Query 023620
Match_columns 279
No_of_seqs 176 out of 1276
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 09:56:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iru_F 20S proteasome; cell cy 100.0 2E-66 6.8E-71 466.1 25.7 236 1-236 1-237 (263)
2 1ryp_F 20S proteasome; multica 100.0 1.2E-65 4E-70 453.3 21.7 230 2-232 1-233 (233)
3 1ryp_A 20S proteasome; multica 100.0 1.4E-64 4.9E-69 449.0 28.0 230 4-237 1-241 (243)
4 1yar_A Proteasome alpha subuni 100.0 9.2E-65 3.2E-69 447.5 26.5 229 1-232 3-233 (233)
5 1j2p_A Alpha-ring, proteasome 100.0 2.2E-64 7.7E-69 448.6 28.4 236 1-240 3-241 (246)
6 1iru_C 20S proteasome; cell cy 100.0 9.5E-64 3.3E-68 448.2 29.6 237 1-240 1-245 (261)
7 1iru_B 20S proteasome; cell cy 100.0 4.1E-64 1.4E-68 443.3 26.7 229 3-235 2-232 (233)
8 1iru_E 20S proteasome; cell cy 100.0 2.7E-64 9.3E-69 446.7 25.3 231 1-234 3-240 (241)
9 1iru_A 20S proteasome; cell cy 100.0 2E-63 6.7E-68 442.4 29.5 233 4-237 7-244 (246)
10 3h4p_A Proteasome subunit alph 100.0 1.1E-64 3.7E-69 454.9 21.1 237 2-242 8-247 (264)
11 1ryp_C 20S proteasome; multica 100.0 4.9E-63 1.7E-67 439.2 29.2 231 5-237 4-243 (244)
12 1ryp_D 20S proteasome; multica 100.0 6.5E-63 2.2E-67 437.8 28.1 232 5-239 1-238 (241)
13 1iru_G 20S proteasome; cell cy 100.0 3.4E-63 1.2E-67 443.0 25.9 237 3-241 4-245 (254)
14 1iru_D 20S proteasome; cell cy 100.0 3.3E-63 1.1E-67 441.6 25.2 229 6-239 3-236 (248)
15 1ryp_E 20S proteasome; multica 100.0 1.7E-62 5.9E-67 435.3 26.2 232 7-241 1-241 (242)
16 3nzj_F Proteasome component C1 100.0 7E-62 2.4E-66 441.1 27.6 236 3-240 5-248 (288)
17 1ryp_B 20S proteasome; multica 100.0 3.5E-61 1.2E-65 428.9 28.4 230 1-234 1-249 (250)
18 1ryp_G 20S proteasome; multica 100.0 1E-60 3.5E-65 424.6 27.5 230 3-235 1-238 (244)
19 1q5q_A Proteasome alpha-type s 100.0 2.6E-54 8.9E-59 386.6 20.0 226 11-246 5-246 (259)
20 3mi0_A Proteasome subunit alph 100.0 3.9E-50 1.3E-54 357.1 26.2 205 21-235 16-237 (248)
21 3h4p_a Proteasome subunit beta 100.0 2E-48 6.7E-53 340.3 23.0 206 32-244 1-211 (219)
22 1yar_H Proteasome beta subunit 100.0 2.1E-47 7.2E-52 333.3 25.8 204 27-237 3-209 (217)
23 1j2q_H Proteasome beta subunit 100.0 1.1E-46 3.9E-51 324.9 24.8 197 33-236 1-201 (202)
24 3nzj_K Proteasome component PR 100.0 5E-47 1.7E-51 343.5 21.7 222 13-241 50-281 (287)
25 1q5r_H Proteasome beta-type su 100.0 1.2E-46 4.2E-51 342.0 23.6 214 25-242 58-289 (294)
26 1iru_L 20S proteasome; cell cy 100.0 2.4E-46 8.2E-51 323.3 22.1 199 33-238 1-202 (204)
27 1iru_N 20S proteasome; cell cy 100.0 1E-46 3.5E-51 329.1 18.4 204 26-232 2-209 (219)
28 2jay_A Proteasome; hydrolase; 100.0 3.3E-46 1.1E-50 338.9 22.3 231 4-239 23-278 (291)
29 1ryp_L 20S proteasome; multica 100.0 7.6E-46 2.6E-50 322.1 22.5 203 33-242 1-207 (212)
30 1q5q_H Proteasome beta-type su 100.0 1.7E-45 6E-50 324.9 23.7 208 33-244 1-226 (235)
31 1ryp_N 20S proteasome; multica 100.0 2.2E-46 7.7E-51 330.1 16.8 202 26-231 2-217 (233)
32 1iru_H 20S proteasome; cell cy 100.0 1.1E-45 3.7E-50 319.5 18.6 194 33-233 1-199 (205)
33 3nzj_H Proteasome component PU 100.0 1.8E-44 6.2E-49 322.9 24.5 197 25-228 22-221 (261)
34 1g0u_M Proteasome component PR 100.0 9E-46 3.1E-50 332.4 15.0 206 22-231 31-250 (266)
35 1ryp_K 20S proteasome; multica 100.0 3.4E-44 1.2E-48 308.4 22.8 188 33-225 2-194 (198)
36 1iru_M 20S proteasome; cell cy 100.0 5.4E-44 1.9E-48 310.5 24.0 188 29-221 6-204 (213)
37 3unf_H Proteasome subunit beta 100.0 2.1E-44 7.1E-49 317.9 21.0 190 33-230 1-193 (234)
38 1ryp_H 20S proteasome; multica 100.0 2.3E-44 7.8E-49 311.3 20.8 188 26-221 3-194 (205)
39 1ryp_I 20S proteasome; multica 100.0 4E-43 1.4E-47 307.3 23.6 188 33-227 1-191 (222)
40 1ryp_M 20S proteasome; multica 100.0 5.4E-43 1.9E-47 306.4 23.4 187 28-221 5-213 (222)
41 1iru_J 20S proteasome; cell cy 100.0 1.1E-42 3.6E-47 300.7 23.5 184 29-218 5-194 (205)
42 1ryp_J 20S proteasome; multica 100.0 1.9E-42 6.6E-47 298.9 24.6 184 28-218 4-193 (204)
43 3unf_N Proteasome subunit beta 100.0 1.4E-43 4.9E-48 304.7 17.0 191 33-232 1-197 (199)
44 1iru_K 20S proteasome; cell cy 100.0 1.7E-42 5.8E-47 298.5 22.4 187 33-224 2-192 (201)
45 1iru_I 20S proteasome; cell cy 100.0 4.8E-42 1.7E-46 302.7 22.7 187 33-227 1-190 (234)
46 2z3b_A ATP-dependent protease 100.0 1.2E-35 4.2E-40 251.9 19.4 167 30-214 3-179 (180)
47 1m4y_A ATP-dependent protease 100.0 6.3E-35 2.2E-39 245.3 19.9 165 33-214 1-171 (171)
48 1g3k_A ATP-dependent protease 100.0 9.5E-35 3.2E-39 245.0 19.6 166 33-215 1-173 (174)
49 1vd2_A Protein kinase C, IOTA 60.8 19 0.00065 26.0 5.6 56 180-241 24-80 (89)
50 1hbx_G ETS-domain protein ELK- 32.6 41 0.0014 26.8 3.8 27 211-237 25-51 (157)
51 1bc8_C SAP-1, protein (SAP-1 E 28.5 27 0.00093 25.4 1.9 28 211-238 24-51 (93)
52 3rj2_X ORF158L protein, putati 27.7 14 0.00048 28.2 0.2 15 6-20 55-69 (138)
53 2yxo_A Histidinol phosphatase; 27.1 34 0.0012 28.6 2.7 32 11-42 8-39 (267)
54 3fpw_A HBPS, extracellular HAE 26.8 1.4E+02 0.0049 24.5 6.3 42 179-224 62-106 (192)
55 2lrg_A Uncharacterized protein 26.4 42 0.0014 25.0 2.6 36 121-158 16-52 (126)
56 1fli_A FLI-1; transcription/DN 25.8 36 0.0012 25.0 2.1 28 211-238 25-52 (98)
57 1yo5_C SAM pointed domain cont 25.2 90 0.0031 22.8 4.2 27 211-237 31-58 (97)
58 3jx9_A Putative phosphoheptose 24.8 40 0.0014 27.2 2.5 31 10-40 81-112 (170)
59 4gof_A Small glutamine-rich te 23.1 1.3E+02 0.0045 19.2 4.3 35 167-202 8-44 (52)
60 4avp_A ETS translocation varia 23.1 70 0.0024 23.7 3.4 27 211-237 31-57 (106)
61 2kwp_A Transcription elongatio 22.7 1.5E+02 0.0052 22.5 5.4 44 180-223 16-59 (129)
62 1awc_A Protein (GA binding pro 22.6 42 0.0014 25.2 2.0 27 211-237 20-46 (110)
63 2a2l_A Unknown; structural gen 21.2 1.1E+02 0.0037 23.7 4.4 42 180-225 10-54 (145)
64 3jtz_A Integrase; four strande 20.4 68 0.0023 22.7 2.7 55 137-199 21-76 (88)
No 1
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2e-66 Score=466.13 Aligned_cols=236 Identities=53% Similarity=0.935 Sum_probs=225.8
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhH
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
|||++||+++|+|||+|||||||||+||+++|+|+|||+++||||||+|+|.++++.++.+|||+|++||+|+++|+.+|
T Consensus 1 m~~~~yd~~~t~fsP~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl~~~~~KI~~i~~~i~~~~aG~~aD 80 (263)
T 1iru_F 1 MFRNQYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSELAAHQKKILHVDNHIGISIAGLTAD 80 (263)
T ss_dssp ---CTTTSCTTCCCTTSCCHHHHHHHHHHHHSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHH
T ss_pred CCcCCCCCCCccCCCCCeehHHHHHHHHHHcCCcEEEEEeCCEEEEEEecccccccccchhcEEEEcCCEEEEEeCCHHH
Confidence 99999999999999999999999999999999999999999999999999999998778899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.|+++++.++..|+++++.+++++.+++++++++|.|||+++.|||+|++||||||++||+||++||+|++.+++++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a 160 (263)
T 1iru_F 81 ARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMS 160 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccC-ccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhh
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 236 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d-~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~ 236 (279)
+|+++++++++||++|+.+++|+++||++++++||+.++++| .+++++++|++|+++++|+++++++|+++++.+.
T Consensus 161 iGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~~~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 161 IGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDLEFTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp ESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTEEEEEECSGGGHHHHTTCC
T ss_pred cCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHh
Confidence 999999999999999993339999999999999999999999 5899999999999996799999999999999874
No 2
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.2e-65 Score=453.29 Aligned_cols=230 Identities=51% Similarity=0.769 Sum_probs=221.3
Q ss_pred CCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhHH
Q 023620 2 FRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADG 81 (279)
Q Consensus 2 ~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD~ 81 (279)
||++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++.++.+|||+|++||+|+++|+.+|+
T Consensus 1 ~~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (233)
T 1ryp_F 1 FRNNYDGDTVTFSPTGRLFQVEYALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQKKIIKCDEHMGLSLAGLAPDA 80 (233)
T ss_dssp CHHHHSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSEEEEEEECCCSSTTBCCCCCEEEEETTEEEEEEECHHHH
T ss_pred CCCcccCCCccCCCCCeehHHHHHHHHHHcCCCEEEEEcCCEEEEEEEeccccccccccCcEEEEcCCEEEEEEechHHH
Confidence 78999999999999999999999999999999999999999999999999999987788999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEe
Q 023620 82 RVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAI 161 (279)
Q Consensus 82 ~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~ai 161 (279)
+.|+++++.+++.|++++++++|++.+++++++++|.|||+++.|||+|++||||||++||+||++||+|++.+++++|+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~ai 160 (233)
T 1ryp_F 81 RVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAI 160 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred cCCcHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHHhccC-ccCCCcEEEEEEecCCCEEEeCHHHHHHHH
Q 023620 162 GSRSQAAKTYLERRFENFSES--TREDLIKDALMAIRETLQGE-TLKSSICTVAVVGAGEPFHILDQETVQKLI 232 (279)
Q Consensus 162 G~gs~~a~~~Le~~~~~~~~~--s~eeai~~a~~al~~~~~~d-~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l 232 (279)
|++++.++++||++|+.+++| +++||++++++||..++ +| ..++++++|++|+++++|++++++||+++|
T Consensus 161 G~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 161 GARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDTPFTIYDGEAVAKYI 233 (233)
T ss_dssp STTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTEEEEEEEGGGGGGGC
T ss_pred CCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 999999999999999932399 99999999999999998 77 589999999999999779999999998764
No 3
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.4e-64 Score=448.97 Aligned_cols=230 Identities=30% Similarity=0.495 Sum_probs=222.3
Q ss_pred CCCCCcceeeCCCCCcchhchHHHHhcc-CCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 4 ~~yd~~~t~fsp~Grl~QvEYa~~av~~-G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
++||+++|+|||+|||||||||+||+++ |+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.+|
T Consensus 1 ~~yd~~~t~fsp~Grl~QvEYA~~av~~~Gtt~vgi~~~dgVvlaad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 80 (243)
T 1ryp_A 1 AGYDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPD 80 (243)
T ss_dssp CGGGGTSSSCCTTSCCHHHHHHHHHTTTTCCCEEEEECSSEEEEEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHH
T ss_pred CCCCCCCceECCCCeeHHHHHHHHHHhcCCCcEEEEEeCCEEEEEEEecCCccccCCCcCCceEEECCCEEEEEEecHHH
Confidence 4799999999999999999999999999 9999999999999999999999776 578899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
++.|+++++.++.+|++++++++|++.+++++++++|.|+++++.|||+|++||||||+ .||+||++||+|++.+++++
T Consensus 81 ~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~ 160 (243)
T 1ryp_A 81 ARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKAT 160 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999996 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcCCC-------CCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHH
Q 023620 160 AIGSRSQAAKTYLERRFENFS-------ESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~-------~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l 232 (279)
|+|++++.++++||++|+ + +|+++||++++++||..+++|| +++++++|++|+++| |+++++++|++++
T Consensus 161 a~G~gs~~a~~~Le~~~~--~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g-~~~l~~~ei~~~~ 236 (243)
T 1ryp_A 161 ATGPKQQEITTNLENHFK--KSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK-FFTLSAENIEERL 236 (243)
T ss_dssp EESTTHHHHHHHHHHHHH--HHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE-EEECCHHHHHHHH
T ss_pred EECCCcHHHHHHHHHHhh--hcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC-eEECCHHHHHHHH
Confidence 999999999999999998 6 9999999999999999999999 889999999999997 9999999999999
Q ss_pred HHhhc
Q 023620 233 DSFEI 237 (279)
Q Consensus 233 ~~~~~ 237 (279)
+.+.+
T Consensus 237 ~~~~~ 241 (243)
T 1ryp_A 237 VAIAE 241 (243)
T ss_dssp HHHTT
T ss_pred HHhhc
Confidence 98843
No 4
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=9.2e-65 Score=447.46 Aligned_cols=229 Identities=36% Similarity=0.547 Sum_probs=212.3
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecch
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLT 78 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~ 78 (279)
|+|++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~ 82 (233)
T 1yar_A 3 QGQMAYSRAITVFSPDGRLFQVEYAREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLV 82 (233)
T ss_dssp ----------CCCCTTSCCHHHHHHHHHHTTSCCEEEEEETTEEEEEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBH
T ss_pred cccccCCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEeccCCcccccccccCeEEEecCCEEEEEeeCH
Confidence 78999999999999999999999999999999999999999999999999999886 4677999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeece
Q 023620 79 ADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQA 158 (279)
Q Consensus 79 aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~ 158 (279)
+|++.|.++++.++..|+++++++++++.+++++++++|.|+++.+.|||+|++||||||++||+||.+||+|++.++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~ 162 (233)
T 1yar_A 83 ADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKA 162 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeE
Confidence 99999999999999999999999999999999999999999999999999999999999998999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHH
Q 023620 159 FAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232 (279)
Q Consensus 159 ~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l 232 (279)
+|+|+|+++++++||++|+ ++|+++||++++++||+.+.++|. ++++++|++|+++++|++++++||+++|
T Consensus 163 ~aiG~gs~~a~~~Le~~~~--~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~~~~~~~~~ei~~~l 233 (233)
T 1yar_A 163 TAIGSGKDAVVSFLEREYK--ENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGNKYRIYDQEEVKKFL 233 (233)
T ss_dssp EEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTSCCEECCHHHHHTTC
T ss_pred EEEcCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCCCEEECCHHHHHhhC
Confidence 9999999999999999999 899999999999999999999987 7999999999999889999999998764
No 5
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=2.2e-64 Score=448.55 Aligned_cols=236 Identities=34% Similarity=0.523 Sum_probs=225.9
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecch
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLT 78 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~ 78 (279)
|++++||+++|+|||+|||||||||++++++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.
