Query 023620
Match_columns 279
No_of_seqs 176 out of 1276
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 05:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0863 20S proteasome, regula 100.0 9.7E-69 2.1E-73 454.5 25.9 240 1-240 1-241 (264)
2 PTZ00246 proteasome subunit al 100.0 3.4E-62 7.4E-67 437.6 29.5 238 1-241 1-247 (253)
3 cd03750 proteasome_alpha_type_ 100.0 3.5E-62 7.6E-67 431.0 28.7 224 6-232 1-226 (227)
4 KOG0176 20S proteasome, regula 100.0 1.1E-62 2.4E-67 409.0 21.8 232 1-235 1-241 (241)
5 PRK03996 proteasome subunit al 100.0 5.5E-60 1.2E-64 420.5 29.1 230 3-235 7-239 (241)
6 cd03749 proteasome_alpha_type_ 100.0 8.6E-60 1.9E-64 411.5 26.5 210 6-215 1-211 (211)
7 cd03751 proteasome_alpha_type_ 100.0 4.9E-59 1.1E-63 406.9 25.8 210 3-214 1-212 (212)
8 TIGR03633 arc_protsome_A prote 100.0 6.9E-59 1.5E-63 409.2 26.8 220 5-227 2-224 (224)
9 cd03752 proteasome_alpha_type_ 100.0 2.5E-58 5.5E-63 402.7 25.9 209 4-214 1-213 (213)
10 COG0638 PRE1 20S proteasome, a 100.0 2.2E-57 4.9E-62 402.1 28.8 230 4-237 1-234 (236)
11 cd03755 proteasome_alpha_type_ 100.0 3.3E-57 7.1E-62 394.1 25.3 204 6-214 1-207 (207)
12 cd03754 proteasome_alpha_type_ 100.0 5.2E-57 1.1E-61 395.0 25.9 209 5-214 1-215 (215)
13 cd03756 proteasome_alpha_arche 100.0 7.4E-57 1.6E-61 392.9 26.2 208 5-215 1-210 (211)
14 KOG0183 20S proteasome, regula 100.0 9.3E-58 2E-62 383.8 18.9 234 4-240 2-238 (249)
15 KOG0181 20S proteasome, regula 100.0 3.4E-57 7.5E-62 375.5 19.2 231 1-235 1-233 (233)
16 KOG0178 20S proteasome, regula 100.0 1.2E-56 2.5E-61 376.4 22.5 237 1-239 1-244 (249)
17 cd03753 proteasome_alpha_type_ 100.0 2.4E-55 5.3E-60 383.8 25.0 206 6-214 1-213 (213)
18 cd01911 proteasome_alpha prote 100.0 2.7E-55 5.8E-60 382.5 24.6 206 6-214 1-209 (209)
19 KOG0184 20S proteasome, regula 100.0 2E-54 4.3E-59 365.5 21.1 231 3-236 5-239 (254)
20 KOG0182 20S proteasome, regula 100.0 1.7E-53 3.7E-58 357.5 24.7 234 4-238 7-245 (246)
21 TIGR03691 20S_bact_alpha prote 100.0 1E-46 2.2E-51 332.2 25.1 203 22-232 17-228 (228)
22 PTZ00488 Proteasome subunit be 100.0 4.5E-46 9.7E-51 331.8 25.4 204 28-240 35-243 (247)
23 TIGR03690 20S_bact_beta protea 100.0 2.7E-45 5.8E-50 321.8 25.3 205 31-239 1-218 (219)
24 cd03760 proteasome_beta_type_4 100.0 5.4E-45 1.2E-49 314.9 23.4 189 31-222 1-194 (197)
25 cd03758 proteasome_beta_type_2 100.0 6.7E-45 1.5E-49 313.5 23.9 186 33-223 2-191 (193)
26 cd03761 proteasome_beta_type_5 100.0 1.7E-44 3.8E-49 309.6 23.7 184 33-223 1-187 (188)
27 cd03759 proteasome_beta_type_3 100.0 3.1E-44 6.7E-49 309.8 23.1 182 31-218 2-188 (195)
28 TIGR03634 arc_protsome_B prote 100.0 2.8E-43 6.1E-48 301.0 23.3 181 32-218 1-184 (185)
29 cd03757 proteasome_beta_type_1 100.0 4.9E-43 1.1E-47 306.0 23.5 186 29-218 5-201 (212)
30 cd03764 proteasome_beta_archea 100.0 8.6E-43 1.9E-47 298.8 24.0 185 33-224 1-188 (188)
31 cd03763 proteasome_beta_type_7 100.0 1.6E-42 3.5E-47 297.5 23.5 184 33-224 1-187 (189)
32 cd03765 proteasome_beta_bacter 100.0 2.8E-42 6E-47 304.8 23.7 182 34-218 2-201 (236)
33 PF00227 Proteasome: Proteasom 100.0 9E-42 2E-46 291.9 23.1 184 29-214 1-190 (190)
34 cd03762 proteasome_beta_type_6 100.0 1.2E-41 2.7E-46 291.7 23.7 179 33-218 1-183 (188)
35 cd01912 proteasome_beta protea 100.0 3.8E-41 8.3E-46 288.4 23.4 183 33-222 1-187 (189)
36 cd01906 proteasome_protease_Hs 100.0 4.3E-40 9.3E-45 279.7 23.4 178 33-214 1-182 (182)
37 KOG0179 20S proteasome, regula 100.0 1.2E-34 2.7E-39 243.4 18.1 185 28-218 25-224 (235)
38 KOG0175 20S proteasome, regula 100.0 8.1E-35 1.8E-39 251.1 16.7 208 29-243 68-278 (285)
39 KOG0177 20S proteasome, regula 100.0 1.6E-34 3.5E-39 239.4 17.4 187 33-224 2-192 (200)
40 KOG0173 20S proteasome, regula 100.0 4.1E-33 8.9E-38 240.0 17.2 186 26-218 31-219 (271)
41 KOG0185 20S proteasome, regula 100.0 2.7E-33 5.9E-38 238.9 15.0 220 9-233 12-245 (256)
42 KOG0174 20S proteasome, regula 100.0 7.2E-33 1.6E-37 230.3 15.2 197 28-231 15-216 (224)
43 PRK05456 ATP-dependent proteas 100.0 3.7E-30 8E-35 217.3 19.9 165 32-213 1-171 (172)
44 KOG0180 20S proteasome, regula 100.0 3.7E-30 7.9E-35 210.5 16.9 183 30-218 6-193 (204)
45 cd01913 protease_HslV Protease 100.0 1.5E-29 3.2E-34 212.6 19.4 162 33-213 1-170 (171)
46 cd01901 Ntn_hydrolase The Ntn 100.0 7.7E-29 1.7E-33 204.1 21.3 159 33-196 1-163 (164)
47 TIGR03692 ATP_dep_HslV ATP-dep 100.0 9.1E-29 2E-33 207.8 19.7 164 33-213 1-170 (171)
48 PF10584 Proteasome_A_N: Prote 99.6 9.5E-16 2.1E-20 85.3 1.7 23 6-28 1-23 (23)
49 COG5405 HslV ATP-dependent pro 99.3 2.3E-11 5E-16 99.4 12.9 168 31-215 3-176 (178)
50 COG3484 Predicted proteasome-t 99.1 1.9E-09 4E-14 91.4 13.0 183 33-218 2-202 (255)
51 PF09894 DUF2121: Uncharacteri 96.0 0.87 1.9E-05 39.0 17.2 154 33-217 2-180 (194)
52 COG4079 Uncharacterized protei 95.1 1 2.2E-05 40.0 13.7 169 33-231 2-196 (293)
53 KOG3361 Iron binding protein i 74.0 7.2 0.00016 31.5 4.7 84 145-242 71-154 (157)
54 PF07462 MSP1_C: Merozoite sur 73.2 6.7 0.00014 38.8 5.2 56 168-237 193-256 (574)
55 cd06404 PB1_aPKC PB1 domain is 68.1 33 0.00071 25.5 6.8 56 180-241 18-74 (83)
56 smart00481 POLIIIAc DNA polyme 40.9 29 0.00063 23.8 2.6 32 11-42 6-38 (67)
57 PF07499 RuvA_C: RuvA, C-termi 40.7 23 0.0005 23.0 1.9 33 160-193 12-44 (47)
58 PF12566 DUF3748: Protein of u 39.3 24 0.00052 27.9 2.1 26 8-49 70-95 (122)
59 PRK09732 hypothetical protein; 37.3 1.1E+02 0.0023 24.8 5.7 42 180-225 5-49 (134)
60 cd06402 PB1_p62 The PB1 domain 33.8 1.4E+02 0.0031 22.2 5.5 50 181-236 26-76 (87)
61 PF00178 Ets: Ets-domain; Int 31.0 98 0.0021 22.9 4.2 27 211-237 21-48 (85)
62 smart00413 ETS erythroblast tr 28.1 89 0.0019 23.4 3.5 27 210-236 20-47 (87)
63 COG3193 GlcG Uncharacterized p 27.3 2E+02 0.0044 23.5 5.7 36 180-219 6-41 (141)
64 PF03928 DUF336: Domain of unk 27.3 1.1E+02 0.0024 24.1 4.3 41 180-224 1-44 (132)
65 PF08529 NusA_N: NusA N-termin 25.8 2.2E+02 0.0048 22.2 5.7 44 180-223 13-56 (122)
66 COG4245 TerY Uncharacterized p 25.0 1.4E+02 0.0031 25.8 4.6 36 186-221 22-57 (207)
67 KOG3806 Predicted transcriptio 24.3 1E+02 0.0022 26.2 3.6 28 210-237 87-115 (177)
68 PF09702 Cas_Csa5: CRISPR-asso 24.1 3.4E+02 0.0074 21.0 6.1 65 170-237 9-87 (105)
69 COG1647 Esterase/lipase [Gener 24.0 4.7E+02 0.01 23.3 7.8 111 73-187 23-148 (243)
70 PF02811 PHP: PHP domain; Int 23.5 66 0.0014 25.8 2.4 31 11-41 7-38 (175)
71 PF11773 PulG: Type II secreto 23.1 1.5E+02 0.0033 21.9 3.9 42 182-225 34-75 (82)
72 PF07676 PD40: WD40-like Beta 23.0 39 0.00084 20.3 0.7 11 10-20 13-23 (39)
73 KOG0330 ATP-dependent RNA heli 22.8 1.8E+02 0.0038 28.2 5.2 125 67-196 99-233 (476)
74 PF11211 DUF2997: Protein of u 22.4 1.8E+02 0.0039 19.1 3.8 32 145-176 3-34 (48)
75 PF14593 PH_3: PH domain; PDB: 21.9 73 0.0016 24.6 2.2 16 140-155 36-51 (104)
76 PF01592 NifU_N: NifU-like N t 20.4 3.6E+02 0.0078 21.1 6.0 53 145-200 42-96 (126)
No 1
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.7e-69 Score=454.54 Aligned_cols=240 Identities=64% Similarity=1.003 Sum_probs=235.1
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhH
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
||||+||.++|||||+|||||||||++|+++|+++||+|+++++||++-+|..+.|+++++|||+||+|+++.++|+++|
T Consensus 1 Mfrnqyd~d~t~wsPqGrl~QvEya~EavkqGsatVGLks~thaVLvAl~r~~seLss~QkKi~~iD~h~g~siAGLt~D 80 (264)
T KOG0863|consen 1 MFRNQYDNDVTTWSPQGRLHQVEYAMEAVKQGSATVGLKSRTHAVLVALKRAQSELSSHQKKIFKIDDHIGISIAGLTAD 80 (264)
T ss_pred CCcccccCceeEECCcceehHHHHHHHHHhcccceEeecccceEEEeeeccchhHHHHhhheeEecccccceEEeccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.|++++|.+|.++++.|++++|+..|...|++++|..||++++|||||+++|+|+|+.|||||+++|+|++.++++++
T Consensus 81 arvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~s 160 (264)
T KOG0863|consen 81 ARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMS 160 (264)
T ss_pred hHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecCCCceeEEEcCCccEEEEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccC-ccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhccc
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAG 239 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d-~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~ 239 (279)
||++||.+++|||+++++|++++.||+|.+++.||+.++..| .+++.+++|+||+||.+|++++.+++.++++.++...
T Consensus 161 IGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~pf~~~d~~~~~k~~~~~~~~~ 240 (264)
T KOG0863|consen 161 IGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEPFTILDQKDVAKYVDLFKKVD 240 (264)
T ss_pred cccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCceEeecHHHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999999999866 7999999999999999999999999999999888766
Q ss_pred C
Q 023620 240 T 240 (279)
Q Consensus 240 ~ 240 (279)
+
T Consensus 241 ~ 241 (264)
T KOG0863|consen 241 E 241 (264)
T ss_pred C
Confidence 3
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3.4e-62 Score=437.61 Aligned_cols=238 Identities=37% Similarity=0.580 Sum_probs=226.0
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecc
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGL 77 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~ 77 (279)
|.. +||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+
T Consensus 1 ~~~-~yd~~~~~fsp~Grl~QvEYA~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~ 79 (253)
T PTZ00246 1 MSR-RYDSRTTTFSPEGRLYQVEYALEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGL 79 (253)
T ss_pred CCC-ccCCCCceECCCCEEhHHHHHHHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEc
Confidence 544 8999999999999999999999999999999999999999999999999876 246799999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEee
Q 023620 78 TADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEY 156 (279)
Q Consensus 78 ~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~ 156 (279)
.+|++.+.+.+|.++..|++.++.++++..+++.++..+|.|+|+++.|||+|++||||||+ .||+||++||+|++.++
T Consensus 80 ~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~ 159 (253)
T PTZ00246 80 TADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGW 159 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecc
Confidence 99999999999999999999999999999999999999999999999999999999999995 78999999999999999
Q ss_pred ceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC-----CEEEeCHHHHHHH
Q 023620 157 QAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-----PFHILDQETVQKL 231 (279)
Q Consensus 157 ~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-----~f~~l~~~ei~~~ 231 (279)
+++|+|+++++++++|+++|+ ++|+++||++++++||+.+..+++.++++++|++|+++| .|++|+++||+++
T Consensus 160 ~~~a~G~gs~~~~~~Le~~~~--~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~ 237 (253)
T PTZ00246 160 KATAIGQNNQTAQSILKQEWK--EDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAEL 237 (253)
T ss_pred eEEEECCCcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHH
Confidence 999999999999999999999 899999999999999999999999999999999999874 3999999999999
Q ss_pred HHHhhcccCC
Q 023620 232 IDSFEIAGTE 241 (279)
Q Consensus 232 l~~~~~~~~~ 241 (279)
|.++......
T Consensus 238 l~~~~~~~~~ 247 (253)
T PTZ00246 238 LKKVTQEYAK 247 (253)
T ss_pred HHHHhhhhhh
Confidence 9999766543
No 3
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.5e-62 Score=430.97 Aligned_cols=224 Identities=36% Similarity=0.632 Sum_probs=216.7
Q ss_pred CCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHHH
Q 023620 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRV 83 (279)
Q Consensus 6 yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~ 83 (279)
||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.+|++.
