function, 61.8 39 0.0013 23.8 8.3 54 203-256 20-78 (99)
12 1t3j_A Mitofusin 1; coiled coi 55.1 46 0.0016 26.4 7.2 44 215-258 49-92 (96)
13 3fav_A ESAT-6-like protein ESX 54.9 53 0.0018 23.8 7.2 52 205-256 20-76 (101)
14 3ghg_A Fibrinogen alpha chain; 54.2 1.3E+02 0.0046 30.3 11.9 93 159-252 50-142 (562)
15 1sjj_A Actinin; 3-helix bundle 53.7 1.7E+02 0.0058 28.6 13.5 95 162-268 404-509 (863)
16 1u5p_A Spectrin alpha chain, b 51.0 91 0.0031 24.7 12.8 100 158-266 32-131 (216)
17 3mq9_A Bone marrow stromal ant 49.8 1.3E+02 0.0046 27.2 10.5 21 65-85 285-306 (471)
18 3fb2_A Spectrin alpha chain, b 49.8 1E+02 0.0035 24.9 11.8 92 162-265 46-140 (218)
19 4i0x_A ESAT-6-like protein MAB 49.1 74 0.0025 23.1 7.3 48 209-256 17-69 (94)
20 3kbt_A Beta-I spectrin, spectr 48.2 1.2E+02 0.0042 25.4 14.4 99 158-265 33-131 (326)
21 3lbx_B Beta-I spectrin, spectr 46.5 1.1E+02 0.0037 24.3 13.0 90 166-267 41-133 (185)
22 1quu_A Human skeletal muscle a 46.0 1.3E+02 0.0043 24.9 12.9 95 158-264 44-149 (250)
23 3na7_A HP0958; flagellar bioge 45.9 1.4E+02 0.005 25.6 10.6 36 202-237 49-84 (256)
24 3ibp_A Chromosome partition pr 44.4 49 0.0017 31.0 6.7 54 199-253 3-56 (302)
25 3oja_B Anopheles plasmodium-re 43.4 2E+02 0.0069 26.5 11.8 37 217-253 527-563 (597)
26 4dvz_A Cytotoxicity-associated 41.9 2.8E+02 0.0094 27.7 12.0 52 217-270 504-558 (569)
27 3etw_A Adhesin A; antiparallel 37.4 1.7E+02 0.0057 23.9 11.7 43 155-197 2-44 (119)
28 3h6p_C ESAT-6-like protein ESX 36.7 82 0.0028 22.6 5.7 55 202-256 16-75 (96)
29 2dnx_A Syntaxin-12; snare, HAB 35.2 1.7E+02 0.0057 23.2 8.7 28 238-265 92-119 (130)
30 4dnd_A Syntaxin-10, SYN10; str 35.1 1E+02 0.0035 24.9 6.6 23 256-278 72-94 (130)
31 1cun_A Protein (alpha spectrin 33.6 1.7E+02 0.0059 22.9 14.1 93 161-265 32-127 (213)
32 3pdy_A Plectin; cytoskeleton, 31.8 2.1E+02 0.0072 23.3 11.5 97 156-267 32-128 (210)
33 2j69_A Bacterial dynamin-like 31.4 3.9E+02 0.013 26.3 14.1 54 191-244 337-390 (695)
34 3oja_A Leucine-rich immune mol 30.2 3.1E+02 0.011 24.9 9.8 34 219-252 441-474 (487)
35 2b5u_A Colicin E3; high resolu 30.0 62 0.0021 32.5 5.3 13 163-175 286-298 (551)
36 3pe0_A Plectin; cytoskeleton, 29.1 2.9E+02 0.01 24.2 13.9 94 164-269 43-139 (283)
37 2ykt_A Brain-specific angiogen 29.1 2.8E+02 0.0095 24.5 8.9 82 149-251 63-145 (253)
38 2x2e_A Dynamin-1; nitration, h 28.6 2.4E+02 0.0084 24.6 8.4 43 215-257 297-349 (353)
39 2fic_A Bridging integrator 1; 28.3 97 0.0033 25.9 5.6 42 211-252 57-98 (251)
40 1deq_A Fibrinogen (alpha chain 27.1 4.4E+02 0.015 25.5 14.5 90 160-250 54-143 (390)
41 1u4q_A Spectrin alpha chain, b 26.7 2.8E+02 0.0095 23.1 13.9 95 161-267 141-238 (322)
42 1vf6_A PALS-1, PALS1-associate 25.3 48 0.0016 26.0 2.8 35 236-275 2-36 (83)
43 2dfs_A Myosin-5A; myosin-V, in 25.0 4.3E+02 0.015 27.9 10.7 105 159-275 925-1029(1080)
44 2jee_A YIIU; FTSZ, septum, coi 25.0 2.4E+02 0.0081 21.7 9.4 69 197-265 4-73 (81)
45 4dac_A Computationally designe 24.4 40 0.0014 21.5 1.9 25 208-232 3-27 (28)
46 2akf_A Coronin-1A; coiled coil 24.1 1.6E+02 0.0054 19.4 4.9 26 217-242 3-28 (32)
47 3edv_A Spectrin beta chain, br 23.5 3.3E+02 0.011 22.8 11.8 38 163-204 40-77 (323)
48 2yny_A General control protein 22.9 1.8E+02 0.0061 23.5 5.9 39 195-234 66-104 (106)
49 2zvf_A Alanyl-tRNA synthetase; 22.3 2.3E+02 0.0077 22.4 6.4 29 203-231 29-57 (171)
50 4dvy_P Cytotoxicity-associated 21.5 5.4E+02 0.018 26.8 10.2 53 217-271 764-819 (876)
51 4ioe_A Secreted protein ESXB; 21.3 2.1E+02 0.0073 19.8 9.6 23 231-253 60-82 (93)
52 3dyt_A Sorting nexin-9; 3-heli 21.2 4.5E+02 0.016 23.6 10.2 31 245-275 230-265 (366)
No 1
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.80 E-value=4.6 Score=32.23 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=54.8
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIA 230 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~tta 230 (280)
++..+..+..+... ...+|...|..+..+-.-+..||.+|.+..|.-|+.+-.=+..++...++|+.+..