T Consensus 3 ~~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~ 82 (246)
T 1j2p_A 3 LPQMGYDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLV 82 (246)
T ss_dssp -CCTTSSSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECH
T ss_pred ccccCcCCCCceECCCCeehHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCccccccCccCcEEEECCCEEEEEeEcc
Confidence 45999999999999999999999999999999999999999999999999999886 4678999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeece
Q 023620 79 ADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQA 158 (279)
Q Consensus 79 aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~ 158 (279)
+|++.|.++++.++..|+++++.+++++.+++++++++|.|+++.+.|||+|++|||||| +||+||.+||+|++.++++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~ 161 (246)
T 1j2p_A 83 ADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKA 161 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC-CCCEEEEECCCceEEeeeE
Confidence 999999999999999999999999999999999999999999999999999999999999 8999999999999999999
Q ss_pred EEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEe-cCCCEEEeCHHHHHHHHHHhhc
Q 023620 159 FAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVG-AGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 159 ~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~-k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
+|+|+|+++++++||++|+ ++|+++||++++++||..+.++ ..++++++|++|+ ++++|+++++++|+++++.+..
T Consensus 162 ~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~l~~~ei~~~~~~~~~ 238 (246)
T 1j2p_A 162 TAIGMGRMAVTEFFEKEYR--DDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANE 238 (246)
T ss_dssp EEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCCCEECCHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCceEECCHHHHHHHHHHHHH
Confidence 9999999999999999999 8999999999999999999998 8899999999999 7667999999999999999965
Q ss_pred ccC
Q 023620 238 AGT 240 (279)
Q Consensus 238 ~~~ 240 (279)
.++
T Consensus 239 ~~~ 241 (246)
T 1j2p_A 239 RIR 241 (246)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 6
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=9.5e-64 Score=448.22 Aligned_cols=237 Identities=33% Similarity=0.549 Sum_probs=225.6
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecc
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGL 77 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~ 77 (279)
|.+ +||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ +++.+|||+|++||+|+++|+
T Consensus 1 m~~-~yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~ 79 (261)
T 1iru_C 1 MSR-RYDSRTTIFSPEGRLYQVEYAMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGI 79 (261)
T ss_dssp -CT-TTCCCTTCCCTTSCCHHHHHHHHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEEC
T ss_pred CCC-ccCCCCccCCCCCeehHHHhHHHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEc
Confidence 544 9999999999999999999999999999999999999999999999999886 345899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEee
Q 023620 78 TADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEY 156 (279)
Q Consensus 78 ~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~ 156 (279)
.+|++.|+++++.++..|+++++.++|++.+++++++++|.|+++++.|||+|++||||||+ .||+||.+||+|++.++
T Consensus 80 ~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (261)
T 1iru_C 80 TSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGW 159 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEee
Confidence 99999999999999999999999999999999999999999999999999999999999995 78999999999999999
Q ss_pred ceEEecCCcHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC---EEEeCHHHHHHHH
Q 023620 157 QAFAIGSRSQAAKTYLERRFENFS-ESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP---FHILDQETVQKLI 232 (279)
Q Consensus 157 ~~~aiG~gs~~a~~~Le~~~~~~~-~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~---f~~l~~~ei~~~l 232 (279)
+++|+|+|+++++++|+++|+ + +||++||++++++||..+.++|..++++++|++|+++++ |++|+++||+.++
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~--~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l 237 (261)
T 1iru_C 160 KATCIGNNSAAAVSMLKQDYK--EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLI 237 (261)
T ss_dssp SEEEESTTTTHHHHHHHHHCC--TTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHH
T ss_pred eeEEeCcccHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHH
Confidence 999999999999999999999 7 999999999999999999999999999999999999874 9999999999999
Q ss_pred HHhhcccC
Q 023620 233 DSFEIAGT 240 (279)
Q Consensus 233 ~~~~~~~~ 240 (279)
..+.+.+.
T Consensus 238 ~~~~~~~~ 245 (261)
T 1iru_C 238 KKHEEEEA 245 (261)
T ss_dssp HHHHTTTT
T ss_pred HHHHhchh
Confidence 99965443
No 7
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=4.1e-64 Score=443.33 Aligned_cols=229 Identities=32% Similarity=0.573 Sum_probs=221.7
Q ss_pred CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 3 ~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
|++||+++|+|||+|||||||||++++++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.+|
T Consensus 2 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 81 (233)
T 1iru_B 2 ERGYSFSLTTFSPSGKLVQIEYALAAVAGGAPSVGIKAANGVVLATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPD 81 (233)
T ss_dssp CCCCCSBSCCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSCEEEEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHH
T ss_pred CCCccCCceeECCCCeEehhHhHHHHHHcCCcEEEEEeCCEEEEEEEecCCccccccccCCeEEEECCCEEEEEEEccHH
Confidence 789999999999999999999999999999999999999999999999999776 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.|.++++.++..|+++++.+++++.+++++++++|.|+++++.|||+|++||||||++||+||.+||+|++.+++++|
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~a 161 (233)
T 1iru_B 82 YRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATA 161 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHh
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSF 235 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~ 235 (279)
+|+++++++++||++|+ ++|+++||++++++||+.+.++| .++++++|++|++++ |++++++||+++++.+
T Consensus 162 iG~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g-~~~l~~~ei~~~~~~~ 232 (233)
T 1iru_B 162 MGKNYVNGKTFLEKRYN--EDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAG-FRRLTPTEVKDYLAAI 232 (233)
T ss_dssp ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTE-EEECCHHHHHHHHTTC
T ss_pred ECCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCC-EEECCHHHHHHHHHhc
Confidence 99999999999999999 89999999999999999999999 789999999999987 9999999999998754
No 8
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=2.7e-64 Score=446.68 Aligned_cols=231 Identities=35% Similarity=0.606 Sum_probs=219.5
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecch
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLT 78 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~ 78 (279)
|+|++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.
T Consensus 3 m~~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~ 82 (241)
T 1iru_E 3 LTRSEYDRGVNTFSPEGRLFQVEYDIEAIKLGSTAIGIQTSEGVCLAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLI 82 (241)
T ss_dssp -----CCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECH
T ss_pred CccCCCCCCCceECCCCccHHHHHHHHHHHcCCcEEEEEcCCEEEEEEecccCCcCcCccccceEEEEcCCEEEEEeeCh
Confidence 67999999999999999999999999999999999999999999999999999886 5778999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccC-----CCCcceeeEEEEEeCCCcEEEEEcCCceE
Q 023620 79 ADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSW-----KRPYGVGLLVAGLDEKGAHLYYNCPSGNY 153 (279)
Q Consensus 79 aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~-----~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~ 153 (279)
+|++.|+++++.++..|+++++++++++.+++++++++|.|+++.+ .|||+|++||||||++||+||.+||+|++
T Consensus 83 aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~ 162 (241)
T 1iru_E 83 ADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTF 162 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeCCCCEEEEECCCCcE
Confidence 9999999999999999999999999999999999999999999888 89999999999999888999999999999
Q ss_pred EeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHH
Q 023620 154 FEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLID 233 (279)
Q Consensus 154 ~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~ 233 (279)
.+++++|+|+|+++++++||++|+ ++|+++||++++++||..+.++ ..++++++|++|++++.|++|+++||+++++
T Consensus 163 ~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~ 239 (241)
T 1iru_E 163 VQCDARAIGSASEGAQSSLQELYH--KSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQNFHMFTKEELEEVIK 239 (241)
T ss_dssp EEBSEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSSCCEECCHHHHHHHHT
T ss_pred EecceEEECCCcHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCCCeEECCHHHHHHHHH
Confidence 999999999999999999999999 8999999999999999999999 7889999999999998899999999999986
Q ss_pred H
Q 023620 234 S 234 (279)
Q Consensus 234 ~ 234 (279)
.
T Consensus 240 ~ 240 (241)
T 1iru_E 240 D 240 (241)
T ss_dssp T
T ss_pred h
Confidence 4
No 9
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2e-63 Score=442.41 Aligned_cols=233 Identities=32% Similarity=0.553 Sum_probs=223.3
Q ss_pred CCCCCcceeeCCCCCcchhchHHHHhcc-CCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 4 NQYDTDVTTWSPAGRLFQVEYAMEAVKQ-GSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 4 ~~yd~~~t~fsp~Grl~QvEYa~~av~~-G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
++||+++|+|||+|||||||||++|+++ |+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.+|
T Consensus 7 ~~yd~~~t~fsp~Grl~QvEya~~av~~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD 86 (246)
T 1iru_A 7 AGFDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTAD 86 (246)
T ss_dssp CTTTTTSSCCCTTSCCHHHHHHHHHHHTTCCEEEEEECSSEEEEEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHH
T ss_pred CCcCCCCccCCCCCeehHHHHHHHHHhcCCCCEEEEEeCCEEEEEEeecCCCcccCCCccCceEEECCCEEEEEeccHHH
Confidence 6899999999999999999999999999 9999999999999999999999766 477899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
++.|.++++.++..|+++++++++++.+++++++++|.|+++.+.|||+|++||||||+ .||+||++||+|++.+++++
T Consensus 87 ~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 166 (246)
T 1iru_A 87 SRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKAT 166 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEE
Confidence 99999999999999999999999999999999999999999999999999999999996 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC-EEEeCHHHHHHHHHHhhc
Q 023620 160 AIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQKLIDSFEI 237 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~-f~~l~~~ei~~~l~~~~~ 237 (279)
|+|+++++++++||++|+.+++|+++||++++++||+.+.++| .++++++|++|+++|. |+++++++|+++++.+++
T Consensus 167 aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~~~~~~ 244 (246)
T 1iru_A 167 AAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVENPKFRILTEAEIDAHLVALAE 244 (246)
T ss_dssp EEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTEEEEEECCHHHHHHHHHHHHT
T ss_pred EECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCCCeEEECCHHHHHHHHHHhhc
Confidence 9999999999999999993239999999999999999999999 8999999999999886 999999999999999854
No 10
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-64 Score=454.94 Aligned_cols=237 Identities=36% Similarity=0.562 Sum_probs=220.2
Q ss_pred CCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchh
Q 023620 2 FRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTA 79 (279)
Q Consensus 2 ~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~a 79 (279)
.+++||+++|+|||+|||||||||++||++|+|+|||+++||||||+|+|.++++ .++.+|||+|++||+|+++|+.+
T Consensus 8 ~~~~yd~~~t~fSp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~a 87 (264)
T 3h4p_A 8 PPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVA 87 (264)
T ss_dssp --------CCCCCSSSSCHHHHHHHHHHHHSCCEEEECCSSEEEEEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSH
T ss_pred CccccCCCcceECCCCeeHHHHhHHHHHhcCCcEEEEEECCEEEEEEecCccCCccccCccccEEEecCcEEEEeccchH
Confidence 4678999999999999999999999999999999999999999999999999887 57889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceE
Q 023620 80 DGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 80 D~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
|++.|+++++.+++.|++.++.+++++.++++|++++|.||++++.|||+|++||||||++||+||++||+|++.+++++
T Consensus 88 D~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~ 167 (264)
T 3h4p_A 88 DARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKAT 167 (264)
T ss_dssp HHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEE
T ss_pred HHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeE
Confidence 99999999999999999999999999999999999999999999999999999999999989999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecC-CCEEEeCHHHHHHHHHHhhcc
Q 023620 160 AIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAG-EPFHILDQETVQKLIDSFEIA 238 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~-~~f~~l~~~ei~~~l~~~~~~ 238 (279)
|+|+++.+++++|+++|+ ++|+++||++++++||..+.++ +++++++|++|+++ .+|++|++++|++++..++..