T Consensus 1 yd~~~t~fsp~Grl~QveyA~~av~~G~t~igik~~dgVvlaad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (227)
T cd03750 1 YSFSLTTFSPSGKLVQIEYALAAVSSGAPSVGIKAANGVVLATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRV 80 (227)
T ss_pred CCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHH
Confidence 899999999999999999999999999999999999999999999998776 467899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecC
Q 023620 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGS 163 (279)
Q Consensus 84 l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~ 163 (279)
+++++|.++..|++.+|.+++++.++++|++++|.||++++.|||+|++||+|||++||+||++||+|++.+++++|+|+
T Consensus 81 l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~ 160 (227)
T cd03750 81 LVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGK 160 (227)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECC
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHH
Q 023620 164 RSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232 (279)
Q Consensus 164 gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l 232 (279)
++++++++||++|+ ++|+++||++++++||+.+++|+ +++.+++|++|+++++|++++++||+++|
T Consensus 161 g~~~~~~~Le~~~~--~~ms~eeai~l~~~~l~~~~~~~-l~~~~iev~iv~~~~~~~~~~~~ei~~~~ 226 (227)
T cd03750 161 NYSNAKTFLEKRYN--EDLELEDAIHTAILTLKEGFEGQ-MTEKNIEIGICGETKGFRLLTPAEIKDYL 226 (227)
T ss_pred CCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCEEECCHHHHHHHh
Confidence 99999999999999 89999999999999999999876 69999999999997679999999999987
No 4
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-62 Score=409.04 Aligned_cols=232 Identities=42% Similarity=0.656 Sum_probs=220.5
Q ss_pred CC--CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEec
Q 023620 1 MF--RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAG 76 (279)
Q Consensus 1 m~--~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG 76 (279)
|| |+.||+.++||||+|||||||||++|++.|+|.|||+.++|||||++||+++.| ++...||++|++||+|++||
T Consensus 1 mfltrseydrgVNTfSpEGRlfQVEYaieAikLGsTaIGv~TkEgVvL~vEKritSpLm~p~sveKi~eid~HIgca~SG 80 (241)
T KOG0176|consen 1 MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSG 80 (241)
T ss_pred CcccHHHhcccccccCCCceeeehhhHHHHHhcCCceeeeeccceEEEEEeccccCcccCchhhhhheehhhceeeeccc
Confidence 66 899999999999999999999999999999999999999999999999999998 57889999999999999999
Q ss_pred chhHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhc-----cCCCCcceeeEEEEEeCCCcEEEEEcCCc
Q 023620 77 LTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQR-----SWKRPYGVGLLVAGLDEKGAHLYYNCPSG 151 (279)
Q Consensus 77 ~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~-----~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G 151 (279)
+.+|.+.|+++.|.+|++|++.||++++++.+.+.++++..+|-.. .-.|||||++|+||+|++||+||..||+|
T Consensus 81 l~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~~gpqL~h~dPSG 160 (241)
T KOG0176|consen 81 LIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDETGPQLYHLDPSG 160 (241)
T ss_pred cccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccCCCceEEEeCCCC
Confidence 9999999999999999999999999999999999999998777533 23589999999999999999999999999
Q ss_pred eEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHH
Q 023620 152 NYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKL 231 (279)
Q Consensus 152 ~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~ 231 (279)
+|++|++-|||+||.-+.+.|++.|+ ++|+++||+.+++..|+.+++ +.++.+|+++++|++++.|++++++|++.+
T Consensus 161 tf~~~~AKAIGSgsEga~~~L~~e~~--~~ltL~ea~~~~L~iLkqVMe-eKl~~~Nvev~~vt~e~~f~~~t~EE~~~~ 237 (241)
T KOG0176|consen 161 TFIRYKAKAIGSGSEGAESSLQEEYH--KDLTLKEAEKIVLKILKQVME-EKLNSNNVEVAVVTPEGEFHIYTPEEVEQV 237 (241)
T ss_pred ceEEecceeccccchHHHHHHHHHHh--hcccHHHHHHHHHHHHHHHHH-HhcCccceEEEEEcccCceEecCHHHHHHH
Confidence 99999999999999999999999999 899999999999999999886 678999999999999999999999999999
Q ss_pred HHHh
Q 023620 232 IDSF 235 (279)
Q Consensus 232 l~~~ 235 (279)
|.++
T Consensus 238 i~~~ 241 (241)
T KOG0176|consen 238 IKRL 241 (241)
T ss_pred HhcC
Confidence 8753
No 5
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=5.5e-60 Score=420.50 Aligned_cols=230 Identities=40% Similarity=0.638 Sum_probs=221.1
Q ss_pred CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 3 ~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
+++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.++.+ .++.+|||+|++|++|+++|+.+|
T Consensus 7 ~~~y~~~~~~fsp~Gr~~Q~eya~~av~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 86 (241)
T PRK03996 7 QMGYDRAITIFSPDGRLYQVEYAREAVKRGTTAVGVKTKDGVVLAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVAD 86 (241)
T ss_pred ccccCCCCceECCCCeEhHHHHHHHHHHhCCCEEEEEeCCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHH
Confidence 688999999999999999999999999999999999999999999999998765 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.++++++.++..|++.++.+++++.+++++++.+|.|+++++.|||+|++||||||++||+||.+||+|++.+++++|
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a 166 (241)
T PRK03996 87 ARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATA 166 (241)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeCCcCEEEEECCCCCeecceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC-CEEEeCHHHHHHHHHHh
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKLIDSF 235 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-~f~~l~~~ei~~~l~~~ 235 (279)
+|++++.++++||++|+ ++|+++||++++++||+.+.++ ..++++++|++|++++ +|+.++++||+++++++
T Consensus 167 ~G~g~~~~~~~Le~~~~--~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 167 IGAGRDTVMEFLEKNYK--EDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVETKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred ECCCcHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCCCcEEECCHHHHHHHHHHh
Confidence 99999999999999999 8999999999999999999775 6789999999999986 49999999999999875
No 6
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-60 Score=411.46 Aligned_cols=210 Identities=69% Similarity=1.105 Sum_probs=204.5
Q ss_pred CCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhHHHHHH
Q 023620 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLS 85 (279)
Q Consensus 6 yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD~~~l~ 85 (279)
||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++.++.+|||+|++|++|++||+.+|++.+.
T Consensus 1 yd~~~t~fsp~Grl~Qveya~~av~~G~t~IgIk~~dgVvlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~~D~~~l~ 80 (211)
T cd03749 1 YDTDVTTWSPQGRLFQVEYAMEAVKQGSATVGLKSKTHAVLVALKRATSELSSYQKKIFKVDDHIGIAIAGLTADARVLS 80 (211)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHhcCCCEEEEEeCCEEEEEEeccCccccCCccccEEEeCCCEEEEEEeChHhHHHHH
Confidence 89999999999999999999999999999999999999999999998888877889999999999999999999999999
Q ss_pred HHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCc
Q 023620 86 RYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRS 165 (279)
Q Consensus 86 ~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs 165 (279)
+++|.++..|+++++++++++.+++++++++|.||++++.|||+|++||+|||++||+||++||+|++.+++++|+|+++
T Consensus 81 ~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~ 160 (211)
T cd03749 81 RYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARS 160 (211)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCc-cCCCcEEEEEEe
Q 023620 166 QAAKTYLERRFENFSESTREDLIKDALMAIRETLQGET-LKSSICTVAVVG 215 (279)
Q Consensus 166 ~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~-~~~~~i~I~ii~ 215 (279)
++++++||++|+++++|+++|++++++++|+.++.+|. +++.+|+|++|+
T Consensus 161 ~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 161 QSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 99999999999977799999999999999999999887 999999999984
No 7
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-59 Score=406.90 Aligned_cols=210 Identities=40% Similarity=0.547 Sum_probs=202.4
Q ss_pred CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 3 ~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
+++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.++.+ .++.+|||+|++|++|+++|+.+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~Qveya~~a~~~G~tvIgik~kdgVvla~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (212)
T cd03751 1 GTGYDLSASTFSPDGRVFQVEYANKAVENSGTAIGIRCKDGVVLAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLAD 80 (212)
T ss_pred CCCccCCCceECCCCcchHHHHHHHHHhcCCCEEEEEeCCEEEEEEEccccccccCcchhcceeEecCcEEEEEEEChHh
Confidence 368999999999999999999999999999999999999999999999998765 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.+.+++|.++..|++.+++++|++.++++|++++|.||+++++|||+|++||+|||++||+||++||+|++.+++++|
T Consensus 81 ~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a 160 (212)
T cd03751 81 GRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCA 160 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+|+++.+++++||++|+ ++||++||+++++++|+.+++.+.....+++|+++
T Consensus 161 ~G~g~~~a~~~Lek~~~--~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 161 IGKGKQAAKTELEKLKF--SELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred ECCCCHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 99999999999999999 89999999999999999999877889999999875
No 8
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=6.9e-59 Score=409.17 Aligned_cols=220 Identities=40% Similarity=0.639 Sum_probs=211.9
Q ss_pred CCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHH
Q 023620 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGR 82 (279)
Q Consensus 5 ~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~ 82 (279)
+||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|++||+.+|++
T Consensus 2 ~~~~~~~~f~p~Grl~Qieya~~av~~G~tvigi~~~dgvvlaad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~ 81 (224)
T TIGR03633 2 GYDRAITVFSPDGRLYQVEYAREAVKRGTTAVGIKTKDGVVLAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADAR 81 (224)
T ss_pred CCCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHH
Confidence 7999999999999999999999999999999999999999999999998765 46789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEec
Q 023620 83 VLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIG 162 (279)
Q Consensus 83 ~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG 162 (279)
.+.++++.++..|++.++++++++.++++|++.+|.|++++++|||+|++||||+|+.||+||.+||+|++.+++++|+|
T Consensus 82 ~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G 161 (224)
T TIGR03633 82 VLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIG 161 (224)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999889999999999999999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC-EEEeCHHH
Q 023620 163 SRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQET 227 (279)
Q Consensus 163 ~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~-f~~l~~~e 227 (279)
+++.+++++|+++|+ ++|+++||++++++||+.+.+ |++++++++|++|+++|+ |+.++++|
T Consensus 162 ~g~~~~~~~L~~~~~--~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g~~~~~~~~~~ 224 (224)
T TIGR03633 162 AGRQAVTEFLEKEYR--EDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVEDKKFRKLSVEE 224 (224)
T ss_pred CCCHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCCCcEEECCCCC
Confidence 999999999999999 899999999999999999887 899999999999999875 99988765
No 9
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-58 Score=402.73 Aligned_cols=209 Identities=40% Similarity=0.653 Sum_probs=202.2
Q ss_pred CCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhH
Q 023620 4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 4 ~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
++||+++|+|||+|||+|||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|++||+.+|
T Consensus 1 ~~yd~~~~~fsp~Grl~Qveya~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D 80 (213)
T cd03752 1 RRYDSRTTIFSPEGRLYQVEYAMEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSD 80 (213)
T ss_pred CCcCCCCceECCCCEEhHHHhHHHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHh
Confidence 47999999999999999999999999999999999999999999999999875 347899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
++.+.+++|.++..|+++++++++++.++++|+..+|.|||+++.|||+|++||+|||+ .||+||.+||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~ 160 (213)
T cd03752 81 ANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKAT 160 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 160 AIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
|+|+++.+++++||++|+ ++|+++||++++++||+.+.+|+..++.+++|++|
T Consensus 161 a~G~gs~~~~~~Le~~y~--~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 161 AIGNNNQAAQSLLKQDYK--DDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred EECCCcHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999 89999999999999999999999999999999985
No 10
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-57 Score=402.15 Aligned_cols=230 Identities=46% Similarity=0.715 Sum_probs=220.8
Q ss_pred CCCCCcceeeCCCCCcchhchHHHHhccC-CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchh
Q 023620 4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQG-SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTA 79 (279)
Q Consensus 4 ~~yd~~~t~fsp~Grl~QvEYa~~av~~G-~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~a 79 (279)
.+||+.+++|||+|||+|+|||.+++++| +|+|||+++||||||+|+|.++++ .++.+|||+|+|||+|+++|+.+
T Consensus 1 ~~~~~~~~~fsp~g~l~q~e~a~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~a 80 (236)
T COG0638 1 AGYDRAITIFSPEGRLFQVEYALEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAA 80 (236)
T ss_pred CCCcCcceeECCCCchHHHHHHHHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcH
Confidence 37999999999999999999999999986 999999999999999999999985 46689999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceE
Q 023620 80 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 80 D~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
|++.|++++|.++..|++.++++++++.+++++++++|.|+++ .|||+|++||||+|+++|+||++||+|++.+++++
T Consensus 81 Da~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~--~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~ 158 (236)
T COG0638 81 DAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS--GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKAT 158 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC--cccceEEEEEEEEcCCCCeEEEECCCCceeecCEE
Confidence 9999999999999999999999999999999999999999987 89999999999999977999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhc
Q 023620 160 AIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
|+|+|++.++++||++|+ ++|++|||++++++||+.+.+||..++++++|++|+++++|+.++.++++.+++.+..
T Consensus 159 a~Gsgs~~a~~~Le~~y~--~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~~~~~~~~~~~~~~~~~~~ 234 (236)
T COG0638 159 AIGSGSQFAYGFLEKEYR--EDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEGFRKLDGEEIKKLLDDLSE 234 (236)
T ss_pred EEcCCcHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCCeEEcCHHHHHHHHHHHhh
Confidence 999999999999999998 8999999999999999999999998999999999999767999999999999988764
No 11
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.3e-57 Score=394.06 Aligned_cols=204 Identities=42% Similarity=0.634 Sum_probs=196.4
Q ss_pred CCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHHH
Q 023620 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRV 83 (279)
Q Consensus 6 yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~ 83 (279)
||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.+..+ .+..+|||+|++|++|++||+.+|++.
