BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023620
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNB|E Chain E, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|S Chain S, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|GG Chain g, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|UU Chain u, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|E Chain E, Mouse Constitutive 20s Proteasome
pdb|3UNE|S Chain S, Mouse Constitutive 20s Proteasome
pdb|3UNE|GG Chain g, Mouse Constitutive 20s Proteasome
pdb|3UNE|UU Chain u, Mouse Constitutive 20s Proteasome
pdb|3UNF|E Chain E, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|S Chain S, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|E Chain E, Mouse 20s Immunoproteasome
pdb|3UNH|S Chain S, Mouse 20s Immunoproteasome
Length = 263
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 126/237 (53%), Positives = 167/237 (70%), Gaps = 1/237 (0%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ 60
MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCT 120
KKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ T
Sbjct: 61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 121 QRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
QR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F
Sbjct: 121 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 181 ESTREDLIKDALMAIRETLQGET-LKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 236
E ++L+K L A+RETL E L + ++ +VG F I D + V +D E
Sbjct: 181 ECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLDGLE 237
>pdb|1IRU|F Chain F, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|T Chain T, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 263
Score = 273 bits (697), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 125/237 (52%), Positives = 166/237 (70%), Gaps = 1/237 (0%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ 60
MFRNQYD DVT WSP GR+ Q+EYAMEAVKQGSA +GL+SKTH VL + +A SEL++HQ
Sbjct: 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQ 60
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCT 120
KKI VD+HIG++IAGLTAD R+L +MR EC++ + ++ PLPV RLV + K Q+ T
Sbjct: 61 KKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPT 120
Query: 121 QRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
QR +RPYGVGLL+AG D+ G H++ CPS NYF+ +A +IG+RSQ+A+TYLER F
Sbjct: 121 QRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFM 180
Query: 181 ESTREDLIKDALMAIRETLQGET-LKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 236
E +L+K L A+RETL E L + ++ +VG F I D + V ++ E
Sbjct: 181 ECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237
>pdb|1G0U|E Chain E, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|S Chain S, A Gated Channel Into The Proteasome Core Particle
Length = 234
Score = 228 bits (582), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 150/234 (64%), Gaps = 2/234 (0%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ 60
MFRN YD D T+SP GRLFQVEYA+EA+KQGS +GLRS TH VL + + ELSS+Q
Sbjct: 1 MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQ 60
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCT 120
KKI K D+H+G+++AGL D RVLS Y+R +C S + L V R L DKAQ T
Sbjct: 61 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNT 120
Query: 121 QRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF- 179
Q + RPYGVGLL+ G D+ GAHL PSGN E AIG+RSQ AKTYLER + F
Sbjct: 121 QSAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFI 180
Query: 180 -SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ ++LIK + AI ++L+ E+L ++A+VG PF I D E V K I
Sbjct: 181 KIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234
>pdb|1FNT|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|E Chain E, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|S Chain S, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|E Chain E, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|S Chain S, Yeast 20s Proteasome:glidobactin A-Complex
pdb|1VSY|F Chain F, Proteasome Activator Complex
pdb|1VSY|T Chain T, Proteasome Activator Complex
pdb|3L5Q|K Chain K, Proteasome Activator Complex
pdb|3L5Q|W Chain W, Proteasome Activator Complex
pdb|3NZJ|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|E Chain E, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|S Chain S, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|F Chain F, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|E Chain E, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|S Chain S, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 234
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 149/234 (63%), Gaps = 2/234 (0%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ 60
MFRN YD D T+SP GRLFQVEYA+EA+KQGS +GLRS TH VL + + ELSS+Q
Sbjct: 1 MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQ 60
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCT 120
KKI K D+H+G+++AGL D RVLS Y+R +C S + L V R L DKAQ T
Sbjct: 61 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNT 120
Query: 121 QRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF- 179
Q RPYGVGLL+ G D+ GAHL PSGN E AIG+RSQ AKTYLER + F
Sbjct: 121 QSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFI 180
Query: 180 -SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ ++LIK + AI ++L+ E+L ++A+VG PF I D E V K I
Sbjct: 181 KIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 234
>pdb|4G4S|F Chain F, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 235
Score = 226 bits (577), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 119/234 (50%), Positives = 149/234 (63%), Gaps = 2/234 (0%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ 60
MFRN YD D T+SP GRLFQVEYA+EA+KQGS +GLRS TH VL + + ELSS+Q
Sbjct: 2 MFRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQ 61
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCT 120
KKI K D+H+G+++AGL D RVLS Y+R +C S + L V R L DKAQ T
Sbjct: 62 KKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNT 121
Query: 121 QRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF- 179
Q RPYGVGLL+ G D+ GAHL PSGN E AIG+RSQ AKTYLER + F
Sbjct: 122 QSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFI 181
Query: 180 -SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ ++LIK + AI ++L+ E+L ++A+VG PF I D E V K I
Sbjct: 182 KIDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 235
>pdb|3SDI|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
Length = 233
Score = 225 bits (574), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 149/233 (63%), Gaps = 2/233 (0%)
Query: 2 FRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK 61
FRN YD D T+SP GRLFQVEYA+EA+KQGS +GLRS TH VL + + ELSS+QK
Sbjct: 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 60
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
KI K D+H+G+++AGL D RVLS Y+R +C S + L V R L DKAQ TQ
Sbjct: 61 KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120
Query: 122 RSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF-- 179
+ RPYGVGLL+ G D+ GAHL PSGN E AIG+RSQ AKTYLER + F
Sbjct: 121 SAGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180
Query: 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ ++LIK + AI ++L+ E+L ++A+VG PF I D E V K I
Sbjct: 181 IDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233
>pdb|1RYP|F Chain F, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|T Chain T, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|E Chain E, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|S Chain S, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|E Chain E, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|E Chain E, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|S Chain S, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|E Chain E, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|S Chain S, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|E Chain E, Proteasome Inhibition By Fellutamide B
pdb|3D29|S Chain S, Proteasome Inhibition By Fellutamide B
pdb|3E47|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|E Chain E, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|S Chain S, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|E Chain E, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|S Chain S, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|E Chain E, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|S Chain S, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|E Chain E, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|S Chain S, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|E Chain E, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|S Chain S, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|E Chain E, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|S Chain S, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|E Chain E, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|S Chain S, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|E Chain E, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|S Chain S, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDK|E Chain E, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|S Chain S, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|E Chain E, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|S Chain S, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|E Chain E, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|S Chain S, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|E Chain E, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|S Chain S, 20s Yeast Proteasome In Complex With Glidobactin
Length = 233
Score = 224 bits (571), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 148/233 (63%), Gaps = 2/233 (0%)
Query: 2 FRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK 61
FRN YD D T+SP GRLFQVEYA+EA+KQGS +GLRS TH VL + + ELSS+QK
Sbjct: 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQK 60
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
KI K D+H+G+++AGL D RVLS Y+R +C S + L V R L DKAQ TQ
Sbjct: 61 KIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQ 120
Query: 122 RSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF-- 179
RPYGVGLL+ G D+ GAHL PSGN E AIG+RSQ AKTYLER + F
Sbjct: 121 SYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIK 180
Query: 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ ++LIK + AI ++L+ E+L ++A+VG PF I D E V K I
Sbjct: 181 IDGNPDELIKAGVEAISQSLRDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233
>pdb|3UNB|C Chain C, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Q Chain Q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|EE Chain e, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|SS Chain s, Mouse Constitutive 20s Proteasome In Complex With Pr-957
Length = 248
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 10/232 (4%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP G LFQVEYA EAVK+GS A+G+R K VVLG K+ ++L + +KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVAKKSVAKLQDERTVRKI 62
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+DD++ +A AGLTAD R++ R EC ++ T E P+ V + +A Q TQ +
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 124 WKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 182
+RP+G+ L+ G D G LY PSG Y ++A AIG +++ + +LE+ + + +
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIE 182
Query: 183 TREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
T + IK + A+ E +Q G+ ++ +AV+ +P IL+ E ++K +
Sbjct: 183 TDDLTIKLVIKALLEVVQSGGKNIE-----LAVMRRDQPLKILNPEEIEKYV 229
>pdb|3UNB|D Chain D, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|R Chain R, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|FF Chain f, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|TT Chain t, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|D Chain D, Mouse Constitutive 20s Proteasome
pdb|3UNE|R Chain R, Mouse Constitutive 20s Proteasome
pdb|3UNE|FF Chain f, Mouse Constitutive 20s Proteasome
pdb|3UNE|TT Chain t, Mouse Constitutive 20s Proteasome
pdb|3UNF|D Chain D, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|R Chain R, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|D Chain D, Mouse 20s Immunoproteasome
pdb|3UNH|R Chain R, Mouse 20s Immunoproteasome
Length = 241
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 138/237 (58%), Gaps = 10/237 (4%)
Query: 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQ 60
R++YD V T+SP GRLFQVEYA+EA+K GS AIG+++ V L + S L S
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---- 116
+KI ++D HIG A++GL AD + L R E N+ +TY + V + +++ A
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 117 -QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERR 175
+ + RP+GV LL G+DEKG L++ PSG + + A AIGS S+ A++ L+
Sbjct: 125 EEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEV 184
Query: 176 FENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ T ++ IK +L+ +++ ++ E L ++ +A V G+ FH+ +E ++++I
Sbjct: 185 YHK--SMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238
>pdb|3UNE|C Chain C, Mouse Constitutive 20s Proteasome
pdb|3UNE|Q Chain Q, Mouse Constitutive 20s Proteasome
pdb|3UNE|EE Chain e, Mouse Constitutive 20s Proteasome
pdb|3UNE|SS Chain s, Mouse Constitutive 20s Proteasome
pdb|3UNF|C Chain C, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Q Chain Q, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|C Chain C, Mouse 20s Immunoproteasome
pdb|3UNH|Q Chain Q, Mouse 20s Immunoproteasome
Length = 248
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 85/232 (36%), Positives = 136/232 (58%), Gaps = 10/232 (4%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP G LFQVEYA EAVK+GS A+G+R K VVLG K+ ++L + +KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+DD++ +A AGLTAD R++ R EC ++ T E P+ V + +A Q TQ +
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 124 WKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 182
+RP+G+ L+ G D G LY PSG Y ++A AIG +++ + +LE+ + + +
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIE 182
Query: 183 TREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
T + IK + A+ E +Q G+ ++ +AV+ +P IL+ E ++K +
Sbjct: 183 TDDLTIKLVIKALLEVVQSGGKNIE-----LAVMRRDQPLKILNPEEIEKYV 229
>pdb|2KU1|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU1|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 131/231 (56%), Gaps = 9/231 (3%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP GRLFQVEYA EAVK+GS A+G++ V+L K S L +KI
Sbjct: 12 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 71
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+DD++ +GL AD RVL + R TY S + + LV ++AD+ Q TQ
Sbjct: 72 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 131
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSES 182
RPYGV L+ AG+D+ G L+ P+G EY+A AIGS A ++LER + EN E
Sbjct: 132 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 190
Query: 183 TREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
++ + + A++ +L +GE LK+ +A + G + I DQE V+K +
Sbjct: 191 --KEAVTLGIKALKSSLEEGEELKAP--EIASITVGNKYRIYDQEEVKKFL 237
>pdb|1PMA|A Chain A, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|C Chain C, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|D Chain D, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|E Chain E, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|F Chain F, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|G Chain G, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|H Chain H, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|I Chain I, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|J Chain J, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|K Chain K, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|L Chain L, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|M Chain M, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|N Chain N, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|O Chain O, Proteasome From Thermoplasma Acidophilum