T Consensus 168 aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~~~~~~l~~~ei~~~~~~~~~~ 243 (264)
T 3h4p_A 168 AIGSGRPVVMELLEKEYR--DDITLDEGLELAITALTKANED--IKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKK 243 (264)
T ss_dssp EESTTHHHHTTTHHHHCC--TTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTTTEEEECCTTTTGGGTTTTTTS
T ss_pred EECCCHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCCCcEEECCHHHHHHHHHHHHHh
Confidence 999999999999999999 8999999999999999999987 79999999999986 469999999999999999776
Q ss_pred cCCC
Q 023620 239 GTEE 242 (279)
Q Consensus 239 ~~~~ 242 (279)
.+++
T Consensus 244 ~~~~ 247 (264)
T 3h4p_A 244 LNEE 247 (264)
T ss_dssp SSCC
T ss_pred hhcc
Confidence 6554
No 11
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=4.9e-63 Score=439.23 Aligned_cols=231 Identities=35% Similarity=0.571 Sum_probs=223.2
Q ss_pred CCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHH
Q 023620 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADG 81 (279)
Q Consensus 5 ~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~ 81 (279)
+||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.+|+
T Consensus 4 ~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 83 (244)
T 1ryp_C 4 RYDSRTTIFSPEGRLYQVEYALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83 (244)
T ss_dssp GGCCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHH
T ss_pred ccCCCCceECcCCeeHHHHhHHHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHH
Confidence 7999999999999999999999999999999999999999999999999886 4678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEe-CCCcEEEEEcCCceEEeeceEE
Q 023620 82 RVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 82 ~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D-~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
+.|+++++.++..|+++++++++++.+++++++++|.||++++.|||+|++|||||| +.||+||++||+|++.+++++|
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~a 163 (244)
T 1ryp_C 84 EILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAIS 163 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEE
Confidence 999999999999999999999999999999999999999999999999999999999 7889999999999999999999
Q ss_pred ecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEe--cCCC---EEEeCHHHHHHHHHHh
Q 023620 161 IGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVG--AGEP---FHILDQETVQKLIDSF 235 (279)
Q Consensus 161 iG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~--k~~~---f~~l~~~ei~~~l~~~ 235 (279)
+|+|+++++++||++|+ ++|+++||++++++||..+.++|..++++++|++|+ +++. |++|+++||+++++.+
T Consensus 164 iGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~~~~~~~~l~~~ei~~~~~~~ 241 (244)
T 1ryp_C 164 VGANTSAAQTLLQMDYK--DDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIKDILVKT 241 (244)
T ss_dssp ESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSSSSCEEEECCHHHHHHHHHHH
T ss_pred ECCCcHHHHHHHHHhhh--cCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCCCceeEEECCHHHHHHHHHHh
Confidence 99999999999999999 899999999999999999999977789999999999 9876 9999999999999987
Q ss_pred hc
Q 023620 236 EI 237 (279)
Q Consensus 236 ~~ 237 (279)
+.
T Consensus 242 ~~ 243 (244)
T 1ryp_C 242 GI 243 (244)
T ss_dssp TC
T ss_pred hc
Confidence 63
No 12
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=6.5e-63 Score=437.80 Aligned_cols=232 Identities=33% Similarity=0.539 Sum_probs=220.8
Q ss_pred CCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHH
Q 023620 5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADG 81 (279)
Q Consensus 5 ~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~ 81 (279)
+||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|+
T Consensus 1 ~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~ 80 (241)
T 1ryp_D 1 GYDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADS 80 (241)
T ss_dssp CCCCCCSCCBTTTBCHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHH
T ss_pred CCCCCceeECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHH
Confidence 5999999999999999999999999999999999999999999999999886 2478999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC--CCcEEEEEcCCceEEeeceE
Q 023620 82 RVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE--KGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 82 ~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
+.|.++++.++..|+++++++++++.+++++++++|.||+++++|||+|++||||||+ .||+||++||+|++.+++++
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~ 160 (241)
T 1ryp_D 81 RILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQ 160 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeE
Confidence 9999999999999999999999999999999999999999989999999999999998 78999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcC-CCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcc
Q 023620 160 AIGSRSQAAKTYLERRFEN-FSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIA 238 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~-~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~ 238 (279)
|+|+++++++++||++|++ .++|+++||++++++||..+.+ .++++++|++|+++++|+++++++|+++++.+...
T Consensus 161 aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~~~~~l~~~ei~~~~~~~~~~ 237 (241)
T 1ryp_D 161 TIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQE 237 (241)
T ss_dssp EESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTTEEEECCHHHHHHHHHHHTHH
T ss_pred EECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHhhh
Confidence 9999999999999999921 1899999999999999999985 78999999999999889999999999999998654
Q ss_pred c
Q 023620 239 G 239 (279)
Q Consensus 239 ~ 239 (279)
+
T Consensus 238 ~ 238 (241)
T 1ryp_D 238 K 238 (241)
T ss_dssp H
T ss_pred h
Confidence 4
No 13
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=3.4e-63 Score=442.96 Aligned_cols=237 Identities=33% Similarity=0.466 Sum_probs=226.4
Q ss_pred CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 3 ~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
.++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++||+|+++|+.+|
T Consensus 4 ~~~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 83 (254)
T 1iru_G 4 GTGYDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLAD 83 (254)
T ss_dssp CSSTTSCTTCCCTTSCCHHHHHHHHHHHTSCCEEEEECSSBEEEEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHH
T ss_pred ccccCCCCccCCcCCccHHHHhHHHHHhcCCCEEEEEECCEEEEEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHH
Confidence 468999999999999999999999999999999999999999999999999886 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEe-CCCcEEEEEcCCceEEeeceE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAF 159 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D-~~Gp~Ly~iDp~G~~~~~~~~ 159 (279)
++.|+++++.+++.|+++++.++|++.+++++++++|.|+++++.|||+|++|||||| +.||+||++||+|++.+++++
T Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~ 163 (254)
T 1iru_G 84 ARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGC 163 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeE
Confidence 9999999999999999999999999999999999999999999999999999999999 778999999999999999999
Q ss_pred EecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecC--CCEEEeCHHHHHHHHHHhhc
Q 023620 160 AIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAG--EPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 160 aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~--~~f~~l~~~ei~~~l~~~~~ 237 (279)
|+|+++++++++||++|+ ++|+++||++++++||+.+.+++..++++++|++|+++ |.|+++++++|++++..++.
T Consensus 164 aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~~ 241 (254)
T 1iru_G 164 AIGKARQAAKTEIEKLQM--KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKE 241 (254)
T ss_dssp EESTTHHHHHHHHTTSCG--GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHHhcc--CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHHH
Confidence 999999999999999997 79999999999999999998888778899999999987 56999999999999999987
Q ss_pred ccCC
Q 023620 238 AGTE 241 (279)
Q Consensus 238 ~~~~ 241 (279)
..++
T Consensus 242 ~~~~ 245 (254)
T 1iru_G 242 SLKE 245 (254)
T ss_dssp HHCC
T ss_pred hhhh
Confidence 6664
No 14
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=3.3e-63 Score=441.56 Aligned_cols=229 Identities=36% Similarity=0.589 Sum_probs=220.2
Q ss_pred CCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHHH
Q 023620 6 YDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRV 83 (279)
Q Consensus 6 yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~ 83 (279)
||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++||+|+++|+.+|++.
T Consensus 3 yd~~~t~fsp~Grl~QvEYA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~ 82 (248)
T 1iru_D 3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARI 82 (248)
T ss_dssp CCCCCSCCCTTSCCHHHHHHHHHHHTSCCEEEECCSSEEEEEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHH
T ss_pred ccCCCceECCCCcchHHHHHHHHHHcCCCEEEEEeCCEEEEEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHH
Confidence 999999999999999999999999999999999999999999999999887 467899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEe-CCCcEEEEEcCCceEEeeceEEec
Q 023620 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIG 162 (279)
Q Consensus 84 l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D-~~Gp~Ly~iDp~G~~~~~~~~aiG 162 (279)
|+++++.++.+|+++++++++++.+++++++++|.|||++++|||+|++|||||| +.||+||.+||+|++.+++++|+|
T Consensus 83 l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG 162 (248)
T 1iru_D 83 VINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIG 162 (248)
T ss_dssp HHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEES
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999 789999999999999999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhccc
Q 023620 163 SRSQAAKTYLERRFENFSES--TREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAG 239 (279)
Q Consensus 163 ~gs~~a~~~Le~~~~~~~~~--s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~ 239 (279)
+++++++++||++|+ ++| +++||++++++||..+.+ .++++++|++|+++|+|+++++++|+++++.+...+
T Consensus 163 ~gs~~a~~~Le~~~~--~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g~~~~l~~~ei~~~~~~~~~~~ 236 (248)
T 1iru_D 163 RGAKSVREFLEKNYT--DEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEK 236 (248)
T ss_dssp TTHHHHHHHHTTTCC--SSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSSCEECCCHHHHHHHTTTTTTTT
T ss_pred CCcHHHHHHHHHhhc--ccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCCcEEECCHHHHHHHHHHHHhcc
Confidence 999999999999999 899 999999999999999876 578999999999998899999999999999886544
No 15
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=1.7e-62 Score=435.25 Aligned_cols=232 Identities=35% Similarity=0.566 Sum_probs=223.0
Q ss_pred CCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhHHHHH
Q 023620 7 DTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTADGRVL 84 (279)
Q Consensus 7 d~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l 84 (279)
|+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|++.|
T Consensus 1 d~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l 80 (242)
T 1ryp_E 1 DRGVSTFSPEGRLFQVEYSLEAIKLGSTAIGIATKEGVVLGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSM 80 (242)
T ss_dssp CCCTTCBCTTSCBHHHHHHHHHHTTSCCEEEEECSSCEEEEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHH
T ss_pred CCCCceECCCCcChHHHhHHHHHHcCCCEEEEEECCEEEEEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHH
Confidence 78999999999999999999999999999999999999999999999886 5678999999999999999999999999
Q ss_pred HHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccC------CCCcceeeEEEEEe-CCCcEEEEEcCCceEEeec
Q 023620 85 SRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSW------KRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQ 157 (279)
Q Consensus 85 ~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~------~RP~gv~~lvaG~D-~~Gp~Ly~iDp~G~~~~~~ 157 (279)
+++++.++.+|+++++.+++++.+++++++++|.|||+.+ .|||+|++|||||| ++||+||++||+|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~ 160 (242)
T 1ryp_E 81 IEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYN 160 (242)
T ss_dssp HHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBS
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccC
Confidence 9999999999999999999999999999999999999888 99999999999999 6789999999999999999
Q ss_pred eEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhc
Q 023620 158 AFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 158 ~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
++|+|+++++++++||++|+ ++|+++||++++++||..+.++ ..++++++|++|++++.|+++++++|+++++.+.+
T Consensus 161 ~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~ 237 (242)
T 1ryp_E 161 AKAIGSGSEGAQAELLNEWH--SSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQDGFKIYDNEKTAELIKELKE 237 (242)
T ss_dssp EEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhh
Confidence 99999999999999999999 8999999999999999999998 78899999999999988999999999999999976
Q ss_pred ccCC
Q 023620 238 AGTE 241 (279)
Q Consensus 238 ~~~~ 241 (279)
.++.
T Consensus 238 ~~~~ 241 (242)
T 1ryp_E 238 KEAA 241 (242)
T ss_dssp HHTT
T ss_pred hhcc
Confidence 6543
No 16
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=7e-62 Score=441.13 Aligned_cols=236 Identities=31% Similarity=0.465 Sum_probs=221.2
Q ss_pred CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 3 ~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
.++||+++|+|||+|||||||||++||++|+|+|||+++||||||+|+|.++++ .+..+|||+|++||+|+++|+.+|
T Consensus 5 ~~~yd~~~t~fSP~Grl~QvEYA~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD 84 (288)
T 3nzj_F 5 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 84 (288)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHH
T ss_pred cCCccCCcccCCCCCchHHHHHHHHHHhcCCcEEEEEECCEEEEEEcCCcccCCccccccceEEEEcCCEEEEecCcHHH
Confidence 678999999999999999999999999999999999999999999999999886 356799999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.|+++++.++.+|+++++++++++.++++|++++|.||+++++|||+|++||||||++||+||++||+|++.+++++|
T Consensus 85 ~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 164 (288)
T 3nzj_F 85 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 164 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEec---CCCEEEeCHHHHHHHHHH
Q 023620 161 IGSRSQAAKTYLERR---FENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGA---GEPFHILDQETVQKLIDS 234 (279)
Q Consensus 161 iG~gs~~a~~~Le~~---~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k---~~~f~~l~~~ei~~~l~~ 234 (279)
+|++++.++++||++ |+ ++|+++||++++++||..+.+++..+++.++|+||++ ++.+++++.+.+++....
T Consensus 165 iGsgs~~a~~~Lek~~~~~~--~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~~~ 242 (288)
T 3nzj_F 165 TGKGRQSAKAELEKLVDHHP--EGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDF 242 (288)
T ss_dssp ESTTHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHHHHHH
T ss_pred EcCcHHHHHHHHHHhccccC--CCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHHHHHH
Confidence 999999999999999 77 8999999999999999999999988999999999998 345677888777776665
Q ss_pred hhcccC
Q 023620 235 FEIAGT 240 (279)
Q Consensus 235 ~~~~~~ 240 (279)
.+..-+
T Consensus 243 ~~~~~~ 248 (288)
T 3nzj_F 243 AQKEIN 248 (288)
T ss_dssp HHHHTC
T ss_pred HHHHhh
Confidence 554433
No 17
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=3.5e-61 Score=428.93 Aligned_cols=230 Identities=37% Similarity=0.576 Sum_probs=218.6
Q ss_pred CCCCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecch
Q 023620 1 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLT 78 (279)
Q Consensus 1 m~~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~ 78 (279)
|.+ +||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .++.+|||+|++|++|+++|+.
T Consensus 1 ~~~-~yd~~~t~fsp~Grl~QvEyA~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~ 79 (250)
T 1ryp_B 1 MTD-RYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMG 79 (250)
T ss_dssp CCC-CCCSBSSCBCTTSCBHHHHHHHHHHHTSCCEEEEEETTEEEEEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECH
T ss_pred CCC-cccCCceeECCCCccHHHHhHHHHHHcCCcEEEEEECCEEEEEEeccCCCccccCcccCceEEECCCEEEEeeeCH
Confidence 554 9999999999999999999999999999999999999999999999998766 5778999999999999999999
Q ss_pred hHHHHHHHHHHHHHHh-hhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEee
Q 023620 79 ADGRVLSRYMRSECIN-YSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEY 156 (279)
Q Consensus 79 aD~~~l~~~lr~~~~~-y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~ 156 (279)
+|++.|.++++.+++. |++.++.+++++.+++.+++++|.++++.+.|||+|++||||||+ .||+||.+||+|++.++
T Consensus 80 aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~ 159 (250)
T 1ryp_B 80 PDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPW 159 (250)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEee
Confidence 9999999999999999 999999999999999999999999999888999999999999997 68999999999999999
Q ss_pred ceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecC---------------CCEE
Q 023620 157 QAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAG---------------EPFH 221 (279)
Q Consensus 157 ~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~---------------~~f~ 221 (279)
+++|+|+++++++++||++|+ ++|+++||++++++||+.+.+++ +++++++|++|+++ .+|+
T Consensus 160 ~~~aiGsgs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~-~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~ 236 (250)
T 1ryp_B 160 KATAIGKGSVAAKTFLEKRWN--DELELEDAIHIALLTLKESVEGE-FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFR 236 (250)
T ss_dssp SEEEESTTHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHHHHCCSC-CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEE
T ss_pred ceeEecCccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHhccc-cCCCCEEEEEEEccccccccccccccCCCCCeE
Confidence 999999999999999999999 89999999999999999999874 68999999999986 2499
Q ss_pred EeCHHHHHHHHHH
Q 023620 222 ILDQETVQKLIDS 234 (279)
Q Consensus 222 ~l~~~ei~~~l~~ 234 (279)
+|+++||+++|+.