T Consensus 1 ~d~~~~~fsp~Gr~~Qveya~~av~~G~t~Igik~~dgVvlaad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (207)
T cd03755 1 YDRAITVFSPDGHLFQVEYAQEAVRKGTTAVGVRGKDCVVLGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARV 80 (207)
T ss_pred CCCCCceECCCCeEeHHHHHHHHHHcCCCEEEEEeCCEEEEEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHH
Confidence 899999999999999999999999999999999999999999999987765 356899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEec
Q 023620 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIG 162 (279)
Q Consensus 84 l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG 162 (279)
+.+++|.++..|++.++++++++.+++++++++|.|+++++.|||+|++||+|||+ +||+||++||+|++.+++++|+|
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G 160 (207)
T cd03755 81 LINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIG 160 (207)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEEC
Confidence 99999999999999999999999999999999999999999999999999999996 58999999999999999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 163 SRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 163 ~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+++++++++||++|+ ++|+++||++++++||+.+.+ .++.++||++|
T Consensus 161 ~gs~~~~~~Le~~~~--~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 161 RNSKTVREFLEKNYK--EEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred CCCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 999999999999999 899999999999999999986 78899999985
No 12
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.2e-57 Score=395.02 Aligned_cols=209 Identities=33% Similarity=0.600 Sum_probs=197.8
Q ss_pred CCCCcceeeCCCCCcchhchHHHHhcc-CCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHH
Q 023620 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADG 81 (279)
Q Consensus 5 ~yd~~~t~fsp~Grl~QvEYa~~av~~-G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~ 81 (279)
+||+++|+|||+|||+|||||+||+++ |+|+|||+++||||||+|+|.++.+ .++.+|||+|++|++|++||+.+|+
T Consensus 1 ~yd~~~~~fsp~Grl~Qveya~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~ 80 (215)
T cd03754 1 GFDRHITIFSPEGRLYQVEYAFKAVKNAGLTSVAVRGKDCAVVVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADS 80 (215)
T ss_pred CCCCCCeeECCCCeEeHHHhHHHHHhcCCccEEEEEeCCEEEEEEeccccccccCCcccCceEEEcCCEEEEEEechhhH
Confidence 599999999999999999999999986 7799999999999999999998765 4578999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEE
Q 023620 82 RVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 82 ~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
+.+.+++|.++..|+++++++++++.|++++++++|.||++++.|||+|++||||||+ +||+||++||+|++.+++++|
T Consensus 81 ~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a 160 (215)
T cd03754 81 RSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATA 160 (215)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999995 789999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 161 IGSRSQAAKTYLERRFENFSES--TREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~--s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+|+++++++++||++|+...+| +++||++++++||+.+.+|| +++++++|+||
T Consensus 161 ~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~rd-~~~~~~ei~~~ 215 (215)
T cd03754 161 AGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLSTD-FKATEIEVGVV 215 (215)
T ss_pred ECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 9999999999999999943358 99999999999999999988 55999999985
No 13
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-57 Score=392.87 Aligned_cols=208 Identities=42% Similarity=0.645 Sum_probs=200.9
Q ss_pred CCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHH
Q 023620 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGR 82 (279)
Q Consensus 5 ~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~ 82 (279)
+||+++|+|||+|||+|+|||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|++||+.+|++
T Consensus 1 ~y~~~~~~fsp~G~l~Q~eya~~av~~G~t~igik~~dgvvla~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~ 80 (211)
T cd03756 1 GYDRAITVFSPDGRLYQVEYAREAVKRGTTALGIKCKEGVVLAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADAR 80 (211)
T ss_pred CCCCCCceECCCCeEhHHHHHHHHHHcCCCEEEEEECCEEEEEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHH
Confidence 5999999999999999999999999999999999999999999999998765 46789999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEec
Q 023620 83 VLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIG 162 (279)
Q Consensus 83 ~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG 162 (279)
.+.++++.++..|+++++++++++.+++++++.+|.|+++++.|||+|++||+|||+.||+||.+||+|++.+++++|+|
T Consensus 81 ~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G 160 (211)
T cd03756 81 VLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIG 160 (211)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999989999999999999999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEe
Q 023620 163 SRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVG 215 (279)
Q Consensus 163 ~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~ 215 (279)
+++++++++||++|+ ++|+++||++++++||+.+.+++ +++++++|++|+
T Consensus 161 ~g~~~~~~~Le~~~~--~~m~~~ea~~l~~~~l~~~~~~~-~~~~~~~v~ii~ 210 (211)
T cd03756 161 SGRQAVTEFLEKEYK--EDMSLEEAIELALKALYAALEEN-ETPENVEIAYVT 210 (211)
T ss_pred CCCHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEe
Confidence 999999999999999 89999999999999999988766 499999999996
No 14
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-58 Score=383.85 Aligned_cols=234 Identities=37% Similarity=0.581 Sum_probs=221.7
Q ss_pred CCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHH
Q 023620 4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADG 81 (279)
Q Consensus 4 ~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~ 81 (279)
++||+.+|+|||||+|||||||++||++|+|+||++++|+|||+.+++...+| .+...||..+++|+.|+++|+.+|+
T Consensus 2 srydraltvFSPDGhL~QVEYAqEAvrkGstaVgvrg~~~vvlgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDA 81 (249)
T KOG0183|consen 2 SRYDRALTVFSPDGHLFQVEYAQEAVRKGSTAVGVRGNNCVVLGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADA 81 (249)
T ss_pred CccccceEEECCCCCEEeeHhHHHHHhcCceEEEeccCceEEEEEeecchhhhhhhhhhhhheeecceeeEEecCCCccc
Confidence 46999999999999999999999999999999999999999999999988887 4678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCC-cEEEEEcCCceEEeeceEE
Q 023620 82 RVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 82 ~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~a 160 (279)
+.|++++|-+|+.|+++.+.+++++.++++|+.+.|.|||.+++||||++.||+|+|.+| |+||+++|+|.|.+|++.|
T Consensus 82 rilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~a 161 (249)
T KOG0183|consen 82 RILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANA 161 (249)
T ss_pred eeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccc
Confidence 999999999999999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcccC
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAGT 240 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~ 240 (279)
+|.+|+.++.|||++|+..+-.+..+++++++++|.++.+ ..+.+++++++.+++.+++|+.++|+.++..++.+.+
T Consensus 162 iGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvq---s~~~nie~aVm~~~~~~~~l~~~~I~~~v~~ie~E~e 238 (249)
T KOG0183|consen 162 IGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQ---SGGKNIEVAVMKRRKDLKMLESEEIDDIVKEIEQEEE 238 (249)
T ss_pred cccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhh---cCCCeeEEEEEecCCceeecCHHHHHHHHHHHHHHHH
Confidence 9999999999999999853447889999999999999886 4578999999999878999999999999999987743
No 15
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-57 Score=375.47 Aligned_cols=231 Identities=35% Similarity=0.581 Sum_probs=221.3
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccc--cccccEEEEcCcEEEEEecch
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELS--SHQKKIFKVDDHIGVAIAGLT 78 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~ 78 (279)
|-..+|.+++|+|||+|||-|+|||+.||++|.+.|||+..||||||++++..+.|. ....|+++|.+||+|.+||+.
T Consensus 1 m~d~~y~fslTtFSpsGKL~QieyAL~Av~~G~~SvGi~A~nGvVlatekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmg 80 (233)
T KOG0181|consen 1 MGDFGYSFSLTTFSPSGKLVQIEYALTAVVNGQTSVGIKAANGVVLATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMG 80 (233)
T ss_pred CCCcccceeeEEEcCCCceehHHHHHHHHhCCCCceeeeecCceEEEeccCCCCccchhhhhhhHhhccCCcceEEecCC
Confidence 666799999999999999999999999999999999999999999999999998883 567999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeece
Q 023620 79 ADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQA 158 (279)
Q Consensus 79 aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~ 158 (279)
+|+|.+++..|+.+.+|...|++++|+..|+..++..+|+|||..+.|||||++++||||+.+|.||++||+|+++.|++
T Consensus 81 pD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wka 160 (233)
T KOG0181|consen 81 PDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKA 160 (233)
T ss_pred CceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCCCceeEEEECCccceeehhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHh
Q 023620 159 FAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSF 235 (279)
Q Consensus 159 ~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~ 235 (279)
+|+|.+...++++||++|+ .+|.+|+++..++..|++.++. .++.++|+|+++..+ .|++|+++||+.+|+.+
T Consensus 161 tA~Gkn~v~aktFlEkR~~--edleldd~ihtailtlkE~feg-e~~~~nieigv~~~~-~F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 161 TAMGKNYVNAKTFLEKRYN--EDLELDDAIHTAILTLKESFEG-EMTAKNIEIGVCGEN-GFRRLTPAEIEDYLASL 233 (233)
T ss_pred hhhccCcchHHHHHHHHhc--cccccchHHHHHHHHHHHHhcc-ccccCceEEEEecCC-ceeecCHHHHHHHHhcC
Confidence 9999999999999999999 7999999999999999998864 588999999999976 59999999999999764
No 16
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-56 Score=376.39 Aligned_cols=237 Identities=38% Similarity=0.592 Sum_probs=224.3
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecc
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGL 77 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~ 77 (279)
|.| .||...|+|||+|||+|||||++++.+.+|+|||.++|||||++++|.+++| +...+||++|+|||+|+++|+
T Consensus 1 msr-~ydsrttiFspEGRLyQVEyAmeais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGl 79 (249)
T KOG0178|consen 1 MSR-RYDSRTTIFSPEGRLYQVEYAMEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGL 79 (249)
T ss_pred CCc-CcCCcccccCCCcchHHHHHHHHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecc
Confidence 555 7999999999999999999999999999999999999999999999999997 456799999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEee
Q 023620 78 TADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEY 156 (279)
Q Consensus 78 ~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~ 156 (279)
++|+..|++++|..+++|.++||.++|++.|++.|+++.|.|||+.+.|||||++|.+|||. .|.+||+.||||++..|
T Consensus 80 t~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gW 159 (249)
T KOG0178|consen 80 TSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGW 159 (249)
T ss_pred cccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999997 58999999999999999
Q ss_pred ceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC---CEEEeCHHHHHHHHH
Q 023620 157 QAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE---PFHILDQETVQKLID 233 (279)
Q Consensus 157 ~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~---~f~~l~~~ei~~~l~ 233 (279)
++.|+|.++..+++.|+..|++ ..++++||+.+|++.|...++...++...+||+.++++. .++++.++||.++|.
T Consensus 160 ka~ciG~N~~Aa~s~Lkqdykd-d~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~ 238 (249)
T KOG0178|consen 160 KATCIGANSGAAQSMLKQDYKD-DENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLE 238 (249)
T ss_pred ceeeeccchHHHHHHHHhhhcc-ccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHH
Confidence 9999999999999999999984 456799999999999999999999999999999999864 478999999999999
Q ss_pred Hhhccc
Q 023620 234 SFEIAG 239 (279)
Q Consensus 234 ~~~~~~ 239 (279)
+....+
T Consensus 239 k~~~~~ 244 (249)
T KOG0178|consen 239 KYHETQ 244 (249)
T ss_pred Hhhhhh
Confidence 987544
No 17
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.4e-55 Score=383.82 Aligned_cols=206 Identities=41% Similarity=0.655 Sum_probs=196.1
Q ss_pred CCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHHH
Q 023620 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRV 83 (279)
Q Consensus 6 yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~ 83 (279)
||+++|+|||+|||+|||||++++++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.+|++.
T Consensus 1 ~~~~~~~f~p~G~~~Q~eya~~a~~~G~t~igik~~dgVvlaad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~ 80 (213)
T cd03753 1 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGIKTKEGVVLAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADART 80 (213)
T ss_pred CCCCCccCCCCCeEhHHHHHHHHHhcCCCEEEEEeCCEEEEEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHH
Confidence 899999999999999999999999999999999999999999999998765 367799999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhcc-----CCCCcceeeEEEEEeCCCcEEEEEcCCceEEeece
Q 023620 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRS-----WKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQA 158 (279)
Q Consensus 84 l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~-----~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~ 158 (279)
+.+.+|.+++.|++.++++++++.++++|++++|.|+++. ..|||+|++||||||++||+||.+||+|++.++++
T Consensus 81 l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~ 160 (213)
T cd03753 81 LIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDA 160 (213)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccE
Confidence 9999999999999999999999999999999999998753 46999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 159 FAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 159 ~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+|+|+++++++++|+++|+ ++|+++||++++++||+.+.++ .+++++++|++|
T Consensus 161 ~a~G~~~~~~~~~L~~~~~--~~ls~eeai~l~~~~l~~~~~~-~~~~~~~ei~~~ 213 (213)
T cd03753 161 KAIGSGSEGAQSSLQEKYH--KDMTLEEAEKLALSILKQVMEE-KLNSTNVELATV 213 (213)
T ss_pred EEECCCcHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEC
Confidence 9999999999999999999 8999999999999999998765 588999999985
No 18
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.7e-55 Score=382.47 Aligned_cols=206 Identities=55% Similarity=0.833 Sum_probs=199.7
Q ss_pred CCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHHH
Q 023620 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRV 83 (279)
Q Consensus 6 yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~ 83 (279)
||+++|+|||+|||+|||||++++++|+|+|||+++||||||+|+|.+.++ .++.+|||+|++|++|+++|..+|++.
T Consensus 1 ~~~~~~~f~~~G~~~q~eya~~~~~~G~tvigi~~~dgVvlaaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~ 80 (209)
T cd01911 1 YDRSITTFSPEGRLFQVEYALEAVKNGSTAVGIKGKDGVVLAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARV 80 (209)
T ss_pred CCCCCccCCCCCEEeHHHHHHHHHHcCCCEEEEEECCEEEEEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHH
Confidence 899999999999999999999999999999999999999999999998765 367899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCC-CcEEEEEcCCceEEeeceEEec
Q 023620 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIG 162 (279)
Q Consensus 84 l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiG 162 (279)
+.++++.++..|++.++++++++.+++++++++|.|+++++.|||+|++||+|||++ ||+||.+||.|++.+++++++|
T Consensus 81 l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G 160 (209)
T cd01911 81 LVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIG 160 (209)
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeC
Confidence 999999999999999999999999999999999999999999999999999999975 8999999999999999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 163 SRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 163 ~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+++.+++++|+++|+ ++|+++||++++++||+.+.+||. ++++++|+++
T Consensus 161 ~g~~~~~~~L~~~~~--~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 161 KGSQEAKTFLEKRYK--KDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred CCcHHHHHHHHHhcc--cCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 999999999999999 899999999999999999999998 9999999975
No 19
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-54 Score=365.50 Aligned_cols=231 Identities=34% Similarity=0.522 Sum_probs=212.8
Q ss_pred CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 3 ~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
.++||+..++|||+||+||+|||+|||.||+|+|||||||||||+++|..+|+| ....+|||.|++||+|+++|+.+|
T Consensus 5 GtGyDls~s~fSpdGrvfQveYA~KAven~~T~IGIk~kdGVVl~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~D 84 (254)
T KOG0184|consen 5 GTGYDLSASTFSPDGRVFQVEYAQKAVENSGTCIGIKCKDGVVLAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPD 84 (254)
T ss_pred cccccccceeeCCCCceehHHHHHHHHhcCCcEEEEecCCeEEEEEeeeecccccccCCCCceEeecccccEEEeccccc
Confidence 578999999999999999999999999999999999999999999999999998 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.+..++|.++.+|+-+|+.++|...++..++++.|.||.+++.||||++.|+++||.+||+||.++|+|.++.|+++|
T Consensus 85 g~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aa 164 (254)
T KOG0184|consen 85 GRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAA 164 (254)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeCCCceEEEEcCCCCccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecC--CCEEEeCHHHHHHHHHHhh
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAG--EPFHILDQETVQKLIDSFE 236 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~--~~f~~l~~~ei~~~l~~~~ 236 (279)
+|.+.|.|++.||+. ++..|+.+|+++.+.+.|..+.+...-....+||.|++.. |..++++. ||-+....+.