T Consensus 24 ~~~e~~~L~~~l~e-E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 24 RDDEVKRLREDIAK-ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55566666666654 44556688888889999999999999999999999997777777777777777654
No 2
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.24 E-value=9.6 Score=32.39 Aligned_cols=86 Identities=12% Similarity=0.122 Sum_probs=60.3
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQW 239 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QW 239 (280)
.+..+..+..+... ...+|...|..+..+-.-+..||.+|.+-.|.-|+++-.=+.. +......+.+|...=
T Consensus 56 ~~~e~~~L~~~l~~-E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~-------~e~r~~~L~~ql~e~ 127 (154)
T 2ocy_A 56 RDDEVKRLREDIAK-ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYA-------IEILNKRLTEQLREK 127 (154)
T ss_dssp HHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 45566666666654 4445667888888899999999999999999999987333333 344444555666666
Q ss_pred HHHHHHHHHhhhhh
Q 023619 240 LATSHAINTAVKEI 253 (280)
Q Consensus 240 l~lvd~fn~aLKEI 253 (280)
..+++.++..|++|
T Consensus 128 ~~~l~~lq~ql~~L 141 (154)
T 2ocy_A 128 DTLLDTLTLQLKNL 141 (154)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777766655
No 3
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=86.19 E-value=4.1 Score=30.42 Aligned_cols=57 Identities=11% Similarity=0.219 Sum_probs=45.7
Q ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHH-------HHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 200 LTDALNGGVQESYVIEKRIELEIRTLAAT-------IAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 200 LVD~LN~GVaqAy~NQKrIE~EaKeL~~t-------takfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
..+.++..+.++-.....|+.+...|+.. ...|.-.-.+|...+..++.+|.+|+..
T Consensus 19 ~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~ 82 (103)
T 4i0x_B 19 VTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEA 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666677788888888877 6789999999999999999999998764
No 4
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=75.75 E-value=28 Score=27.68 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=53.0
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 023619 162 ASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLA 241 (280)
Q Consensus 162 smLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~ 241 (280)
+....+++.|+.-+.... .+.+-+.++...+..|+..-. |.+...|......|......|.+.+.+...
T Consensus 33 ~~v~~ll~~h~~~~~ei~-----~~~~~~~~~~~~g~~L~~~~~------~~~~~~i~~~l~~L~~~w~~L~~~~~~r~~ 101 (214)
T 1s35_A 33 PEAEQLLQQHAGIKDEID-----GHQDSYQRVKESGEKVIQGQT------DPEYLLLGQRLEGLDTGWDALGRMWESRSH 101 (214)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTCC------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HhhHHHHHHHHHHHHHHhcCC------CccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788999987665443 344555666666776665411 223445555555555555555544443333
Q ss_pred HHH---HHHHhhhhhccHHHHHHHHHHHH
Q 023619 242 TSH---AINTAVKEIGDFENWMKTMDLDC 267 (280)
Q Consensus 242 lvd---~fn~aLKEIGDVENWAk~IE~Dm 267 (280)
-++ .+..-.++.-++++|....|..+
T Consensus 102 ~L~~~l~l~~F~~~~~~~~~Wl~~~E~~l 130 (214)
T 1s35_A 102 TLAQCLGFQEFQKDAKQAEAILSNQEYTL 130 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 33444455666778877766544
No 5
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=69.96 E-value=9.5 Score=31.94 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=50.4
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQW 239 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QW 239 (280)
++..+..+..+... ...+|...|..++.+=.-+..||.+|.+..|.-|+.+-.-+..++... ..+..|...=
T Consensus 44 ~~~e~~~L~~~l~e-E~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~-------~~L~~ql~e~ 115 (135)
T 2e7s_A 44 RDDEVKRLREDIAK-ENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILN-------KRLTEQLREK 115 (135)
T ss_dssp HHHHHHTHHHHHHH-TTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH-------HHHHHTTTHH
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 44445555555553 334556778888888899999999999999999999844433444433 3444454444
Q ss_pred HHHHHHHHHhhhhh
Q 023619 240 LATSHAINTAVKEI 253 (280)
Q Consensus 240 l~lvd~fn~aLKEI 253 (280)
..+++.++..|+++
T Consensus 116 e~ll~~lq~QL~~L 129 (135)
T 2e7s_A 116 DMLLDTLTLQLKNL 129 (135)
T ss_dssp HHCC----------
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555554
No 6
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=69.46 E-value=27 Score=24.60 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=39.1
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 202 DALNGGVQESYVIEKRIELEIRTLAAT-----IAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 202 D~LN~GVaqAy~NQKrIE~EaKeL~~t-----takfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
..++....++-.....|+.+...|... ...|..+-.+|...+.+++..|.+|++.
T Consensus 16 ~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 75 (97)
T 2vs0_A 16 QSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQ 75 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555556666777777654 4678888889999999999999888754
No 7
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=64.66 E-value=24 Score=25.35 Aligned_cols=54 Identities=11% Similarity=0.145 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 203 ALNGGVQESYVIEKRIELEIRTLAAT-----IAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 203 ~LN~GVaqAy~NQKrIE~EaKeL~~t-----takfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
.++....++-.....|..+...|... ...|..+-.+|...++++.+.|.+|+..
T Consensus 19 ~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~ 77 (98)
T 3gwk_C 19 KYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQ 77 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555556666667777654 3578888889999999999999887653
No 8
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=64.20 E-value=19 Score=25.64 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=39.3
Q ss_pred HHhhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 201 TDALNGGVQESYVIEKRIELEIRTLAAT-----IAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 201 VD~LN~GVaqAy~NQKrIE~EaKeL~~t-----takfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
.+.++....++-.....|+.+...|... ...|.-+-.+|...+..++..|.+|++.