T Consensus 237 ~l~~~ei~~~l~~ 249 (250)
T 1ryp_B 237 KLTSQEINDRLEA 249 (250)
T ss_dssp ECCHHHHHHHHTT
T ss_pred ECCHHHHHHHHHh
Confidence 9999999999864
No 18
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=1e-60 Score=424.62 Aligned_cols=230 Identities=31% Similarity=0.479 Sum_probs=215.6
Q ss_pred CCCCCCcceeeCCCCCcchhchHHHHhccCCeEEEEEeCCEEEEEEecCCCccc--ccccccEEEEcCcEEEEEecchhH
Q 023620 3 RNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL--SSHQKKIFKVDDHIGVAIAGLTAD 80 (279)
Q Consensus 3 ~~~yd~~~t~fsp~Grl~QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l--~~~~~KI~~I~~~i~~~~sG~~aD 80 (279)
.++||+++|+|||+|||||||||++|+++|+|+|||+++||||||+|+|.++++ .+..+|||+|++|++|+++|+.+|
T Consensus 1 ~~~yd~~~t~fsp~Grl~QvEya~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD 80 (244)
T 1ryp_G 1 GTGYDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPD 80 (244)
T ss_dssp CCCTTSSTTCCCTTSCCHHHHHHHHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHH
T ss_pred CCCccCCcccCCcCCchHHHHhHHHHHHCCCCEEEEEECCEEEEEEecccCCCCccccccCceEEecCCEEEEEcccHHH
Confidence 368999999999999999999999999999999999999999999999999886 344599999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEE
Q 023620 81 GRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFA 160 (279)
Q Consensus 81 ~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~a 160 (279)
++.|+++++.++.+|+++++++++++.+++++++++|.||++++.|||+|++||||||++||+||++||+|++.+++++|
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~a 160 (244)
T 1ryp_G 81 GRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAA 160 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEE
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEE
Confidence 99999999999999999999999999999999999999999988999999999999999899999999999999999999
Q ss_pred ecCCcHHHHHHHHHh---hcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEec---CCCEEEeCHHHHHHHHHH
Q 023620 161 IGSRSQAAKTYLERR---FENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGA---GEPFHILDQETVQKLIDS 234 (279)
Q Consensus 161 iG~gs~~a~~~Le~~---~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k---~~~f~~l~~~ei~~~l~~ 234 (279)
+|+++++++++||+. |+ ++||++||++++++||+.+.++|..++++++|++|++ +| ++++.++++-+...+
T Consensus 161 iG~gs~~a~~~Le~~~~~~~--~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~~~~~~~~~~~~~~~ 237 (244)
T 1ryp_G 161 TGKGRQSAKAELEKLVDHHP--EGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-LHKFVKGDLLQEAID 237 (244)
T ss_dssp ESTTHHHHHHHHHHHHHHCT--TCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-SEEECCTHHHHHHHH
T ss_pred ECCChHHHHHHHHHhHhhcC--CCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-eeeeChHHHHHHHHH
Confidence 999999999999997 87 7999999999999999999999999999999999998 55 777777666555544
Q ss_pred h
Q 023620 235 F 235 (279)
Q Consensus 235 ~ 235 (279)
.
T Consensus 238 ~ 238 (244)
T 1ryp_G 238 F 238 (244)
T ss_dssp H
T ss_pred H
Confidence 4
No 19
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.6e-54 Score=386.57 Aligned_cols=226 Identities=19% Similarity=0.248 Sum_probs=198.3
Q ss_pred eeeCCCCCcc-hhchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhHHHHHHHHHH
Q 023620 11 TTWSPAGRLF-QVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMR 89 (279)
Q Consensus 11 t~fsp~Grl~-QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr 89 (279)
..|||+|++. |||||++++++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|+++++
T Consensus 5 ~~~sPe~~~~~qvEYA~~av~~Gtt~vgi~~~dgVVlaaD~r-----s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~ 79 (259)
T 1q5q_A 5 YYASAEQIMRDRSELARKGIARGRSVVVLTFRDGVLFVAENP-----STALHKVSELYDRLGFAAVGKYNEFENLRRAGI 79 (259)
T ss_dssp ----CHHHHHHHHHHHHHHHHTSCCEEEEECSSEEEEEECCS-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHhcCCcEEEEEeCCEEEEEEecC-----CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHH
Confidence 4689999996 9999999999999999999999999999999 367899999999999999999999999999999
Q ss_pred HHHHhhhcccC-CCCCHHHHHHHHHH-HHHHhhhccCCCCcceeeEEEEEe----CCCcEEEEEcCCceEE-eeceEEec
Q 023620 90 SECINYSYTYE-SPLPVGRLVVQLAD-KAQVCTQRSWKRPYGVGLLVAGLD----EKGAHLYYNCPSGNYF-EYQAFAIG 162 (279)
Q Consensus 90 ~~~~~y~~~~~-~~i~~~~la~~l~~-~~q~~t~~~~~RP~gv~~lvaG~D----~~Gp~Ly~iDp~G~~~-~~~~~aiG 162 (279)
.+++.|++.++ .+++++.+++++++ +.|.|+ ++.|||+|++|||||| +.||+||++||+|++. .++++|+|
T Consensus 80 ~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt--~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG 157 (259)
T 1q5q_A 80 VHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT--EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMG 157 (259)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH--HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEES
T ss_pred HHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc--cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEEC
Confidence 99999999888 49999999999999 777787 4689999999999999 6899999999999999 88999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh-----ccCccCCCcEEEEEEecCC---CEEEeCHHHHHHHHHH
Q 023620 163 SRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL-----QGETLKSSICTVAVVGAGE---PFHILDQETVQKLIDS 234 (279)
Q Consensus 163 ~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~-----~~d~~~~~~i~I~ii~k~~---~f~~l~~~ei~~~l~~ 234 (279)
++++.++++||++|+ ++|+++||++++++||..++ ++|. ++++++|++|++++ +|++|++++|+.++..
T Consensus 158 ~gs~~a~~~Le~~~~--~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~ 234 (259)
T 1q5q_A 158 GTTEPIATAMRESYR--ADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPA 234 (259)
T ss_dssp SSHHHHHHHHHHHCC--TTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCC
T ss_pred CChHHHHHHHHhhcc--CCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHH
Confidence 999999999999999 89999999999999999998 8888 89999999999986 7999999999999998
Q ss_pred hhcccCCCCCCC
Q 023620 235 FEIAGTEEGPAA 246 (279)
Q Consensus 235 ~~~~~~~~~~~~ 246 (279)
+...+.++.++.
T Consensus 235 ~~~~~~~~~~~~ 246 (259)
T 1q5q_A 235 EPAAASESAPEP 246 (259)
T ss_dssp C-----------
T ss_pred hhhccccccccc
Confidence 866665444333
No 20
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=3.9e-50 Score=357.12 Aligned_cols=205 Identities=23% Similarity=0.279 Sum_probs=188.8
Q ss_pred hhchHHHHhccCCeEEEEEeCCEEEEEEecCCCcccccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccC
Q 023620 21 QVEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYE 100 (279)
Q Consensus 21 QvEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~l~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~ 100 (279)
++|||+|||++|+|+|||+++||||||+|+| +++.+|||+|++||+|+++|+.+|++.|.+.++.+++.|++.++
T Consensus 16 r~EYA~~av~~GtT~vgi~~kdgVVlaadkr-----~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~ 90 (248)
T 3mi0_A 16 RSELARKGIARAKSVVALAYAGGVLFVAENP-----SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYD 90 (248)
T ss_dssp HHHHHHHHHHTSCCEEEEEETTEEEEEEECC-----CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHhCCCcEEEEEeCCEEEEEEeCC-----CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999 45789999999999999999999999999999999999999999
Q ss_pred -CCCCHHHHHHHHH-HHHHHhhhccCCCCcceeeEEEEEeC----CCcEEEEEcCCceEEe-eceEEecCCcHHHHHHHH
Q 023620 101 -SPLPVGRLVVQLA-DKAQVCTQRSWKRPYGVGLLVAGLDE----KGAHLYYNCPSGNYFE-YQAFAIGSRSQAAKTYLE 173 (279)
Q Consensus 101 -~~i~~~~la~~l~-~~~q~~t~~~~~RP~gv~~lvaG~D~----~Gp~Ly~iDp~G~~~~-~~~~aiG~gs~~a~~~Le 173 (279)
.+++++.|+++++ .+.|.||| ++|||+|++||||||+ .||+||++||+|++.. ++++|+|++++.++++||
T Consensus 91 ~~~i~v~~la~~l~~~l~q~yt~--~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le 168 (248)
T 3mi0_A 91 RRDVTGRQLANVYAQTLGTIFTE--QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALK 168 (248)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHH--SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhcc--CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHH
Confidence 8999999999999 77888987 6899999999999998 7899999999999995 999999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHHh-------ccCccCCCcEEEEEEecCCC---EEEeCHHHHHHHHHHh
Q 023620 174 RRFENFSESTREDLIKDALMAIRETL-------QGETLKSSICTVAVVGAGEP---FHILDQETVQKLIDSF 235 (279)
Q Consensus 174 ~~~~~~~~~s~eeai~~a~~al~~~~-------~~d~~~~~~i~I~ii~k~~~---f~~l~~~ei~~~l~~~ 235 (279)
++|+ ++|+++||++++++||+.+. ++ .+++++++|++|+++|+ |++|+++||+.+|+.+
T Consensus 169 ~~y~--~~mt~eeai~la~~aL~~~~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~ 237 (248)
T 3mi0_A 169 ESYA--ENASLTDALRIAVAALRAGSADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQ 237 (248)
T ss_dssp HHCC--TTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC---
T ss_pred hhcC--CCCCHHHHHHHHHHHHHHHHhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHc
Confidence 9999 89999999999999999998 44 57889999999999864 9999999999999876
No 21
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2e-48 Score=340.33 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=189.5
Q ss_pred CCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHH
Q 023620 32 GSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRL 108 (279)
Q Consensus 32 G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~l 108 (279)
|+|+|||+++||||||+|+|.+++ + .++.+|||+|++||+|+++|+.+|++.|+++++.+++.|+++++.+++++.+
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~l 80 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLAC 80 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHH
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 799999999999999999999976 3 5788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeec-eEEecCCcHHHHHHHHHhhcCCCCCCHHH
Q 023620 109 VVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQ-AFAIGSRSQAAKTYLERRFENFSESTRED 186 (279)
Q Consensus 109 a~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~~s~ee 186 (279)
++++++++|.+ ..|||+|++||||||+ .||+||++||+|++.+++ ++|+|+++++++++||++|+ ++|+++|
T Consensus 81 a~~l~~~~~~~----~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ms~ee 154 (219)
T 3h4p_a 81 ATLLSNILHSS----RMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYD--RDMSVEE 154 (219)
T ss_dssp HHHHHHHHHHT----TTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCC--TTCCHHH
T ss_pred HHHHHHHHHHh----cCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcC--CCCCHHH
Confidence 99999999765 3689999999999998 789999999999999999 99999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcccCCCCC
Q 023620 187 LIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAGTEEGP 244 (279)
Q Consensus 187 ai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~~~~~ 244 (279)
|++++++||..+.++|..++++++|++|+++| |++|+++||+++|+.++..++.+.+
T Consensus 155 a~~la~~al~~~~~rd~~sg~~i~v~vi~~~g-~~~l~~~ei~~~l~~~~~~~~~~~~ 211 (219)
T 3h4p_a 155 GIKLALNALKSAMERDTFSGNGISLAVITKDG-VKIFEDEEIEKILDSMKAKPKKKTT 211 (219)
T ss_dssp HHHHHHHHHHHHHTSCSSCCSCCCEEEEETTE-EEECCHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHHhhcCCCCCcEEEEEEeCCC-eEEcCHHHHHHHHHHhhcccccccc
Confidence 99999999999999999999999999999985 9999999999999999888776653
No 22
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=2.1e-47 Score=333.32 Aligned_cols=204 Identities=24% Similarity=0.397 Sum_probs=188.3
Q ss_pred HHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCC
Q 023620 27 EAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPL 103 (279)
Q Consensus 27 ~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i 103 (279)
.++++|+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++++++++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~ 82 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNM 82 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 57899999999999999999999999974 4 57889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCC
Q 023620 104 PVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSEST 183 (279)
Q Consensus 104 ~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s 183 (279)
|++.+++++++.+|.+ ..|||+|++|||||| +||+||++||+|++.+++++|+|+|+++++++||+.|+ ++||
T Consensus 83 ~v~~la~~l~~~~~~~----r~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s 155 (217)
T 1yar_H 83 PIEAVATLLSNMLNQV----KYMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYS--EKMT 155 (217)
T ss_dssp CHHHHHHHHHHHHHHT----TTSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCC--TTCC
T ss_pred CHHHHHHHHHHHHHhc----CCCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcc--cCCC
Confidence 9999999999999653 278999999999999 89999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhc
Q 023620 184 REDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 184 ~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
++||++++++||+.+.++|..++++++|++|+++.+|++++++||+++++.++.
T Consensus 156 ~eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g~~~~~~~ei~~~~~~~~~ 209 (217)
T 1yar_H 156 VDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDGYVQLPTDQIESRIRKLGL 209 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTEEEECCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCEEEcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999435999999999999998764
No 23
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=1.1e-46 Score=324.90 Aligned_cols=197 Identities=26% Similarity=0.379 Sum_probs=187.5
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|+++++.+++.|++++++++|++.++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a 80 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIA 80 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 68999999999999999999974 4 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeec-eEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQ-AFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++.+|.+ ..|||+|++||||||++||+||++||+|++.+++ ++|+|+++++++++||++|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~----r~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea~ 154 (202)
T 1j2q_H 81 TLTSNLLNSY----RYFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFT--PEIGVDEAV 154 (202)
T ss_dssp HHHHHHHHHT----TTSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhh----CCCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcC--CCcCHHHHH
Confidence 9999999653 3789999999999999899999999999999999 99999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhh
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFE 236 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~ 236 (279)
+++++||..+.++|..++++++|++|+++| |+++++++|+++++.++
T Consensus 155 ~la~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 155 ELAVRAIYSAMKRDSASGDGIDVVKITEDE-FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHHTTCTTSCSCEEEEEECSSC-EEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-eEEeCHHHHHHHHHHhh
Confidence 999999999999999999999999999985 99999999999998764
No 24
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=5e-47 Score=343.54 Aligned_cols=222 Identities=15% Similarity=0.210 Sum_probs=192.2
Q ss_pred eCCCCCcchh------chHHHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHH
Q 023620 13 WSPAGRLFQV------EYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRV 83 (279)
Q Consensus 13 fsp~Grl~Qv------EYa~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~ 83 (279)
-||+.-|-+. -++..++++|+|+|||+++||||||+|+|.+++ + +++.+|||+|++|++|+++|+.+|++.