T Consensus 165 iGKgrq~aKtElEKL--~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~vp~-el~~ea~~~a 239 (254)
T KOG0184|consen 165 IGKGRQAAKTELEKL--KIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEKVPS-ELLEEAEKYA 239 (254)
T ss_pred ccchhHHHHHHHHhc--ccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCccccCcH-HHHHHHHHHH
Confidence 999999999999998 4479999999999999999887666666778999999864 44566666 5555555444
No 20
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-53 Score=357.53 Aligned_cols=234 Identities=33% Similarity=0.584 Sum_probs=221.8
Q ss_pred CCCCCcceeeCCCCCcchhchHHHHhcc-CCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 4 ~~yd~~~t~fsp~Grl~QvEYa~~av~~-G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
.+||+.+|+|||+|||||||||+||+++ |-|.||++++|++|+++.++.+.+| ++.+..+|+|+.+|+|+++|..+|
T Consensus 7 agfDrhitIFspeGrLyQVEYafkAin~~gltsVavrgkDcavvvsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aD 86 (246)
T KOG0182|consen 7 AGFDRHITIFSPEGRLYQVEYAFKAINQAGLTSVAVRGKDCAVVVTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIAD 86 (246)
T ss_pred CCccceEEEECCCceEEeeehHHHHhhcCCCceEEEcCCceEEEEecccCcccccccccceeEEEeeccceEEEecCCcc
Confidence 4699999999999999999999999999 6699999999999999999999998 567899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
.+..+.++|.++.+++|.||.+||++.|++.++++.|.|||+..+||+||.+++.|+|+ .||.||.+||.|.+..++++
T Consensus 87 ar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAt 166 (246)
T KOG0182|consen 87 ARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKAT 166 (246)
T ss_pred hHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceee
Confidence 99999999999999999999999999999999999999999999999999999999995 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC-EEEeCHHHHHHHHHHhhcc
Q 023620 160 AIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQKLIDSFEIA 238 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~-f~~l~~~ei~~~l~~~~~~ 238 (279)
+.|.....+.++||++|++..+++.+|++++++.||..++..| +..+.++|++++++.+ |++|+.+||++.|..+.+.
T Consensus 167 aaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~D-fk~se~EVgvv~~~~p~f~~Ls~~eie~hL~~IAEk 245 (246)
T KOG0182|consen 167 AAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGID-FKSSELEVGVVTVDNPEFRILSAEEIEEHLQAIAEK 245 (246)
T ss_pred ecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhcc-cCCcceEEEEEEcCCcceeeccHHHHHHHHHHhhhc
Confidence 9999999999999999996455889999999999999999876 5678999999999876 9999999999999988653
No 21
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1e-46 Score=332.20 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=186.4
Q ss_pred hchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccC-
Q 023620 22 VEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYE- 100 (279)
Q Consensus 22 vEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~- 100 (279)
-|||++|+++|+|+|||+++||||||+|++. ++.+|||+|++||+|+++|+.+|++.|+++++.++..|++.++
T Consensus 17 ~EYA~kav~~g~T~VGIk~kdgVVLaaek~~-----~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~ 91 (228)
T TIGR03691 17 AELARKGIARGRSVVVLTYADGILFVAENPS-----RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDR 91 (228)
T ss_pred HHHHHHHHHcCCcEEEEEeCCeEEEEEecCC-----CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 4999999999999999999999999999973 4679999999999999999999999999999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC--CCcEEEEEcCCceEEeec-eEEecCCcHHHHHHHHHhhc
Q 023620 101 SPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE--KGAHLYYNCPSGNYFEYQ-AFAIGSRSQAAKTYLERRFE 177 (279)
Q Consensus 101 ~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~ 177 (279)
.+++++.+++++++.+..++ +++.|||+|++||+|||+ .||+||.+||+|++.+++ ++|+|++++.++++||++|+
T Consensus 92 ~~~~v~~la~~~tq~~~~~~-~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~ 170 (228)
T TIGR03691 92 RDVTGRGLANAYAQTLGTIF-TEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYR 170 (228)
T ss_pred CCccHHHHHHHHHhhccccc-ccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcC
Confidence 68999999988777776555 467899999999999984 789999999999999976 89999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHh--ccCccCCCcEEEEEEecCC---CEEEeCHHHHHHHH
Q 023620 178 NFSESTREDLIKDALMAIRETL--QGETLKSSICTVAVVGAGE---PFHILDQETVQKLI 232 (279)
Q Consensus 178 ~~~~~s~eeai~~a~~al~~~~--~~d~~~~~~i~I~ii~k~~---~f~~l~~~ei~~~l 232 (279)
++||++||++++++||+.++ +++.+++.+++|++|++++ .|++|+++||+++|
T Consensus 171 --~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 171 --DGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred --CCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 89999999999999999996 4667999999999999754 49999999999875
No 22
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=4.5e-46 Score=331.78 Aligned_cols=204 Identities=17% Similarity=0.247 Sum_probs=190.9
Q ss_pred HhccCCeEEEEEeCCEEEEEEecCCCc-cc--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCC
Q 023620 28 AVKQGSAAIGLRSKTHVVLGCVNKANS-EL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLP 104 (279)
Q Consensus 28 av~~G~tvVgik~~dgVVlaad~r~~~-~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~ 104 (279)
.+++|+|+|||+++||||||+|+|.++ .+ .++.+|||+|++|++|+++|+.+|++.|++++|.+++.|+++++++++
T Consensus 35 ~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~is 114 (247)
T PTZ00488 35 EFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELIS 114 (247)
T ss_pred ccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Confidence 458899999999999999999999886 44 468899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCccee--eEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCC
Q 023620 105 VGRLVVQLADKAQVCTQRSWKRPYGVG--LLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 182 (279)
Q Consensus 105 ~~~la~~l~~~~q~~t~~~~~RP~gv~--~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ 182 (279)
++.++++|++++|.+ |||+++ +||||||++||+||++||+|++.+++++|+|+|+.+++++||+.|+ ++|
T Consensus 115 v~~la~~ls~~l~~~------R~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k--~dm 186 (247)
T PTZ00488 115 VAAASKILANIVWNY------KGMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFK--WDL 186 (247)
T ss_pred HHHHHHHHHHHHHhc------CCCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCc--CCC
Confidence 999999999998543 666655 7999999989999999999999999999999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcccC
Q 023620 183 TREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAGT 240 (279)
Q Consensus 183 s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~ 240 (279)
|++||++++++||+.+.+||+.++++++|++|+++| |+.|+++||+++|++++..++
T Consensus 187 s~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~~~l~~~ei~~~l~~~~~~~~ 243 (247)
T PTZ00488 187 NDEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-WKKISADDCFDLHQKYAAEKE 243 (247)
T ss_pred CHHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-cEECCHHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999999886 999999999999999886554
No 23
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.7e-45 Score=321.85 Aligned_cols=205 Identities=20% Similarity=0.249 Sum_probs=188.9
Q ss_pred cCCeEEEEEeCCEEEEEEecCCCc-cc--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHH
Q 023620 31 QGSAAIGLRSKTHVVLGCVNKANS-EL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGR 107 (279)
Q Consensus 31 ~G~tvVgik~~dgVVlaad~r~~~-~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~ 107 (279)
+|+|+|||+++||||||+|+|.++ .+ .++.+|||+|++|++|+++|+.+|++.|.+++|.+++.|+++++++++++.
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~ 80 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDG 80 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 489999999999999999999997 44 568899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCcceeeEEEEEeC--CCcEEEEEcCCc-eEEeeceEEecCCcHHHHHHHHHhhcCCCCCCH
Q 023620 108 LVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE--KGAHLYYNCPSG-NYFEYQAFAIGSRSQAAKTYLERRFENFSESTR 184 (279)
Q Consensus 108 la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~--~Gp~Ly~iDp~G-~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~ 184 (279)
++++|++++|.++ ...+|||+|++||||||+ .+|+||++||+| ++..++++|+|+|+++++++||++|+ ++||.
T Consensus 81 la~~ls~~~~~~~-~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~--~~ms~ 157 (219)
T TIGR03690 81 KANRLAAMVRGNL-PAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYS--PDLDE 157 (219)
T ss_pred HHHHHHHHHHhhh-hhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCC--CCcCH
Confidence 9999999998877 455899999999999995 579999999999 57778999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHHhccCccCCCc-------EEEEEEecCCCEEEeCHHHHHHHHHHhhccc
Q 023620 185 EDLIKDALMAIRETLQGETLKSSI-------CTVAVVGAGEPFHILDQETVQKLIDSFEIAG 239 (279)
Q Consensus 185 eeai~~a~~al~~~~~~d~~~~~~-------i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~ 239 (279)
+||++++++||+.+.+||..++.. ++|++|+++| |++|+++||+++|.++...+
T Consensus 158 eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g-~~~l~~~ei~~~~~~~~~~~ 218 (219)
T TIGR03690 158 DDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG-ARRVPESELEELARAIVESR 218 (219)
T ss_pred HHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc-eEEcCHHHHHHHHHHHHhcc
Confidence 999999999999999999866663 3999998775 99999999999999886543
No 24
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.4e-45 Score=314.92 Aligned_cols=189 Identities=21% Similarity=0.210 Sum_probs=176.2
Q ss_pred cCCeEEEEEeCCEEEEEEecCCCc-cc--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHH-hhhcccCCCCCHH
Q 023620 31 QGSAAIGLRSKTHVVLGCVNKANS-EL--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECI-NYSYTYESPLPVG 106 (279)
Q Consensus 31 ~G~tvVgik~~dgVVlaad~r~~~-~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~-~y~~~~~~~i~~~ 106 (279)
.|+|+|||+++||||||+|+|.+. .+ .++.+|||+|++|++|+++|+.+|++.+++++|.++. .|++.++.+++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 80 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPK 80 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHH
Confidence 489999999999999999999984 44 4678999999999999999999999999999999987 5668899999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHH
Q 023620 107 RLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTRE 185 (279)
Q Consensus 107 ~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~e 185 (279)
.+++++++++ |+++++.|||+|++||||||+ .||+||++||+|++.+++++|+|+++.+++++||++|+.+++||+|
T Consensus 81 ~la~~i~~~~--y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~e 158 (197)
T cd03760 81 EIHSYLTRVL--YNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEE 158 (197)
T ss_pred HHHHHHHHHH--HHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHH
Confidence 9999999985 889889999999999999996 7899999999999999999999999999999999999933399999
Q ss_pred HHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEE
Q 023620 186 DLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHI 222 (279)
Q Consensus 186 eai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~ 222 (279)
||++++++||+.+.+||..++++++|++|+++| +++
T Consensus 159 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~ 194 (197)
T cd03760 159 EARALIEECMKVLYYRDARSINKYQIAVVTKEG-VEI 194 (197)
T ss_pred HHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EEe
Confidence 999999999999999999999999999999986 654
No 25
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.7e-45 Score=313.46 Aligned_cols=186 Identities=23% Similarity=0.300 Sum_probs=176.0
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++. .++++|||+|++|++|+++|+.+|++.|++++|.++..|++.++.+++++.++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la 81 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAA 81 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 689999999999999999998653 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++++|.|+++. |||+|++||+|||+ .||+||++||+|++.+++++|+|+|+++++++||++|+ ++||++||+
T Consensus 82 ~~l~~~~~~~~~~~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~ms~eeai 157 (193)
T cd03758 82 NFTRRELAESLRSR--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYK--PDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHhhcC--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccC--CCCCHHHHH
Confidence 99999999887643 89999999999996 78999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEe
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 223 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l 223 (279)
+++++||+.+.+||+.++++++|++|+++| ++.+
T Consensus 158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~~~ 191 (193)
T cd03758 158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG-IRDL 191 (193)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCC-eEeC
Confidence 999999999999999999999999999987 6554
No 26
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-44 Score=309.63 Aligned_cols=184 Identities=18% Similarity=0.262 Sum_probs=174.5
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|++++|.++.+|++.++++++++.++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la 80 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAAS 80 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999985 3 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~ 189 (279)
+++++++|.+++ .||+|++||||||++||+||++||+|++.+++++|+|+++.+++++||++|+ ++||++||++
T Consensus 81 ~~ls~~l~~~~~----~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~eea~~ 154 (188)
T cd03761 81 KLLSNMLYQYKG----MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYR--YDLSVEEAYD 154 (188)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCC--CCCCHHHHHH
Confidence 999999987754 3899999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEecCCCEEEe
Q 023620 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 223 (279)
Q Consensus 190 ~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l 223 (279)
++++||+.+.+||+.++++++|++|+++| ++.+
T Consensus 155 l~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~~~ 187 (188)
T cd03761 155 LARRAIYHATHRDAYSGGNVNLYHVREDG-WRKI 187 (188)
T ss_pred HHHHHHHHHHHhcccCCCCeEEEEEcCCc-eEEc
Confidence 99999999999999999999999999987 5543
No 27
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.1e-44 Score=309.75 Aligned_cols=182 Identities=18% Similarity=0.230 Sum_probs=172.3
Q ss_pred cCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHH
Q 023620 31 QGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGR 107 (279)
Q Consensus 31 ~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~ 107 (279)
+|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.+|++.+++++|.++..|+++++.+++++.
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~ 81 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKT 81 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 79999999999999999999998886 346899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeec-eEEecCCcHHHHHHHHHhhcCCCCCCHH
Q 023620 108 LVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQ-AFAIGSRSQAAKTYLERRFENFSESTRE 185 (279)
Q Consensus 108 la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~~s~e 185 (279)
++++|++++ |+++ .|||+|++||||||+ .||+||++||+|++..++ ++|+|+|+++++++||++|+ ++|+++
T Consensus 82 la~~l~~~l--y~~r--~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ 155 (195)
T cd03759 82 FSSLISSLL--YEKR--FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWR--PDMEPD 155 (195)
T ss_pred HHHHHHHHH--HHhc--CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccC--CCCCHH
Confidence 999999987 5554 579999999999995 569999999999998887 99999999999999999999 899999
Q ss_pred HHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 186 DLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 186 eai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
||++++++||+.+.+||+.++++++|++|+++|
T Consensus 156 ea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g 188 (195)
T cd03759 156 ELFETISQALLSAVDRDALSGWGAVVYIITKDK 188 (195)
T ss_pred HHHHHHHHHHHHHHhhCcccCCceEEEEEcCCc
Confidence 999999999999999999999999999999987
No 28
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=2.8e-43 Score=301.04 Aligned_cols=181 Identities=31% Similarity=0.449 Sum_probs=173.1
Q ss_pred CCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHH
Q 023620 32 GSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRL 108 (279)
Q Consensus 32 G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~l 108 (279)
|+|+|||+++||||||+|+|.+.+ + .++.+|||+|++|++|+++|..+|++.+.++++.+++.|++.++.+++++.+
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 80 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKAL 80 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 789999999999999999999854 3 4678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 109 VVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 109 a~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
++++++++|.+ +.|||+|++||||||++||+||.+||+|++.+++++++|+++.+++++||++|+ ++||++||+
T Consensus 81 a~~l~~~~~~~----~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~--~~~s~~ea~ 154 (185)
T TIGR03634 81 ATLLSNILNSN----RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYR--EDMSVEEAK 154 (185)
T ss_pred HHHHHHHHHhc----CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHH
Confidence 99999998654 689999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
+++++||+.+.+|++.++.+++|++|+++|
T Consensus 155 ~l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 155 KLAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 999999999999999999999999999986
No 29
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.9e-43 Score=306.03 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=174.1
Q ss_pred hccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCH
Q 023620 29 VKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPV 105 (279)
Q Consensus 29 v~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~ 105 (279)
+++|+|+|||+++||||||+|++.++++ .++.+|||+|++|++|+++|+.+|++.+.+++|.++..|++.++.++++
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~ 84 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMST 84 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCH
Confidence 5789999999999999999999999876 4678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcC------
Q 023620 106 GRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN------ 178 (279)
Q Consensus 106 ~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~------ 178 (279)
+.+++++++++ |+++ .|||+|++||||||+ .+|+||++||+|++.+++++|+|+|+.+++++||+.|++
T Consensus 85 ~~la~~ls~~l--y~~R--~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 85 EAIAQLLSTIL--YSRR--FFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred HHHHHHHHHHH--Hhhc--CCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 99999999988 4432 469999999999996 469999999999999999999999999999999999851
Q ss_pred -CCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 179 -FSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 179 -~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
.++||++||++++++||+.+.+||+.++++++|++|+++|
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g 201 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG 201 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC
Confidence 2789999999999999999999999999999999999987
No 30
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.6e-43 Score=298.85 Aligned_cols=185 Identities=30% Similarity=0.442 Sum_probs=175.7
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++++++|+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALA 80 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999974 3 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~ 189 (279)
+++++.+|.+ +.|||+|++||||||++||+||.+||+|++.+++++|+|+++++++++|++.|+ ++|+++||++
T Consensus 81 ~~i~~~~~~~----~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~~~~ea~~ 154 (188)
T cd03764 81 TLLSNILNSS----KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYK--EDMTVEEAKK 154 (188)
T ss_pred HHHHHHHHhc----CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCC--CCCCHHHHHH
Confidence 9999998654 578999999999999988999999999999999999999999999999999998 8999999999
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeC
Q 023620 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHILD 224 (279)
Q Consensus 190 ~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~ 224 (279)
++++||+.+.+||+.++++++|++|+++| |++|+
T Consensus 155 l~~~~l~~~~~rd~~~~~~i~i~iv~~~g-~~~~~ 188 (188)
T cd03764 155 LAIRAIKSAIERDSASGDGIDVVVITKDG-YKELE 188 (188)
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEECCCC-eEeCC
Confidence 99999999999999999999999999987 88764
No 31
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=297.54 Aligned_cols=184 Identities=23% Similarity=0.256 Sum_probs=173.2
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+|+||||||+|+|.+++. .++.+|||+|++|++|+++|+.+|++.+.+++|.+++.|+++++++++++.++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTAL 80 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999863 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~ 189 (279)
++|++.+|.| ..||+|++||||||++||+||.+||+|++.+++++|+|+++.+++++|+++|+ ++||++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~--~~ls~~ea~~ 153 (189)
T cd03763 81 TMLKQHLFRY-----QGHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYK--PDMTEEEAKK 153 (189)
T ss_pred HHHHHHHHHc-----CCccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcC--CCCCHHHHHH
Confidence 9999988755 23999999999999889999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeC
Q 023620 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHILD 224 (279)
Q Consensus 190 ~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~ 224 (279)
++++||+.+.+||+.++++++|++|+++| +++..