T Consensus 14 a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~ 74 (94)
T 3fav_B 14 ASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLART 74 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666666666543 3578888899999999999999998764
No 9
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=63.70 E-value=33 Score=24.14 Aligned_cols=49 Identities=24% Similarity=0.176 Sum_probs=26.2
Q ss_pred hhHHHHHHhHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHHHHHHHhhhhhc
Q 023619 206 GGVQESYVIEKRIELEIRTLA-----ATIAKFMKQTDQWLATSHAINTAVKEIG 254 (280)
Q Consensus 206 ~GVaqAy~NQKrIE~EaKeL~-----~ttakfaKQT~QWl~lvd~fn~aLKEIG 254 (280)
....++-.....|..+...|. .....|.-+-++|...+.++.+.|.+|+
T Consensus 23 ~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~ 76 (93)
T 4ioe_A 23 NAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYIPILEGIS 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444555555553 2344566666666666666666665554
No 10
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=62.16 E-value=71 Score=26.94 Aligned_cols=95 Identities=12% Similarity=0.103 Sum_probs=59.5
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023619 163 SLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLAT 242 (280)
Q Consensus 163 mLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~l 242 (280)
.+..+++.|..=+..+.. ...-+.++...++.|...... .....|.....+|......|...+.++..-
T Consensus 146 ~v~~l~~~h~~~~~~l~~-----~~~~v~~l~~~a~~L~~~~~~------~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~ 214 (323)
T 3edv_A 146 TVETLQRMHTTFEHDIQA-----LGTQVRQLQEDAARLQAAYAG------DKADDIQKRENEVLEAWKSLLDACESRRVR 214 (323)
T ss_dssp HHHHHHHHHHHHHHHTHH-----HHHHHHHHHHHHHHHHHHCCT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCc------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677778754444332 223455666666666553221 123567777777777777777777776655
Q ss_pred HHH---HHHhhhhhccHHHHHHHHHHHHH
Q 023619 243 SHA---INTAVKEIGDFENWMKTMDLDCK 268 (280)
Q Consensus 243 vd~---fn~aLKEIGDVENWAk~IE~Dmk 268 (280)
++. +..-+..+-|+.+|...++..+.
T Consensus 215 L~~~~~~~~F~~~~~~l~~Wl~~~~~~l~ 243 (323)
T 3edv_A 215 LVDTGDKFRFFSMVRDLMLWMEDVIRQIE 243 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 33445677888999999987665
No 11
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=61.81 E-value=39 Score=23.80 Aligned_cols=54 Identities=15% Similarity=0.185 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 203 ALNGGVQESYVIEKRIELEIRTLAAT-----IAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 203 ~LN~GVaqAy~NQKrIE~EaKeL~~t-----takfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
.++....++-.....|+.+...|... ...|..+-.+|...+.++.+.|.+|++.
T Consensus 20 ~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~ 78 (99)
T 3zbh_A 20 QYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQ 78 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444455555555555432 4678888888999999999888887653
No 12
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=55.05 E-value=46 Score=26.42 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhccHHH
Q 023619 215 EKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEIGDFEN 258 (280)
Q Consensus 215 QKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEIGDVEN 258 (280)
.+.++.|+++|...++.+-.....--.+-++++.-..|+.||++
T Consensus 49 ~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~ 92 (96)
T 1t3j_A 49 QKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSK 92 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888888888888888888888888888864
No 13
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=54.89 E-value=53 Score=23.83 Aligned_cols=52 Identities=8% Similarity=-0.001 Sum_probs=35.7
Q ss_pred hhhHHHHHHhHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 205 NGGVQESYVIEKRIELEIRTLAA-----TIAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 205 N~GVaqAy~NQKrIE~EaKeL~~-----ttakfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
.....++-.....|+.+...|.. ....|...-.+|...+.+++..|.+|++.
T Consensus 20 ~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~ 76 (101)
T 3fav_A 20 ERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTN 76 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555532 34688999999999999999999998764
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.24 E-value=1.3e+02 Score=30.29 Aligned_cols=93 Identities=9% Similarity=0.127 Sum_probs=64.0
Q ss_pred chHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 023619 159 GLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQ 238 (280)
Q Consensus 159 ~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~Q 238 (280)
.++.+|..-=++=..+-..+|.+.+.. ..--..+..+...+++.|...+.++-.|...+..=..+|+.+.+.+....+.
T Consensus 50 rLQglLdkqErDltkrINELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRINKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHHHHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 367766655555555566677666655 4555678888999999999999999999986666666777777766665554
Q ss_pred HHHHHHHHHHhhhh
Q 023619 239 WLATSHAINTAVKE 252 (280)
Q Consensus 239 Wl~lvd~fn~aLKE 252 (280)
=++.+..++..|.+
T Consensus 129 QlsnIrvLQsnLed 142 (562)
T 3ghg_A 129 KVQHIQLLQKNVRA 142 (562)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555555543
No 15
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=53.66 E-value=1.7e+02 Score=28.61 Aligned_cols=95 Identities=14% Similarity=0.194 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 023619 162 ASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLA 241 (280)
Q Consensus 162 smLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~ 241 (280)
+....+++.|+.=+..... +.+-+.++..+++.|.+.=.... ..|.....+|......+...+.+...
T Consensus 404 ~~v~~ll~kh~~f~~el~~-----~~~~v~~l~~~~~~L~~~~~~~~-------~~I~~~~~~l~~~W~~L~~~~~~R~~ 471 (863)
T 1sjj_A 404 SEIKALLKKHEAFESDLAA-----HQDRVEQIAAIAQELNELDYYDS-------PSVNARCQKICDQWDNLGALTQKRRE 471 (863)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHHHHTCCTTH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhCCcccH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777655444443 23445566667777765433333 33444444444444444444333333
Q ss_pred HHHHHHH-----------hhhhhccHHHHHHHHHHHHH
Q 023619 242 TSHAINT-----------AVKEIGDFENWMKTMDLDCK 268 (280)
Q Consensus 242 lvd~fn~-----------aLKEIGDVENWAk~IE~Dmk 268 (280)
.++.... -.+..-++.+|.+..|.++.
T Consensus 472 ~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~~~e~~l~ 509 (863)
T 1sjj_A 472 ALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQ 509 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3322221 22355678999999988875
No 16
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of spectrin, alpha-helical linker region, 3-helix coiled coil, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1
Probab=51.02 E-value=91 Score=24.73 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=52.0
Q ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 023619 158 GGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTD 237 (280)
Q Consensus 158 ~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~ 237 (280)
|+--.....+++.|+.-+.... .+.+-+.++...++.|...-......+......|...-..|...+..-.+...