T Consensus 50 ~~p~~~~~~~~~~~~~~~~~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~ 129 (287)
T 3nzj_K 50 ASPQQFLRAHTDDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQF 129 (287)
T ss_dssp --------------------------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHH
T ss_pred CCHHHHHHHhcccccccchhhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHH
Confidence 3555555544 278899999999999999999999999999975 3 578899999999999999999999999
Q ss_pred HHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEe-CCCcEEEEEcCCceEEeeceEEec
Q 023620 84 LSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIG 162 (279)
Q Consensus 84 l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D-~~Gp~Ly~iDp~G~~~~~~~~aiG 162 (279)
|.++++.+++.|+++++++++++.+++++++++|.|++ +||++++|||||| +.||+||++||+|++.+++++|+|
T Consensus 130 l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~----~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiG 205 (287)
T 3nzj_K 130 WETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG----AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVG 205 (287)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT----SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEES
T ss_pred HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC----CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEe
Confidence 99999999999999999999999999999999987765 3999999999999 578999999999999999999999
Q ss_pred CCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcccCC
Q 023620 163 SRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAGTE 241 (279)
Q Consensus 163 ~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~~ 241 (279)
+|+++++++||++|+ ++|+++||++++++||..+.+||..++++++|++|+++| |+++++++|++++..+++.+.+
T Consensus 206 sgs~~a~~~Le~~y~--~dms~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg-~~~l~~~ev~~~l~~~~e~~~~ 281 (287)
T 3nzj_K 206 SGQTFAYGVLDSNYK--WDLSVEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGS 281 (287)
T ss_dssp TTHHHHHHHHHTSCC--TTCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHCC
T ss_pred cchHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC-EEEeCHHHHHHHHHHHHHhhcc
Confidence 999999999999999 899999999999999999999999999999999999996 9999999999999999877543
No 25
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.2e-46 Score=342.03 Aligned_cols=214 Identities=20% Similarity=0.225 Sum_probs=195.9
Q ss_pred HHHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCC
Q 023620 25 AMEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYES 101 (279)
Q Consensus 25 a~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~ 101 (279)
|+||+++|+|+|||+++||||||+|+|.+++ + +++.+|||+|++|++|+++|+.+|++.|+++++.+++.|+++++.
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~ 137 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGV 137 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCC
Confidence 8999999999999999999999999999974 4 578899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCC-C-----cEEEEEcCCceEEee--ceEEecCCcHHHHHHHH
Q 023620 102 PLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-G-----AHLYYNCPSGNYFEY--QAFAIGSRSQAAKTYLE 173 (279)
Q Consensus 102 ~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~-G-----p~Ly~iDp~G~~~~~--~~~aiG~gs~~a~~~Le 173 (279)
+++++.++++|++++|.++++. .|||+|++||||||++ | |+||++||+|++.++ +++|+|+|+++++++||
T Consensus 138 ~isv~~la~~la~~l~~~~~~~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le 216 (294)
T 1q5r_H 138 PLTFDGKANRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALK 216 (294)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhh-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHH
Confidence 9999999999999999998865 8999999999999975 6 999999999999999 89999999999999999
Q ss_pred HhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCc--E-----EEEEEecCCCEEEeCHHHHHHHHHHhhcccCCC
Q 023620 174 RRFENFSESTREDLIKDALMAIRETLQGETLKSSI--C-----TVAVVGAGEPFHILDQETVQKLIDSFEIAGTEE 242 (279)
Q Consensus 174 ~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~--i-----~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~~~ 242 (279)
++|+ ++|+++||++++++||+.+.++|..++.. + +|++|+++| |+++++++|++++..+.+.+.+.
T Consensus 217 ~~y~--~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~~~l~~~ei~~~l~~i~~~~~~~ 289 (294)
T 1q5r_H 217 KIYS--PDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTEQ 289 (294)
T ss_dssp HHCC--SSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHCC-----
T ss_pred Hhcc--CCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-EEEcCHHHHHHHHHHHHHHhhhC
Confidence 9999 89999999999999999999999876543 6 999999986 99999999999999996655443
No 26
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=2.4e-46 Score=323.35 Aligned_cols=199 Identities=19% Similarity=0.281 Sum_probs=188.5
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|.++++.+++.|+++++.+++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAAS 80 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 58999999999999999999974 4 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~ 189 (279)
+++++++|.+++ +||+|++||||||++||+||++||+|++.+++++|+|+|+++++++||++|+ ++||++||++
T Consensus 81 ~~l~~~~~~~r~----~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~s~eea~~ 154 (204)
T 1iru_L 81 KLLANMVYQYKG----MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYS--YDLEVEQAYD 154 (204)
T ss_dssp HHHHHHHHTTTT----SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCC--TTCCHHHHHH
T ss_pred HHHHHHHHHhCC----CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCC--CCCCHHHHHH
Confidence 999999987653 4899999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcc
Q 023620 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIA 238 (279)
Q Consensus 190 ~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~ 238 (279)
++++||+.+.+||..++++++|++|++++ |++++++||+++++.++..
T Consensus 155 l~~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~l~~~ei~~~~~~~~~~ 202 (204)
T 1iru_L 155 LARRAIYQATYRDAYSGGAVNLYHVREDG-WIRVSSDNVADLHEKYSGS 202 (204)
T ss_dssp HHHHHHHHHHHHBTTCCSEEEEEEECSSC-EEEEEEEEHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhCccCCCceEEEEEeCCc-eEEeCHHHHHHHHHHhccC
Confidence 99999999999999999999999999975 9999999999999998553
No 27
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=1e-46 Score=329.10 Aligned_cols=204 Identities=15% Similarity=0.129 Sum_probs=191.0
Q ss_pred HHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhc-ccCC
Q 023620 26 MEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSY-TYES 101 (279)
Q Consensus 26 ~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~-~~~~ 101 (279)
++++++|+|+|||+++||||||+|+|.+++ + +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++ .++.
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGH 81 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 368899999999999999999999999874 3 57889999999999999999999999999999999999998 9999
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCC
Q 023620 102 PLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE 181 (279)
Q Consensus 102 ~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ 181 (279)
+++++.+++++++.+ |+++.+.|||+|++||||||+.||+||++||+|++.+++++|+|+|+++++++||++|+.+++
T Consensus 82 ~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ 159 (219)
T 1iru_N 82 SYSPRAIHSWLTRAM--YSRRSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPV 159 (219)
T ss_dssp CCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSC
T ss_pred CCCHHHHHHHHHHHH--HHhcccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCC
Confidence 999999999999998 567778999999999999998899999999999999999999999999999999999992229
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHH
Q 023620 182 STREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLI 232 (279)
Q Consensus 182 ~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l 232 (279)
||++||++++++||..+.++|..++++++|++|+++| |+++++++|+..+
T Consensus 160 mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~~~~i~~~~ 209 (219)
T 1iru_N 160 LSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-VEIEGPLSTETNW 209 (219)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-EEEcCCeeccchh
Confidence 9999999999999999999999999999999999986 9999999887653
No 28
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.3e-46 Score=338.93 Aligned_cols=231 Identities=16% Similarity=0.158 Sum_probs=175.1
Q ss_pred CCCCCcceeeCCCCCc-----ch--hchHHHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEE
Q 023620 4 NQYDTDVTTWSPAGRL-----FQ--VEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVA 73 (279)
Q Consensus 4 ~~yd~~~t~fsp~Grl-----~Q--vEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~ 73 (279)
++|+.-+...+|+.-- +| +|||++ +++|+|+|||+++||||||+|+|.+++ + +++.+|||+|++|++|+
T Consensus 23 ~~f~~~~~~~~~~~l~~~~~~~~~~~~ya~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~ 101 (291)
T 2jay_A 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATG 101 (291)
T ss_dssp ------------------------------------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEE
T ss_pred ccHHHHhhhcChhhccccccccCcCcccccc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEE
Confidence 3566666667665422 23 799999 999999999999999999999999986 3 56889999999999999
Q ss_pred EecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCC-C-----cEEEEE
Q 023620 74 IAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-G-----AHLYYN 147 (279)
Q Consensus 74 ~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~-G-----p~Ly~i 147 (279)
++|+.+|++.|+++++.+++.|++.++.+++++.+++.+++++|.+++ ..+|||+|++||||||++ + |+||++
T Consensus 102 ~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~-~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~i 180 (291)
T 2jay_A 102 IAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA-AAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180 (291)
T ss_dssp EESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-HHHHTCCCEEEEEEECTTCSCSTTCEEEEEE
T ss_pred EcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-hhccccceeEEEEEEeCCCCcCCCCCEEEEE
Confidence 999999999999999999999999999999999999999999988865 457899999999999975 4 899999
Q ss_pred cCCceEE--eeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHhccCccCCCc--E-----EEEEEecCC
Q 023620 148 CPSGNYF--EYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETLQGETLKSSI--C-----TVAVVGAGE 218 (279)
Q Consensus 148 Dp~G~~~--~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~--i-----~I~ii~k~~ 218 (279)
||+|++. +++++|+|+|+++++++||++|+ ++|+++||++++++||+.+.++|..+++. + +|++|++++
T Consensus 181 Dp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg 258 (291)
T 2jay_A 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYS--QVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG 258 (291)
T ss_dssp CTTSCEEECSSSEEEESTTHHHHHHHHHHHGG--GCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE
T ss_pred CCCCcEEecCCCEEEEecCHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC
Confidence 9999999 89999999999999999999999 89999999999999999999999876653 2 699999985
Q ss_pred CEEEeCHHHHHHHHHHhhccc
Q 023620 219 PFHILDQETVQKLIDSFEIAG 239 (279)
Q Consensus 219 ~f~~l~~~ei~~~l~~~~~~~ 239 (279)
|+++++++|+++++.+...+
T Consensus 259 -~~~l~~~ei~~~~~~~~~~~ 278 (291)
T 2jay_A 259 -AVDVPESRIAELARAIIESR 278 (291)
T ss_dssp -EEECCHHHHHHHHHHC----
T ss_pred -eEEcCHHHHHHHHHHHHHhh
Confidence 99999999999999986543
No 29
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=7.6e-46 Score=322.12 Aligned_cols=203 Identities=14% Similarity=0.216 Sum_probs=192.4
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|.++++.+++.|+++++.+++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAAS 80 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999999999999999999974 4 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEe-CCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLD-EKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D-~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++++|.|+++ ||++++|||||| +.||+||++||+|++.+++++|+|+|+++++++||++|+ ++||++||+
T Consensus 81 ~~l~~~~~~~~~~----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~ 154 (212)
T 1ryp_L 81 KILSNLVYQYKGA----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYK--WDLSVEDAL 154 (212)
T ss_dssp HHHHHHHHHTTTS----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhhCCC----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCC--CCCCHHHHH
Confidence 9999999988763 899999999999 578999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHHHHHhhcccCCC
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKLIDSFEIAGTEE 242 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~~~ 242 (279)
+++++||+.+.+||..++++++|++|++++ |+++++++|++++..+.+.++.+
T Consensus 155 ~la~~al~~~~~rd~~s~~~i~v~vi~~~g-~~~~~~~ei~~~~~~~~~~~~~~ 207 (212)
T 1ryp_L 155 YLGKRSILAAAHRDAYSGGSVNLYHVTEDG-WIYHGNHDVGELFWKVKEEEGSF 207 (212)
T ss_dssp HHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEEEEHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCc-eEEECHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999986 99999999999999997766654
No 30
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.7e-45 Score=324.89 Aligned_cols=208 Identities=21% Similarity=0.235 Sum_probs=193.1
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + +++.+|||+|++|++|+++|+.+|++.|+++++.++..|+++++.+++++.++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKA 80 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHH
Confidence 68999999999999999999974 4 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCC-C-----cEEEEEcCCceEEee--ceEEecCCcHHHHHHHHHhhcCCCC
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-G-----AHLYYNCPSGNYFEY--QAFAIGSRSQAAKTYLERRFENFSE 181 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~-G-----p~Ly~iDp~G~~~~~--~~~aiG~gs~~a~~~Le~~~~~~~~ 181 (279)
+.|++++|.++++. .|||+|++||||||++ | |+||++||+|++.++ +++|+|+++++++++||+.|+ ++
T Consensus 81 ~~l~~~~~~~~~~~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 157 (235)
T 1q5q_H 81 NRLASMVRGNLGAA-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYS--PD 157 (235)
T ss_dssp HHHHHHHHTTHHHH-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCC--TT
T ss_pred HHHHHHHHHHHHhh-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcC--CC
Confidence 99999999988765 8999999999999976 7 999999999999999 999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCc--E-----EEEEEecCCCEEEeCHHHHHHHHHHhhcccCCCCC
Q 023620 182 STREDLIKDALMAIRETLQGETLKSSI--C-----TVAVVGAGEPFHILDQETVQKLIDSFEIAGTEEGP 244 (279)
Q Consensus 182 ~s~eeai~~a~~al~~~~~~d~~~~~~--i-----~I~ii~k~~~f~~l~~~ei~~~l~~~~~~~~~~~~ 244 (279)
|+++||++++++||..+.++|..++.. + +|++|+++| |++++++++++++..+...+++++.