pdb|1YA7|A Chain A, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|B Chain B, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|C Chain C, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|D Chain D, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|E Chain E, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|F Chain F, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|G Chain G, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|3C91|A Chain A, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|B Chain B, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|C Chain C, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|D Chain D, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|E Chain E, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|F Chain F, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|G Chain G, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|O Chain O, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|P Chain P, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|R Chain R, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|S Chain S, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|T Chain T, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|U Chain U, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|A Chain A, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|B Chain B, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|C Chain C, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|D Chain D, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|E Chain E, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|F Chain F, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|G Chain G, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|O Chain O, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|P Chain P, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Q Chain Q, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|R Chain R, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|S Chain S, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|T Chain T, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|U Chain U, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3IPM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 233
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 131/231 (56%), Gaps = 9/231 (3%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP GRLFQVEYA EAVK+GS A+G++ V+L K S L +KI
Sbjct: 8 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+DD++ +GL AD RVL + R TY S + + LV ++AD+ Q TQ
Sbjct: 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSES 182
RPYGV L+ AG+D+ G L+ P+G EY+A AIGS A ++LER + EN E
Sbjct: 128 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 186
Query: 183 TREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
++ + + A++ +L +GE LK+ +A + G + I DQE V+K +
Sbjct: 187 --KEAVTLGIKALKSSLEEGEELKAP--EIASITVGNKYRIYDQEEVKKFL 233
>pdb|3JRM|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|A Chain A, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|B Chain B, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|C Chain C, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|D Chain D, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|E Chain E, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|F Chain F, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|G Chain G, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 227
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 131/231 (56%), Gaps = 9/231 (3%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP GRLFQVEYA EAVK+GS A+G++ V+L K S L +KI
Sbjct: 2 YDRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 61
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+DD++ +GL AD RVL + R TY S + + LV ++AD+ Q TQ
Sbjct: 62 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 121
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSES 182
RPYGV L+ AG+D+ G L+ P+G EY+A AIGS A ++LER + EN E
Sbjct: 122 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 180
Query: 183 TREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
++ + + A++ +L +GE LK+ +A + G + I DQE V+K +
Sbjct: 181 --KEAVTLGIKALKSSLEEGEELKAP--EIASITVGNKYRIYDQEEVKKFL 227
>pdb|1IRU|E Chain E, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|S Chain S, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 241
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 137/237 (57%), Gaps = 10/237 (4%)
Query: 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQ 60
R++YD V T+SP GRLFQVEY +EA+K GS AIG+++ V L + S L S
Sbjct: 5 RSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSI 64
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA---- 116
+KI ++D HIG A++GL AD + L R E N+ +TY + V + +++ A
Sbjct: 65 EKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFG 124
Query: 117 -QVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERR 175
+ + RP+GV LL G+DEKG L++ PSG + + A AIGS S+ A++ L+
Sbjct: 125 EEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEL 184
Query: 176 FENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ T ++ IK +L+ +++ ++ E L ++ +A V G+ FH+ +E ++++I
Sbjct: 185 YHK--SMTLKEAIKSSLIILKQVME-EKLNATNIELATVQPGQNFHMFTKEELEEVI 238
>pdb|1YAR|A Chain A, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|B Chain B, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|C Chain C, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|D Chain D, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|E Chain E, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|F Chain F, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|G Chain G, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
Length = 233
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/231 (38%), Positives = 130/231 (56%), Gaps = 9/231 (3%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
Y +T +SP GRLFQVEYA EAVK+GS A+G++ V+L K S L +KI
Sbjct: 8 YSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKI 67
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+DD++ +GL AD RVL + R TY S + + LV ++AD+ Q TQ
Sbjct: 68 QLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSES 182
RPYGV L+ AG+D+ G L+ P+G EY+A AIGS A ++LER + EN E
Sbjct: 128 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE- 186
Query: 183 TREDLIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
++ + + A++ +L +GE LK+ +A + G + I DQE V+K +
Sbjct: 187 --KEAVTLGIKALKSSLEEGEELKAP--EIASITVGNKYRIYDQEEVKKFL 233
>pdb|1YAU|A Chain A, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|B Chain B, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|C Chain C, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|D Chain D, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|E Chain E, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|F Chain F, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|G Chain G, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
Length = 233
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 10 VTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVD 67
+T +SP GRLFQVEYA EAVK+GS A+G++ V+L K S L +KI +D
Sbjct: 12 ITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLID 71
Query: 68 DHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRP 127
D++ +GL AD RVL + R TY S + + LV ++AD+ Q TQ RP
Sbjct: 72 DYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRP 131
Query: 128 YGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTRED 186
YGV L+ AG+D+ G L+ P+G EY+A AIGS A ++LER + EN E ++
Sbjct: 132 YGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE---KE 188
Query: 187 LIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ + A++ +L +GE LK+ +A + G + I DQE V+K +
Sbjct: 189 AVTLGIKALKSSLEEGEELKAP--EIASITVGNKYRIYDQEEVKKFL 233
>pdb|2KU2|A Chain A, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|B Chain B, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|C Chain C, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|D Chain D, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|E Chain E, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|F Chain F, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
pdb|2KU2|G Chain G, Dynamic Regulation Of Archaeal Proteasome Gate Opening As
Studied By Trosy-Nmr
Length = 237
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 88/227 (38%), Positives = 129/227 (56%), Gaps = 9/227 (3%)
Query: 10 VTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVD 67
+T +SP GRLFQVEYA EAVK+GS A+G++ V+L K S L +KI +D
Sbjct: 16 ITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLID 75
Query: 68 DHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRP 127
D++ +GL AD RVL + R TY S + + LV ++AD+ Q TQ RP
Sbjct: 76 DYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRP 135
Query: 128 YGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTRED 186
YGV L+ AG+D+ G L+ P+G EY+A AIGS A ++LER + EN E ++
Sbjct: 136 YGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPE---KE 192
Query: 187 LIKDALMAIRETL-QGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ + A++ +L +GE LK+ +A + G + I DQE V+K +
Sbjct: 193 AVTLGIKALKSSLEEGEELKAP--EIASITVGNKYRIYDQEEVKKFL 237
>pdb|1IRU|D Chain D, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|R Chain R, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 248
Score = 142 bits (357), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 135/232 (58%), Gaps = 10/232 (4%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP G LFQVEYA EAVK+GS A+G+R + VVLG K+ ++L + +KI
Sbjct: 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKI 62
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+DD++ +A AGLTAD R++ R EC ++ T E P+ V + +A Q TQ +
Sbjct: 63 CALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122
Query: 124 WKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 182
+RP+G+ L+ G D G LY PSG Y ++A AIG +++ + +LE+ + + +
Sbjct: 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE 182
Query: 183 TREDLIKDALMAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
T + IK + A+ E +Q G+ ++ +AV+ + IL+ E ++K +
Sbjct: 183 TDDLTIKLVIKALLEVVQSGGKNIE-----LAVMRRDQSLKILNPEEIEKYV 229
>pdb|1G0U|D Chain D, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|R Chain R, A Gated Channel Into The Proteasome Core Particle
Length = 241
Score = 141 bits (355), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 133/235 (56%), Gaps = 9/235 (3%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SS 58
+ R++YD V+T+SP GRLFQVEY++EA+K GS AIG+ +K VVLG +A S L S
Sbjct: 3 LTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESD 62
Query: 59 HQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQV 118
+KI ++D HIG A++GLTAD R + + R+ + ++ Y+ + V L + D A
Sbjct: 63 SIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLAAA 122
Query: 119 CTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 177
+ RP+GV LL+AG D + G L++ PSG ++ Y A AIGS S+ A+ L +
Sbjct: 123 A---AMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 179
Query: 178 NFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ +L+ ++ I + + E L + ++ + + F I D E +LI
Sbjct: 180 SSLTLKEAELL---VLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI 231
>pdb|4G4S|E Chain E, Structure Of Proteasome-Pba1-Pba2 Complex
Length = 261
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 12/241 (4%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SS 58
+ R++YD V+T+SP GRLFQVEY++EA+K GS AIG+ +K VVLG +A S L S
Sbjct: 4 LTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESD 63
Query: 59 HQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-- 116
+KI ++D HIG A++GLTAD R + + R+ + ++ Y+ + V L + D A
Sbjct: 64 SIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALR 123
Query: 117 ----QVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTY 171
+R RP+GV LL+AG D + G L++ PSG ++ Y A AIGS S+ A+
Sbjct: 124 FGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAE 183
Query: 172 LERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKL 231
L + + +L+ ++ I + + E L + ++ + + F I D E +L
Sbjct: 184 LLNEWHSSLTLKEAELL---VLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAEL 240
Query: 232 I 232
I
Sbjct: 241 I 241
>pdb|1FNT|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|D Chain D, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|R Chain R, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|D Chain D, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|R Chain R, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3OEU|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3UN4|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|D Chain D, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|R Chain R, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4B4T|E Chain E, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4INR|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|D Chain D, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|R Chain R, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 260
Score = 140 bits (352), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 12/241 (4%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SS 58
+ R++YD V+T+SP GRLFQVEY++EA+K GS AIG+ +K VVLG +A S L S
Sbjct: 3 LTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESD 62
Query: 59 HQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-- 116
+KI ++D HIG A++GLTAD R + + R+ + ++ Y+ + V L + D A
Sbjct: 63 SIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALR 122
Query: 117 ----QVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTY 171
+R RP+GV LL+AG D + G L++ PSG ++ Y A AIGS S+ A+
Sbjct: 123 FGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAE 182
Query: 172 LERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKL 231
L + + +L+ ++ I + + E L + ++ + + F I D E +L
Sbjct: 183 LLNEWHSSLTLKEAELL---VLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAEL 239
Query: 232 I 232
I
Sbjct: 240 I 240
>pdb|2Z5C|C Chain C, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
pdb|2Z5C|F Chain F, Crystal Structure Of A Novel Chaperone Complex For Yeast
20s Proteasome Assembly
Length = 262
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 12/241 (4%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SS 58
+ R++YD V+T+SP GRLFQVEY++EA+K GS AIG+ +K VVLG +A S L S
Sbjct: 5 LTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESD 64
Query: 59 HQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-- 116
+KI ++D HIG A++GLTAD R + + R+ + ++ Y+ + V L + D A
Sbjct: 65 SIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALR 124
Query: 117 ----QVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTY 171
+R RP+GV LL+AG D + G L++ PSG ++ Y A AIGS S+ A+
Sbjct: 125 FGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAE 184
Query: 172 LERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKL 231
L + + +L+ ++ I + + E L + ++ + + F I D E +L
Sbjct: 185 LLNEWHSSLTLKEAELL---VLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAEL 241
Query: 232 I 232
I
Sbjct: 242 I 242
>pdb|1VSY|E Chain E, Proteasome Activator Complex
pdb|1VSY|S Chain S, Proteasome Activator Complex
pdb|3L5Q|J Chain J, Proteasome Activator Complex
pdb|3L5Q|V Chain V, Proteasome Activator Complex
pdb|3MG6|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|D Chain D, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|R Chain R, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 250
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 134/241 (55%), Gaps = 12/241 (4%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SS 58
+ R++YD V+T+SP GRLFQVEY++EA+K GS AIG+ +K VVLG +A S L S
Sbjct: 3 LTRSEYDRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESD 62
Query: 59 HQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA-- 116
+KI ++D HIG A++GLTAD R + + R+ + ++ Y+ + V L + D A
Sbjct: 63 SIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALR 122
Query: 117 ----QVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTY 171
+R RP+GV LL+AG D + G L++ PSG ++ Y A AIGS S+ A+
Sbjct: 123 FGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAE 182
Query: 172 LERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKL 231
L + + +L+ ++ I + + E L + ++ + + F I D E +L
Sbjct: 183 LLNEWHSSLTLKEAELL---VLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAEL 239
Query: 232 I 232
I
Sbjct: 240 I 240
>pdb|1Z7Q|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|B Chain B, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|P Chain P, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|B Chain B, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|P Chain P, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|B Chain B, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|P Chain P, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|C Chain C, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|C Chain C, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|B Chain B, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|P Chain P, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 258