T Consensus 154 l~~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~~~~ 187 (189)
T cd03763 154 LVCEAIEAGIFNDLGSGSNVDLCVITKDG-VEYLR 187 (189)
T ss_pred HHHHHHHHHHHhcCcCCCceEEEEEcCCc-EEEec
Confidence 99999999999999999999999999987 65543
No 32
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.8e-42 Score=304.79 Aligned_cols=182 Identities=16% Similarity=0.217 Sum_probs=168.7
Q ss_pred eEEEEEeCCEEEEEEecCCCccc--ccccccEEEEc----CcEEEEEecchhHHHHHHHHHHHHHHhhhcccCC-CCCHH
Q 023620 34 AAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVD----DHIGVAIAGLTADGRVLSRYMRSECINYSYTYES-PLPVG 106 (279)
Q Consensus 34 tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~----~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~-~i~~~ 106 (279)
-+|||+++||||||+|+|.++++ .++.+|||+|+ +||+|++||+.+|++.|++++|.+++.|++++|. ++|++
T Consensus 2 ~~vGIk~kdGVVLaadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~ 81 (236)
T cd03765 2 YCLGIKLDAGLVFASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMF 81 (236)
T ss_pred eEEEEEeCCeEEEEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHH
Confidence 48999999999999999998886 35789999998 9999999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHH-hhhccC-----CCCcceeeEEEEEe-CCCcEEEEEcCCceEEee----ceEEecCCcHHHHHHHHHh
Q 023620 107 RLVVQLADKAQV-CTQRSW-----KRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEY----QAFAIGSRSQAAKTYLERR 175 (279)
Q Consensus 107 ~la~~l~~~~q~-~t~~~~-----~RP~gv~~lvaG~D-~~Gp~Ly~iDp~G~~~~~----~~~aiG~gs~~a~~~Le~~ 175 (279)
.+++++++++++ ++|+.+ .|||+|++|||||| +.||+||++||+|++.++ +++|+|. +++++++||++
T Consensus 82 ~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~ 160 (236)
T cd03765 82 DAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRV 160 (236)
T ss_pred HHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHh
Confidence 999999998544 555554 48999999999999 578999999999999999 4589996 79999999999
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 176 FENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 176 ~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
|+ ++||++||++++++||..++.||..++.+|+|++|+++|
T Consensus 161 yk--~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G 201 (236)
T cd03765 161 IT--PDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS 201 (236)
T ss_pred cC--CCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC
Confidence 99 899999999999999999999999999999999999986
No 33
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=9e-42 Score=291.86 Aligned_cols=184 Identities=39% Similarity=0.595 Sum_probs=175.7
Q ss_pred hccCCeEEEEEeCCEEEEEEecCCCc--cc-ccc-cccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCC
Q 023620 29 VKQGSAAIGLRSKTHVVLGCVNKANS--EL-SSH-QKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLP 104 (279)
Q Consensus 29 v~~G~tvVgik~~dgVVlaad~r~~~--~l-~~~-~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~ 104 (279)
|++|+|+|||+++||||||+|+|.+. .+ .++ .+|||+|++|++++++|+.+|++.+.++++.++..|++.++.+++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~ 80 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPIS 80 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTC
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCcccc
Confidence 57999999999999999999999984 34 344 699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCC-cEEEEEcCCceEEee-ceEEecCCcHHHHHHHHHhhcCCCCC
Q 023620 105 VGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEY-QAFAIGSRSQAAKTYLERRFENFSES 182 (279)
Q Consensus 105 ~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~-~~~aiG~gs~~a~~~Le~~~~~~~~~ 182 (279)
++.+++.+++++|.++++.++|||++++||||||+++ |+||.+||+|++.++ .++|+|+|+++++++|+++|+ ++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~--~~~ 158 (190)
T PF00227_consen 81 PEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYK--PDL 158 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHT--TTS
T ss_pred chhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhcc--CCC
Confidence 9999999999999999999999999999999999766 999999999999999 699999999999999999998 899
Q ss_pred CHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 183 TREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 183 s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+++||++++++||+.+.++|..++++++|++|
T Consensus 159 ~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 159 SLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp SHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 99999999999999999999999999999987
No 34
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-41 Score=291.67 Aligned_cols=179 Identities=20% Similarity=0.236 Sum_probs=170.4
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++.++.+++++.++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a 80 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAA 80 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHH
Confidence 58999999999999999999985 3 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++++|.+ +|||+|++||||+|+ +||+||++||+|++.++++.++|+++.+++++|++.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~-----~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~--~~~s~~ea~ 153 (188)
T cd03762 81 SLFKNLCYNY-----KEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYK--PGMTLEECI 153 (188)
T ss_pred HHHHHHHHhc-----cccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCC--CCCCHHHHH
Confidence 9999998655 479999999999995 78999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
+++++||+.+.+||+.++++++|++|+++|
T Consensus 154 ~l~~~al~~~~~rd~~~~~~~~i~~i~~~g 183 (188)
T cd03762 154 KFVKNALSLAMSRDGSSGGVIRLVIITKDG 183 (188)
T ss_pred HHHHHHHHHHHHhccccCCCEEEEEECCCC
Confidence 999999999999999999999999999987
No 35
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.8e-41 Score=288.42 Aligned_cols=183 Identities=28% Similarity=0.377 Sum_probs=173.7
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.++++ .++.+|||+|+++++|+++|+.+|++.+.++++.++..|++.++++++++.++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAA 80 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999875 56889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++.++.+++ |||++++||||+|+ ++|+||.+||+|++.+++++|+|+++++++++|++.|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~~~----~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~--~~~s~~ea~ 154 (189)
T cd01912 81 NLLSNILYSYRG----FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYK--PDMTLEEAV 154 (189)
T ss_pred HHHHHHHHhcCC----CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccC--CCCCHHHHH
Confidence 999999876654 89999999999997 78999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCCCEEE
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGEPFHI 222 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~ 222 (279)
+++++||+.+.++|+.++++++|++|+++| ++.
T Consensus 155 ~~~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~~ 187 (189)
T cd01912 155 ELVKKAIDSAIERDLSSGGGVDVAVITKDG-VEE 187 (189)
T ss_pred HHHHHHHHHHHHhcCccCCcEEEEEECCCC-EEE
Confidence 999999999999999999999999999987 543
No 36
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4.3e-40 Score=279.65 Aligned_cols=178 Identities=43% Similarity=0.623 Sum_probs=170.8
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|++.++++ .++.+|||+|+++++|+++|..+|++.+.++++.++..|++.++.+++++.++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 80 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALA 80 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 589999999999999999999875 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++++|.+++. .|||++++||||+|+ .||+||.+||+|++.+++++|+|+++.+++++|+++|+ ++||++||+
T Consensus 81 ~~l~~~~~~~~~~--~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~--~~~s~~ea~ 156 (182)
T cd01906 81 KLLANLLYEYTQS--LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYK--PDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHhCCC--ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHcc--CCCCHHHHH
Confidence 9999999999876 899999999999997 78999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+++++||+.+.++|..++.+++|++|
T Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999999999999985
No 37
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=243.37 Aligned_cols=185 Identities=21% Similarity=0.298 Sum_probs=172.0
Q ss_pred HhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCC
Q 023620 28 AVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLP 104 (279)
Q Consensus 28 av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~ 104 (279)
-..||+|+|||++.|++|||+|+|.++++ ++++.|||+++|+++++.+|..+|+..|...++...+.|++.++..|+
T Consensus 25 Y~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms 104 (235)
T KOG0179|consen 25 YEDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMS 104 (235)
T ss_pred cccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhccccccc
Confidence 45899999999999999999999999764 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCC--CcceeeEEEEEeCCC-cEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcC---
Q 023620 105 VGRLVVQLADKAQVCTQRSWKR--PYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN--- 178 (279)
Q Consensus 105 ~~~la~~l~~~~q~~t~~~~~R--P~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~--- 178 (279)
+...|++|+..+ +++| ||.+..+++|+|+.| +.+|.+||.|++.+..+.|.|+++.+++++|+.....
T Consensus 105 ~~s~A~lls~~L------Y~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~ 178 (235)
T KOG0179|consen 105 IHSAAQLLSTIL------YSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQ 178 (235)
T ss_pred HHHHHHHHHHHH------hhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCc
Confidence 999999999988 3344 999999999999866 8999999999999999999999999999999975432
Q ss_pred ------CCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 179 ------FSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 179 ------~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
...+++|+|+.++.++|..+.+||..++++++|+|++++|
T Consensus 179 ~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g 224 (235)
T KOG0179|consen 179 NLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG 224 (235)
T ss_pred ccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC
Confidence 1457999999999999999999999999999999999987
No 38
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-35 Score=251.07 Aligned_cols=208 Identities=19% Similarity=0.263 Sum_probs=194.7
Q ss_pred hccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCH
Q 023620 29 VKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPV 105 (279)
Q Consensus 29 v~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~ 105 (279)
..+|+|++|++++.|||+|+|+|.+++- +...+||.+||++++-+++|-.+||+.+-+.|.++|.+|++++++.|+|
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSV 147 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISV 147 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceeh
Confidence 4789999999999999999999999863 5688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHH
Q 023620 106 GRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTRE 185 (279)
Q Consensus 106 ~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~e 185 (279)
...++.|++++.+| .++ -+.++.+|||||+.||.||++|..|+-..-+-+++||||.+|..+|++.|+ ++|+.+
T Consensus 148 saASKllsN~~y~Y---kGm-GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr--~dls~e 221 (285)
T KOG0175|consen 148 SAASKLLSNMVYQY---KGM-GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYR--YDLSDE 221 (285)
T ss_pred HHHHHHHHHHHhhc---cCc-chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCC--CCCCHH
Confidence 99999999998555 333 478899999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcccCCCC
Q 023620 186 DLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAGTEEG 243 (279)
Q Consensus 186 eai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~~~~ 243 (279)
||.+++++||..+..||..+|.-+.++.|+++| |.+++..++.+++.++.+..+.++
T Consensus 222 EA~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~~v~~~Dv~~L~~~~~e~~~~~~ 278 (285)
T KOG0175|consen 222 EAYDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WVKVSNTDVSELHYHYYEVAPPEA 278 (285)
T ss_pred HHHHHHHHHHHHHHhcccccCceEEEEEECCcc-ceecCCccHHHHHHHHHHhcCccc
Confidence 999999999999999999999999999999997 999999999999999887766554
No 39
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=239.41 Aligned_cols=187 Identities=21% Similarity=0.269 Sum_probs=175.3
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
.+++||++.|+|++|+|+...++. .++++|+++|++|+.|+++|..+|+-++.+++.+.++.|++++|.++|++..+
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aa 81 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAA 81 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHH
Confidence 478999999999999999987653 68899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++.+..+. .+++||.|++||||+|. .||.||++|..|+..+.++.+.|.++.++.++|+++|+ |+||.+||+
T Consensus 82 hFtR~~La~~L--Rsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~--pdmt~eea~ 157 (200)
T KOG0177|consen 82 HFTRRELAESL--RSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYK--PDMTIEEAL 157 (200)
T ss_pred HHHHHHHHHHH--hcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhC--CCCCHHHHH
Confidence 99999998775 34779999999999996 67999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeC
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGEPFHILD 224 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~ 224 (279)
++..+|+.+..+|-..+-.++.|.||+|+| .+.++
T Consensus 158 ~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~~~ 192 (200)
T KOG0177|consen 158 DLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRKLD 192 (200)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEcCCC-ceecc
Confidence 999999999999999999999999999997 65544
No 40
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-33 Score=240.04 Aligned_cols=186 Identities=25% Similarity=0.274 Sum_probs=173.8
Q ss_pred HHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCC
Q 023620 26 MEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESP 102 (279)
Q Consensus 26 ~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~ 102 (279)
.++.+.|+|+||+.++||||+++|+|.+.+. ..+-.||+.|.++|+||.+|..+|..++.+.+..+...|+++.++.
T Consensus 31 p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~ 110 (271)
T KOG0173|consen 31 PKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRK 110 (271)
T ss_pred CcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCC
Confidence 4566889999999999999999999999774 3577999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCC
Q 023620 103 LPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSES 182 (279)
Q Consensus 103 i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ 182 (279)
++|-...+++.+.+.+| .+ -.+..+||+|+|..|||||.+.|.|+.....|.++|||+..|+++||.+|+ ++|
T Consensus 111 ~rVv~A~~mlkQ~LFrY---qG--~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k--~dl 183 (271)
T KOG0173|consen 111 PRVVTALRMLKQHLFRY---QG--HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWK--PDL 183 (271)
T ss_pred CceeeHHHHHHHHHHHh---cC--cccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcC--ccc
Confidence 99999999999888655 23 379999999999999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 183 TREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 183 s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
++|||++++.+|+...+.+|..+|+|+++|+|++.+
T Consensus 184 t~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 184 TKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred CHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 999999999999999999999999999999999754
No 41
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-33 Score=238.92 Aligned_cols=220 Identities=23% Similarity=0.245 Sum_probs=194.1
Q ss_pred cceeeCCCCCcchhchH--------HHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecc
Q 023620 9 DVTTWSPAGRLFQVEYA--------MEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGL 77 (279)
Q Consensus 9 ~~t~fsp~Grl~QvEYa--------~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~ 77 (279)
..++|.|.|.+ ++-| +....+|++|||+|++||||||+|+..+.+ | .++++|||+|+||+++|+||.