T Consensus 158 ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g-~~~l~~~ei~~~~~~~~~~~~~~~~ 226 (235)
T 1q5q_H 158 SDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-AVHVSEETTSELARRIVAERTEQGG 226 (235)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-EEECCHHHHHHHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC-eEEeCHHHHHHHHHHHHHHHhhCCC
Confidence 999999999999999999999876642 3 999999986 9999999999999999887776654
No 31
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2.2e-46 Score=330.06 Aligned_cols=202 Identities=18% Similarity=0.247 Sum_probs=191.2
Q ss_pred HHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhc-----
Q 023620 26 MEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSY----- 97 (279)
Q Consensus 26 ~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~----- 97 (279)
++++++|+|+|||+++||||||+|+|.+++ + +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~ 81 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLA 81 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchh
Confidence 368899999999999999999999999875 3 57889999999999999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCC-CcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhh
Q 023620 98 TYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRF 176 (279)
Q Consensus 98 ~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 176 (279)
+++.+++++.+++++++.+ |+++.+.|||+|++||||||+. ||+||++||+|++.+++++|+|+++++++++||++|
T Consensus 82 ~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~ 159 (233)
T 1ryp_N 82 DAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVV 159 (233)
T ss_dssp TTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTC
T ss_pred hcCCCCCHHHHHHHHHHHH--HHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhh
Confidence 8999999999999999998 6677788999999999999975 899999999999999999999999999999999999
Q ss_pred cCCC-----CCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHH
Q 023620 177 ENFS-----ESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKL 231 (279)
Q Consensus 177 ~~~~-----~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~ 231 (279)
+ + +||++||++++++||+.+.++|..++++++|++|+++++|+++++++|+++
T Consensus 160 ~--~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 160 D--RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 217 (233)
T ss_dssp S--SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCSC
T ss_pred c--cccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCCeEEcChHhcccc
Confidence 8 6 999999999999999999999999999999999999845999999999877
No 32
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=1.1e-45 Score=319.45 Aligned_cols=194 Identities=15% Similarity=0.197 Sum_probs=184.8
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAA 80 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999987 4 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++++|.|++ ||++++||||||+ +||+||.+||+|++.+++++++|+|+++++++||++|+ ++|+++||+
T Consensus 81 ~~l~~~~~~~~~-----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~--~~~s~eea~ 153 (205)
T 1iru_H 81 SLFKEMCYRYRE-----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYR--EGMTKEECL 153 (205)
T ss_dssp HHHHHHHHHTTT-----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHHhcCc-----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcC--CCCCHHHHH
Confidence 999999988764 9999999999997 78999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCCC-EEEeCHHHHHHHHH
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGEP-FHILDQETVQKLID 233 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~-f~~l~~~ei~~~l~ 233 (279)
+++++||+.+.++|..++++++|++|++++. |++++++||+++++
T Consensus 154 ~l~~~al~~~~~~d~~s~~~i~v~vi~~~g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 154 QFTANALALAMERDGSSGGVIRLAAIAESGVERQVLLGDQIPKFAV 199 (205)
T ss_dssp HHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEEEEECGGGSCCCCC
T ss_pred HHHHHHHHHHHHhccccCCcEEEEEEeCCCeEEEEeChHHhhHHHh
Confidence 9999999999999999999999999999975 78999999988765
No 33
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=1.8e-44 Score=322.87 Aligned_cols=197 Identities=23% Similarity=0.237 Sum_probs=178.1
Q ss_pred HHHHhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCC
Q 023620 25 AMEAVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYES 101 (279)
Q Consensus 25 a~~av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~ 101 (279)
.+||+++|+|+|||+++||||||+|+|.+++. .++.+|||+|++||+|+++|+.+|++.|.++++.+++.|++.+++
T Consensus 22 ~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~ 101 (261)
T 3nzj_H 22 QPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSR 101 (261)
T ss_dssp --------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 47999999999999999999999999999753 578899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCC
Q 023620 102 PLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE 181 (279)
Q Consensus 102 ~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ 181 (279)
++++..+++++++.++.| .|||++++||||||++||+||++||+|++.+++++|+|+|++.++++||++|+ ++
T Consensus 102 ~~~v~~~a~~l~~~l~~~-----~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 174 (261)
T 3nzj_H 102 EPRVVSALQMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QD 174 (261)
T ss_dssp CCCHHHHHHHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SS
T ss_pred CCCHHHHHHHHHHHHHHh-----cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhc--cC
Confidence 999999999999987433 47999999999999999999999999999999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHH
Q 023620 182 STREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETV 228 (279)
Q Consensus 182 ~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei 228 (279)
|++|||++++++||..++++|..++++++|++|+++|.++++.+-.+
T Consensus 175 ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg~~~~~~~~~~ 221 (261)
T 3nzj_H 175 LTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLT 221 (261)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCCcEEEeccccC
Confidence 99999999999999999999999999999999999988887765444
No 34
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=9e-46 Score=332.43 Aligned_cols=206 Identities=17% Similarity=0.241 Sum_probs=192.6
Q ss_pred hchHHHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhc-
Q 023620 22 VEYAMEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSY- 97 (279)
Q Consensus 22 vEYa~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~- 97 (279)
.+-+++++++|+|+|||+++||||||+|+|.+++ + +++.+|||+|++||+|+++|+.+|++.|+++++.+++.|++
T Consensus 31 ~~~~~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~ 110 (266)
T 1g0u_M 31 MVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYD 110 (266)
T ss_dssp ---CCCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhc
Confidence 4567889999999999999999999999999875 3 57889999999999999999999999999999999999998
Q ss_pred ----ccCCCCCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCC-CcEEEEEcCCceEEeeceEEecCCcHHHHHHH
Q 023620 98 ----TYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEK-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYL 172 (279)
Q Consensus 98 ----~~~~~i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~-Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~L 172 (279)
.++.+++++.+++++++++ |+++.+.|||+|++||||||++ ||+||++||+|++.+++++|+|+++++++++|
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~l--y~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 188 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVM--YQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLL 188 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHH--HHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHH
T ss_pred cchhhcCCCCCHHHHHHHHHHHH--HHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHH
Confidence 9999999999999999998 6677788999999999999975 89999999999999999999999999999999
Q ss_pred HHhhcCCC-----CCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHHH
Q 023620 173 ERRFENFS-----ESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQKL 231 (279)
Q Consensus 173 e~~~~~~~-----~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~~ 231 (279)
|+.|+ + +||++||++++++||+.+.+||..++.+++|++|+++++|+++++++|+.+
T Consensus 189 e~~~~--~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g~~~~~~~ei~~~ 250 (266)
T 1g0u_M 189 RKVVD--RESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTGLTFKKNLQVENM 250 (266)
T ss_dssp TTTCS--SGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTEEEEEEEEECCCC
T ss_pred HHhhc--ccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCCeEEcCHHHhhhh
Confidence 99998 6 999999999999999999999999999999999999845999999999877
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=3.4e-44 Score=308.37 Aligned_cols=188 Identities=18% Similarity=0.253 Sum_probs=177.7
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 81 (198)
T 1ryp_K 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVS 81 (198)
T ss_dssp CCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred ceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 789999999999999999999775 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC--CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE--KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDL 187 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eea 187 (279)
+++++.++.+++. ++||+|++||||||+ +||+||.+||+|++.+++++|+|+++++++++||++|+ ++||++||
T Consensus 82 ~~l~~~l~~~~~~--r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~--~~~s~eea 157 (198)
T 1ryp_K 82 SFVRQELAKSIRS--RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYR--PDMTTEEG 157 (198)
T ss_dssp HHHHHHHHHHTTS--SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCC--TTCCHHHH
T ss_pred HHHHHHHHHhccc--CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcC--CCCCHHHH
Confidence 9999999887642 349999999999995 78999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCH
Q 023620 188 IKDALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQ 225 (279)
Q Consensus 188 i~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~ 225 (279)
++++++||..+.++|..++++++|++|+++| |+++++
T Consensus 158 ~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~ 194 (198)
T 1ryp_K 158 LDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IRQVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EEEECC
T ss_pred HHHHHHHHHHHHHhCccCCCceEEEEEcCCC-EEEecc
Confidence 9999999999999999999999999999985 988875
No 36
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=5.4e-44 Score=310.51 Aligned_cols=188 Identities=16% Similarity=0.250 Sum_probs=176.1
Q ss_pred hccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCH
Q 023620 29 VKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPV 105 (279)
Q Consensus 29 v~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~ 105 (279)
+++|+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++++++++++
T Consensus 6 v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 85 (213)
T 1iru_M 6 VFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTT 85 (213)
T ss_dssp CCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCH
T ss_pred cCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCH
Confidence 6899999999999999999999999876 4688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCC-cEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcC------
Q 023620 106 GRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFEN------ 178 (279)
Q Consensus 106 ~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~------ 178 (279)
+.+++++++++ |+++ .|||+|++||||||++| |+||.+||+|++.+++++|+|+|+++++++||+.|++
T Consensus 86 ~~la~~l~~~~--y~~r--~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~ 161 (213)
T 1iru_M 86 GAIAAMLSTIL--YSRR--FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNV 161 (213)
T ss_dssp HHHHHHHHHHH--HHTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSC
T ss_pred HHHHHHHHHHH--HhhC--CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhcccccccccc
Confidence 99999999998 6665 78999999999999755 9999999999999999999999999999999999332
Q ss_pred C-CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEE
Q 023620 179 F-SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFH 221 (279)
Q Consensus 179 ~-~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~ 221 (279)
+ ++||++||++++++||..+.++|..++++++|++|+++| ++
T Consensus 162 ~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~ 204 (213)
T 1iru_M 162 EHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IR 204 (213)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eE
Confidence 1 799999999999999999999999999999999999986 54
No 37
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=2.1e-44 Score=317.87 Aligned_cols=190 Identities=23% Similarity=0.259 Sum_probs=181.1
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.++++ .++.+|||+|++||+|+++|+.+|++.+.++++.++++|+++++++++++.++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVT 80 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHH
Confidence 689999999999999999999875 47889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~ 189 (279)
+++++.++.| .+||++++||||||++||+||++||+|++.+++++|+|+|+++++++||++|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (234)
T 3unf_H 81 RILRQTLFRY-----QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQ--PNMTLEAAQE 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred HHHHHHHHhc-----CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccC--CCCCHHHHHH
Confidence 9999998654 46999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHHHHH
Q 023620 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQETVQK 230 (279)
Q Consensus 190 ~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~ei~~ 230 (279)
++++||+.++.+|..++++++|++|+++| |+++++.+++.
T Consensus 154 la~~al~~~~~~D~~sg~~iev~vi~~dg-~~~l~~~~i~~ 193 (234)
T 3unf_H 154 LLVEAITAGILSDLGSGGNVDACVITAGG-AKLQRALSTPT 193 (234)
T ss_dssp HHHHHHHHHHHHBTTCCSCEEEEEEESSC-EEEEEEEECCC
T ss_pred HHHHHHHHHHhhcCCCCCcEEEEEEECCC-EEEeCceeccc
Confidence 99999999999999999999999999985 99999998864
No 38
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=2.3e-44 Score=311.28 Aligned_cols=188 Identities=16% Similarity=0.240 Sum_probs=178.5
Q ss_pred HHHhccCCeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCC
Q 023620 26 MEAVKQGSAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESP 102 (279)
Q Consensus 26 ~~av~~G~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~ 102 (279)
++++++|+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.|.++++.++++|++++++
T Consensus 3 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~- 81 (205)
T 1ryp_H 3 KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT- 81 (205)
T ss_dssp TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-
Confidence 689999999999999999999999999987 4 467899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCC
Q 023620 103 LPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSE 181 (279)
Q Consensus 103 i~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ 181 (279)
++++.+++++++++|.|+++ |++++||||||+ .||+||.+||+|++.+++++|+|+|+++++++||++|+ ++
T Consensus 82 ~~v~~la~~l~~~~~~~~~~-----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ 154 (205)
T 1ryp_H 82 PSTETAASVFKELCYENKDN-----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFR--EN 154 (205)
T ss_dssp CCHHHHHHHHHHHHHHTTTT-----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCC--TT
T ss_pred CCHHHHHHHHHHHHHhhhcC-----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccC--CC
Confidence 99999999999999988653 899999999997 78999999999999999999999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEE
Q 023620 182 STREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFH 221 (279)
Q Consensus 182 ~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~ 221 (279)
||++||++++++||+.+.++|..++++++|++|+++|..+
T Consensus 155 ~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g~~~ 194 (205)
T 1ryp_H 155 MSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAGVER 194 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCCEEE
Confidence 9999999999999999999999999999999999987443
No 39
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=4e-43 Score=307.33 Aligned_cols=188 Identities=23% Similarity=0.234 Sum_probs=177.2
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSAL 80 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 689999999999999999999875 46889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~ 189 (279)
+++++.++.| +|||++++||||||++||+||++||+|++.+++++|+|+|+++++++||++|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (222)
T 1ryp_I 81 QMLKQHLFKY-----QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWK--QDLTKEEAIK 153 (222)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCC--SSCCHHHHHH
T ss_pred HHHHHHHhhc-----CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCC--CCcCHHHHHH
Confidence 9999998654 57999999999999989999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHH
Q 023620 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQET 227 (279)
Q Consensus 190 ~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~e 227 (279)
++++||+.++++|..++++++|++|+++++++++.+.+
T Consensus 154 la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~~~~~ 191 (222)
T 1ryp_I 154 LASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYL 191 (222)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTSCEEEEEEEE
T ss_pred HHHHHHHHHHhccccCCCcEEEEEEECCCCEEEEecee
Confidence 99999999999999999999999999987688775444
No 40
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=5.4e-43 Score=306.40 Aligned_cols=187 Identities=20% Similarity=0.288 Sum_probs=175.4
Q ss_pred HhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccC-CCC
Q 023620 28 AVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYE-SPL 103 (279)
Q Consensus 28 av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~-~~i 103 (279)
.+++|+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|+++++ .++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 84 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKL 84 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 46899999999999999999999999875 46889999999999999999999999999999999999999999 999
Q ss_pred CHHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCC-cEEEEEcCCceEEeeceEEecCCcHHHHHHHHHh-------
Q 023620 104 PVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKG-AHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERR------- 175 (279)
Q Consensus 104 ~~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~G-p~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~------- 175 (279)
+++.+++++++.+ |+++ .|||+|++||||||++| |+||.+||+|++.+++++|+|+++.+++++||+.