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 129/241 (53%), Gaps = 10/241 (4%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---S 57
M +YD+ T +SP GRL+QVEYA+E++ AIG+ + +VL K S L
Sbjct: 1 MGSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQD 60
Query: 58 SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQ 117
+ +K++K++D I VA+AGLTAD +L R NY TY +PV LV +L+D Q
Sbjct: 61 TSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQ 120
Query: 118 VCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 176
TQ RP+GV + AG D++ G LY + PSGNY ++A ++G+ + AA+T L+ +
Sbjct: 121 GYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY 180
Query: 177 ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 236
++ + +D I+ AL + +T L A + G D E QK+ E
Sbjct: 181 KD--DMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAN----DGEVYQKIFKPQE 234
Query: 237 I 237
I
Sbjct: 235 I 235
>pdb|1G0U|B Chain B, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|P Chain P, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3MG6|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 245
Score = 138 bits (348), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 129/241 (53%), Gaps = 10/241 (4%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---S 57
M +YD+ T +SP GRL+QVEYA+E++ AIG+ + +VL K S L
Sbjct: 1 MGSRRYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQD 60
Query: 58 SHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQ 117
+ +K++K++D I VA+AGLTAD +L R NY TY +PV LV +L+D Q
Sbjct: 61 TSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQ 120
Query: 118 VCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 176
TQ RP+GV + AG D++ G LY + PSGNY ++A ++G+ + AA+T L+ +
Sbjct: 121 GYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDY 180
Query: 177 ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 236
++ + +D I+ AL + +T L A + G D E QK+ E
Sbjct: 181 KD--DMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAN----DGEVYQKIFKPQE 234
Query: 237 I 237
I
Sbjct: 235 I 235
>pdb|3H4P|A Chain A, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|B Chain B, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|C Chain C, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|D Chain D, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|E Chain E, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|F Chain F, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|G Chain G, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|H Chain H, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|I Chain I, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|J Chain J, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|K Chain K, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|L Chain L, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|M Chain M, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|N Chain N, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 264
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 81/209 (38%), Positives = 115/209 (55%), Gaps = 3/209 (1%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP GRL+QVEYA EAV++G+ AIG+ K VVL + S+L + +KI
Sbjct: 12 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKI 71
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
F++DDH+ A +GL AD RVL R E Y TY + + L ++ D Q TQ
Sbjct: 72 FQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHG 131
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSES 182
RP+GV LL+AG+D+ A L+ PSG EY+A AIGS LE+ + ++ +
Sbjct: 132 GVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLD 191
Query: 183 TREDLIKDALMAIRETLQGETLKSSICTV 211
+L AL E ++ E + I TV
Sbjct: 192 EGLELAITALTKANEDIKPENVDVCIITV 220
>pdb|1RYP|C Chain C, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Q Chain Q, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|B Chain B, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|P Chain P, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|B Chain B, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|W Chain W, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|B Chain B, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|P Chain P, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|B Chain B, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|P Chain P, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|B Chain B, Proteasome Inhibition By Fellutamide B
pdb|3D29|P Chain P, Proteasome Inhibition By Fellutamide B
pdb|3E47|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|B Chain B, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|P Chain P, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|B Chain B, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|P Chain P, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|B Chain B, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|P Chain P, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|B Chain B, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|P Chain P, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|B Chain B, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|P Chain P, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|B Chain B, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|P Chain P, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|B Chain B, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|P Chain P, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|B Chain B, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|P Chain P, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|B Chain B, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|P Chain P, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|B Chain B, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|P Chain P, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|B Chain B, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|P Chain P, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 138 bits (347), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 128/237 (54%), Gaps = 10/237 (4%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQK 61
+YD+ T +SP GRL+QVEYA+E++ AIG+ + +VL K S L + +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTE 63
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
K++K++D I VA+AGLTAD +L R NY TY +PV LV +L+D Q TQ
Sbjct: 64 KLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQ 123
Query: 122 RSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
RP+GV + AG D++ G LY + PSGNY ++A ++G+ + AA+T L+ +++
Sbjct: 124 HGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD-- 181
Query: 181 ESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 237
+ +D I+ AL + +T L A + G D E QK+ EI
Sbjct: 182 DMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAN----DGEVYQKIFKPQEI 234
>pdb|3OEU|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|B Chain B, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|P Chain P, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 235
Score = 133 bits (335), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 124/231 (53%), Gaps = 10/231 (4%)
Query: 11 TTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVD 67
T +SP GRL+QVEYA+E++ AIG+ + +VL K S L + +K++K++
Sbjct: 1 TIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLN 60
Query: 68 DHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRP 127
D I VA+AGLTAD +L R NY TY +PV LV +L+D Q TQ RP
Sbjct: 61 DKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRP 120
Query: 128 YGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTRED 186
+GV + AG D++ G LY + PSGNY ++A ++G+ + AA+T L+ +++ + +D
Sbjct: 121 FGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDD 178
Query: 187 LIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 237
I+ AL + +T L A + G D E QK+ EI
Sbjct: 179 AIELALKTLSKTTDSSALTYDRLEFATIRKGAN----DGEVYQKIFKPQEI 225
>pdb|1RYP|E Chain E, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|S Chain S, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|D Chain D, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|R Chain R, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|D Chain D, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Y Chain Y, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|D Chain D, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|R Chain R, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|D Chain D, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|R Chain R, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|D Chain D, Proteasome Inhibition By Fellutamide B
pdb|3D29|R Chain R, Proteasome Inhibition By Fellutamide B
pdb|3E47|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|D Chain D, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|R Chain R, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|D Chain D, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|R Chain R, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|D Chain D, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|R Chain R, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|D Chain D, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|R Chain R, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|D Chain D, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|R Chain R, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|D Chain D, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|R Chain R, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|D Chain D, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|R Chain R, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|D Chain D, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|R Chain R, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|D Chain D, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|R Chain R, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|D Chain D, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|R Chain R, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|D Chain D, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|R Chain R, 20s Yeast Proteasome In Complex With Glidobactin
Length = 242
Score = 133 bits (335), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 12/235 (5%)
Query: 7 DTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIF 64
D V+T+SP GRLFQVEY++EA+K GS AIG+ +K VVLG +A S L S +KI
Sbjct: 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIV 60
Query: 65 KVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA------QV 118
++D HIG A++GLTAD R + + R+ + ++ Y+ + V L + D A
Sbjct: 61 EIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGAS 120
Query: 119 CTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 177
+R RP+GV LL+AG D + G L++ PSG ++ Y A AIGS S+ A+ L +
Sbjct: 121 GEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWH 180
Query: 178 NFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232
+ +L+ ++ I + + E L + ++ + + F I D E +LI
Sbjct: 181 SSLTLKEAELL---VLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELI 232
>pdb|1J2P|A Chain A, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|B Chain B, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|C Chain C, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|D Chain D, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|E Chain E, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|F Chain F, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
pdb|1J2P|G Chain G, Alpha-Ring From The Proteasome From Archaeoglobus Fulgidus
Length = 246
Score = 132 bits (333), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 81/206 (39%), Positives = 113/206 (54%), Gaps = 10/206 (4%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKI 63
YD +T +SP GRLFQVEYA EAVK+G+ AIG++ K V+L + S+L +KI
Sbjct: 8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKI 67
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+K+D+HI A +GL AD RVL R E TY+ P+ V L ++ D Q TQ
Sbjct: 68 YKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG 127
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSEST 183
RP+GV LL+AG++E LY PSG EY+A AIG A + E+ +
Sbjct: 128 GVRPFGVSLLIAGVNEV-PKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEY------- 179
Query: 184 REDLIKDALMAIRETLQGETLKSSIC 209
R+DL D M + G +++S +
Sbjct: 180 RDDLSFDDAMVLGLVAMGLSIESELV 205
>pdb|1J2Q|A Chain A, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|B Chain B, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|C Chain C, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|D Chain D, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|E Chain E, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|F Chain F, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|G Chain G, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 237
Score = 132 bits (331), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 112/201 (55%), Gaps = 10/201 (4%)
Query: 10 VTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVD 67
+T +SP GRLFQVEYA EAVK+G+ AIG++ K V+L + S+L + +KI+K+D
Sbjct: 3 ITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADTIEKIYKID 62
Query: 68 DHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRP 127
+HI A +GL AD RVL R E TY+ P+ V L ++ D Q TQ RP
Sbjct: 63 EHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRP 122
Query: 128 YGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDL 187
+GV LL+AG+DE LY PSG EY+A AIG A + E+ + R+DL
Sbjct: 123 FGVSLLIAGVDEV-PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEY-------RDDL 174
Query: 188 IKDALMAIRETLQGETLKSSI 208
D M + G +++S +
Sbjct: 175 SFDDAMVLGLVAMGLSIESEL 195
>pdb|1VSY|C Chain C, Proteasome Activator Complex
pdb|1VSY|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|H Chain H, Proteasome Activator Complex
pdb|3L5Q|T Chain T, Proteasome Activator Complex
Length = 232
Score = 131 bits (330), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 10/228 (4%)
Query: 14 SPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHI 70
SP GRL+QVEYA+E++ AIG+ + +VL K S L + +K++K++D I
Sbjct: 1 SPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKI 60
Query: 71 GVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGV 130
VA+AGLTAD +L R NY TY +PV LV +L+D Q TQ RP+GV
Sbjct: 61 AVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGV 120
Query: 131 GLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189
+ AG D++ G LY + PSGNY ++A ++G+ + AA+T L+ +++ + +D I+
Sbjct: 121 SFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKD--DMKVDDAIE 178
Query: 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 237
AL + +T L A + G D E QK+ EI
Sbjct: 179 LALKTLSKTTDSSALTYDRLEFATIRKGAN----DGEVYQKIFKPQEI 222
>pdb|3UNB|A Chain A, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|O Chain O, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|CC Chain c, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|QQ Chain q, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|A Chain A, Mouse Constitutive 20s Proteasome
pdb|3UNE|O Chain O, Mouse Constitutive 20s Proteasome
pdb|3UNE|CC Chain c, Mouse Constitutive 20s Proteasome
pdb|3UNE|QQ Chain q, Mouse Constitutive 20s Proteasome
pdb|3UNF|A Chain A, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|O Chain O, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|A Chain A, Mouse 20s Immunoproteasome
pdb|3UNH|O Chain O, Mouse 20s Immunoproteasome
Length = 234
Score = 131 bits (329), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 117/210 (55%), Gaps = 4/210 (1%)
Query: 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ 60
M + Y +TT+SP+G+L Q+EYA+ AV G+ ++G+++ VVL K S L +
Sbjct: 1 MAKRGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDER 60
Query: 61 K--KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQV 118
K+ + HIG+ +G+ D RVL R Y Y+ P+P +LV ++A Q
Sbjct: 61 SVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQE 120
Query: 119 CTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN 178
TQ RP+GV LL+ G +E +L+ + PSG YF ++A A+G KT+LE+R+
Sbjct: 121 YTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNE 180
Query: 179 FSESTREDLIKDALMAIRETLQGETLKSSI 208
E ED I A++ ++E+ +G+ + +I
Sbjct: 181 DLE--LEDAIHTAILTLKESFEGQMTEDNI 208
>pdb|1IRU|B Chain B, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|P Chain P, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 233