T Consensus 32 g~dl~~v~~ll~kh~~le~~i~-----~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~L~~~~~~R~~~Le 106 (216)
T 1u5p_A 32 GKDLASVNNLLKKHQLLEADIS-----AHEDRLKDLNSQADSLMTSSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLN 106 (216)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTCSSSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444667788899985444333 34455667777777777543333333333344444444444444333333332
Q ss_pred HHHHHHHHHHHhhhhhccHHHHHHHHHHH
Q 023619 238 QWLATSHAINTAVKEIGDFENWMKTMDLD 266 (280)
Q Consensus 238 QWl~lvd~fn~aLKEIGDVENWAk~IE~D 266 (280)
+-.. +.+-..++-|+++|....|.-
T Consensus 107 ~~~~----l~qf~~~~~~~~~Wl~e~e~~ 131 (216)
T 1u5p_A 107 ESHR----LHQFFRDMDDEESWIKEKKLL 131 (216)
T ss_dssp HHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----HHHHHHHHHHHHhHHHHHHHH
Confidence 2222 233344566777887776643
No 17
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=49.78 E-value=1.3e+02 Score=27.19 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=15.4
Q ss_pred hhhhHHHHHHh-hhchhHHHHH
Q 023619 65 MHPTILETVLR-WSISEEVYLI 85 (280)
Q Consensus 65 ~~~~~~~~~~~-~~~~~~~~~~ 85 (280)
-||...-.+++ |-.|+|....
T Consensus 285 k~~eaA~~Fi~~~l~s~e~q~~ 306 (471)
T 3mq9_A 285 PNKELAKEFLENYLLTDEGLEA 306 (471)
T ss_dssp SCHHHHHHHHHHTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhcCHHHHHH
Confidence 47887778887 8888886543
No 18
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=49.76 E-value=1e+02 Score=24.89 Aligned_cols=92 Identities=14% Similarity=0.166 Sum_probs=46.5
Q ss_pred HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 023619 162 ASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLA 241 (280)
Q Consensus 162 smLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~ 241 (280)
+....++++|+.-+....+ +.+-+.++...++.|+..-... ...|.....+|......|.+.......
T Consensus 46 ~~ve~ll~~H~~l~~ei~~-----~~~~~~~~~~~G~~Ll~~~~~~-------~~~i~~~l~~L~~~w~~L~~~~~~R~~ 113 (218)
T 3fb2_A 46 TGAEALLERHQEHRTEIDA-----RAGTFQAFEQFGQQLLAHGHYA-------SPEIKQKLDILDQERADLEKAWVQRRM 113 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHTTCTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHHHHhCCCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899876655543 3345556666777776653322 223444444444444444433332222
Q ss_pred HHH---HHHHhhhhhccHHHHHHHHHH
Q 023619 242 TSH---AINTAVKEIGDFENWMKTMDL 265 (280)
Q Consensus 242 lvd---~fn~aLKEIGDVENWAk~IE~ 265 (280)
-++ .+..-.+++.++++|....|.
T Consensus 114 ~L~q~l~l~~F~~d~~~~~~WL~~~e~ 140 (218)
T 3fb2_A 114 MLDQCLELQLFHRDCEQAENWMAAREA 140 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 122333445556666665554
No 19
>4i0x_A ESAT-6-like protein MAB_3112; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=49.12 E-value=74 Score=23.15 Aligned_cols=48 Identities=8% Similarity=0.147 Sum_probs=34.2
Q ss_pred HHHHHhHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 209 QESYVIEKRIELEIRTLAA-----TIAKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 209 aqAy~NQKrIE~EaKeL~~-----ttakfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
.++-.....|+.....|.. ....|.-.-.+|..-+.+++.+|.+|++.
T Consensus 17 ~~i~~~l~~l~~~v~~l~~~W~G~Aa~af~~~~~~w~~~a~~l~~~L~~i~~~ 69 (94)
T 4i0x_A 17 DQMRAGSNSLDRDVQSLFGVWKGSAADAYRSGWDEMQDGATKVWNALTDIAST 69 (94)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455555555553 35688999999999999999999998764
No 20
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=48.24 E-value=1.2e+02 Score=25.44 Aligned_cols=99 Identities=10% Similarity=0.168 Sum_probs=49.2
Q ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 023619 158 GGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTD 237 (280)
Q Consensus 158 ~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~ 237 (280)
|.-..+...+++.|+.-+.... .+...+..+...+..|+..-+.....+-.-...|+..-..|...+..-.....
T Consensus 33 g~d~~~~~~ll~kh~~~~~el~-----~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~l~~l~~~w~~L~~~~~~R~~~Le 107 (326)
T 3kbt_A 33 PKDEEGAIVMLKRHLRQQRAVE-----DYGRNIKQLASRAQGLLSAGHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLE 107 (326)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566789999986544433 24456667777777777643322222222233333333333333332222222
Q ss_pred HHHHHHHHHHHhhhhhccHHHHHHHHHH
Q 023619 238 QWLATSHAINTAVKEIGDFENWMKTMDL 265 (280)
Q Consensus 238 QWl~lvd~fn~aLKEIGDVENWAk~IE~ 265 (280)
+-+ .+..-.+++.++.+|....|.
T Consensus 108 ~~l----~l~~f~~~~~~l~~Wl~~~e~ 131 (326)
T 3kbt_A 108 NMY----HLFQLKRETDDLEQWISEKEL 131 (326)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 222 223334556667777666554
No 21
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=46.46 E-value=1.1e+02 Score=24.33 Aligned_cols=90 Identities=9% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH---HHHH
Q 023619 166 QLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQ---WLAT 242 (280)
Q Consensus 166 sIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~Q---Wl~l 242 (280)
.+++.|+.-+... .++.+.+..+...++.|+..-.-.. ..|.....+|......|.+...+ ++.-
T Consensus 41 ~ll~~H~~~~~ei-----~~~~~~~~~l~~~G~~L~~~~~~~~-------~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~ 108 (185)
T 3lbx_B 41 LLMKYHQGINAEI-----ETRSKNFSACLELGESLLQRQHQAS-------EEIREKLQQVMSRRKEMNEKWEARWERLRM 108 (185)
T ss_dssp THHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHTTCTTH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----HhhhHHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677887655544 3355666777777888877644333 33444444444444444333221 1222
Q ss_pred HHHHHHhhhhhccHHHHHHHHHHHH
Q 023619 243 SHAINTAVKEIGDFENWMKTMDLDC 267 (280)
Q Consensus 243 vd~fn~aLKEIGDVENWAk~IE~Dm 267 (280)
.-.+..-.++.-++++|....|..+
T Consensus 109 ~l~l~~F~~d~~~~~~Wl~~~e~~L 133 (185)
T 3lbx_B 109 LLEVCQFSRDASVAEAWLIAQEPYL 133 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHhHhhh
Confidence 2223333456677788887777655
No 22
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=46.00 E-value=1.3e+02 Score=24.92 Aligned_cols=95 Identities=13% Similarity=0.187 Sum_probs=53.5
Q ss_pred cchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 023619 158 GGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTD 237 (280)
Q Consensus 158 ~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~ 237 (280)
|.--+....+++.|..=+..+.. +..-+.++...++.|++.=..+ ...|.....+|......+..-+.