T Consensus 12 a~~~f~~~~~~--m~~a~~~~~qrt~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGd 89 (256)
T KOG0185|consen 12 APGTFYPSGSL--MENAGDYPIQRTLNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGD 89 (256)
T ss_pred CCCcCcCccch--hhhccCCCcccccCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCcc
Confidence 35678888653 3433 234467999999999999999999999976 4 478899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhh-cccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCC-cEEEEEcCCceEEe
Q 023620 78 TADGRVLSRYMRSECINYS-YTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFE 155 (279)
Q Consensus 78 ~aD~~~l~~~lr~~~~~y~-~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~ 155 (279)
.+|+|.|.+.|.....+.. +..|..+.++.++++|.+.+ |..|+.+.|++..++|||+|++| |+|.++|..|..++
T Consensus 90 isD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvl--Y~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~ 167 (256)
T KOG0185|consen 90 ISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVL--YARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYE 167 (256)
T ss_pred HHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHH--HHhhhccCchhhheeEeeecCCCCeeEEEEeecccccc
Confidence 9999999999987777754 66678999999999999999 88889999999999999999854 99999999999999
Q ss_pred eceEEecCCcHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHH
Q 023620 156 YQAFAIGSRSQAAKTYLERRFE-NFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLID 233 (279)
Q Consensus 156 ~~~~aiG~gs~~a~~~Le~~~~-~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~ 233 (279)
.+.+|+|.|..+|+++|++.|+ +.++++.+||..++.+||+..+.||+.+.++++|++|+++| +++-.+.+|+..++
T Consensus 168 ~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i~~p~qv~~~W~ 245 (256)
T KOG0185|consen 168 SPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTISKPYQVKTNWD 245 (256)
T ss_pred CchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEecCceeeeecch
Confidence 9999999999999999999998 46889999999999999999999999999999999999976 77777777665443
No 42
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.2e-33 Score=230.26 Aligned_cols=197 Identities=16% Similarity=0.235 Sum_probs=179.4
Q ss_pred HhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCC
Q 023620 28 AVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLP 104 (279)
Q Consensus 28 av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~ 104 (279)
-+..|+|++|+++++||||++|+|++.+. ++-.+|+.+|.|+|+||.||..+|.|.+.+.++..+..|...++.+.+
T Consensus 15 evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~ 94 (224)
T KOG0174|consen 15 EVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPL 94 (224)
T ss_pred ccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCch
Confidence 57899999999999999999999999874 567799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCC
Q 023620 105 VGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSEST 183 (279)
Q Consensus 105 ~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s 183 (279)
+...++.++++..+| +.-+..++||||||+ .|.++|.+-.-|+..+-.+..-|+||.+++.|++.+|+ ++|+
T Consensus 95 v~~aA~l~r~~~Y~~-----re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r--~nMt 167 (224)
T KOG0174|consen 95 VHTAASLFREICYNY-----REMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWR--PNMT 167 (224)
T ss_pred HHHHHHHHHHHHHhC-----HHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcC--CCCC
Confidence 999999999887433 224889999999996 68999999888888888998899999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC-CEEEeCHHHHHHH
Q 023620 184 REDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKL 231 (279)
Q Consensus 184 ~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-~f~~l~~~ei~~~ 231 (279)
+||++.++.+|+..++.||-.++..|.+.+|+++| .++++.++++.++
T Consensus 168 ~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~Gver~~~~~d~~~~~ 216 (224)
T KOG0174|consen 168 LEECVRFVKNAVSLAIERDGSSGGVIRLVIINKAGVERRFFPGDKLGQF 216 (224)
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCCceEEEecCCccccc
Confidence 99999999999999999999999999999999998 3557777776544
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.97 E-value=3.7e-30 Score=217.34 Aligned_cols=165 Identities=18% Similarity=0.156 Sum_probs=142.0
Q ss_pred CCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEE-cCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHH
Q 023620 32 GSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKV-DDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGR 107 (279)
Q Consensus 32 G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~ 107 (279)
|+|+|||+++||||||+|+|.+.+. +++.+||++| ++|++|+++|..+|++.|.++++.+++.|+... ++.
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~~~-----~~~ 75 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQGNL-----LRA 75 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccCcc-----HHH
Confidence 6899999999999999999999763 6788999999 999999999999999999999999999998322 455
Q ss_pred HHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEee--ceEEecCCcHHHHHHHHHhhcCCCCCCHH
Q 023620 108 LVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEY--QAFAIGSRSQAAKTYLERRFENFSESTRE 185 (279)
Q Consensus 108 la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~--~~~aiG~gs~~a~~~Le~~~~~~~~~s~e 185 (279)
.++.+..+. .+...+|+.+++||+ |. |+||.+||.|+..+. ++.++|||+.+++++|+++|+. ++|
T Consensus 76 ~a~l~~~l~----~~~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~-~~m--- 143 (172)
T PRK05456 76 AVELAKDWR----TDRYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLEN-TDL--- 143 (172)
T ss_pred HHHHHHHHH----hccCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhc-CCC---
Confidence 555443321 123346888999994 33 799999999999776 7999999999999999999984 688
Q ss_pred HHHHHHHHHHHHHhccCccCCCcEEEEE
Q 023620 186 DLIKDALMAIRETLQGETLKSSICTVAV 213 (279)
Q Consensus 186 eai~~a~~al~~~~~~d~~~~~~i~I~i 213 (279)
||++++++|++.+.+||..++++|+|-.
T Consensus 144 eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999999999999998865
No 44
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.7e-30 Score=210.50 Aligned_cols=183 Identities=17% Similarity=0.210 Sum_probs=170.1
Q ss_pred ccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHH
Q 023620 30 KQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVG 106 (279)
Q Consensus 30 ~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~ 106 (279)
-+|+++||++++++|.||+|.|..... +.+.+|||+|+|++++|.+|+..|.+.+.++++...+.|+++.+++|-++
T Consensus 6 ynGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~ 85 (204)
T KOG0180|consen 6 YNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPE 85 (204)
T ss_pred ecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcH
Confidence 589999999999999999999987542 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCC-CcEEEEEcCCceEEe-eceEEecCCcHHHHHHHHHhhcCCCCCCH
Q 023620 107 RLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFE-YQAFAIGSRSQAAKTYLERRFENFSESTR 184 (279)
Q Consensus 107 ~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~-~~~~aiG~gs~~a~~~Le~~~~~~~~~s~ 184 (279)
.++++++.++ |.. +.-||.+.-+|||+|++ .|+|...|..|.... .++++.|.++......+|..|+ |||..
T Consensus 86 ~~s~mvS~~l--Yek--RfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~--pnmep 159 (204)
T KOG0180|consen 86 TFSSMVSSLL--YEK--RFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYE--PNMEP 159 (204)
T ss_pred HHHHHHHHHH--HHh--hcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcC--CCCCH
Confidence 9999999998 321 23399999999999874 599999999999865 4899999999999999999999 99999
Q ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 185 EDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 185 eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
|++.+.+.+||-.+.+||+++|+...+.||+|+.
T Consensus 160 d~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk 193 (204)
T KOG0180|consen 160 DELFETISQALLNAVDRDALSGWGAVVYIITKDK 193 (204)
T ss_pred HHHHHHHHHHHHhHhhhhhhccCCeEEEEEccch
Confidence 9999999999999999999999999999999985
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.97 E-value=1.5e-29 Score=212.58 Aligned_cols=162 Identities=17% Similarity=0.098 Sum_probs=138.4
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcC-cEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDD-HIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRL 108 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~-~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~l 108 (279)
+|+|||+++||||||+|+|.+.+. +++.+||++|++ |++|+++|..+|++.|.++++.+++.|+++.++ .+
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~a 75 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HH
Confidence 589999999999999999999763 678899999999 999999999999999999999999999988763 34
Q ss_pred HHHHHHHHHHhhhccCCCCcc-eeeEEEEEeCCCcEEEEEcCCceEEeec--eEEecCCcHHHHHHHHHhhcCCCC-CCH
Q 023620 109 VVQLADKAQVCTQRSWKRPYG-VGLLVAGLDEKGAHLYYNCPSGNYFEYQ--AFAIGSRSQAAKTYLERRFENFSE-STR 184 (279)
Q Consensus 109 a~~l~~~~q~~t~~~~~RP~g-v~~lvaG~D~~Gp~Ly~iDp~G~~~~~~--~~aiG~gs~~a~~~Le~~~~~~~~-~s~ 184 (279)
++.+..++ .+..+|+. +.+|++++| +||.+||.|++.+.+ +.++||||.+|+.+||.+|+ ++ |+
T Consensus 76 a~l~~~l~-----~~~~~~~l~a~~iv~~~~----~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk--~~~ms- 143 (171)
T cd01913 76 VELAKDWR-----TDRYLRRLEAMLIVADKE----HTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLD--HTDLS- 143 (171)
T ss_pred HHHHHHHH-----hccCcCceEEEEEEeCCC----cEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhc--cCCCC-
Confidence 44433321 12345555 777776554 999999999999985 99999999999999999999 74 99
Q ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEE
Q 023620 185 EDLIKDALMAIRETLQGETLKSSICTVAV 213 (279)
Q Consensus 185 eeai~~a~~al~~~~~~d~~~~~~i~I~i 213 (279)
+.++|.+|++.+.+||..++++|+|-.
T Consensus 144 --~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 --AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred --HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 569999999999999999999998754
No 46
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=7.7e-29 Score=204.14 Aligned_cols=159 Identities=42% Similarity=0.576 Sum_probs=151.8
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|++.+.++ ..+..|+++++++++++++|..+|++.+.++++.++..|++.++.++++..++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALA 80 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 579999999999999999998775 35789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEee-ceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEY-QAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~-~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+.+++.++.+++ .||+++++||||+|+++|+||.+||+|++.++ .++++|+++..++++|++.|+ ++++.+|++
T Consensus 81 ~~~~~~~~~~~~---~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~--~~~~~~~~~ 155 (164)
T cd01901 81 KELAKLLQVYTQ---GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYK--PDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHhcC---CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhc--CCCCHHHHH
Confidence 999999998877 79999999999999988999999999999999 999999999999999999998 799999999
Q ss_pred HHHHHHHH
Q 023620 189 KDALMAIR 196 (279)
Q Consensus 189 ~~a~~al~ 196 (279)
+++.+||+
T Consensus 156 ~~~~~~l~ 163 (164)
T cd01901 156 ELALKALK 163 (164)
T ss_pred HHHHHHHh
Confidence 99999985
No 47
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.97 E-value=9.1e-29 Score=207.79 Aligned_cols=164 Identities=17% Similarity=0.135 Sum_probs=138.0
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEE-cCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKV-DDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRL 108 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~l 108 (279)
+|+|||+++||||||+|+|.+.+. +++.+||++| ++|++|+++|..+|++.|.++++.+++.|++.. .+.+
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~ 75 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAA 75 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHH
Confidence 589999999999999999998763 6888999999 599999999999999999999999999998743 3555
Q ss_pred HHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEee--ceEEecCCcHHHHHHHHHhhcCCCCCCHHH
Q 023620 109 VVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEY--QAFAIGSRSQAAKTYLERRFENFSESTRED 186 (279)
Q Consensus 109 a~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~--~~~aiG~gs~~a~~~Le~~~~~~~~~s~ee 186 (279)
++.+..+ ..+..++.+.+.+|++|+| +||.+||.|.+.+. ++.++||||.+++.+||.+|++ ++|+
T Consensus 76 a~l~~~~----~~~~~~~~l~a~~iv~~~~----~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~-~~~s--- 143 (171)
T TIGR03692 76 VELAKDW----RTDRYLRRLEAMLIVADKE----TSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRN-TDLS--- 143 (171)
T ss_pred HHHHHHH----hhcccccccEEEEEEEcCC----CEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhc-CCCC---
Confidence 5554442 1112222344777776554 99999999999996 5999999999999999999953 6777
Q ss_pred HHHHHHHHHHHHhccCccCCCcEEEEE
Q 023620 187 LIKDALMAIRETLQGETLKSSICTVAV 213 (279)
Q Consensus 187 ai~~a~~al~~~~~~d~~~~~~i~I~i 213 (279)
|++++.+|++.+.+||..++++|+|-.
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999999999999998864
No 48
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=99.56 E-value=9.5e-16 Score=85.29 Aligned_cols=23 Identities=74% Similarity=1.217 Sum_probs=22.4
Q ss_pred CCCcceeeCCCCCcchhchHHHH
Q 023620 6 YDTDVTTWSPAGRLFQVEYAMEA 28 (279)
Q Consensus 6 yd~~~t~fsp~Grl~QvEYa~~a 28 (279)
||+++|+|||+|||||||||+||
T Consensus 1 YD~~~t~FSp~Grl~QVEYA~~A 23 (23)
T PF10584_consen 1 YDRSITTFSPDGRLFQVEYAMKA 23 (23)
T ss_dssp TSSSTTSBBTTSSBHHHHHHHHH
T ss_pred CCCCceeECCCCeEEeeEeeecC
Confidence 89999999999999999999997
No 49
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.3e-11 Score=99.43 Aligned_cols=168 Identities=19% Similarity=0.189 Sum_probs=126.5
Q ss_pred cCCeEEEEEeCCEEEEEEecCCCcc---cccccccEEEE-cCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHH
Q 023620 31 QGSAAIGLRSKTHVVLGCVNKANSE---LSSHQKKIFKV-DDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVG 106 (279)
Q Consensus 31 ~G~tvVgik~~dgVVlaad~r~~~~---l~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~ 106 (279)
+++|+|+++-++-|+|+.|...+.+ +..+.+|+-+| +.+++.+++|.++|+..|.+.+..+++.|.-
T Consensus 3 h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~g--------- 73 (178)
T COG5405 3 HMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQG--------- 73 (178)
T ss_pred eeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHccC---------
Confidence 5899999999999999999999865 34454444444 5589999999999999999999999998751
Q ss_pred HHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEee--ceEEecCCcHHHHHHHHHhhcCCCCCCH
Q 023620 107 RLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEY--QAFAIGSRSQAAKTYLERRFENFSESTR 184 (279)
Q Consensus 107 ~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~--~~~aiG~gs~~a~~~Le~~~~~~~~~s~ 184 (279)
.|.+..-++.+.+.....+|-+..-+||+ |+ -++|-+...|...+. ..++||||..+|++.-...++. ++++
T Consensus 74 ~L~raavelaKdwr~Dk~lr~LEAmllVa--d~--~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~-~~ls- 147 (178)
T COG5405 74 DLFRAAVELAKDWRTDKYLRKLEAMLLVA--DK--THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMEN-TELS- 147 (178)
T ss_pred cHHHHHHHHHHhhhhhhHHHHHhhheeEe--CC--CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhc-cCCC-
Confidence 13344444444443333345677777775 43 368888899998764 5899999999999998888764 5777
Q ss_pred HHHHHHHHHHHHHHhccCccCCCcEEEEEEe
Q 023620 185 EDLIKDALMAIRETLQGETLKSSICTVAVVG 215 (279)
Q Consensus 185 eeai~~a~~al~~~~~~d~~~~~~i~I~ii~ 215 (279)
|-+++.++|..+.+-+..++.+|.|-.+.