Score = 129 bits (325), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 115/205 (56%), Gaps = 4/205 (1%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KI 63
Y +TT+SP+G+L Q+EYA+ AV G+ ++G+++ VVL K S L + K+
Sbjct: 5 YSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKV 64
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
+ HIG+ +G+ D RVL R Y Y+ P+P +LV ++A Q TQ
Sbjct: 65 EPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSEST 183
RP+GV LL+ G +E +L+ + PSG YF ++A A+G KT+LE+R+ E
Sbjct: 125 GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLE-- 182
Query: 184 REDLIKDALMAIRETLQGETLKSSI 208
ED I A++ ++E+ +G+ + +I
Sbjct: 183 LEDAIHTAILTLKESFEGQMTEDNI 207
>pdb|1RYP|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|A Chain A, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|O Chain O, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|A Chain A, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|O Chain O, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|A Chain A, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|V Chain V, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|B Chain B, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|P Chain P, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|A Chain A, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|O Chain O, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|A Chain A, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|O Chain O, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|A Chain A, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|O Chain O, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|A Chain A, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|O Chain O, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|A Chain A, Proteasome Inhibition By Fellutamide B
pdb|3D29|O Chain O, Proteasome Inhibition By Fellutamide B
pdb|3E47|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|A Chain A, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|O Chain O, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3NZJ|A Chain A, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|O Chain O, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|A Chain A, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|O Chain O, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|A Chain A, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|O Chain O, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|A Chain A, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|O Chain O, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|A Chain A, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|O Chain O, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|A Chain A, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|O Chain O, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|A Chain A, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|O Chain O, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|A Chain A, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|O Chain O, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|A Chain A, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|O Chain O, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|A Chain A, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|O Chain O, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|B Chain B, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|B Chain B, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|A Chain A, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|O Chain O, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|A Chain A, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|O Chain O, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|A Chain A, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|O Chain O, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 250
Score = 129 bits (325), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/220 (36%), Positives = 125/220 (56%), Gaps = 7/220 (3%)
Query: 4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--K 61
++Y +TT+SP+G+L Q++YA+ AVKQG ++G+++ VV+ K++S L+ +
Sbjct: 3 DRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS 62
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSEC-INYSYTYESPLPVGRLVVQLADKAQVCT 120
K+ + IG +G+ D RVL R +Y Y P LV ++A Q T
Sbjct: 63 KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEAT 122
Query: 121 QRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENF 179
Q RP+GV LL+AG DE G LY PSG+YF ++A AIG S AAKT+LE+R+ +
Sbjct: 123 QSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND- 181
Query: 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP 219
E ED I AL+ ++E+++GE +A++G P
Sbjct: 182 -ELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENP 219
>pdb|1RYP|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|C Chain C, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Q Chain Q, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|C Chain C, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|X Chain X, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|C Chain C, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Q Chain Q, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|C Chain C, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Q Chain Q, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|C Chain C, Proteasome Inhibition By Fellutamide B
pdb|3D29|Q Chain Q, Proteasome Inhibition By Fellutamide B
pdb|3E47|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|C Chain C, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Q Chain Q, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|C Chain C, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Q Chain Q, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|C Chain C, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Q Chain Q, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|C Chain C, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Q Chain Q, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|C Chain C, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Q Chain Q, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|C Chain C, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Q Chain Q, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|C Chain C, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Q Chain Q, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|C Chain C, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Q Chain Q, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|C Chain C, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Q Chain Q, 20s Yeast Proteasome In Complex With Glidobactin
Length = 241
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 113/201 (56%), Gaps = 6/201 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ---KK 62
YD ++ +SP G +FQVEYA+EAVK+G+ A+G++ K VVLGC ++ +L + K
Sbjct: 2 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 61
Query: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR 122
+ K+D H+ ++ +GL AD R+L R E ++ T E P+ V L +A Q TQ
Sbjct: 62 VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 121
Query: 123 SWKRPYGVGLLVAGLDEKG--AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
RP+GV L+AG D + LY PSG Y + A IG S+ + +LE+ ++
Sbjct: 122 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 181
Query: 181 -ESTREDLIKDALMAIRETLQ 200
+T E+ +K + ++ E +Q
Sbjct: 182 PPATVEECVKLTVRSLLEVVQ 202
>pdb|1G0U|C Chain C, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Q Chain Q, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|C Chain C, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Q Chain Q, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 243
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 113/201 (56%), Gaps = 6/201 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ---KK 62
YD ++ +SP G +FQVEYA+EAVK+G+ A+G++ K VVLGC ++ +L + K
Sbjct: 4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 63
Query: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR 122
+ K+D H+ ++ +GL AD R+L R E ++ T E P+ V L +A Q TQ
Sbjct: 64 VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 123
Query: 123 SWKRPYGVGLLVAGLDEKG--AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
RP+GV L+AG D + LY PSG Y + A IG S+ + +LE+ ++
Sbjct: 124 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 183
Query: 181 -ESTREDLIKDALMAIRETLQ 200
+T E+ +K + ++ E +Q
Sbjct: 184 PPATVEECVKLTVRSLLEVVQ 204
>pdb|1FNT|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|D Chain D, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|R Chain R, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|C Chain C, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Q Chain Q, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|C Chain C, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Q Chain Q, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|C Chain C, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Q Chain Q, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|C Chain C, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|C Chain C, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Q Chain Q, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|D Chain D, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|D Chain D, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|C Chain C, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Q Chain Q, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 254
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 113/201 (56%), Gaps = 6/201 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ---KK 62
YD ++ +SP G +FQVEYA+EAVK+G+ A+G++ K VVLGC ++ +L + K
Sbjct: 4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSK 63
Query: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR 122
+ K+D H+ ++ +GL AD R+L R E ++ T E P+ V L +A Q TQ
Sbjct: 64 VSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 123
Query: 123 SWKRPYGVGLLVAGLDEKG--AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
RP+GV L+AG D + LY PSG Y + A IG S+ + +LE+ ++
Sbjct: 124 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKE 183
Query: 181 -ESTREDLIKDALMAIRETLQ 200
+T E+ +K + ++ E +Q
Sbjct: 184 PPATVEECVKLTVRSLLEVVQ 204
>pdb|1IRU|C Chain C, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Q Chain Q, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 261
Score = 124 bits (310), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 8/235 (3%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QK 61
+YD+ T +SP GRL+QVEYAMEA+ +G+ + V+L + +L +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
KI+K+++ + ++AG+T+D VL+ +R Y Y+ P+P +LV L D Q TQ
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 122 RSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
KRP+GV LL G D+ G LY + PSGNY ++A IG+ S AA + L++ ++
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 182
Query: 181 ESTREDLIKDALMAIRETLQGETL---KSSICTVAVVGAGEPFHILDQETVQKLI 232
E T + + A+ + +T+ L K I T+ +L Q+ V++LI
Sbjct: 183 EMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237
>pdb|3UNB|B Chain B, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|P Chain P, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|DD Chain d, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|RR Chain r, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|B Chain B, Mouse Constitutive 20s Proteasome
pdb|3UNE|P Chain P, Mouse Constitutive 20s Proteasome
pdb|3UNE|DD Chain d, Mouse Constitutive 20s Proteasome
pdb|3UNE|RR Chain r, Mouse Constitutive 20s Proteasome
pdb|3UNF|B Chain B, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|P Chain P, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|B Chain B, Mouse 20s Immunoproteasome
pdb|3UNH|P Chain P, Mouse 20s Immunoproteasome
Length = 261
Score = 123 bits (309), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 126/235 (53%), Gaps = 8/235 (3%)
Query: 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSH---QK 61
+YD+ T +SP GRL+QVEYAMEA+ +G+ + V+L + +L +
Sbjct: 4 RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSE 63
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
KI+K+++ + ++AG+T+D VL+ +R Y Y+ P+P +LV L D Q TQ
Sbjct: 64 KIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQ 123
Query: 122 RSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS 180
KRP+GV LL G D+ G LY + PSGNY ++A IG+ S AA + L++ ++
Sbjct: 124 FGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKE-G 182
Query: 181 ESTREDLIKDALMAIRETLQGETL---KSSICTVAVVGAGEPFHILDQETVQKLI 232
E T + + A+ + +T+ L K I T+ +L Q+ V++LI
Sbjct: 183 EMTLKSALALAVKVLNKTMDVSKLSAEKVEIATLTRESGKTVIRVLKQKEVEQLI 237
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KI 63
YD + +SP GR FQVEYA++AV+ G+ +IG++ VV S+L QK KI
Sbjct: 8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 67
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
VD HIG +GL DGR L R E ++ Y++P+P+ +L Q T +
Sbjct: 68 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 127
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE-- 181
RP+GV + G+D+ GAHLY PSG+Y+ Y+ A G Q+AK LE+ ++ E
Sbjct: 128 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 187
Query: 182 STRE 185
S RE
Sbjct: 188 SARE 191
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 121 bits (303), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KI 63
YD + +SP GR FQVEYA++AV+ G+ +IG++ VV S+L QK KI
Sbjct: 7 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 66
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
VD HIG +GL DGR L R E ++ Y++P+P+ +L Q T +
Sbjct: 67 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 126
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE-- 181
RP+GV + G+D+ GAHLY PSG+Y+ Y+ A G Q+AK LE+ ++ E
Sbjct: 127 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 186
Query: 182 STRE 185
S RE
Sbjct: 187 SARE 190
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KI 63
YD + +SP GR FQVEYA++AV+ G+ +IG++ VV S+L QK KI
Sbjct: 8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 67
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
VD HIG +GL DGR L R E ++ Y++P+P+ +L Q T +
Sbjct: 68 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 127
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE-- 181
RP+GV + G+D+ GAHLY PSG+Y+ Y+ A G Q+AK LE+ ++ E
Sbjct: 128 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 187
Query: 182 STRE 185
S RE
Sbjct: 188 SARE 191
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KI 63
YD + +SP GR FQVEYA++AV+ G+ +IG++ VV S+L QK KI
Sbjct: 2 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 61
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
VD HIG +GL DGR L R E ++ Y++P+P+ +L Q T +
Sbjct: 62 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 121
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE-- 181
RP+GV + G+D+ GAHLY PSG+Y+ Y+ A G Q+AK LE+ ++ E
Sbjct: 122 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 181
Query: 182 STRE 185
S RE
Sbjct: 182 SARE 185
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 120 bits (302), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/184 (38%), Positives = 101/184 (54%), Gaps = 4/184 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK--KI 63
YD + +SP GR FQVEYA++AV+ G+ +IG++ VV S+L QK KI
Sbjct: 4 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKI 63
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
VD HIG +GL DGR L R E ++ Y++P+P+ +L Q T +
Sbjct: 64 QVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123
Query: 124 WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE-- 181
RP+GV + G+D+ GAHLY PSG+Y+ Y+ A G Q+AK LE+ ++ E
Sbjct: 124 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGL 183
Query: 182 STRE 185
S RE
Sbjct: 184 SARE 187
>pdb|1IRU|G Chain G, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|U Chain U, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 254
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKI 63
YD +T+SP GR+FQVEYAM+AV+ S AIG+R K VV G S+L K++
Sbjct: 7 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 66
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
F VD H+G+A+AGL AD R L+ R E N+ + +P+ L ++A T S
Sbjct: 67 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126
Query: 124 WKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 182
RP+G ++ GA LY PSG + Y AIG QAAKT +E+ E
Sbjct: 127 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEM 184
Query: 183 TREDLIKD 190