T Consensus 44 g~dl~~v~~llkkh~~~~~el~~-----~~~~v~~l~~~~~~L~~~~~~~-------~~~I~~r~~~l~~~W~~L~~~~~ 111 (250)
T 1quu_A 44 SASLTEVRALLRKHEAFESDLAA-----HQDRVEQIAAIAQELNELDYHD-------AVNVNDRCQKICDQWDRLGTLTQ 111 (250)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHTTCTT-------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCcc-------hhHHHHHHHHHHHHHHHHHHHHH
Confidence 33346677889999866555543 3444566777777777653333 33444455555555555555555
Q ss_pred HHHHHHHHHH-----------HhhhhhccHHHHHHHHH
Q 023619 238 QWLATSHAIN-----------TAVKEIGDFENWMKTMD 264 (280)
Q Consensus 238 QWl~lvd~fn-----------~aLKEIGDVENWAk~IE 264 (280)
++..-++..- +--+++-|+++|....|
T Consensus 112 ~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e 149 (250)
T 1quu_A 112 KRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAM 149 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4444333322 22345567778876655
No 23
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=45.91 E-value=1.4e+02 Score=25.60 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=23.3
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHH
Q 023619 202 DALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTD 237 (280)
Q Consensus 202 D~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~ 237 (280)
..++..+.++=...++++.+..++.....++.++..
T Consensus 49 ~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 49 LNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666667777777777777777776643
No 24
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=44.38 E-value=49 Score=31.01 Aligned_cols=54 Identities=20% Similarity=0.359 Sum_probs=40.6
Q ss_pred HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 199 LLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 199 aLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
...+.+...++++-..-..+..+..+|.....+|.++..+|.++.+.++. |.|.
T Consensus 3 ~~~~~l~~~~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~r-L~eq 56 (302)
T 3ibp_A 3 HMIASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQ-LSEQ 56 (302)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH-HHHH
Confidence 35677888888888888889999999999999999999999999888775 4554
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=43.43 E-value=2e+02 Score=26.54 Aligned_cols=37 Identities=5% Similarity=-0.060 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh
Q 023619 217 RIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI 253 (280)
+.+.+..+..+....+.++..++...++...+.++|+
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l 563 (597)
T 3oja_B 527 ARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAEL 563 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHH
Confidence 3444444444555555556666666666666666554
No 26
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A {Helicobacter pylori}
Probab=41.88 E-value=2.8e+02 Score=27.67 Aligned_cols=52 Identities=17% Similarity=0.285 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHHHH
Q 023619 217 RIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI---GDFENWMKTMDLDCKSI 270 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI---GDVENWAk~IE~Dmk~I 270 (280)
+.+.-...|......+.++- +|..=++++|+++.|. |||-|--++|. |++..
T Consensus 504 kVgQAlsdLKnSkvgLsrnQ-ELtqKIdNLNQAVSEAKatgdFsnveQaid-dLKnS 558 (569)
T 4dvz_A 504 KVTQAKSDLENSVKDVIINQ-KVTDKVDNLNQAVSVAKAMGDFSRVEQVLA-DLKNF 558 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTCTHHHHHHHH-HHHHH
T ss_pred hhhhhhhHHHhhhhhhhhhH-HHHHHHHHHHHHHHHHhhcCChhHHHHHHH-HHHHh
Confidence 33444556777777776665 9999999999999884 99999999987 76654
No 27
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=37.40 E-value=1.7e+02 Score=23.88 Aligned_cols=43 Identities=12% Similarity=0.079 Sum_probs=23.9
Q ss_pred ccccchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023619 155 AAAGGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVS 197 (280)
Q Consensus 155 t~~~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLT 197 (280)
++++++++.|.+|-.+.+.-...-.+.-.+.+..|=.+...|+
T Consensus 2 ~~a~~i~~~l~~Leae~q~L~~~E~qry~~eka~AE~A~~~La 44 (119)
T 3etw_A 2 TDAASLVGELQALDAEYQNLANQEEARFNEERAQADAARQALA 44 (119)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556699999999888874433333333344444444444444
No 28
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=36.65 E-value=82 Score=22.63 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=33.7
Q ss_pred HhhhhhHHHHHHhHHHHHHHHHHHHHHH-----HHHHHhHHHHHHHHHHHHHhhhhhccH
Q 023619 202 DALNGGVQESYVIEKRIELEIRTLAATI-----AKFMKQTDQWLATSHAINTAVKEIGDF 256 (280)
Q Consensus 202 D~LN~GVaqAy~NQKrIE~EaKeL~~tt-----akfaKQT~QWl~lvd~fn~aLKEIGDV 256 (280)
..++....++-.....|+.+...|+... ..|.-.-.+|...++.++..|.+|+..
T Consensus 16 ~~i~~~~~~i~~~l~~l~~~v~~L~~~W~G~A~~ay~~~~~~W~~~~~~l~~~L~~i~~~ 75 (96)
T 3h6p_C 16 GDMAGYAGTLQSLGADIASEQAVLSSAWQGDTGITYQGWQTQWNQALEDLVRAYQSMSGT 75 (96)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHTGGGCCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444555555554332 356777899999999999999999764
No 29
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.22 E-value=1.7e+02 Score=23.17 Aligned_cols=28 Identities=7% Similarity=0.043 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhhhhhccHHHHHHHHHH
Q 023619 238 QWLATSHAINTAVKEIGDFENWMKTMDL 265 (280)
Q Consensus 238 QWl~lvd~fn~aLKEIGDVENWAk~IE~ 265 (280)
+..+|++.|..+|++...++.=+-.-|+
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aekek 119 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKEK 119 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667899999999999888866655554
No 30
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=35.09 E-value=1e+02 Score=24.88 Aligned_cols=23 Identities=13% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023619 256 FENWMKTMDLDCKSINAAIRNIY 278 (280)
Q Consensus 256 VENWAk~IE~Dmk~IeeaLe~v~ 278 (280)
++|=-+.||-|+..++++++.+.