T Consensus 148 --A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 --AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred --HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 55667788888877667777777776654
No 50
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.9e-09 Score=91.41 Aligned_cols=183 Identities=19% Similarity=0.228 Sum_probs=140.0
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc--ccccccEEEE---cCc-EEEEEecchhHHHHHHHHHHHHHHhhhccc-CCCCCH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKV---DDH-IGVAIAGLTADGRVLSRYMRSECINYSYTY-ESPLPV 105 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I---~~~-i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~-~~~i~~ 105 (279)
+-|||++...|.|+++|+|.+.+. .+..+|+|-. +++ ++++.+|..+=.|.+++.+....+..+-.. -.-.++
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm 81 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSM 81 (255)
T ss_pred ceEEEEEeccceEEecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhH
Confidence 458999999999999999999886 4667888755 334 567889999999999998877665221111 112345
Q ss_pred HHHHHHHHHHHHHhhhccC------CCCcceeeEEEEEeCCC-cEEEEEcCCceEEe----eceEEecCCcHHHHHHHHH
Q 023620 106 GRLVVQLADKAQVCTQRSW------KRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFE----YQAFAIGSRSQAAKTYLER 174 (279)
Q Consensus 106 ~~la~~l~~~~q~~t~~~~------~RP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~----~~~~aiG~gs~~a~~~Le~ 174 (279)
-..+..++....+-.-+.+ .--|.|++|++|.=..+ |.||.|-|.|++.+ ..+.-+|.. .+-+++|++
T Consensus 82 ~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR 160 (255)
T COG3484 82 YEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILDR 160 (255)
T ss_pred HHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhhhh
Confidence 5566666665544322211 12589999999987655 79999999999986 478889964 356899999
Q ss_pred hhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 175 RFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 175 ~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
.++ -++.++|+.+.++-.+...++.....|-.+++-++.+|.
T Consensus 161 ~i~--~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 161 TIT--YDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhh--ccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 998 799999999999999999998888888899999998873
No 51
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=96.00 E-value=0.87 Score=39.01 Aligned_cols=154 Identities=16% Similarity=0.117 Sum_probs=91.1
Q ss_pred CeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQL 112 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l 112 (279)
+.+||..+++|+|||.|+|. +++-|.-.....|-+.| | .|.--+=+.|.+..
T Consensus 2 SLII~y~GknGaViaGDkR~-------------------I~F~G~~~~re~LEeeL------Y---sG~IktdeEL~kkA 53 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN-------------------IAFRGDEEKREKLEEEL------Y---SGKIKTDEELLKKA 53 (194)
T ss_pred eEEEEEecCCCcEEecccee-------------------eeecCCHHHHHHHHHHH------h---CCccCCHHHHHHHH
Confidence 56899999999999999983 46677766555554433 1 23333444555554
Q ss_pred HHHHHHhhh---ccCCCCcceeeEEEEEeC------CCcEEEEEcCCceEEe-----eceEEecCCc-----------HH
Q 023620 113 ADKAQVCTQ---RSWKRPYGVGLLVAGLDE------KGAHLYYNCPSGNYFE-----YQAFAIGSRS-----------QA 167 (279)
Q Consensus 113 ~~~~q~~t~---~~~~RP~gv~~lvaG~D~------~Gp~Ly~iDp~G~~~~-----~~~~aiG~gs-----------~~ 167 (279)
..+=-.... +...|-.+- +|++-+-. .--.||.+.-.=.+.+ ..-...|.+| +.
T Consensus 54 ~Elgv~i~I~D~r~KV~~~~~-vlvGEV~s~~g~~skRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfGNk~~K~i 132 (194)
T PF09894_consen 54 EELGVKIKITDDREKVRKIGD-VLVGEVTSISGKDSKRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFGNKFTKEI 132 (194)
T ss_pred HHcCCEEEEecCchheEEeCC-EEEEEEEEEcCccceeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEECCHHHHHH
Confidence 442111111 111122222 44443332 2245666422211111 1122334443 66
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecC
Q 023620 168 AKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAG 217 (279)
Q Consensus 168 a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~ 217 (279)
+...|.++|+ +.|+++++.++..++|..+.......+..+++...++.
T Consensus 133 a~~~lkk~~~--~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 133 ANKELKKYWK--PKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred HHHHHHHhcC--CCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 7788889998 89999999999999999987666666778888877764
No 52
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.05 E-value=1 Score=39.95 Aligned_cols=169 Identities=14% Similarity=0.148 Sum_probs=103.7
Q ss_pred CeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQL 112 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l 112 (279)
+.+|+..+++|+|+|.|+|. +.+-|.-.|.+.|-+.| ..|.--|-+.|.+++
T Consensus 2 tLviay~gknGaviaGDrR~-------------------i~frgdee~re~lEekL---------YsGeIkteEEL~r~a 53 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE-------------------ITFRGDEEDREKLEEKL---------YSGEIKTEEELARKA 53 (293)
T ss_pred eEEEEEecCCCcEEeccceE-------------------EEEecChhHHHHHHHHh---------hcCccccHHHHHHHH
Confidence 56899999999999999873 45667777766655433 234445566777776
Q ss_pred HHHHHHhhh---ccCCCCcceeeEEEEEeCCC------cEEEEEcCCceEEe-----eceEEecCC-----------cHH
Q 023620 113 ADKAQVCTQ---RSWKRPYGVGLLVAGLDEKG------AHLYYNCPSGNYFE-----YQAFAIGSR-----------SQA 167 (279)
Q Consensus 113 ~~~~q~~t~---~~~~RP~gv~~lvaG~D~~G------p~Ly~iDp~G~~~~-----~~~~aiG~g-----------s~~ 167 (279)
.++--.++. +...|-..-+++++-+...+ -.+|.+--.=.+.+ .-....|.| -+.
T Consensus 54 eel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~Gnk~~Ke~ 133 (293)
T COG4079 54 EELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFGNKFTKEV 133 (293)
T ss_pred HHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEECcHHHHHH
Confidence 654322221 12223333445555454322 34555422211111 112223332 244
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC-CEEEeCHHHHHHH
Q 023620 168 AKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKL 231 (279)
Q Consensus 168 a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-~f~~l~~~ei~~~ 231 (279)
+..+|.++|. +.++++++.+....+|..+.......+..++|..+.+.- ++.+|-+..|+.+
T Consensus 134 aneflk~~l~--~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~~~rl~kkDie~L 196 (293)
T COG4079 134 ANEFLKDNLT--KKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDPVLRLVKKDIETL 196 (293)
T ss_pred HHHHHHhhcc--CCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCHHHHHHHHHHHHH
Confidence 6667888887 789999999999999988876667778899999998753 3666666665443
No 53
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=74.01 E-value=7.2 Score=31.52 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=60.6
Q ss_pred EEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeC
Q 023620 145 YYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILD 224 (279)
Q Consensus 145 y~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~ 224 (279)
..+|-+|.+...+|-..|.||..|-+-+-..|- ..+++||+..+--.-+.. . ++-..+. --..+|-
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewv--kgkt~dea~kIkNteIAK---e--L~LPPVK-------LHCSMLA 136 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWV--KGKTLDEALKIKNTEIAK---E--LSLPPVK-------LHCSMLA 136 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHH--ccccHHHHHhcccHHHHH---h--ccCCchh-------hhhHHHH
Confidence 467889999999999999999999998888887 699999998763222211 1 1111111 1134788
Q ss_pred HHHHHHHHHHhhcccCCC
Q 023620 225 QETVQKLIDSFEIAGTEE 242 (279)
Q Consensus 225 ~~ei~~~l~~~~~~~~~~ 242 (279)
+|.|+..+..++......
T Consensus 137 EDAIKaAikdyk~Kq~~~ 154 (157)
T KOG3361|consen 137 EDAIKAAIKDYKEKQNKP 154 (157)
T ss_pred HHHHHHHHHHHHHhccCC
Confidence 999999999998665433
No 54
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=73.16 E-value=6.7 Score=38.76 Aligned_cols=56 Identities=13% Similarity=0.251 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCCCCCHH--------HHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhc
Q 023620 168 AKTYLERRFENFSESTRE--------DLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 168 a~~~Le~~~~~~~~~s~e--------eai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
+.+-||-+++ .++.++ -.++|++.-|++.+.....+|+. +.-.-.+|.+.|..+++
T Consensus 193 vlSrlEgrl~--~Ni~LeKenIsYlSsgLhHv~tElKeii~nK~YtG~~------------~~~n~~~Vk~ALq~YqE 256 (574)
T PF07462_consen 193 VLSRLEGRLG--KNINLEKENISYLSSGLHHVFTELKEIIKNKKYTGND------------HAKNIAEVKEALQAYQE 256 (574)
T ss_pred HHHHHHHHhc--cccccchhhhhhhhhhHHHHHHHHHHHHhcCCCCCCC------------hhhhHHHHHHHHHHHHH
Confidence 4566777766 455443 47788888888888766565432 22334556666666653
No 55
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=68.11 E-value=33 Score=25.47 Aligned_cols=56 Identities=14% Similarity=0.155 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC-CEEEeCHHHHHHHHHHhhcccCC
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKLIDSFEIAGTE 241 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-~f~~l~~~ei~~~l~~~~~~~~~ 241 (279)
+.++.+++.+.+++...- .....+++.|++.+| +..+-+.+|+++.+.-++..++.
T Consensus 18 ~~~s~e~L~~~v~~~c~~------~~~q~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~ 74 (83)
T cd06404 18 PSISLEELCNEVRDMCRF------HNDQPFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDS 74 (83)
T ss_pred CCcCHHHHHHHHHHHhCC------CCCCcEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcc
Confidence 567888888876664432 345689999999987 78899999999999888876654
No 56
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=40.92 E-value=29 Score=23.81 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=28.0
Q ss_pred eeeCC-CCCcchhchHHHHhccCCeEEEEEeCC
Q 023620 11 TTWSP-AGRLFQVEYAMEAVKQGSAAIGLRSKT 42 (279)
Q Consensus 11 t~fsp-~Grl~QvEYa~~av~~G~tvVgik~~d 42 (279)
|.||+ +|.+-=-+|...|..+|-..|||.-.+
T Consensus 6 t~~S~~~~~~~~~~~~~~a~~~g~~~v~iTDh~ 38 (67)
T smart00481 6 SDYSLLDGALSPEELVKRAKELGLKAIAITDHG 38 (67)
T ss_pred cCCccccccCCHHHHHHHHHHcCCCEEEEeeCC
Confidence 57888 898888899999999999999987766
No 57
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=40.70 E-value=23 Score=22.98 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=24.1
Q ss_pred EecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 023620 160 AIGSRSQAAKTYLERRFENFSESTREDLIKDALM 193 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~ 193 (279)
+.|+....+...+.+... .++++.++.++.+++
T Consensus 12 ~LGy~~~e~~~av~~~~~-~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLE-KPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHH-STTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhc-CCCCCHHHHHHHHHh
Confidence 358888888888888773 289999998887665
No 58
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=39.31 E-value=24 Score=27.86 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=19.4
Q ss_pred CcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEe
Q 023620 8 TDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCV 49 (279)
Q Consensus 8 ~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad 49 (279)
+.+-+|||+|. -|+++|+|+|+---|
T Consensus 70 tHvHvfSpDG~----------------~lSFTYNDhVmhe~d 95 (122)
T PF12566_consen 70 THVHVFSPDGS----------------WLSFTYNDHVMHELD 95 (122)
T ss_pred ccceEECCCCC----------------EEEEEecchhhcccc
Confidence 45668999987 678888888865433
No 59
>PRK09732 hypothetical protein; Provisional
Probab=37.30 E-value=1.1e+02 Score=24.77 Aligned_cols=42 Identities=12% Similarity=0.067 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC---EEEeCH
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP---FHILDQ 225 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~---f~~l~~ 225 (279)
+.||++.|.+++..++..+.+. +..+.|+|++..|. |.+++.
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G~l~a~~RmDg 49 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGGHLLALSRMDD 49 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCCCEEEEEEcCC
Confidence 5699999999999999988653 67899999999873 445544
No 60
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=33.85 E-value=1.4e+02 Score=22.22 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC-CEEEeCHHHHHHHHHHhh
Q 023620 181 ESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKLIDSFE 236 (279)
Q Consensus 181 ~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-~f~~l~~~ei~~~l~~~~ 236 (279)
.++.++..+.+.+.+.. +.+..+.|.+.+.+| .+.+-+.+|+...+..+.
T Consensus 26 ~~s~~~L~~~V~~~f~~------l~~~~ftlky~DeeGDlvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 26 STSYEYLVEKVAAVFPS------LRGKNFQLFWKDEEGDLVAFSSDEELVMALGSLN 76 (87)
T ss_pred CcCHHHHHHHHHHHccc------cCCCcEEEEEECCCCCEEeecCHHHHHHHHHcCC
Confidence 46777777776654422 335789999999988 578999999999888765
No 61
>PF00178 Ets: Ets-domain; InterPro: IPR000418 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, , ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. NMR-analysis of the structure of the Ets domains revealed that it contains three alpha-helixes (1-3) and four-stranded beta-sheets (1-4) arranged in the order alpha1-beta1-beta2-alpha2-alpha3-beta3-beta4 forming a winged helix-turn-helix (wHTH) topology []. The third alpha-helix is responsive to contact to the major groove of the DNA. Different members of the Ets family proteins display distinct DNA binding specificities. The Ets domains and the flanking amino acid sequences of the proteins influence the binding affinity, and the alteration of a single amino acid in the Ets domain can change its DNA binding specificities. Avian leukemia virus E26 is a replication defective retrovirus that induces a mixed erythroid/myeloid leukemia in chickens.This virus carries two distinct oncogenes: v-myb and v-ets. The ets portion of this oncogene is required for the induction of erythroblastosis. V-ets and c-ets-1, its cellular progenitor, have been shown [] to be nuclear DNA-binding proteins. Ets-1 differs slightly from v-ets at its carboxy-terminal region. In most species where it has been sequenced, c-ets-1 exists in various isoforms generated by alternative splicing and differential phosphorylation.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1DUX_F 4AVP_B 1HBX_G 1BC7_C 1K6O_A 1BC8_C 1PUE_E 1FLI_A 2DAO_A 1WWX_A ....
Probab=31.03 E-value=98 Score=22.95 Aligned_cols=27 Identities=33% Similarity=0.530 Sum_probs=23.2
Q ss_pred EEEEe-cCCCEEEeCHHHHHHHHHHhhc
Q 023620 211 VAVVG-AGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 211 I~ii~-k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
|++++ ..+.|+++++++|..+...-+.