T Consensus 85 ~v~~la~~l~~~l--y~~r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 85 SINSAARNIQHLL--YGKR--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp CHHHHHHHHHHHH--HTTT--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CHHHHHHHHHHHH--HhcC--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 9999999999988 5443 67999999999999755 9999999999999999999999999999999998
Q ss_pred ----------hcCCCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEE
Q 023620 176 ----------FENFSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFH 221 (279)
Q Consensus 176 ----------~~~~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~ 221 (279)
|+ ++|++|||++++++||..+.++|..++++++|++|+++| ++
T Consensus 161 ~~~~~~~~~~~~--~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~ 213 (222)
T 1ryp_M 161 EPGTNGKVKKPL--KYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VR 213 (222)
T ss_dssp CTTSTTCSBCCC--CCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EE
T ss_pred ccccccccccCC--CCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eE
Confidence 55 799999999999999999999999999999999999986 44
No 41
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=1.1e-42 Score=300.70 Aligned_cols=184 Identities=16% Similarity=0.215 Sum_probs=173.4
Q ss_pred hccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCH
Q 023620 29 VKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPV 105 (279)
Q Consensus 29 v~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~ 105 (279)
+.+|+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++++++++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v 84 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKP 84 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCH
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCH
Confidence 4789999999999999999999999886 3588999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC--CCcEEEEEcCCceEEee-ceEEecCCcHHHHHHHHHhhcCCCCC
Q 023620 106 GRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE--KGAHLYYNCPSGNYFEY-QAFAIGSRSQAAKTYLERRFENFSES 182 (279)
Q Consensus 106 ~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~-~~~aiG~gs~~a~~~Le~~~~~~~~~ 182 (279)
+.+++++++++ |+++. .||+|++||||||+ +||+||++||+|++..+ .++|+|+|+++++++||++|+ ++|
T Consensus 85 ~~la~~l~~~~--y~~r~--~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~~ 158 (205)
T 1iru_J 85 YTLMSMVANLL--YEKRF--GPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWE--PNM 158 (205)
T ss_dssp HHHHHHHHHHH--HTTTT--SCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCC--SSC
T ss_pred HHHHHHHHHHH--HHhcC--CCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccC--CCC
Confidence 99999999998 77653 39999999999994 78999999999999766 569999999999999999999 899
Q ss_pred CHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 183 TREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 183 s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
+++||++++++||+.+.++|..++++++|++|+++|
T Consensus 159 s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 194 (205)
T 1iru_J 159 DPDHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK 194 (205)
T ss_dssp CHHHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB
T ss_pred CHHHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC
Confidence 999999999999999999999999999999999987
No 42
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.9e-42 Score=298.86 Aligned_cols=184 Identities=21% Similarity=0.251 Sum_probs=173.4
Q ss_pred HhccCCeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCC
Q 023620 28 AVKQGSAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLP 104 (279)
Q Consensus 28 av~~G~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~ 104 (279)
.+.+|+|+|||+++||||||+|+|.++++ +++.+|||+|+ |++|+++|+.+|++.|.++++.+++.|+++++.+++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~ 82 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIE 82 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence 35789999999999999999999999886 35889999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeC--CCcEEEEEcCCceEEee-ceEEecCCcHHHHHHHHHhhcCCCC
Q 023620 105 VGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDE--KGAHLYYNCPSGNYFEY-QAFAIGSRSQAAKTYLERRFENFSE 181 (279)
Q Consensus 105 ~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~--~Gp~Ly~iDp~G~~~~~-~~~aiG~gs~~a~~~Le~~~~~~~~ 181 (279)
++.+++++++++ |+++.+ ||+|++||||||+ +||+||.+||+|++..+ .++|+|+|+++++++||++|+ ++
T Consensus 83 v~~la~~l~~~~--y~~~~~--P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~--~~ 156 (204)
T 1ryp_J 83 PETFTQLVSSSL--YERRFG--PYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYE--PN 156 (204)
T ss_dssp HHHHHHHHHHHH--HTTTTS--CCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCC--SS
T ss_pred HHHHHHHHHHHH--HHhcCC--CceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcC--CC
Confidence 999999999998 777643 9999999999995 78999999999999776 569999999999999999999 89
Q ss_pred CCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC
Q 023620 182 STREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE 218 (279)
Q Consensus 182 ~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~ 218 (279)
|+++||++++++||..+.++|..++++++|++|+++|
T Consensus 157 ~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g 193 (204)
T 1ryp_J 157 LEPEDLFETISQALLNAADRDALSGWGAVVYIIKKDE 193 (204)
T ss_dssp CCHHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC
T ss_pred cCHHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC
Confidence 9999999999999999999999999999999999987
No 43
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.4e-43 Score=304.70 Aligned_cols=191 Identities=16% Similarity=0.187 Sum_probs=177.9
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|++.++++++++.++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 80 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAA 80 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 68999999999999999999987 4 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeec-eEEecCCcHHHHHHHHHhhcCCCCCCHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQ-AFAIGSRSQAAKTYLERRFENFSESTREDL 187 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~-~~aiG~gs~~a~~~Le~~~~~~~~~s~eea 187 (279)
+++++.++.+ +|||+|++||||||+ .||+||. |+|++..++ +.++|+++++++++||++|+ ++||++||
T Consensus 81 ~~l~~~l~~~-----~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~--~~ms~eea 151 (199)
T 3unf_N 81 NVVKNISYKY-----REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYK--PGMTPEEC 151 (199)
T ss_dssp HHHHHHHHHT-----TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCC--SSCCHHHH
T ss_pred HHHHHHHHhc-----CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcC--CCCCHHHH
Confidence 9999998643 579999999999997 6799999 999987765 55569999999999999999 89999999
Q ss_pred HHHHHHHHHHHhccCccCCCcEEEEEEecCC-CEEEeCHHHHHHHH
Q 023620 188 IKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKLI 232 (279)
Q Consensus 188 i~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-~f~~l~~~ei~~~l 232 (279)
++++++||..+.++|..++++++|++|+++| .|++|+++||++++
T Consensus 152 ~~la~~al~~~~~~d~~sg~~i~v~vi~~~g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 152 RRFTTNAITLAMNRDGSSGGVIYLVTITAAGVDHRVILGDELPKFY 197 (199)
T ss_dssp HHHHHHHHHHHHHHCTTCCSCEEEEEECSSCEEEEEECGGGSCCCC
T ss_pred HHHHHHHHHHHHHhccccCCCeEEEEEcCCCEEEEEcCcccCcccc
Confidence 9999999999999999999999999999997 58999999998764
No 44
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.7e-42 Score=298.55 Aligned_cols=187 Identities=21% Similarity=0.251 Sum_probs=172.9
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.+++ + .++.+|||+|++|++|+++|+.+|++.++++++.+++.|+++++++++++.++
T Consensus 2 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a 81 (201)
T 1iru_K 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAA 81 (201)
T ss_dssp CCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHH
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 78999999999999999999975 4 57889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeC-CCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDE-KGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLI 188 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai 188 (279)
+++++.+. + +..++|||+|++||||||+ +||+||.+||+|++.+++++|+|+++++++++||++|+ ++|+++||+
T Consensus 82 ~~~~~~l~-~-~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~~s~eea~ 157 (201)
T 1iru_K 82 NFTRRNLA-D-CLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYT--PTISRERAV 157 (201)
T ss_dssp HHHHHHHH-H-HHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCC--TTCCHHHHH
T ss_pred HHHHHHHH-H-HHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhccc--CCCCHHHHH
Confidence 99887652 1 2223479999999999997 68999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeC
Q 023620 189 KDALMAIRETLQGETLKSSICTVAVVGAGEPFHILD 224 (279)
Q Consensus 189 ~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~ 224 (279)
+++++||+.+.+||..++++++|++|+++| +++++
T Consensus 158 ~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~ 192 (201)
T 1iru_K 158 ELLRKCLEELQKRFILNLPTFSVRIIDKNG-IHDLD 192 (201)
T ss_dssp HHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EECCC
T ss_pred HHHHHHHHHHHhhccccCCceEEEEEcCCC-eEEee
Confidence 999999999999999999999999999986 77665
No 45
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=4.8e-42 Score=302.74 Aligned_cols=187 Identities=22% Similarity=0.232 Sum_probs=176.2
Q ss_pred CeEEEEEeCCEEEEEEecCCCccc---ccccccEEEEcCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSEL---SSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRLV 109 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~l---~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~la 109 (279)
+|+|||+++||||||+|+|.++++ +++.+|||+|++|++|+++|+.+|++.|.++++.+++.|+++++++++++.++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la 80 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTAN 80 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 589999999999999999999875 46789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHH
Q 023620 110 VQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIK 189 (279)
Q Consensus 110 ~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~ 189 (279)
+++++.++.| ++||++++||||||++||+||++||+|++.+++++|+|+|++.++++||++|+ ++|+++||++
T Consensus 81 ~~l~~~l~~~-----~~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~--~~ms~eeA~~ 153 (234)
T 1iru_I 81 RMLKQMLFRY-----RGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFR--PDMEEEEAKN 153 (234)
T ss_dssp HHHHHHHHHT-----TTCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCC--TTCCHHHHHT
T ss_pred HHHHHHHHhc-----CCCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhcc--CCCCHHHHHH
Confidence 9999988654 36999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHHHHHhccCccCCCcEEEEEEecCCCEEEeCHHH
Q 023620 190 DALMAIRETLQGETLKSSICTVAVVGAGEPFHILDQET 227 (279)
Q Consensus 190 ~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l~~~e 227 (279)
++++||+.+..+|..++++++|++|+++| ++++.+.+
T Consensus 154 la~~al~~a~~~d~~sg~~i~v~vi~k~g-~~~~~~~~ 190 (234)
T 1iru_I 154 LVSEAIAAGIFNDLGSGSNIDLCVISKNK-LDFLRPYT 190 (234)
T ss_dssp HHHHHHHHHHHHCTTCCSCEEEEEEETTE-EECCSEEE
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEECCc-EEEEccee
Confidence 99999999999999999999999999986 88776544
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=1.2e-35 Score=251.86 Aligned_cols=167 Identities=14% Similarity=0.108 Sum_probs=151.0
Q ss_pred ccCCeEEEEEeCCEEEEEEecCCCcc-c---ccccccEEEE-cCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCC
Q 023620 30 KQGSAAIGLRSKTHVVLGCVNKANSE-L---SSHQKKIFKV-DDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLP 104 (279)
Q Consensus 30 ~~G~tvVgik~~dgVVlaad~r~~~~-l---~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~ 104 (279)
.+|+|+|||+++||||||+|+|.+++ + +++.+|||+| ++|++|+++|+.+|++.|.++++.+++.|+ +
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g---- 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G---- 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T----
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C----
Confidence 67999999999999999999999974 3 4678999999 999999999999999999999999999988 3
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEe--eceEEecCCcHHHHHHHHHhhcCCC--
Q 023620 105 VGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFE--YQAFAIGSRSQAAKTYLERRFENFS-- 180 (279)
Q Consensus 105 ~~~la~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~--~~~~aiG~gs~~a~~~Le~~~~~~~-- 180 (279)
.+.+.++++.|.++++...|||++++||| +||+||++||+|++.+ ++++|+|+|+++++++||++|+ +
T Consensus 76 --~~~~~~~~l~~~~~~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~--~~~ 147 (180)
T 2z3b_A 76 --NLKRAAVELAKEWRSDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKK--HAG 147 (180)
T ss_dssp --CHHHHHHHHHHHHHHCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHH--HHG
T ss_pred --ChHHHHHHHHHHHHhhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhh--ccC
Confidence 24455556667778888899999999999 3799999999999998 4999999999999999999998 6
Q ss_pred -CCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 181 -ESTREDLIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 181 -~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
+|+.||+ +++||+.+.+||..++++++|.+|
T Consensus 148 ~~mt~eel---~~~al~~a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 148 ESMSASEI---ARAALETAGEICVYTNDQIILEEL 179 (180)
T ss_dssp GGCCHHHH---HHHHHHHHHHHCTTCCSCCEEEEE
T ss_pred CCCCHHHH---HHHHHHHHHHhcCccCCeEEEEEE
Confidence 8999994 679999999999999999999988
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=6.3e-35 Score=245.31 Aligned_cols=165 Identities=17% Similarity=0.143 Sum_probs=145.7
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEE-cCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKV-DDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRL 108 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~l 108 (279)
+|+|||+++||||||+|+|.+++ + +++.+|||+| ++|++|+++|+.+|++.|.++++.+++.|+++ +
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~---------~ 71 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN---------L 71 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC---------H
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc---------H
Confidence 58999999999999999999975 3 5788999999 99999999999999999999999999998854 2
Q ss_pred HHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeec--eEEecCCcHHHHHHHHHhhcCCCCCCHHH
Q 023620 109 VVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQ--AFAIGSRSQAAKTYLERRFENFSESTRED 186 (279)
Q Consensus 109 a~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~--~~aiG~gs~~a~~~Le~~~~~~~~~s~ee 186 (279)
.+.++++.+.++++...|||++++|++ | ||+||++||+|++.+++ ++|+|+|+++++++||+.|+. ++|+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~ms~-- 144 (171)
T 1m4y_A 72 TKAAVELAKDWRTDRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRN-TDLSA-- 144 (171)
T ss_dssp HHHHHHHHHHHHHCTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHH-CCCCH--
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhccc-CCCCH--
Confidence 344444455566666678999999998 5 89999999999999988 999999999999999999984 58996
Q ss_pred HHHHHHHHHHHHhccCccCCCcEEEEEE
Q 023620 187 LIKDALMAIRETLQGETLKSSICTVAVV 214 (279)
Q Consensus 187 ai~~a~~al~~~~~~d~~~~~~i~I~ii 214 (279)
++++++||+.+.+||..++++++|.++
T Consensus 145 -~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 -REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp -HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred -HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 667899999999999999999999864
No 48
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=9.5e-35 Score=244.97 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=147.3
Q ss_pred CeEEEEEeCCEEEEEEecCCCcc-c--ccccccEEEE-cCcEEEEEecchhHHHHHHHHHHHHHHhhhcccCCCCCHHHH
Q 023620 33 SAAIGLRSKTHVVLGCVNKANSE-L--SSHQKKIFKV-DDHIGVAIAGLTADGRVLSRYMRSECINYSYTYESPLPVGRL 108 (279)
Q Consensus 33 ~tvVgik~~dgVVlaad~r~~~~-l--~~~~~KI~~I-~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~~~~i~~~~l 108 (279)
+|+|||+++||||||+|+|.+++ + +++.+|||+| ++|++|+++|+.+|++.|.++++.+++.|++ + +
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~---~ 71 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------H---L 71 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------C---H
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------c---H
Confidence 58999999999999999999976 3 5788999999 9999999999999999999999999999986 2 3
Q ss_pred HHHHHHHHHHhhhccCCCCcceeeEEEEEeCCCcEEEEEcCCceEEeec---eEEecCCcHHHHHHHHHhhcCCCCCCHH
Q 023620 109 VVQLADKAQVCTQRSWKRPYGVGLLVAGLDEKGAHLYYNCPSGNYFEYQ---AFAIGSRSQAAKTYLERRFENFSESTRE 185 (279)
Q Consensus 109 a~~l~~~~q~~t~~~~~RP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~---~~aiG~gs~~a~~~Le~~~~~~~~~s~e 185 (279)
.+.++.+.|.++++...||++ ++++|+| ||+||++||+|++.+++ ++|+|+|+++++++||++|+. ++|+.+
T Consensus 72 ~~~~~~l~~~~~~~~~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~-~~mt~~ 146 (174)
T 1g3k_A 72 LKSAVELAKDWRTDRALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVEN-TELSAH 146 (174)
T ss_dssp HHHHHHHHHHHHHSTTGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHH-CCCCHH
T ss_pred HHHHHHHHHHHHhccCcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhccc-CCCCHH
Confidence 455556666677777788864 6777887 79999999999999988 999999999999999999984 589955
Q ss_pred HHHHHHHHHHHHHhccCccCCCcEEEEEEe
Q 023620 186 DLIKDALMAIRETLQGETLKSSICTVAVVG 215 (279)
Q Consensus 186 eai~~a~~al~~~~~~d~~~~~~i~I~ii~ 215 (279)
+++++||+.+.+||..++++++|++|+
T Consensus 147 ---~l~~~al~~a~~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 147 ---EIVEKSLRIAGDICVFTNTNFTIEELP 173 (174)
T ss_dssp ---HHHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred ---HHHHHHHHHHHHhccccCCceEEEEec
Confidence 688999999999999999999999985
No 49
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=60.84 E-value=19 Score=25.98 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCC-CEEEeCHHHHHHHHHHhhcccCC
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGE-PFHILDQETVQKLIDSFEIAGTE 241 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~-~f~~l~~~ei~~~l~~~~~~~~~ 241 (279)
++++.+++.+.+++.++. ..+..+.+.+++.+| ...+.+.+|++..|.-++..++.