T D++K+
Sbjct: 185 TCRDIVKE 192
>pdb|3UNB|F Chain F, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|T Chain T, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|HH Chain h, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|VV Chain v, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|F Chain F, Mouse Constitutive 20s Proteasome
pdb|3UNE|T Chain T, Mouse Constitutive 20s Proteasome
pdb|3UNE|HH Chain h, Mouse Constitutive 20s Proteasome
pdb|3UNE|VV Chain v, Mouse Constitutive 20s Proteasome
pdb|3UNF|F Chain F, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|T Chain T, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|F Chain F, Mouse 20s Immunoproteasome
pdb|3UNH|T Chain T, Mouse 20s Immunoproteasome
Length = 255
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKI 63
YD +T+SP GR+FQVEYAM+AV+ S AIG+R K VV G S+L K++
Sbjct: 8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRL 67
Query: 64 FKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS 123
F VD H+G+A+AGL AD R L+ R E N+ + +P+ L ++A T S
Sbjct: 68 FNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 127
Query: 124 WKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 182
RP+G ++ GA LY PSG + Y AIG QAAKT +E+ E
Sbjct: 128 AVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKL--QMKEM 185
Query: 183 TREDLIKD 190
T D++K+
Sbjct: 186 TCRDVVKE 193
>pdb|1IRU|A Chain A, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|O Chain O, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 246
Score = 118 bits (295), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 121/228 (53%), Gaps = 6/228 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKK 62
+D +T +SP GRL+QVEYA +A+ QG ++ +R K V+ K +L SS
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR 122
+FK+ ++IG + G+TAD R + R E N+ Y Y +PV L ++AD +QV TQ
Sbjct: 69 LFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 123 SWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE 181
+ RP G +++ G+DE+ Y C P+G Y ++A A G + + ++LE++ + +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 182 STREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETV 228
T E ++ A+ + L + K S V VV P F IL + +
Sbjct: 189 WTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEI 235
>pdb|3UNB|G Chain G, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|U Chain U, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|II Chain i, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|WW Chain w, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|G Chain G, Mouse Constitutive 20s Proteasome
pdb|3UNE|U Chain U, Mouse Constitutive 20s Proteasome
pdb|3UNE|II Chain i, Mouse Constitutive 20s Proteasome
pdb|3UNE|WW Chain w, Mouse Constitutive 20s Proteasome
pdb|3UNF|G Chain G, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|U Chain U, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|G Chain G, Mouse 20s Immunoproteasome
pdb|3UNH|U Chain U, Mouse 20s Immunoproteasome
Length = 246
Score = 117 bits (294), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 120/228 (52%), Gaps = 6/228 (2%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGS-AAIGLRSKTHVVLGCVNKANSEL--SSHQKK 62
+D +T +SP GRL+QVEYA +A+ QG ++ +R K V+ K +L SS
Sbjct: 9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTH 68
Query: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR 122
+FK+ + IG + G+TAD R + R E N+ Y Y +PV L ++AD +QV TQ
Sbjct: 69 LFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQN 128
Query: 123 SWKRPYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE 181
+ RP G +++ G+DE+ Y C P+G Y ++A A G + + ++LE++ + +
Sbjct: 129 AEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFD 188
Query: 182 STREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETV 228
T E ++ A+ + L + K S V VV P F IL + +
Sbjct: 189 WTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEI 235
>pdb|1VSY|B Chain B, Proteasome Activator Complex
pdb|1VSY|P Chain P, Proteasome Activator Complex
pdb|3L5Q|G Chain G, Proteasome Activator Complex
pdb|3L5Q|S Chain S, Proteasome Activator Complex
Length = 231
Score = 114 bits (284), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 74/203 (36%), Positives = 112/203 (55%), Gaps = 7/203 (3%)
Query: 21 QVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ--KKIFKVDDHIGVAIAGLT 78
Q++YA+ AVKQG ++G+++ VV+ K++S L+ + K+ + IG +G+
Sbjct: 1 QIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG 60
Query: 79 ADGRVLSRYMRSEC-INYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGL 137
D RVL R +Y Y P LV ++A Q TQ RP+GV LL+AG
Sbjct: 61 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGH 120
Query: 138 DE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIR 196
DE G LY PSG+YF ++A AIG S AAKT+LE+R+ + E ED I AL+ ++
Sbjct: 121 DEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWND--ELELEDAIHIALLTLK 178
Query: 197 ETLQGETLKSSICTVAVVGAGEP 219
E+++GE +A++G P
Sbjct: 179 ESVEGE-FNGDTIELAIIGDENP 200
>pdb|1VSY|D Chain D, Proteasome Activator Complex
pdb|1VSY|R Chain R, Proteasome Activator Complex
pdb|3L5Q|I Chain I, Proteasome Activator Complex
pdb|3L5Q|U Chain U, Proteasome Activator Complex
Length = 227
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 105/188 (55%), Gaps = 6/188 (3%)
Query: 19 LFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQ---KKIFKVDDHIGVAIA 75
+FQVEYA+EAVK+G+ A+G++ K VVLGC ++ +L + K+ K+D H+ ++ +
Sbjct: 1 IFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFS 60
Query: 76 GLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVA 135
GL AD R+L R E ++ T E P+ V L +A Q TQ RP+GV L+A
Sbjct: 61 GLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIA 120
Query: 136 GLDEKG--AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFS-ESTREDLIKDAL 192
G D + LY PSG Y + A IG S+ + +LE+ ++ +T E+ +K +
Sbjct: 121 GFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTV 180
Query: 193 MAIRETLQ 200
++ E +Q
Sbjct: 181 RSLLEVVQ 188
>pdb|1G0U|G Chain G, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|U Chain U, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|G Chain G, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|U Chain U, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|G Chain G, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|U Chain U, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|G Chain G, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|U Chain U, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|A Chain A, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|A Chain A, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|G Chain G, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|U Chain U, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 252
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 11/234 (4%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSA-AIGLRSKTHVVLGCVNKANSEL--SSHQKK 62
YD +T +SP GRL+QVEYA +A Q + ++ +R K V+ K +L +
Sbjct: 12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 71
Query: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR 122
IF + IG+ + G D R + ++E + Y Y +P L ++A+ +Q+ TQR
Sbjct: 72 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 131
Query: 123 SWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF----- 176
++ RP GV L +DE+ G +Y P+G Y Y+A A G + Q T LE F
Sbjct: 132 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 191
Query: 177 ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQK 230
++ +E + E +++ A+ + + L E K+ + V + F L E +++
Sbjct: 192 DHINEESWEKVVEFAITHMIDALGTEFSKNDL--EVGVATKDKFFTLSAENIEE 243
>pdb|1RYP|A Chain A, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|O Chain O, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|G Chain G, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|U Chain U, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|G Chain G, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|G Chain G, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|U Chain U, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|G Chain G, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|U Chain U, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|G Chain G, Proteasome Inhibition By Fellutamide B
pdb|3D29|U Chain U, Proteasome Inhibition By Fellutamide B
pdb|3E47|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|G Chain G, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|U Chain U, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|G Chain G, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|U Chain U, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|G Chain G, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|U Chain U, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|A Chain A, Proteasome Activator Complex
pdb|1VSY|O Chain O, Proteasome Activator Complex
pdb|3L5Q|A Chain A, Proteasome Activator Complex
pdb|3L5Q|C Chain C, Proteasome Activator Complex
pdb|3MG4|G Chain G, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|U Chain U, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|G Chain G, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|U Chain U, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|G Chain G, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|U Chain U, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|G Chain G, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|U Chain U, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|G Chain G, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|U Chain U, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|G Chain G, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|U Chain U, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|G Chain G, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|U Chain U, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|G Chain G, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|U Chain U, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|G Chain G, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|U Chain U, 20s Yeast Proteasome In Complex With Glidobactin
Length = 243
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 116/234 (49%), Gaps = 11/234 (4%)
Query: 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSA-AIGLRSKTHVVLGCVNKANSEL--SSHQKK 62
YD +T +SP GRL+QVEYA +A Q + ++ +R K V+ K +L +
Sbjct: 3 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSY 62
Query: 63 IFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR 122
IF + IG+ + G D R + ++E + Y Y +P L ++A+ +Q+ TQR
Sbjct: 63 IFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQR 122
Query: 123 SWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF----- 176
++ RP GV L +DE+ G +Y P+G Y Y+A A G + Q T LE F
Sbjct: 123 AYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKI 182
Query: 177 ENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQK 230
++ +E + E +++ A+ + + L E K+ + V + F L E +++
Sbjct: 183 DHINEESWEKVVEFAITHMIDALGTEFSKNDL--EVGVATKDKFFTLSAENIEE 234
>pdb|1YA7|H Chain H, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|I Chain I, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|J Chain J, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|K Chain K, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|L Chain L, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|M Chain M, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YA7|N Chain N, Implications For Interactions Of Proteasome With Pan And
Pa700 From The 1.9 A Structure Of A Proteasome-11s
Activator Complex
pdb|1YAR|H Chain H, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|I Chain I, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|J Chain J, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|K Chain K, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|L Chain L, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|M Chain M, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAR|N Chain N, Structure Of Archeabacterial 20s Proteasome Mutant D9s-
Pa26 Complex
pdb|1YAU|H Chain H, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|I Chain I, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|J Chain J, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|K Chain K, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|L Chain L, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|M Chain M, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|1YAU|N Chain N, Structure Of Archeabacterial 20s Proteasome- Pa26 Complex
pdb|3IPM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
pdb|3IPM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With The C- Terminus Of Pan
Length = 217
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 27 EAVKQGSAAIGLRSKTHVVLGC---VNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRV 83
+ ++ G+ +G+ K V++ V N + + KK+F++D + G+ IAGL D +V
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV 62
Query: 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAH 143
L RYM++E Y +P+ + L++ + Q + PY V LLV G+D H
Sbjct: 63 LVRYMKAELELYRLQRRVNMPIEAVATLLSN---MLNQVKYM-PYMVQLLVGGID-TAPH 117
Query: 144 LYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGE 202
++ +G E + GS S LE ++ E + DL+ A+ A + Q +
Sbjct: 118 VFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAK---QRD 174
Query: 203 TLKSSICTVAVV 214
+ + VAV+
Sbjct: 175 SASGGMIDVAVI 186
>pdb|1PMA|B Chain B, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|P Chain P, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Q Chain Q, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|R Chain R, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|S Chain S, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|T Chain T, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|U Chain U, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|V Chain V, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|W Chain W, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|X Chain X, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Y Chain Y, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|Z Chain Z, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|1 Chain 1, Proteasome From Thermoplasma Acidophilum
pdb|1PMA|2 Chain 2, Proteasome From Thermoplasma Acidophilum
Length = 211
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 91/192 (47%), Gaps = 12/192 (6%)
Query: 27 EAVKQGSAAIGLRSKTHVVLGC---VNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRV 83
+ ++ G+ +G+ K V++ V N + + KK+F++D + G+ IAGL D +V
Sbjct: 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQV 62
Query: 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAH 143
L RYM++E Y +P+ + L++ + Q + PY V LLV G+D H
Sbjct: 63 LVRYMKAELELYRLQRRVNMPIEAVATLLSN---MLNQVKYM-PYMVQLLVGGID-TAPH 117
Query: 144 LYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGE 202
++ +G E + GS S LE ++ E + DL+ A+ A + Q +
Sbjct: 118 VFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAK---QRD 174
Query: 203 TLKSSICTVAVV 214
+ + VAV+
Sbjct: 175 SASGGMIDVAVI 186
>pdb|3C91|H Chain H, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|I Chain I, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|J Chain J, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|K Chain K, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|L Chain L, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|M Chain M, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|N Chain N, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|V Chain V, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|W Chain W, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|X Chain X, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C91|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With An Open Gate
pdb|3C92|H Chain H, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|I Chain I, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|J Chain J, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|K Chain K, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|L Chain L, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|M Chain M, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|N Chain N, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|V Chain V, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|W Chain W, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|X Chain X, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Y Chain Y, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|Z Chain Z, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|1 Chain 1, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3C92|2 Chain 2, Thermoplasma Acidophilum 20s Proteasome With A Closed Gate