T Consensus 72 L~~~l~sie~dLeDLe~sI~ivE 94 (130)
T 4dnd_A 72 LRNGLRSIEWDLEDLEETIGIVE 94 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666654
No 31
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical linker region, 2 tandem 3-helix coiled- coils, structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 PDB: 1aj3_A
Probab=33.63 E-value=1.7e+02 Score=22.88 Aligned_cols=93 Identities=12% Similarity=0.160 Sum_probs=44.7
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 023619 161 EASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWL 240 (280)
Q Consensus 161 esmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl 240 (280)
-.....+++.|+.-+.... .+..-+.++...+..|++.-..+. ..|......|......|...+..-.
T Consensus 32 l~~v~~ll~kh~~~~~ei~-----~~~~~v~~v~~~g~~L~~~~~~~~-------~~i~~~~~~l~~~w~~L~~~~~~R~ 99 (213)
T 1cun_A 32 LTGVQNLRKKHKRLEAELA-----AHEPAIQSVLDTGKKLSDDNTIGK-------EEIQQRLAQFVDHWKELKQLAAARG 99 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHTTCTTH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHhcCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899987554433 244445666667777765422222 2333333334433333333333222
Q ss_pred HHHHH---HHHhhhhhccHHHHHHHHHH
Q 023619 241 ATSHA---INTAVKEIGDFENWMKTMDL 265 (280)
Q Consensus 241 ~lvd~---fn~aLKEIGDVENWAk~IE~ 265 (280)
.-++. +.+-..++-+++.|....|.
T Consensus 100 ~~Le~~~~~~~f~~~~~e~~~Wl~~~e~ 127 (213)
T 1cun_A 100 QRLEESLEYQQFVANVEEEEAWINEKMT 127 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 22233344555666655554
No 32
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin repeat structural protein, crosslinking; 2.22A {Homo sapiens}
Probab=31.82 E-value=2.1e+02 Score=23.33 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=57.1
Q ss_pred cccchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 023619 156 AAGGLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQ 235 (280)
Q Consensus 156 ~~~~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQ 235 (280)
.-|.-.++..++++.|+.-+....... ..|.++...+..|... + + ..|.....+|......+...
T Consensus 32 d~G~Dl~~ve~llkkH~~le~ei~~~~-----~~v~~l~~~a~~l~~~---~----~---~~i~~rl~~l~~~~~~L~~~ 96 (210)
T 3pdy_A 32 EWGVDLPSVEAQLGSHRGLHQSIEEFR-----AKIERARSDEGQLSPA---T----R---GAYRDCLGRLDLQYAKLLNS 96 (210)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGGSCHH---H----H---HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHcCcc---c----h---HHHHHHHHHHHHHHHHHHHH
Confidence 345567778889999997666554433 3334444433333211 0 1 12555555566666666665
Q ss_pred HHHHHHHHHHHHHhhhhhccHHHHHHHHHHHH
Q 023619 236 TDQWLATSHAINTAVKEIGDFENWMKTMDLDC 267 (280)
Q Consensus 236 T~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dm 267 (280)
+.......+.+.+-+.+..+++.|..--|.-+
T Consensus 97 a~~R~~~L~~L~~f~~~~~~~~~Wl~eke~~~ 128 (210)
T 3pdy_A 97 SKARLRSLESLHSFVAAATKELMWLNEKEEEE 128 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555577777788888888887766544
No 33
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=31.37 E-value=3.9e+02 Score=26.28 Aligned_cols=54 Identities=9% Similarity=0.059 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 023619 191 RHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSH 244 (280)
Q Consensus 191 aSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd 244 (280)
.-+..+.+.+.+.++..+..+......++.+...+.....++.++..+|..-++
T Consensus 337 ~~~~~~~~~l~~~i~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~ 390 (695)
T 2j69_A 337 TLARLACNHTREAVARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEII 390 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555666666666666666666666666666666666666666655443
No 34
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=30.21 E-value=3.1e+02 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 023619 219 ELEIRTLAATIAKFMKQTDQWLATSHAINTAVKE 252 (280)
Q Consensus 219 E~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKE 252 (280)
..++++|++.-+++.|...+-...+...+..||+
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (487)
T 3oja_A 441 QHKETQLAEENARLKKLNGEADLALASANATLQE 474 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHH
Confidence 3444444444455555555555555555555544
No 35
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=29.96 E-value=62 Score=32.52 Aligned_cols=13 Identities=15% Similarity=0.209 Sum_probs=7.8
Q ss_pred HHHHHHhhhhhhh
Q 023619 163 SLLQLIQNHQHSS 175 (280)
Q Consensus 163 mLSsIlKEHq~kQ 175 (280)
|++.|+..|+.+|
T Consensus 286 Svs~ilt~~elkq 298 (551)
T 2b5u_A 286 SVSDVLSPDQVKQ 298 (551)
T ss_dssp EEEECCCHHHHHH
T ss_pred EEeecCCHHHHHH
Confidence 5566666666543
No 36
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=29.15 E-value=2.9e+02 Score=24.15 Aligned_cols=94 Identities=10% Similarity=0.090 Sum_probs=58.2
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhH---HHHH
Q 023619 164 LLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQT---DQWL 240 (280)
Q Consensus 164 LSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT---~QWl 240 (280)
+....+.|+.=+..+. ++..-+..+...++.|++.=.-+ ...|.....+|+...+.|...+ .+-+
T Consensus 43 l~~~~~kh~~le~El~-----a~e~~v~~v~~~g~~L~~~~hp~-------~~~I~~r~~~L~~~W~~L~~l~~~R~~~L 110 (283)
T 3pe0_A 43 MTAKKESYSALMRELE-----LKEKKIKELQNAGDRLLREDHPA-------RPTVESFQAALQTQWSWMLQLCCCIEAHL 110 (283)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHSCCTT-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHcCCCC-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666765444333 24455667777777777644333 4456666666666665554433 3455
Q ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHH
Q 023619 241 ATSHAINTAVKEIGDFENWMKTMDLDCKS 269 (280)
Q Consensus 241 ~lvd~fn~aLKEIGDVENWAk~IE~Dmk~ 269 (280)
.-+..+.+-+++.-|+++|..-|+..+..
T Consensus 111 ~~a~~~~qF~~da~e~e~Wl~~~~e~~~~ 139 (283)
T 3pe0_A 111 KENAAYFQFFSDVREAEGQLQKLQEALRR 139 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777888999999998766555443
No 37
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=29.09 E-value=2.8e+02 Score=24.46 Aligned_cols=82 Identities=21% Similarity=0.301 Sum_probs=0.0
Q ss_pred ccccccccccc-hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Q 023619 149 ADTTAAAAAGG-LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAA 227 (280)
Q Consensus 149 ~~tt~~t~~~~-lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ 227 (280)
++.+..+-+.. +-+.|-.|...|+.-+..+++.. .++.+.|+..| +++||...|.+..