T Consensus 24 ~~i~~~~L~~kv~~~~~~------~~~~~f~lky~DEeGD~itisSd~EL~eAl~l~~~n~~~ 80 (89)
T 1vd2_A 24 PSISFEGLCNEVRDMCSF------DNEQLFTMKWIDEEGDPCTVSSQLELEEAFRLYELNKDS 80 (89)
T ss_dssp TTCCHHHHHHHHHHHTTC------CSSCCEEEEECCSSSCCEECCSHHHHHHHHHHHHHTSCC
T ss_pred CCCCHHHHHHHHHHHhCC------CCCCeEEEEEECCCCCcccccCHHHHHHHHHHHHccCCC
Confidence 678999998887765431 245679999999987 47899999999999988766543
No 50
>1hbx_G ETS-domain protein ELK-4; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: a.4.5.21
Probab=32.61 E-value=41 Score=26.78 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=23.7
Q ss_pred EEEEecCCCEEEeCHHHHHHHHHHhhc
Q 023620 211 VAVVGAGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 211 I~ii~k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
|++++++|.|+++++++|..++..-+.
T Consensus 25 I~Wt~~~geFklvdpe~VArLWG~rKn 51 (157)
T 1hbx_G 25 ICWTSNDGQFKLLQAEEVARLWGIRKN 51 (157)
T ss_dssp EEECSSSSCEEETTHHHHHHHHHHGGG
T ss_pred eEEeCCCCEEEecCcHHHHHHHHhccC
Confidence 889999999999999999999887553
No 51
>1bc8_C SAP-1, protein (SAP-1 ETS domain); DNA-binding domain, winged helix-turn-helix, DNA-binding specificity, transcription/DNA complex; HET: DNA; 1.93A {Homo sapiens} SCOP: a.4.5.21 PDB: 1bc7_C* 1k6o_A 1dux_C*
Probab=28.51 E-value=27 Score=25.42 Aligned_cols=28 Identities=18% Similarity=0.240 Sum_probs=24.4
Q ss_pred EEEEecCCCEEEeCHHHHHHHHHHhhcc
Q 023620 211 VAVVGAGEPFHILDQETVQKLIDSFEIA 238 (279)
Q Consensus 211 I~ii~k~~~f~~l~~~ei~~~l~~~~~~ 238 (279)
|++++++|.|+.+++++|..+...-+..
T Consensus 24 I~W~~~~g~Fkl~d~~~VArlWG~rKnk 51 (93)
T 1bc8_C 24 ICWTSNDGQFKLLQAEEVARLWGIRKNK 51 (93)
T ss_dssp SEECSSSSEEECTTHHHHHHHHHHHHTC
T ss_pred eEEeCCCCEEEecCHHHHHHHHHhcCCC
Confidence 7888988999999999999998877643
No 52
>3rj2_X ORF158L protein, putative uncharacterized protein; histone 3, protein binding; 2.20A {Singapore grouper iridovirus}
Probab=27.69 E-value=14 Score=28.19 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.5
Q ss_pred CCCcceeeCCCCCcc
Q 023620 6 YDTDVTTWSPAGRLF 20 (279)
Q Consensus 6 yd~~~t~fsp~Grl~ 20 (279)
-|..+|.|+|.|||.
T Consensus 55 m~h~vTfF~~~Grl~ 69 (138)
T 3rj2_X 55 MRHRVTFFNATGRYI 69 (138)
T ss_dssp CEEEEEEECTTSCEE
T ss_pred ceeEEEEEcCCCcEE
Confidence 356799999999976
No 53
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=27.15 E-value=34 Score=28.59 Aligned_cols=32 Identities=16% Similarity=0.131 Sum_probs=27.5
Q ss_pred eeeCCCCCcchhchHHHHhccCCeEEEEEeCC
Q 023620 11 TTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKT 42 (279)
Q Consensus 11 t~fsp~Grl~QvEYa~~av~~G~tvVgik~~d 42 (279)
|+||++|..---|++..|...|-..|||+-.+
T Consensus 8 t~~S~DG~~~~ee~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 8 TPLCGHAEGHPEAYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp CGGGSSCCSCHHHHHHHHHHTTCSEEEEEEEC
T ss_pred cCCCCCCCCCHHHHHHHHHHcCCCEEEEcCCC
Confidence 57999998887799999999999998887654
No 54
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=26.79 E-value=1.4e+02 Score=24.45 Aligned_cols=42 Identities=24% Similarity=0.086 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC---EEEeC
Q 023620 179 FSESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP---FHILD 224 (279)
Q Consensus 179 ~~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~---f~~l~ 224 (279)
++.+++++|.+++..++..+.++ +..+.|.|++..|. |.+++
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~lla~~RmD 106 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGNTLVTLRGD 106 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEEEEECT
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCCEEEEEecC
Confidence 47899999999999999998764 45789999998774 44554
No 55
>2lrg_A Uncharacterized protein; unknown function; NMR {Bacteroides vulgatus} PDB: 3u6g_A*
Probab=26.35 E-value=42 Score=24.96 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=27.2
Q ss_pred hccCCCCcceeeEEEEEeCCCc-EEEEEcCCceEEeece
Q 023620 121 QRSWKRPYGVGLLVAGLDEKGA-HLYYNCPSGNYFEYQA 158 (279)
Q Consensus 121 ~~~~~RP~gv~~lvaG~D~~Gp-~Ly~iDp~G~~~~~~~ 158 (279)
|......|.+++.+++.+.+|| .|| |-.|.|....+
T Consensus 16 QSG~td~Fe~~~~fGa~n~~GpakLY--~e~GeYlGdSy 52 (126)
T 2lrg_A 16 QSGDTDSFEVSVSIGGADKGGPAKLY--NDKGEYIGDSY 52 (126)
T ss_dssp EEESGGGEEEEEEEECEETTEECCEE--CTTSCEEESEE
T ss_pred ecCCccceEEEEEEeeccCCCCceee--cCCCcEechhh
Confidence 4455567999999999999887 576 57788876554
No 56
>1fli_A FLI-1; transcription/DNA; NMR {Homo sapiens} SCOP: a.4.5.21
Probab=25.81 E-value=36 Score=25.02 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=24.1
Q ss_pred EEEEecCCCEEEeCHHHHHHHHHHhhcc
Q 023620 211 VAVVGAGEPFHILDQETVQKLIDSFEIA 238 (279)
Q Consensus 211 I~ii~k~~~f~~l~~~ei~~~l~~~~~~ 238 (279)
|.+.+++|.|+.+++++|..++..-+..
T Consensus 25 I~W~~~~g~Fklvd~e~VArlWG~rK~k 52 (98)
T 1fli_A 25 ITWEGTNGEFKMTDPDEVARRWGERKSK 52 (98)
T ss_dssp EECTTSSSSCEECCHHHHHHHHHHHTCC
T ss_pred eEEeCCCCEEEEcCHHHHHHHHHhccCC
Confidence 7788888899999999999998877653
No 57
>1yo5_C SAM pointed domain containing ETS transcription factor; protein-DNA complex, double helix, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.4.5.21
Probab=25.20 E-value=90 Score=22.79 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=23.2
Q ss_pred EEEEec-CCCEEEeCHHHHHHHHHHhhc
Q 023620 211 VAVVGA-GEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 211 I~ii~k-~~~f~~l~~~ei~~~l~~~~~ 237 (279)
|+++++ +|.|+++++++|..++..-+.
T Consensus 31 I~W~~~~~g~Fkl~d~~~VArlWG~rKn 58 (97)
T 1yo5_C 31 IRWLNKEKGIFKIEDSAQVARLWGIRKN 58 (97)
T ss_dssp EEEEETTTTEEEESCHHHHHHHHHHHHT
T ss_pred eEeecCCCCEEEecCHHHHHHHHHhcCC
Confidence 788875 578999999999999887774
No 58
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=24.79 E-value=40 Score=27.16 Aligned_cols=31 Identities=6% Similarity=-0.113 Sum_probs=28.6
Q ss_pred ceeeCCCCCcc-hhchHHHHhccCCeEEEEEe
Q 023620 10 VTTWSPAGRLF-QVEYAMEAVKQGSAAIGLRS 40 (279)
Q Consensus 10 ~t~fsp~Grl~-QvEYa~~av~~G~tvVgik~ 40 (279)
+-+||+.||-- =||-|+++-.+|-.+|+|+.
T Consensus 81 vii~S~Sg~n~~~ie~A~~ake~G~~vIaITs 112 (170)
T 3jx9_A 81 VLIFTPDTERSDLLASLARYDAWHTPYSIITL 112 (170)
T ss_dssp EEEEESCSCCHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEeCCCCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 66899999877 89999999999999999988
No 59
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=23.08 E-value=1.3e+02 Score=19.24 Aligned_cols=35 Identities=9% Similarity=0.211 Sum_probs=24.6
Q ss_pred HHHHHHHHhhcCCCCCCH--HHHHHHHHHHHHHHhccC
Q 023620 167 AAKTYLERRFENFSESTR--EDLIKDALMAIRETLQGE 202 (279)
Q Consensus 167 ~a~~~Le~~~~~~~~~s~--eeai~~a~~al~~~~~~d 202 (279)
.+..||....+. ..++. .|-++.|++||..++.-+
T Consensus 8 sIi~FL~~~~~~-~~~s~D~~ESleVAiqCi~~aF~v~ 44 (52)
T 4gof_A 8 AIIQFLHDQLRH-GGLSSDAQESLEVAIQCLETAFGVT 44 (52)
T ss_dssp HHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccc-CCcCHhHHHHHHHHHHHHHHHcCCC
Confidence 355677665543 45655 478999999999998654
No 60
>4avp_A ETS translocation variant 1; transcription, transcriptional activation and repression, DN binding protein, E twenty-SIX, erwing sarcoma; 1.82A {Homo sapiens} PDB: 4b06_A
Probab=23.05 E-value=70 Score=23.75 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=23.6
Q ss_pred EEEEecCCCEEEeCHHHHHHHHHHhhc
Q 023620 211 VAVVGAGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 211 I~ii~k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
|+++++++.|+++++++|..+...-+.
T Consensus 31 I~W~~~~~~Fkl~dp~~VA~lWG~rKn 57 (106)
T 4avp_A 31 IAWTGRGMEFKLIEPEEVARRWGIQKN 57 (106)
T ss_dssp EEECSSTTEEEESSHHHHHHHHHHHTT
T ss_pred CcccCCCceEEecCHHHHHHHHHhccC
Confidence 788898888999999999999887764
No 61
>2kwp_A Transcription elongation protein NUSA; NMR {Escherichia coli}
Probab=22.71 E-value=1.5e+02 Score=22.49 Aligned_cols=44 Identities=11% Similarity=0.097 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCCEEEe
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEPFHIL 223 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~f~~l 223 (279)
.+++.+..+..+..||..+..+.-....+++|.+=.+.|.|+.+
T Consensus 16 KgI~~e~v~eaie~AL~~A~kk~~g~~~~~~V~id~~tG~~~v~ 59 (129)
T 2kwp_A 16 KALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTF 59 (129)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEETTTTEEEEE
T ss_pred hCcCHHHHHHHHHHHHHHHHHHhcCCccceEEEEECCCCeEEEE
Confidence 68999999999999999998776555678888766666766544
No 62
>1awc_A Protein (GA binding protein alpha); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: a.4.5.21
Probab=22.61 E-value=42 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.0
Q ss_pred EEEEecCCCEEEeCHHHHHHHHHHhhc
Q 023620 211 VAVVGAGEPFHILDQETVQKLIDSFEI 237 (279)
Q Consensus 211 I~ii~k~~~f~~l~~~ei~~~l~~~~~ 237 (279)
|++++++|.|+++++++|..++..-+.
T Consensus 20 I~W~~~~geFkl~d~e~VArlWG~rKn 46 (110)
T 1awc_A 20 ISWVGDEGEFKLNQPELVAQKWGQRKN 46 (110)
T ss_dssp SEECSSSSEEECSSHHHHHHHHHHHHT
T ss_pred eEEeCCCCEEEecCHHHHHHHHHHccC
Confidence 788899899999999999999887764
No 63
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=21.22 E-value=1.1e+02 Score=23.74 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhccCccCCCcEEEEEEecCCC---EEEeCH
Q 023620 180 SESTREDLIKDALMAIRETLQGETLKSSICTVAVVGAGEP---FHILDQ 225 (279)
Q Consensus 180 ~~~s~eeai~~a~~al~~~~~~d~~~~~~i~I~ii~k~~~---f~~l~~ 225 (279)
+.+|+++|.+++..++..+.++ +..+.|+|++..|. |.+++.
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~ll~~~rmdg 54 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNTLLIQRMDE 54 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCEEEEEECTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCEEEEEECCC
Confidence 5689999999999999988764 56899999998774 445543
No 64
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=20.38 E-value=68 Score=22.71 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=33.8
Q ss_pred EeCCCcEEEEEcCCce-EEeeceEEecCCcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHh
Q 023620 137 LDEKGAHLYYNCPSGN-YFEYQAFAIGSRSQAAKTYLERRFENFSESTREDLIKDALMAIRETL 199 (279)
Q Consensus 137 ~D~~Gp~Ly~iDp~G~-~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~s~eeai~~a~~al~~~~ 199 (279)
+|..|..| .|.|+|+ .+.+.|...|..... .+-.+|.+|+++|-+.+.++...+.
T Consensus 21 ~Dg~GL~L-~V~psG~K~w~~ryr~~Gk~~~~-------~LG~yp~~sL~~AR~~a~~~r~~l~ 76 (88)
T 3jtz_A 21 SDSHGLYL-LVKPGGSRHWYLKYRISGKESRI-------ALGAYPAISLSDARQQREGIRKMLA 76 (88)
T ss_dssp ECSTTEEE-EECTTSCEEEEEEEEETTEEEEE-------EEEETTTSCHHHHHHHHHHHHHHHT
T ss_pred ecCCceEE-EEecCCCEEEEEEEEeCCeEEEE-------EeECCCCCCHHHHHHHHHHHHHHHH
Confidence 35444333 5778886 455566544432211 1123689999999999988776643
Done!