pdb|3JRM|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JRM|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JSE|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|H Chain H, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|I Chain I, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|J Chain J, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|K Chain K, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|L Chain L, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|M Chain M, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
pdb|3JTL|N Chain N, Crystal Structure Of Archaeal 20s Proteasome In Complex
With Mutated P26 Activator
Length = 203
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 12/186 (6%)
Query: 33 SAAIGLRSKTHVVLGC---VNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMR 89
+ +G+ K V++ V N + + KK+F++D + G+ IAGL D +VL RYM+
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 90 SECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCP 149
+E Y +P+ + L++ + Q + PY V LLV G+D H++
Sbjct: 61 AELELYRLQRRVNMPIEAVATLLSN---MLNQVKYM-PYMVQLLVGGID-TAPHVFSIDA 115
Query: 150 SGNYFEYQAFAIGSRSQAAKTYLERRF-ENFSESTREDLIKDALMAIRETLQGETLKSSI 208
+G E + GS S LE ++ E + DL+ A+ A + Q ++ +
Sbjct: 116 AGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAK---QRDSASGGM 172
Query: 209 CTVAVV 214
VAV+
Sbjct: 173 IDVAVI 178
>pdb|3H4P|AA Chain a, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|BB Chain b, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|CC Chain c, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|DD Chain d, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|EE Chain e, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|FF Chain f, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|GG Chain g, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|HH Chain h, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|II Chain i, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|JJ Chain j, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|KK Chain k, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|LL Chain l, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|MM Chain m, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
pdb|3H4P|NN Chain n, Proteasome 20s Core Particle From Methanocaldococcus
Jannaschii
Length = 219
Score = 57.4 bits (137), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 12/208 (5%)
Query: 33 SAAIGLRSKTHVVLGCVNKA---NSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMR 89
+ +GL V+L +A N KK++K+DD+I + IAG D + + R +
Sbjct: 2 TTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLI 61
Query: 90 SECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNC 148
+E Y +P L++ S P+ +++ G D +GA L+
Sbjct: 62 AEAKLYKMRTGRNIPPLACATLLSN----ILHSSRMFPFLTQIIIGGYDLLEGAKLFSLD 117
Query: 149 PSGNYFEYQAF-AIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSS 207
P G E + F A GS S A LE ++ + + E+ IK AL A++ ++ +T +
Sbjct: 118 PLGGMNEEKTFTATGSGSPIAYGVLEAGYDR--DMSVEEGIKLALNALKSAMERDTFSGN 175
Query: 208 ICTVAVVGAGEPFHILDQETVQKLIDSF 235
++AV+ + I + E ++K++DS
Sbjct: 176 GISLAVI-TKDGVKIFEDEEIEKILDSM 202
>pdb|1J2Q|H Chain H, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|I Chain I, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|J Chain J, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|K Chain K, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|L Chain L, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|M Chain M, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
pdb|1J2Q|N Chain N, 20s Proteasome In Complex With Calpain-inhibitor I From
Archaeoglobus Fulgidus
Length = 202
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 8/148 (5%)
Query: 33 SAAIGLRSKTHVVLGCVNKA---NSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMR 89
+ +GL K VV+ +A N S KKI+++ D + + AG D + L+R ++
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 90 SECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCP 149
E Y E P R + L + + R + PY V LL+ G+D +G +Y P
Sbjct: 61 IEANLYEIRRERK-PTVRAIATLTSNL-LNSYRYF--PYLVQLLIGGIDSEGKSIYSIDP 116
Query: 150 SGNYFEYQAF-AIGSRSQAAKTYLERRF 176
G E + A GS S A LE RF
Sbjct: 117 IGGAIEEKDIVATGSGSLTAYGVLEDRF 144
>pdb|3UNF|H Chain H, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|V Chain V, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|H Chain H, Mouse 20s Immunoproteasome
pdb|3UNH|V Chain V, Mouse 20s Immunoproteasome
Length = 234
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 37 GLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLSRYMRSEC- 92
GL + V+LG +A ++ K KI + I AG+ AD + +R S+
Sbjct: 5 GLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKME 64
Query: 93 INYSYTYESP--LPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPS 150
++ T P V R++ Q T ++ G L+V G+D G LY P
Sbjct: 65 LHALSTGREPRVATVTRILRQ--------TLFRYQGHVGASLVVGGVDLNGPQLYEVHPH 116
Query: 151 GNYFEYQAFAIGSRSQAAKTYLERRFE-NFSESTREDLIKDALMA 194
G+Y A+GS AA LE RF+ N + ++L+ +A+ A
Sbjct: 117 GSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITA 161
>pdb|3NZJ|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|2 Chain 2, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 261
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 87/198 (43%), Gaps = 16/198 (8%)
Query: 27 EAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRV 83
+A G+ +G++ VV+ ++ K K+ ++ I A AG AD
Sbjct: 24 KATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEA 83
Query: 84 LSRYMRSECINYS-YTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVG--LLVAGLDEK 140
+++ + S +S YT P V L Q+ Q +K +G L+VAG+D
Sbjct: 84 VTQLIGSNIELHSLYTSREPRVVSAL--------QMLKQHLFKYQGHIGAYLIVAGVDPT 135
Query: 141 GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQ 200
G+HL+ G+ ++GS S AA LE ++ + T+E+ IK A AI+ +
Sbjct: 136 GSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ--DLTKEEAIKLASDAIQAGIW 193
Query: 201 GETLKSSICTVAVVGAGE 218
+ S V V+ G+
Sbjct: 194 NDLGSGSNVDVCVMEIGK 211
>pdb|1FNT|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|H Chain H, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|V Chain V, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|H Chain H, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|V Chain V, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3UN4|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|H Chain H, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|V Chain V, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4G4S|I Chain I, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|H Chain H, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|V Chain V, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 232
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYS-YTYESPLPVGRLVVQLADKAQVCT 120
K+ ++ I A AG AD +++ + S +S YT P V L Q+
Sbjct: 33 KLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL--------QMLK 84
Query: 121 QRSWKRPYGVG--LLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN 178
Q +K +G L+VAG+D G+HL+ G+ ++GS S AA LE ++
Sbjct: 85 QHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 144
Query: 179 FSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218
+ T+E+ IK A AI+ + + S V V+ G+
Sbjct: 145 --DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 182
>pdb|1RYP|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|H Chain H, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|V Chain V, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|H Chain H, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|V Chain V, A Gated Channel Into The Proteasome Core Particle
pdb|1JD2|H Chain H, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|O Chain O, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|I Chain I, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|W Chain W, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|H Chain H, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|V Chain V, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|H Chain H, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|V Chain V, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|H Chain H, Proteasome Inhibition By Fellutamide B
pdb|3D29|V Chain V, Proteasome Inhibition By Fellutamide B
pdb|3E47|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|H Chain H, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|V Chain V, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|H Chain H, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|V Chain V, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|H Chain H, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|V Chain V, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|I Chain I, Proteasome Activator Complex
pdb|1VSY|W Chain W, Proteasome Activator Complex
pdb|3L5Q|M Chain M, Proteasome Activator Complex
pdb|3L5Q|Y Chain Y, Proteasome Activator Complex
pdb|3MG4|H Chain H, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|V Chain V, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|H Chain H, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|V Chain V, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|H Chain H, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|V Chain V, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|H Chain H, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|V Chain V, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|H Chain H, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|V Chain V, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|H Chain H, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|V Chain V, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|H Chain H, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|V Chain V, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|H Chain H, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|V Chain V, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|H Chain H, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|V Chain V, 20s Yeast Proteasome In Complex With Glidobactin
Length = 222
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 13/160 (8%)
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYS-YTYESPLPVGRLVVQLADKAQVCT 120
K+ ++ I A AG AD +++ + S +S YT P V L Q+
Sbjct: 33 KLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL--------QMLK 84
Query: 121 QRSWKRPYGVG--LLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN 178
Q +K +G L+VAG+D G+HL+ G+ ++GS S AA LE ++
Sbjct: 85 QHLFKYQGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 144
Query: 179 FSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218
+ T+E+ IK A AI+ + + S V V+ G+
Sbjct: 145 --DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 182
>pdb|1IRU|I Chain I, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|W Chain W, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 234
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 71/163 (43%), Gaps = 11/163 (6%)
Query: 37 GLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLSRYMRSECI 93
G+ K +VLG +A + K KI + +I AG AD + ++ + S
Sbjct: 5 GVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLE 64
Query: 94 NYSYTYESPLPVGRLV-VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGN 152
+S L GRL V A++ ++ G L++ G+D G HLY P G+
Sbjct: 65 LHS------LSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVDVTGPHLYSIYPHGS 118
Query: 153 YFEYQAFAIGSRSQAAKTYLERRFE-NFSESTREDLIKDALMA 194
+ +GS S AA E +F + E ++L+ +A+ A
Sbjct: 119 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAA 161
>pdb|1G0U|L Chain L, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|Z Chain Z, A Gated Channel Into The Proteasome Core Particle
pdb|2ZCY|L Chain L, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|Z Chain Z, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|L Chain L, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|Z Chain Z, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|4B4T|6 Chain 6, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 241
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 57 SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA 116
S ++ K+F D+I ++ G ADG L + ++ Y + + +L + A +
Sbjct: 56 SRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDK----KLSINSAAR- 110
Query: 117 QVCTQRSWKR--PYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLE 173
+ KR PY V ++AGLDE G Y+ P G+Y Q A G+ + +L+
Sbjct: 111 NIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLD 170
Query: 174 RR--FENFSESTREDLIKDAL--MAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQET 227
+ F+N E +K L +++ E ++ ++ S+ VG G I+ ++
Sbjct: 171 NQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG 230
Query: 228 VQK 230
V+K
Sbjct: 231 VRK 233
>pdb|1RYP|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|1 Chain 1, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|L Chain L, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|Z Chain Z, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1FNT|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|L Chain L, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|S Chain S, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|M Chain M, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|AA Chain a, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|L Chain L, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|Z Chain Z, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|L Chain L, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|Z Chain Z, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|L Chain L, Proteasome Inhibition By Fellutamide B
pdb|3D29|Z Chain Z, Proteasome Inhibition By Fellutamide B
pdb|3E47|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|L Chain L, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|Z Chain Z, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|L Chain L, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|Z Chain Z, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|L Chain L, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|Z Chain Z, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|M Chain M, Proteasome Activator Complex
pdb|1VSY|1 Chain 1, Proteasome Activator Complex
pdb|3L5Q|Q Chain Q, Proteasome Activator Complex
pdb|3L5Q|3 Chain 3, Proteasome Activator Complex
pdb|3MG4|L Chain L, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|Z Chain Z, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|L Chain L, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|Z Chain Z, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|L Chain L, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|Z Chain Z, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|L Chain L, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|Z Chain Z, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|L Chain L, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|Z Chain Z, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|L Chain L, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|Z Chain Z, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|L Chain L, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|Z Chain Z, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|L Chain L, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|Z Chain Z, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|M Chain M, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|L Chain L, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|Z Chain Z, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|L Chain L, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|Z Chain Z, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|L Chain L, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|Z Chain Z, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 222
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 83/183 (45%), Gaps = 14/183 (7%)
Query: 57 SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKA 116
S ++ K+F D+I ++ G ADG L + ++ Y + + +L + A +
Sbjct: 37 SRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDK----KLSINSAAR- 91
Query: 117 QVCTQRSWKR--PYGVGLLVAGLDEKGAHLYYNC-PSGNYFEYQAFAIGSRSQAAKTYLE 173
+ KR PY V ++AGLDE G Y+ P G+Y Q A G+ + +L+