T Consensus 21 I~Wt~~~~~eFki~d~~~vA~lWG~~k~ 48 (85)
T PF00178_consen 21 IAWTGKRGGEFKIVDPEAVARLWGKHKN 48 (85)
T ss_dssp EEEEETSTTEEEESSHHHHHHHHHHHTT
T ss_pred eEeeccCCCeEEecCHHHHHHHHHHHcC
Confidence 78888 5578999999999999887765
No 62
>smart00413 ETS erythroblast transformation specific domain. variation of the helix-turn-helix motif
Probab=28.10 E-value=89 Score=23.41 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=23.0
Q ss_pred EEEEEec-CCCEEEeCHHHHHHHHHHhh
Q 023620 210 TVAVVGA-GEPFHILDQETVQKLIDSFE 236 (279)
Q Consensus 210 ~I~ii~k-~~~f~~l~~~ei~~~l~~~~ 236 (279)
-|+++++ +|.|+++++++|..+...-+
T Consensus 20 ~I~W~~k~~g~Fkl~~~~~vA~lWG~~K 47 (87)
T smart00413 20 IIRWTDRDGGEFKLVDPEEVARLWGQRK 47 (87)
T ss_pred eEEeeCCCCCEEEecCHHHHHHHHhhhc
Confidence 4888996 67899999999999988766
No 63
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=27.34 E-value=2e+02 Score=23.50 Aligned_cols=36 Identities=33% Similarity=0.143 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP 219 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~ 219 (279)
+.++++.|.+++..++..+-+ .++.+.|++++..|.
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~----~g~~VtvaVVD~~G~ 41 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQ----LGVPVTVAVVDAGGH 41 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHH----hCCceEEEEECCCCC
Confidence 678999999999999988754 288999999999874
No 64
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=27.32 E-value=1.1e+02 Score=24.12 Aligned_cols=41 Identities=32% Similarity=0.292 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC---EEEeC
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP---FHILD 224 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~---f~~l~ 224 (279)
|.+|+++|.+++..++..+.++ +.++.|+||+..|. |.+++
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~~~~~r~d 44 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHLLAFARMD 44 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-EEEEEE-T
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCEEEEEecC
Confidence 3578999999999999988764 45688999999874 44555
No 65
>PF08529 NusA_N: NusA N-terminal domain; InterPro: IPR013735 This entry represents the N-terminal RNA polymerase-binding domain of bacterial transcription factors such as NusA (N-utilising substance A). NusA is involved in transcriptional pausing, termination and anti-termination. NusA from Thermotoga maritima contains an N-terminal domain and three RNA-binding domains (one S1 domain and two KH domains). The N-terminal domain consists of a bifurcated coiled beta-sheet within an alpha/beta(3)/alpha/beta/alpha fold, which can be divided into two subdomains: a globular head and a helical body. The globular head subdomain may interact with RNA polymerase, while the helical body displays a similar structure to that of the helical domain in sigma70 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0031554 regulation of transcription termination, DNA-dependent; PDB: 1K0R_B 1HH2_P 1L2F_A 2KWP_A.
Probab=25.77 E-value=2.2e+02 Score=22.24 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEe
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 223 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l 223 (279)
.+++.+..+.....||..++.+......+++|-+=...|.++++
T Consensus 13 k~i~~e~v~~ale~al~~a~kK~~~~~~~~~v~id~~~g~i~v~ 56 (122)
T PF08529_consen 13 KGIDKEVVIEALEEALIKAYKKKYGPEANIRVEIDEDTGEIKVY 56 (122)
T ss_dssp CTB-HHHHHHHHHHHHHHHHHCCTTSSSSEEEEEETTTTEEEEE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCeEEEE
Confidence 68999999999999999999887656678888866666666544
No 66
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=25.04 E-value=1.4e+02 Score=25.82 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEE
Q 023620 186 DLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFH 221 (279)
Q Consensus 186 eai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~ 221 (279)
|+++..+..|...+..|......++|+||+-++..+
T Consensus 22 ealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~~a~ 57 (207)
T COG4245 22 EALNAGLQMMIDTLKQDPYALERVELSIVTFGGPAR 57 (207)
T ss_pred HHHHHHHHHHHHHHHhChhhhheeEEEEEEecCcce
Confidence 477777788888888888888899999999987554
No 67
>KOG3806 consensus Predicted transcription factor [Transcription]
Probab=24.31 E-value=1e+02 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=23.3
Q ss_pred EEEEEecCC-CEEEeCHHHHHHHHHHhhc
Q 023620 210 TVAVVGAGE-PFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 210 ~I~ii~k~~-~f~~l~~~ei~~~l~~~~~ 237 (279)
-|++.+++| .|++++++||..++..-+.
T Consensus 87 ~I~Wtg~~g~EFkl~dp~eVArlWG~rK~ 115 (177)
T KOG3806|consen 87 IIAWTGKDGLEFKLVDPDEVARLWGARKN 115 (177)
T ss_pred eeEEeCCCCceEEecCHHHHHHHHhhhhC
Confidence 378888877 8999999999998876653
No 68
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=24.12 E-value=3.4e+02 Score=20.99 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=35.8
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHH---HHhccCccCC-----CcEEEEEE--ecCCCEE----EeCHHHHHHHHHHh
Q 023620 170 TYLERRFENFSESTREDLIKDALMAIR---ETLQGETLKS-----SICTVAVV--GAGEPFH----ILDQETVQKLIDSF 235 (279)
Q Consensus 170 ~~Le~~~~~~~~~s~eeai~~a~~al~---~~~~~d~~~~-----~~i~I~ii--~k~~~f~----~l~~~ei~~~l~~~ 235 (279)
+++++.=+ -+|.|.++..+.+|++ ...++..... .+.-+.+. .++|... +=+.++|+.||+.+
T Consensus 9 ~~vDRiaN---ALs~E~v~~aL~dAlR~~~s~~~s~ei~~~~~~~~~~y~~v~~~ekeg~~i~~g~lPt~~eVe~Fl~~v 85 (105)
T PF09702_consen 9 TYVDRIAN---ALSPEAVEVALYDALRIFRSIIDSAEIDKSQVEEGRRYIAVIVKEKEGNYIIVGYLPTDEEVEDFLDDV 85 (105)
T ss_pred cHHHHHHh---hcCHHHHHHHHHHHHHHHHHHhccccccccccccCccccceeeccCCCCEEecCCCCChHHHHHHHHHH
Confidence 45655432 5777776666655555 4444433222 22222333 4455443 33678899999988
Q ss_pred hc
Q 023620 236 EI 237 (279)
Q Consensus 236 ~~ 237 (279)
++
T Consensus 86 ~~ 87 (105)
T PF09702_consen 86 ER 87 (105)
T ss_pred HH
Confidence 74
No 69
>COG1647 Esterase/lipase [General function prediction only]
Probab=24.02 E-value=4.7e+02 Score=23.34 Aligned_cols=111 Identities=17% Similarity=0.152 Sum_probs=59.8
Q ss_pred EEecchhHHHHHHHHHHHHHHhhhc----ccCCCCCHHHHHH-----HHHHHHHHhhhccCCCCcceeeEEEEEeCCCc-
Q 023620 73 AIAGLTADGRVLSRYMRSECINYSY----TYESPLPVGRLVV-----QLADKAQVCTQRSWKRPYGVGLLVAGLDEKGA- 142 (279)
Q Consensus 73 ~~sG~~aD~~~l~~~lr~~~~~y~~----~~~~~i~~~~la~-----~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp- 142 (279)
|++|..+|++.|.++|+.. .|.. --|.-.+++.+.+ ++.+..-.|.+.... =.-++-|+|+.=.|-
T Consensus 23 GFTGt~~Dvr~Lgr~L~e~--GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~--gy~eI~v~GlSmGGv~ 98 (243)
T COG1647 23 GFTGTPRDVRMLGRYLNEN--GYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEA--GYDEIAVVGLSMGGVF 98 (243)
T ss_pred ccCCCcHHHHHHHHHHHHC--CceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHc--CCCeEEEEeecchhHH
Confidence 7889999999999999865 3321 1244445544432 333333333322111 123455667654331
Q ss_pred ---EEEEEcCCceEEeeceEEecCCcHHHHHHHH--HhhcCCCCCCHHHH
Q 023620 143 ---HLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE--RRFENFSESTREDL 187 (279)
Q Consensus 143 ---~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le--~~~~~~~~~s~eea 187 (279)
-=+..+|.|-+.-+-.+..=+....+.++|+ ++++++++.+.+++
T Consensus 99 alkla~~~p~K~iv~m~a~~~~k~~~~iie~~l~y~~~~kk~e~k~~e~~ 148 (243)
T COG1647 99 ALKLAYHYPPKKIVPMCAPVNVKSWRIIIEGLLEYFRNAKKYEGKDQEQI 148 (243)
T ss_pred HHHHHhhCCccceeeecCCcccccchhhhHHHHHHHHHhhhccCCCHHHH
Confidence 1244556666554444444455666777777 66666555555443
No 70
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=23.50 E-value=66 Score=25.83 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=26.5
Q ss_pred eeeC-CCCCcchhchHHHHhccCCeEEEEEeC
Q 023620 11 TTWS-PAGRLFQVEYAMEAVKQGSAAIGLRSK 41 (279)
Q Consensus 11 t~fs-p~Grl~QvEYa~~av~~G~tvVgik~~ 41 (279)
|.|| .+|..---||+..|.++|=+.|||+-.
T Consensus 7 T~~s~~dg~~~~~e~v~~A~~~Gl~~i~iTDH 38 (175)
T PF02811_consen 7 TKYSILDGKDSPEEYVEQAKEKGLDAIAITDH 38 (175)
T ss_dssp -TTTSSTSSSSHHHHHHHHHHTTESEEEEEEE
T ss_pred ccCcchhhcCCHHHHHHHHHHcCCCEEEEcCC
Confidence 5688 899998899999999999999887654
No 71
>PF11773 PulG: Type II secretory pathway pseudopilin ; InterPro: IPR021749 The secreton (type II secretion) and type IV pilus biogenesis branches of the general secretory pathway in Gram-negative bacteria share many features that suggest a common evolutionary origin. Five components of the secreton, the pseudopilins, are similar to subunits of type IV pili. Pseudopilin PulG is one of the secreton pseudopilins, and is found to assemble into pilus-like bundles []. PulG interacts with proteins H, I and J within the multi-protein complex as well as blocking extracellular secretion and reducing the amount of PulE protein as well as the amounts of PulL, PulM, PulC and PulD when G is over-expressed []. In Klebsiella the pilus-like structure is composed largely of PulG [].
Probab=23.05 E-value=1.5e+02 Score=21.94 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCH
Q 023620 182 STREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQ 225 (279)
Q Consensus 182 ~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~ 225 (279)
+-.+|++.+|.-|+... -+.++-++++|.+...++...+.+.
T Consensus 34 l~qqEvLnvA~MAvQT~--Q~~L~lNGv~V~v~~~~~~i~V~~~ 75 (82)
T PF11773_consen 34 LQQQEVLNVAQMAVQTG--QDHLSLNGVEVQVERTQKGIIVYEG 75 (82)
T ss_pred HHHHHHHHHHHHHHHhC--cceEEEcCeEEEEEEcCCeEEEEeC
Confidence 35689999999999864 4568888999999988876665544
No 72
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=22.97 E-value=39 Score=20.35 Aligned_cols=11 Identities=36% Similarity=1.020 Sum_probs=7.0
Q ss_pred ceeeCCCCCcc
Q 023620 10 VTTWSPAGRLF 20 (279)
Q Consensus 10 ~t~fsp~Grl~ 20 (279)
--.|||+||-+
T Consensus 13 ~p~~SpDGk~i 23 (39)
T PF07676_consen 13 SPAWSPDGKYI 23 (39)
T ss_dssp EEEE-TTSSEE
T ss_pred CEEEecCCCEE
Confidence 44799999743
No 73
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=22.77 E-value=1.8e+02 Score=28.24 Aligned_cols=125 Identities=19% Similarity=0.223 Sum_probs=70.7
Q ss_pred cCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCC-CCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC------
Q 023620 67 DDHIGVAIAGLTADGRVLSRYMRSECINYSYTYES-PLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE------ 139 (279)
Q Consensus 67 ~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~-~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~------ 139 (279)
.|-|+.+-+|..--+-.+.=.+..-.++-+.-+.- -.|.+.||..|+......++..+ +-|.+||+|.|-
T Consensus 99 ~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ig---lr~~~lvGG~~m~~q~~~ 175 (476)
T KOG0330|consen 99 RDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIG---LRVAVLVGGMDMMLQANQ 175 (476)
T ss_pred CcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccC---eEEEEEecCchHHHHHHH
Confidence 35577888888777777776666655544332322 23678999999998877765554 468899999983
Q ss_pred --CCcEEEEEcCCceEEeeceEEecCCcHHHHH-HHHHhhcCCCCCCHHHHHHHHHHHHH
Q 023620 140 --KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKT-YLERRFENFSESTREDLIKDALMAIR 196 (279)
Q Consensus 140 --~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~-~Le~~~~~~~~~s~eeai~~a~~al~ 196 (279)
..||+.. -.-|..++.---.-|.+-...+- +|+.- ..+-+|+.++-++-+++.+-
T Consensus 176 L~kkPhilV-aTPGrL~dhl~~Tkgf~le~lk~LVlDEA-DrlLd~dF~~~ld~ILk~ip 233 (476)
T KOG0330|consen 176 LSKKPHILV-ATPGRLWDHLENTKGFSLEQLKFLVLDEA-DRLLDMDFEEELDYILKVIP 233 (476)
T ss_pred hhcCCCEEE-eCcHHHHHHHHhccCccHHHhHHHhhchH-HhhhhhhhHHHHHHHHHhcC
Confidence 4599843 33343332211112222111111 11110 01245777777777666543
No 74
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=22.42 E-value=1.8e+02 Score=19.11 Aligned_cols=32 Identities=25% Similarity=0.180 Sum_probs=25.5
Q ss_pred EEEcCCceEEeeceEEecCCcHHHHHHHHHhh
Q 023620 145 YYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 176 (279)
Q Consensus 145 y~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 176 (279)
|.|+|+|.+...--...|+....+...||+..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999887777778888877777777654
No 75
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=21.88 E-value=73 Score=24.57 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.6
Q ss_pred CCcEEEEEcCCceEEe
Q 023620 140 KGAHLYYNCPSGNYFE 155 (279)
Q Consensus 140 ~Gp~Ly~iDp~G~~~~ 155 (279)
++|+||++||.+...+
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 5799999999988655
No 76
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=20.39 E-value=3.6e+02 Score=21.06 Aligned_cols=53 Identities=17% Similarity=0.115 Sum_probs=37.3
Q ss_pred EEEcCC-ceEEeeceEEecCCcH-HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhc
Q 023620 145 YYNCPS-GNYFEYQAFAIGSRSQ-AAKTYLERRFENFSESTREDLIKDALMAIRETLQ 200 (279)
Q Consensus 145 y~iDp~-G~~~~~~~~aiG~gs~-~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~ 200 (279)
..+|.+ |.+...+|.+.|..-- .+-+++-+..+ +.+++||..+..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~---gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIK---GKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHT---TSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHh
Confidence 456777 8888999999995443 34445545554 89999998887666666554
Done!