T Consensus 63 a~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~-----------~~~~~~li~pL----------~~kie~d~K~v~~ 121 (253)
T 2ykt_A 63 GELASESQGSKELGDVLFQMAEVHRQIQNQLEEML-----------KSFHNELLTQL----------EQKVELDSRYLSA 121 (253)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHTTTHHHH----------HHHHHHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH----------HHHHHhhHHHHHH
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhh
Q 023619 228 TIAKFMKQTDQWLATSHAINTAVK 251 (280)
Q Consensus 228 ttakfaKQT~QWl~lvd~fn~aLK 251 (280)
.-.+|.++......-++.-...+|
T Consensus 122 ~~K~~~~e~k~~~~~l~K~~~e~~ 145 (253)
T 2ykt_A 122 ALKKYQTEQRSKGDALDKCQAELK 145 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHH
No 38
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=28.59 E-value=2.4e+02 Score=24.58 Aligned_cols=43 Identities=16% Similarity=0.451 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------hH--HHHHHHHHHHHHhhhhhccHH
Q 023619 215 EKRIELEIRTLAATIAKFMK--------QT--DQWLATSHAINTAVKEIGDFE 257 (280)
Q Consensus 215 QKrIE~EaKeL~~ttakfaK--------QT--~QWl~lvd~fn~aLKEIGDVE 257 (280)
.+.|+.....++.....|.. +. .--+.++..|++.++-|||+.
T Consensus 297 ~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 349 (353)
T 2x2e_A 297 RNKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSIIGNIN 349 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHccCCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34556666666666666643 23 678899999999999999985
No 39
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=28.34 E-value=97 Score=25.87 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhh
Q 023619 211 SYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKE 252 (280)
Q Consensus 211 Ay~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKE 252 (280)
+-.+-..++...+.|+..+..|......+......|-.++.+
T Consensus 57 ~~~~f~~~e~~~~~l~k~~k~y~~~~~~~~~~~~~l~~~~~~ 98 (251)
T 2fic_A 57 CVQNFNKQLTEGTRLQKDLRTYLASVKAMHEASKKLNECLQE 98 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444333344444433
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.06 E-value=4.4e+02 Score=25.50 Aligned_cols=90 Identities=9% Similarity=0.151 Sum_probs=60.0
Q ss_pred hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHH
Q 023619 160 LEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQW 239 (280)
Q Consensus 160 lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QW 239 (280)
++.+|...=++-..+-..++...+...+. -.....++..+.+.+...+.++-.|+..+..-..+|+.+..-+.+..+.=
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s-~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q 132 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKN-SKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQ 132 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444333333344444444333322 34577888999999999999999999999999999999998888766544
Q ss_pred HHHHHHHHHhh
Q 023619 240 LATSHAINTAV 250 (280)
Q Consensus 240 l~lvd~fn~aL 250 (280)
+.-+..+...|
T Consensus 133 ~~~ir~Lq~~l 143 (390)
T 1deq_A 133 VQRINLLQKNV 143 (390)
T ss_pred hHHHHHHHHHH
Confidence 44444444443
No 41
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of spectrin, alpha-helical linker region, 3-helix coiled-coil, structural protein; 2.50A {Gallus gallus} SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Probab=26.72 E-value=2.8e+02 Score=23.11 Aligned_cols=95 Identities=9% Similarity=0.104 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 023619 161 EASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWL 240 (280)
Q Consensus 161 esmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl 240 (280)
-+.+..+++.|+.-+...... ...+.++...+..|++.-.. ....|.....+|......|...+.+..
T Consensus 141 l~~v~~ll~~h~~l~~el~~~-----~~~i~~l~~~g~~L~~~~~~-------~~~~i~~~l~~L~~~w~~L~~~~~~R~ 208 (322)
T 1u4q_A 141 LTGVQNLRKKHKRLEAELAAH-----EPAIQGVLDTGKKLSDDNTI-------GKEEIQQRLAQFVDHWKELKQLAAARG 208 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888766554432 33555666666666653222 234455555555555555544444433
Q ss_pred HHHHH---HHHhhhhhccHHHHHHHHHHHH
Q 023619 241 ATSHA---INTAVKEIGDFENWMKTMDLDC 267 (280)
Q Consensus 241 ~lvd~---fn~aLKEIGDVENWAk~IE~Dm 267 (280)
.-++. +..-..+.-+++.|....|..+
T Consensus 209 ~~L~~~~~~~qf~~~~~~~~~Wl~~~e~~l 238 (322)
T 1u4q_A 209 QRLEESLEYQQFVANVEEEEAWINEKMTLV 238 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33332 2333445566777777666544
No 42
>1vf6_A PALS-1, PALS1-associated tight junction protein; L27 domain, heterodimer, four-helical bundle, coiled-coil, hydrophobic packing interactions; 2.10A {Homo sapiens} SCOP: a.194.1.1
Probab=25.30 E-value=48 Score=25.95 Aligned_cols=35 Identities=14% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Q 023619 236 TDQWLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIR 275 (280)
Q Consensus 236 T~QWl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe 275 (280)
+.|-+.+++.|...|+|=||+.| +.++-.+-++|+
T Consensus 2 t~rvLq~leRLQ~KL~erGd~s~-----~ekLs~lk~~Lq 36 (83)
T 1vf6_A 2 KLQVLQVLDRLKMKLQEKGDTSQ-----NEKLSMFYETLK 36 (83)
T ss_dssp ---CHHHHHHHHHHHHHHTCCTT-----HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHccccch-----HhHHHHHHHHHh
Confidence 34567899999999999999987 445555555553
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.05 E-value=4.3e+02 Score=27.90 Aligned_cols=105 Identities=10% Similarity=0.195 Sum_probs=0.0
Q ss_pred chHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHH
Q 023619 159 GLEASLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQ 238 (280)
Q Consensus 159 ~lesmLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~Q 238 (280)
.++..+..|-..........++.+++.+.. .+.+...++++-.-...++.+.+++...-++......+
T Consensus 925 ~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~------------~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e 992 (1080)
T 2dfs_A 925 GLENKIMQLQRKIDEQNKEYKSLLEKMNNL------------EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992 (1080)
T ss_dssp --------------------------CHHH------------HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHH
Q 023619 239 WLATSHAINTAVKEIGDFENWMKTMDLDCKSINAAIR 275 (280)
Q Consensus 239 Wl~lvd~fn~aLKEIGDVENWAk~IE~Dmk~IeeaLe 275 (280)
-..+-+.+....||..+.|.-......|+..-...|+
T Consensus 993 ~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~ 1029 (1080)
T 2dfs_A 993 IAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 44
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.99 E-value=2.4e+02 Score=21.71 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=44.2
Q ss_pred HHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh-ccHHHHHHHHHH
Q 023619 197 SDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI-GDFENWMKTMDL 265 (280)
Q Consensus 197 TdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI-GDVENWAk~IE~ 265 (280)
+--|.++|-..|++|-..-.-+..|..+|+..-..+..+..+-..-.+.++....-+ .+-.+|-..|..