Sbjct: 92 NIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLD 151
Query: 174 RR--FENFSESTREDLIKDAL--MAIRETLQ--GETLKSSICTVAVVGAGEPFHILDQET 227
+ F+N E +K L +++ E ++ ++ S+ VG G I+ ++
Sbjct: 152 NQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG 211
Query: 228 VQK 230
V+K
Sbjct: 212 VRK 214
>pdb|3UNB|H Chain H, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|V Chain V, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|JJ Chain j, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|XX Chain x, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|H Chain H, Mouse Constitutive 20s Proteasome
pdb|3UNE|V Chain V, Mouse Constitutive 20s Proteasome
pdb|3UNE|JJ Chain j, Mouse Constitutive 20s Proteasome
pdb|3UNE|XX Chain x, Mouse Constitutive 20s Proteasome
Length = 234
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 11/163 (6%)
Query: 37 GLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLSRYMRSECI 93
G+ K +VLG +A + K KI + +I AG AD + ++ + S
Sbjct: 5 GVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLE 64
Query: 94 NYSYTYESPLPVGRLV-VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGN 152
+S T GRL V A++ ++ G L++ G+D G HLY P G+
Sbjct: 65 LHSLT------TGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGS 118
Query: 153 YFEYQAFAIGSRSQAAKTYLERRFE-NFSESTREDLIKDALMA 194
+ +GS S AA E +F + E + L+ +A+ A
Sbjct: 119 TDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAA 161
>pdb|3NZJ|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|4B4T|1 Chain 1, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 215
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 11/169 (6%)
Query: 29 VKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLS 85
V G++ + + K V+LG ++ + + K+ +V D I +G AD + ++
Sbjct: 16 VSLGTSIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 75
Query: 86 RYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLY 145
++ Y+ Y +P V ++C + K G++VAG D+K
Sbjct: 76 DIVQYHLELYTSQYGTPSTETAASVF----KELCYEN--KDNLTAGIIVAGYDDKNKGEV 129
Query: 146 YNCPSGNYFEYQAFAI-GSRSQAAKTYLERRF-ENFSESTREDLIKDAL 192
Y P G +AI GS S Y ++ F EN S+ D IK +L
Sbjct: 130 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 178
>pdb|1RYP|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
Length = 205
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 42/169 (24%), Positives = 72/169 (42%), Gaps = 11/169 (6%)
Query: 29 VKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLS 85
V G++ + + K V+LG ++ + + K+ +V D I +G AD + ++
Sbjct: 6 VSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIA 65
Query: 86 RYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLY 145
++ Y+ Y +P V ++C + K G++VAG D+K
Sbjct: 66 DIVQYHLELYTSQYGTPSTETAASVF----KELCYEN--KDNLTAGIIVAGYDDKNKGEV 119
Query: 146 YNCPSGNYFEYQAFAI-GSRSQAAKTYLERRF-ENFSESTREDLIKDAL 192
Y P G +AI GS S Y ++ F EN S+ D IK +L
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSL 168
>pdb|3UNB|K Chain K, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Y Chain Y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|MM Chain m, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|1 Chain 1, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|K Chain K, Mouse Constitutive 20s Proteasome
pdb|3UNE|Y Chain Y, Mouse Constitutive 20s Proteasome
pdb|3UNE|MM Chain m, Mouse Constitutive 20s Proteasome
pdb|3UNE|1 Chain 1, Mouse Constitutive 20s Proteasome
Length = 205
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 12/120 (10%)
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCT 120
KK+ +++ ++ +AG AD R + +C Y + R+ V A K
Sbjct: 32 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKE-----RISVAAASKLLANM 86
Query: 121 QRSWKRPYGVGL----LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 176
+K G+GL ++ G D++G LYY GN AF++GS S A ++R +
Sbjct: 87 VYQYK---GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGTAFSVGSGSVYAYGVMDRGY 143
>pdb|1G65|N Chain N, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|2 Chain 2, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|N Chain N, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|2 Chain 2, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|N Chain N, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|U Chain U, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|H Chain H, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|V Chain V, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|N Chain N, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|2 Chain 2, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|N Chain N, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|2 Chain 2, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|N Chain N, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|1 Chain 1, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|N Chain N, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|1 Chain 1, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|N Chain N, Proteasome Inhibition By Fellutamide B
pdb|3D29|2 Chain 2, Proteasome Inhibition By Fellutamide B
pdb|3E47|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|N Chain N, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|2 Chain 2, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|N Chain N, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|2 Chain 2, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|N Chain N, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|2 Chain 2, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3MG4|N Chain N, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|2 Chain 2, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|N Chain N, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|2 Chain 2, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|N Chain N, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|2 Chain 2, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|N Chain N, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|2 Chain 2, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|N Chain N, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|2 Chain 2, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|N Chain N, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|BB Chain b, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|N Chain N, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|2 Chain 2, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|N Chain N, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|BB Chain b, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4G4S|H Chain H, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|N Chain N, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|BB Chain b, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|N Chain N, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|BB Chain b, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|N Chain N, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|BB Chain b, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 196
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
K+ +V D I +G AD + ++ ++ Y+ Y +P V ++C +
Sbjct: 33 KLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAASVF----KELCYE 88
Query: 122 RSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAI-GSRSQAAKTYLERRF-ENF 179
K G++VAG D+K Y P G +AI GS S Y ++ F EN
Sbjct: 89 N--KDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 146
Query: 180 SESTREDLIKDAL 192
S+ D IK +L
Sbjct: 147 SKEETVDFIKHSL 159
>pdb|1VSY|H Chain H, Proteasome Activator Complex
pdb|1VSY|V Chain V, Proteasome Activator Complex
pdb|3L5Q|B Chain B, Proteasome Activator Complex
pdb|3L5Q|D Chain D, Proteasome Activator Complex
Length = 196
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
K+ +V D I +G AD + ++ ++ Y+ Y +P V ++C +
Sbjct: 33 KLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGTPSTETAASVF----KELCYE 88
Query: 122 RSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAI-GSRSQAAKTYLERRF-ENF 179
K G++VAG D+K Y P G +AI GS S Y ++ F EN
Sbjct: 89 N--KDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENM 146
Query: 180 SESTREDLIKDAL 192
S+ D IK +L
Sbjct: 147 SKEETVDFIKHSL 159
>pdb|2FNC|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
Length = 381
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 2 FRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK 61
+N YDT + +S G+L+ V YAMEAV + +K +V V K EL K
Sbjct: 82 LKNFYDTALKAFSYGGKLYGVPYAMEAVAL------IYNKDYV--DSVPKTMDELIEKAK 133
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECI-NY-SYTY-ESPLPVGRLVVQLADKAQV 118
+I D+ G + G D V + Y + I Y Y + E+P + + LA++ V
Sbjct: 134 QI---DEEYGGEVRGFIYD--VANFYFSAPFILGYGGYVFKETPQGLDVTDIGLANEGAV 188
Query: 119 CTQRSWKRPYGVGLLVAG 136
+ KR G+L G
Sbjct: 189 KGAKLIKRMIDEGVLTPG 206
>pdb|1IRU|M Chain M, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|1 Chain 1, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 213
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 85/206 (41%), Gaps = 22/206 (10%)
Query: 29 VKQGSAAIGLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLS 85
V G + + + ++ + + S H + K +K+ D + +G D L+
Sbjct: 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLT 65
Query: 86 RYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLY 145
+ + + Y ++ + G + L+ + ++R + PY V ++ GLDE+G
Sbjct: 66 KIIEARLKMYKHSNNKAMTTGAIAAMLS--TILYSRRFF--PYYVYNIIGGLDEEGKGAV 121
Query: 146 YNC-PSGNYFEYQAFAIGSRSQAAKTYLERR--FEN--------FSESTREDLIKDALM- 193
Y+ P G+Y A GS S + L+ + F+N S L+KD +
Sbjct: 122 YSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFIS 181
Query: 194 -AIRETLQGETLKSSICTVAVVGAGE 218
A R+ G+ L+ IC V G E
Sbjct: 182 AAERDVYTGDALR--ICIVTKEGIRE 205
>pdb|1IRU|L Chain L, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Z Chain Z, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 204
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 12/120 (10%)
Query: 61 KKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCT 120
KK+ +++ ++ +AG AD R + +C Y + R+ V A K
Sbjct: 32 KKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKE-----RISVAAASKLLANM 86
Query: 121 QRSWKRPYGVGL----LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 176
+K G+GL ++ G D++G LYY GN F++GS S A ++R +
Sbjct: 87 VYQYK---GMGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGY 143
>pdb|3UNB|L Chain L, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|Z Chain Z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|NN Chain n, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|2 Chain 2, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|L Chain L, Mouse Constitutive 20s Proteasome
pdb|3UNE|Z Chain Z, Mouse Constitutive 20s Proteasome
pdb|3UNE|NN Chain n, Mouse Constitutive 20s Proteasome
pdb|3UNE|2 Chain 2, Mouse Constitutive 20s Proteasome
pdb|3UNF|L Chain L, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Z Chain Z, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|L Chain L, Mouse 20s Immunoproteasome
pdb|3UNH|Z Chain Z, Mouse 20s Immunoproteasome
Length = 213
Score = 34.3 bits (77), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 81/204 (39%), Gaps = 22/204 (10%)
Query: 31 QGSAAIGLRSKTHVVLGCVNKANSELSSHQK---KIFKVDDHIGVAIAGLTADGRVLSRY 87
G + + + ++ + + S H + K +K+ D + +G D L++
Sbjct: 8 NGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKI 67
Query: 88 MRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYN 147
+ + Y ++ + G + L+ + ++R + PY V ++ GLDE+G Y+
Sbjct: 68 IEARLKMYKHSNNKAMTTGAIAAMLS--TILYSRRFF--PYYVYNIIGGLDEEGKGAVYS 123
Query: 148 C-PSGNYFEYQAFAIGSRSQAAKTYLERR--FENFSESTREDLIKDALM----------A 194
P G+Y A GS S + L+ + F+N L D M A
Sbjct: 124 FDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLTLDRAMRLVKDVFISAA 183
Query: 195 IRETLQGETLKSSICTVAVVGAGE 218
R+ G+ L+ IC V G E
Sbjct: 184 ERDVYTGDALR--ICIVTKEGIRE 205
>pdb|1RYP|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|J Chain J, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|X Chain X, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G0U|J Chain J, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|X Chain X, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1JD2|J Chain J, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|Q Chain Q, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1Z7Q|K Chain K, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|Y Chain Y, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2F16|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|J Chain J, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|X Chain X, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|J Chain J, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|X Chain X, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2ZCY|J Chain J, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|X Chain X, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|J Chain J, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|X Chain X, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3D29|J Chain J, Proteasome Inhibition By Fellutamide B
pdb|3D29|X Chain X, Proteasome Inhibition By Fellutamide B
pdb|3E47|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|J Chain J, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|X Chain X, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|K Chain K, Proteasome Activator Complex
pdb|1VSY|Y Chain Y, Proteasome Activator Complex
pdb|3L5Q|O Chain O, Proteasome Activator Complex
pdb|3L5Q|1 Chain 1, Proteasome Activator Complex
pdb|3NZJ|J Chain J, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|X Chain X, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|J Chain J, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|X Chain X, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG4|J Chain J, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|X Chain X, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|J Chain J, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|X Chain X, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG6|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3OKJ|J Chain J, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|X Chain X, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|J Chain J, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|X Chain X, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|J Chain J, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|X Chain X, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3UN4|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|J Chain J, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|X Chain X, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3SDI|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|J Chain J, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|X Chain X, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|J Chain J, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|X Chain X, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4B4T|4 Chain 4, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|K Chain K, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4FZC|J Chain J, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|X Chain X, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|J Chain J, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|X Chain X, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4INR|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|J Chain J, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|X Chain X, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 198
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 11/111 (9%)
Query: 36 IGLRSKTHVVLG---CVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSEC 92
+G+R + V+L V + S L K ++ H ++ AG D + Y+++
Sbjct: 5 LGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANI 64
Query: 93 INYSY--TYE-SPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK 140
YS YE SP V V Q ++ +RPY V +L+ G D+K
Sbjct: 65 QLYSIREDYELSPQAVSSFVRQ-----ELAKSIRSRRPYQVNVLIGGYDKK 110
>pdb|3UNF|K Chain K, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|Y Chain Y, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|K Chain K, Mouse 20s Immunoproteasome
pdb|3UNH|Y Chain Y, Mouse 20s Immunoproteasome
Length = 204
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 52 ANSELSS-HQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVG-RLV 109
A S +SS K+ +++ ++ ++G AD + R + EC Y L G R+
Sbjct: 22 AGSYISSLRMNKVIEINPYLLGTMSGCAADCQYWERLLAKECRLYY------LRNGERIS 75
Query: 110 VQLADKAQVCTQRSWKRPYGVGL----LVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRS 165
V A K ++ G+GL ++ G D+KG LYY +G Q F+ GS +
Sbjct: 76 VSAASKLLSNMMLQYR---GMGLSMGSMICGWDKKGPGLYYVDDNGTRLSGQMFSTGSGN 132
Query: 166 QAAKTYLERRF-ENFSESTREDLIKDAL 192
A ++ + ++ S DL + A+
Sbjct: 133 TYAYGVMDSGYRQDLSPEEAYDLGRRAI 160
>pdb|3UNB|N Chain N, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|BB Chain b, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|PP Chain p, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|4 Chain 4, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|N Chain N, Mouse Constitutive 20s Proteasome
pdb|3UNE|BB Chain b, Mouse Constitutive 20s Proteasome
pdb|3UNE|PP Chain p, Mouse Constitutive 20s Proteasome
pdb|3UNE|4 Chain 4, Mouse Constitutive 20s Proteasome
Length = 205
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 27/137 (19%)
Query: 62 KIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQ 121
K+ + DHI +G AD + ++ + + Y + S ++L + V T
Sbjct: 33 KLTPIHDHIFCCRSGSAADTQAVA-----DAVTYQLGFHS--------IELNEPPLVHTA 79
Query: 122 RS--------WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 173
S ++ G+++AG D + Y+ P G Q+FAIG + +Y+
Sbjct: 80 ASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGG---SGSSYI- 135
Query: 174 RRFENFSESTREDLIKD 190
+ + RE + KD
Sbjct: 136 --YGYVDATYREGMTKD 150
>pdb|3UNB|J Chain J, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|X Chain X, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|LL Chain l, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|ZZ Chain z, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|J Chain J, Mouse Constitutive 20s Proteasome
pdb|3UNE|X Chain X, Mouse Constitutive 20s Proteasome
pdb|3UNE|LL Chain l, Mouse Constitutive 20s Proteasome
pdb|3UNE|ZZ Chain z, Mouse Constitutive 20s Proteasome
pdb|3UNF|J Chain J, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|X Chain X, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|J Chain J, Mouse 20s Immunoproteasome
pdb|3UNH|X Chain X, Mouse 20s Immunoproteasome
Length = 201
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 36 IGLRSKTHVVLGCVNKANS---ELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSEC 92
IG++ +V++ A S ++ K+FK+ + I + G D + Y++
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNV 64
Query: 93 INYSYT--YE-SPLPVGRLVVQ-LADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYY 146
Y YE SP + LAD C + + PY V LL+AG DE +G LYY
Sbjct: 65 QLYKMRNGYELSPTAAANFTRRNLAD----CLRS--RTPYHVNLLLAGYDEHEGPALYY 117
>pdb|1IRU|K Chain K, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|Y Chain Y, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 201
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 14/119 (11%)
Query: 36 IGLRSKTHVVLGCVNKANS---ELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSEC 92
IG++ +V++ A S ++ K+FK+ + I + G D + Y++
Sbjct: 5 IGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNV 64
Query: 93 INYSYT--YE-SPLPVGRLVVQ-LADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYY 146
Y YE SP + LAD C + + PY V LL+AG DE +G LYY
Sbjct: 65 QLYKMRNGYELSPTAAANFTRRNLAD----CLRS--RTPYHVNLLLAGYDEHEGPALYY 117
>pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver
pdb|1GQ2|B Chain B, Malic Enzyme From Pigeon Liver
pdb|1GQ2|C Chain C, Malic Enzyme From Pigeon Liver
pdb|1GQ2|D Chain D, Malic Enzyme From Pigeon Liver
pdb|1GQ2|E Chain E, Malic Enzyme From Pigeon Liver
pdb|1GQ2|F Chain F, Malic Enzyme From Pigeon Liver
pdb|1GQ2|G Chain G, Malic Enzyme From Pigeon Liver
pdb|1GQ2|H Chain H, Malic Enzyme From Pigeon Liver
pdb|1GQ2|I Chain I, Malic Enzyme From Pigeon Liver
pdb|1GQ2|J Chain J, Malic Enzyme From Pigeon Liver
pdb|1GQ2|K Chain K, Malic Enzyme From Pigeon Liver
pdb|1GQ2|L Chain L, Malic Enzyme From Pigeon Liver
pdb|1GQ2|M Chain M, Malic Enzyme From Pigeon Liver
pdb|1GQ2|N Chain N, Malic Enzyme From Pigeon Liver
pdb|1GQ2|O Chain O, Malic Enzyme From Pigeon Liver
pdb|1GQ2|P Chain P, Malic Enzyme From Pigeon Liver
Length = 555
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 56 LSSHQKKIFKVDDHI----GVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQ 111
L ++ K +D I VA+AGL A R+ + + + E+ L + L+V
Sbjct: 244 LHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVX 303
Query: 112 LADKAQVCTQRSWKRPYGV---GLLVAG 136
K V + + KR + V GL+V G
Sbjct: 304 AXQKEGVSKEEAIKRIWXVDSKGLIVKG 331
>pdb|2A57|A Chain A, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|B Chain B, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|C Chain C, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|D Chain D, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A57|E Chain E, Structure Of 6,7-dimthyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
6- Carboxyethyl-7-oxo-8-ribityllumazine
pdb|2A58|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A58|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound
Riboflavin
pdb|2A59|A Chain A, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|B Chain B, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|C Chain C, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|D Chain D, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
pdb|2A59|E Chain E, Structure Of 6,7-dimethyl-8-ribityllumazine Synthase From
Schizosaccharomyces Pombe Mutant W27y With Bound Ligand
5-nitroso-6- Ribitylamino-2,4(1h,3h)-pyrimidinedione
Length = 159
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 3 RNQYDTDVTTWS-PAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE 55
RN YD + G EY EAV G +GL S V+LG + N E
Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEE 128
>pdb|1KZ4|A Chain A, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|B Chain B, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|C Chain C, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|D Chain D, Mutant Enzyme W63y Lumazine Synthase From S.pombe
pdb|1KZ4|E Chain E, Mutant Enzyme W63y Lumazine Synthase From S.pombe
Length = 159
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 3 RNQYDTDVTTWS-PAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE 55
RN YD + G EY EAV G +GL S V+LG + N E
Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEE 128
>pdb|1KZ1|A Chain A, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|B Chain B, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|C Chain C, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|D Chain D, Mutant Enzyme W27g Lumazine Synthase From S.pombe
pdb|1KZ1|E Chain E, Mutant Enzyme W27g Lumazine Synthase From S.pombe
Length = 159
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 3 RNQYDTDVTTWS-PAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE 55
RN YD + G EY EAV G +GL S V+LG + N E
Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEE 128
>pdb|2GHA|A Chain A, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHA|B Chain B, Thermotoga Maritima Maltotriose Binding Protein Bound With
Maltotriose
pdb|2GHB|A Chain A, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|B Chain B, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
pdb|2GHB|C Chain C, Thermotoga Maritima Maltotriose Binding Protein, Ligand
Free Form
Length = 382
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 2 FRNQYDTDVTTWSPAGRLFQVEYAMEAV 29
+N Y+T + +S G+L+ + YAMEA+
Sbjct: 84 LKNFYETALNAFSYGGKLYGIPYAMEAI 111
>pdb|1G0U|I Chain I, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|W Chain W, A Gated Channel Into The Proteasome Core Particle
pdb|1FNT|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|I Chain I, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|W Chain W, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|I Chain I, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|W Chain W, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3NZJ|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3MG6|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3UN4|I Chain I, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|W Chain W, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|I Chain I, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|W Chain W, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|3 Chain 3, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|J Chain J, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|I Chain I, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|W Chain W, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 205
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 31 QGSAAIGLRSKTHVVLGCVNKANSE---LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRY 87
G + + K V + C + S+ +S+ +KIF H+ + I GL D L+
Sbjct: 8 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 66
Query: 88 MRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKR---PYGVGLLVAGLDEK 140
R + Y E ++ Q+ + ++R PY VG +VAG++ K
Sbjct: 67 FRYKTNLYKLKEER-------AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSK 115
>pdb|1RYP|J Chain J, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|X Chain X, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|I Chain I, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|W Chain W, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|I Chain I, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|P Chain P, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|I Chain I, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|W Chain W, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|I Chain I, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|W Chain W, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|I Chain I, Proteasome Inhibition By Fellutamide B
pdb|3D29|W Chain W, Proteasome Inhibition By Fellutamide B
pdb|3E47|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|I Chain I, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|W Chain W, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|I Chain I, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|W Chain W, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|I Chain I, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|W Chain W, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|J Chain J, Proteasome Activator Complex
pdb|1VSY|X Chain X, Proteasome Activator Complex
pdb|3L5Q|N Chain N, Proteasome Activator Complex
pdb|3L5Q|Z Chain Z, Proteasome Activator Complex
pdb|3MG4|I Chain I, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|W Chain W, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|I Chain I, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|W Chain W, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|I Chain I, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|W Chain W, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OEU|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3TDD|I Chain I, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|W Chain W, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|I Chain I, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|W Chain W, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SDI|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|I Chain I, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|W Chain W, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|4GK7|I Chain I, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|W Chain W, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|I Chain I, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|W Chain W, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|I Chain I, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|W Chain W, 20s Yeast Proteasome In Complex With Glidobactin
Length = 204
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 49/116 (42%), Gaps = 14/116 (12%)
Query: 31 QGSAAIGLRSKTHVVLGCVNKANSE---LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRY 87
G + + K V + C + S+ +S+ +KIF H+ + I GL D L+
Sbjct: 7 NGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEM 65
Query: 88 MRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKR---PYGVGLLVAGLDEK 140
R + Y E ++ Q+ + ++R PY VG +VAG++ K
Sbjct: 66 FRYKTNLYKLKEER-------AIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSK 114
>pdb|1KYV|A Chain A, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|B Chain B, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|C Chain C, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|D Chain D, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYV|E Chain E, Lumazine Synthase From S.pombe Bound To Riboflavin
pdb|1KYX|A Chain A, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|B Chain B, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|C Chain C, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|D Chain D, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYX|E Chain E, Lumazine Synthase From S.pombe Bound To
Carboxyethyllumazine
pdb|1KYY|A Chain A, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|B Chain B, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|C Chain C, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|D Chain D, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
pdb|1KYY|E Chain E, Lumazine Synthase From S.pombe Bound To
Nitropyrimidinedione
Length = 159
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 3 RNQYDTDVTTWS-PAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE 55
RN YD + G EY EAV G +GL S V+LG + N E
Sbjct: 75 RNTYDAVIGIGVLIKGSTMHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEE 128
>pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|B Chain B, Crystal Structure Of A Human Malic Enzyme
pdb|2AW5|C Chain C, Crystal Structure Of A Human Malic Enzyme
Length = 575
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 72 VAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGV- 130
VA+AGL A R+ + + I + E+ L + L+V +K + +++ K+ + V
Sbjct: 287 VAVAGLLAALRITKNKLSDQTILFQGAGEAALGIAHLIVMALEKEGLPKEKAIKKIWLVD 346
Query: 131 --GLLVAG 136
GL+V G
Sbjct: 347 SKGLIVKG 354
>pdb|1IRU|J Chain J, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|X Chain X, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 31 QGSAAIGLRSKTHVVLGCVNKANSE---LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRY 87
G A + ++ K V + + + +++ +KIF + D + + +AGL D + +++
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 88 MRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKR--PYGVGLLVAGLDEK 140
++ Y L GR + + V KR PY ++AGLD K
Sbjct: 67 LKFRLNLYE------LKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPK 115
>pdb|3UNB|I Chain I, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|W Chain W, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|KK Chain k, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNB|YY Chain y, Mouse Constitutive 20s Proteasome In Complex With Pr-957
pdb|3UNE|I Chain I, Mouse Constitutive 20s Proteasome
pdb|3UNE|W Chain W, Mouse Constitutive 20s Proteasome
pdb|3UNE|KK Chain k, Mouse Constitutive 20s Proteasome
pdb|3UNE|YY Chain y, Mouse Constitutive 20s Proteasome
pdb|3UNF|I Chain I, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNF|W Chain W, Mouse 20s Immunoproteasome In Complex With Pr-957
pdb|3UNH|I Chain I, Mouse 20s Immunoproteasome
pdb|3UNH|W Chain W, Mouse 20s Immunoproteasome
Length = 205
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 50/115 (43%), Gaps = 11/115 (9%)
Query: 31 QGSAAIGLRSKTHVVLGCVNKANSE---LSSHQKKIFKVDDHIGVAIAGLTADGRVLSRY 87
G A + ++ K V + + + +++ +KIF + D + + +AGL D + +++
Sbjct: 7 NGGAVMAMKGKNCVAIAADRRFGIQAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQR 66
Query: 88 MRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKR--PYGVGLLVAGLDEK 140
++ Y L GR + + V KR PY ++AGLD K
Sbjct: 67 LKFRLNLYE------LKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPK 115
>pdb|1IRU|H Chain H, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
pdb|1IRU|V Chain V, Crystal Structure Of The Mammalian 20s Proteasome At 2.75
A Resolution
Length = 205
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 131 GLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIG 162
G+++AG D + Y+ P G Q+FAIG
Sbjct: 97 GIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIG 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,919,446
Number of Sequences: 62578
Number of extensions: 266912
Number of successful extensions: 894
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 96
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)