T Consensus 4 S~ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~ 73 (81)
T 2jee_A 4 SLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA 73 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888888888888888777766666444333232222222 234466665543
No 45
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=24.39 E-value=40 Score=21.49 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=19.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH
Q 023619 208 VQESYVIEKRIELEIRTLAATIAKF 232 (280)
Q Consensus 208 VaqAy~NQKrIE~EaKeL~~ttakf 232 (280)
|-++-.|-|++|+|.-.|...++++
T Consensus 3 vykldanvkrlekevgklegevarl 27 (28)
T 4dac_A 3 VYKLDANVKRLEKEVGKLEGEVARL 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred eeeccccHHHHHHHHhhhhhhhhhc
Confidence 5566788999999998888776653
No 46
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=24.09 E-value=1.6e+02 Score=19.36 Aligned_cols=26 Identities=31% Similarity=0.495 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHH
Q 023619 217 RIELEIRTLAATIAKFMKQTDQWLAT 242 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT~QWl~l 242 (280)
++|.+.+.|+.-++++.+..+.....
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~t 28 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEET 28 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777788888777777776655443
No 47
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=23.45 E-value=3.3e+02 Score=22.82 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=21.9
Q ss_pred HHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023619 163 SLLQLIQNHQHSSLKLREQTERAKRDSVRHAKRVSDLLTDAL 204 (280)
Q Consensus 163 mLSsIlKEHq~kQa~lKeeqEkaRkEAiaSA~aLTdaLVD~L 204 (280)
....+++.|..=+... +.....-+.++..+++.|...-
T Consensus 40 ~v~~l~~~~~~f~~el----~~~~~~~v~~v~~~~~~L~~~~ 77 (323)
T 3edv_A 40 HVTMLQERFREFARDT----GNIGQERVDTVNHLADELINSG 77 (323)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHcC
Confidence 4556677776433222 2224456667778888887653
No 48
>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A
Probab=22.94 E-value=1.8e+02 Score=23.50 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 023619 195 RVSDLLTDALNGGVQESYVIEKRIELEIRTLAATIAKFMK 234 (280)
Q Consensus 195 aLTdaLVD~LN~GVaqAy~NQKrIE~EaKeL~~ttakfaK 234 (280)
.|+++|. .||..|.....+-..+..++-.++.+.++..|
T Consensus 66 nVGdAl~-ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~ 104 (106)
T 2yny_A 66 NVGSALS-ALNTSMKQIEDKIEEILSKIYHIENEIARIKK 104 (106)
T ss_dssp SHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555554 67888888888888888888888888877765
No 49
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.30 E-value=2.3e+02 Score=22.36 Aligned_cols=29 Identities=28% Similarity=0.210 Sum_probs=18.0
Q ss_pred hhhhhHHHHHHhHHHHHHHHHHHHHHHHH
Q 023619 203 ALNGGVQESYVIEKRIELEIRTLAATIAK 231 (280)
Q Consensus 203 ~LN~GVaqAy~NQKrIE~EaKeL~~ttak 231 (280)
.+-..|..+....+.+++|.++|+...+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665444
No 50
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A {Helicobacter pylori} PDB: 4g0h_A
Probab=21.53 E-value=5.4e+02 Score=26.76 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhh---ccHHHHHHHHHHHHHHHH
Q 023619 217 RIELEIRTLAATIAKFMKQTDQWLATSHAINTAVKEI---GDFENWMKTMDLDCKSIN 271 (280)
Q Consensus 217 rIE~EaKeL~~ttakfaKQT~QWl~lvd~fn~aLKEI---GDVENWAk~IE~Dmk~Ie 271 (280)
..+.-...|......+.++. +|..=++++|+||.|- |||.+--+.|. |++...
T Consensus 764 kVeQAlsDLknSkkdLsrNQ-ELtqKVdNLNQAVsEaK~tgdFSkVeQALa-dLKNss 819 (876)
T 4dvy_P 764 KVTQAKSDLENSVKDVIINQ-KVTDKVDNLNQAVSVAKAMGDFSRVEQVLA-DLKNFS 819 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCTHHHHHHHH-HHHHHH
T ss_pred hhhhhhhHHHhhHHhhhhhH-HHHHHHHHHHHHHHHHHhcCchhHHHHHHH-HHhhhh
Confidence 33444566676777776654 9999999999999884 99999999887 777664
No 51
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=21.29 E-value=2.1e+02 Score=19.83 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=10.0
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhh
Q 023619 231 KFMKQTDQWLATSHAINTAVKEI 253 (280)
Q Consensus 231 kfaKQT~QWl~lvd~fn~aLKEI 253 (280)
.+.....+|...++.+...|+.+
T Consensus 60 ~~~~~~~~~~~~L~~i~~~L~~~ 82 (93)
T 4ioe_A 60 QSKQAMQQYIPILEGISTDLKRI 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444443
No 52
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=21.20 E-value=4.5e+02 Score=23.63 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=16.0
Q ss_pred HHHHhhhhhccHHHHHHHHH-----HHHHHHHHHHH
Q 023619 245 AINTAVKEIGDFENWMKTMD-----LDCKSINAAIR 275 (280)
Q Consensus 245 ~fn~aLKEIGDVENWAk~IE-----~Dmk~IeeaLe 275 (280)
.++++|..+||+..-...+. .|+..+.+.|.
T Consensus 230 ~L~~al~~l~~~~~~i~~l~~~qa~~d~~~l~E~L~ 265 (366)
T 3dyt_A 230 DLNDAITEAGKTYEEIASLVAEQPKKDLHFLMECNH 265 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSGGGTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45666666666654333332 24555555554
Done!