Query 023621
Match_columns 279
No_of_seqs 174 out of 1312
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 05:24:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02386 superoxide dismutase 100.0 1.4E-50 3.1E-55 346.6 19.5 150 83-271 2-151 (152)
2 PLN02642 copper, zinc superoxi 100.0 3.3E-50 7.1E-55 348.9 19.3 153 81-272 6-158 (164)
3 KOG0441 Cu2+/Zn2+ superoxide d 100.0 3.5E-44 7.5E-49 307.8 14.9 150 84-271 3-153 (154)
4 PRK15388 Cu/Zn superoxide dism 100.0 5.4E-42 1.2E-46 300.7 18.1 135 90-270 34-177 (177)
5 PRK10290 superoxide dismutase; 100.0 6.5E-42 1.4E-46 299.2 17.5 133 90-269 32-173 (173)
6 cd00305 Cu-Zn_Superoxide_Dismu 100.0 2.2E-41 4.7E-46 285.5 17.7 141 83-269 1-142 (144)
7 PF00080 Sod_Cu: Copper/zinc s 100.0 2.9E-40 6.3E-45 275.0 15.3 140 85-268 1-142 (142)
8 COG2032 SodC Cu/Zn superoxide 100.0 6.5E-38 1.4E-42 274.8 15.8 145 81-269 27-179 (179)
9 PLN02957 copper, zinc superoxi 100.0 1.1E-35 2.4E-40 268.9 16.7 128 82-271 80-207 (238)
10 KOG4656 Copper chaperone for s 100.0 7.3E-33 1.6E-37 248.5 9.9 111 147-272 107-217 (247)
11 cd00305 Cu-Zn_Superoxide_Dismu 77.3 1.8 4E-05 36.7 2.3 14 252-265 131-144 (144)
12 smart00754 CHRD A domain in th 55.8 57 0.0012 26.2 6.9 23 147-169 33-55 (118)
13 PF07452 CHRD: CHRD domain; I 40.8 1.8E+02 0.004 23.0 8.0 22 147-168 34-55 (119)
14 PF07731 Cu-oxidase_2: Multico 22.9 88 0.0019 25.1 2.9 22 148-169 42-63 (138)
15 PF07495 Y_Y_Y: Y_Y_Y domain; 21.7 87 0.0019 22.0 2.4 19 151-169 30-48 (66)
No 1
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=1.4e-50 Score=346.58 Aligned_cols=150 Identities=63% Similarity=1.016 Sum_probs=144.7
Q ss_pred eeEEEEEcCCCceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCCee
Q 023621 83 KKAVAVLKGTSNVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPGPH 162 (279)
Q Consensus 83 ~~Ava~l~g~~~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG~H 162 (279)
++|+|+|++++.|.|+|+|+|..++ .++|+++|+||+||+|
T Consensus 2 ~~a~a~~~~~~~v~G~v~f~q~~~g---------------------------------------~v~i~~~~~GL~pG~h 42 (152)
T PLN02386 2 VKAVAVLNSSEGVKGTIFFTQEGDG---------------------------------------PTTVTGSLSGLKPGLH 42 (152)
T ss_pred ceEEEEEcCCCCCEEEEEEEEcCCC---------------------------------------CEEEEEEEeCCCCCce
Confidence 5799999999889999999998777 5899999999999999
Q ss_pred eEEEeccCCCCCCCCCcCccccCCCCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEecCC
Q 023621 163 GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELE 242 (279)
Q Consensus 163 gfHIHE~GD~s~GC~SAGGHFNP~~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa~~ 242 (279)
+|||||+|||+++|.|+||||||.++.||.|++..||+||||||.++++|++++++++++++|.++++|+|||||||+++
T Consensus 43 g~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~GDLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~ 122 (152)
T PLN02386 43 GFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADP 122 (152)
T ss_pred eEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCccccccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCCCeeEEEEEecc
Q 023621 243 DDLGKGGHELSLTTGNAGGRLACGMHKKY 271 (279)
Q Consensus 243 DDlg~g~~e~S~~tGnAG~RIACGVI~~~ 271 (279)
|||++++++.|+++||+|+|||||||++.
T Consensus 123 DD~~~~~~~~s~~~G~aG~RiACgvI~~~ 151 (152)
T PLN02386 123 DDLGKGGHELSKSTGNAGGRVACGIIGLQ 151 (152)
T ss_pred CCcCCCcccccccCCCCCceEEEEEEEec
Confidence 99999999999999999999999999864
No 2
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=3.3e-50 Score=348.89 Aligned_cols=153 Identities=54% Similarity=0.918 Sum_probs=146.4
Q ss_pred cceeEEEEEcCCCceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCC
Q 023621 81 AAKKAVAVLKGTSNVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPG 160 (279)
Q Consensus 81 ~~~~Ava~l~g~~~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG 160 (279)
.-++|+|+|+++++|.|+|+|+|+.++ .|+|+++|+||+||
T Consensus 6 ~~~~A~a~~~g~~~v~G~v~f~q~~~g---------------------------------------~v~I~~~v~GL~pG 46 (164)
T PLN02642 6 GNLRAVALIAGDNNVRGCLQFVQDIFG---------------------------------------TTHVTGKISGLSPG 46 (164)
T ss_pred CCeeEEEEEcCCCCcEEEEEEEECCCC---------------------------------------cEEEEEEEcCCCCC
Confidence 347899999999899999999999777 48999999999999
Q ss_pred eeeEEEeccCCCCCCCCCcCccccCCCCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEec
Q 023621 161 PHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 240 (279)
Q Consensus 161 ~HgfHIHE~GD~s~GC~SAGGHFNP~~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa 240 (279)
+|+|||||+|||+++|.|+|+||||.++.||.|++..||+||||||+++++|++++++++++++|.+.++|+|||||||+
T Consensus 47 ~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~rH~GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa 126 (164)
T PLN02642 47 FHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHA 126 (164)
T ss_pred ceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCCcccccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCcccCCCCCCeeEEEEEeccc
Q 023621 241 LEDDLGKGGHELSLTTGNAGGRLACGMHKKYL 272 (279)
Q Consensus 241 ~~DDlg~g~~e~S~~tGnAG~RIACGVI~~~~ 272 (279)
++|||++++++.|+++||+|+|||||||++..
T Consensus 127 ~~DD~~~~~~~~s~~tGnaG~RiACGVI~~~~ 158 (164)
T PLN02642 127 DPDDLGKGGHKLSKSTGNAGSRVGCGIIGLQS 158 (164)
T ss_pred cCCccCcCcccccccCCCCCceEEEEEEEecc
Confidence 99999999999999999999999999999754
No 3
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-44 Score=307.77 Aligned_cols=150 Identities=59% Similarity=0.947 Sum_probs=144.3
Q ss_pred eEEEEEcCCC-ceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCCee
Q 023621 84 KAVAVLKGTS-NVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPGPH 162 (279)
Q Consensus 84 ~Ava~l~g~~-~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG~H 162 (279)
+|+|+|+|+. .|.|+|+|+|...+. ++.|++.|+||+||.|
T Consensus 3 ~~~avl~g~~~~V~G~i~F~Q~~~~~--------------------------------------~~~v~~~i~GL~pg~h 44 (154)
T KOG0441|consen 3 QAVAVLEGDEIQVIGVITFEQFLPGE--------------------------------------PLRVSGEVTGLPPGKH 44 (154)
T ss_pred ceEEEEecCCCCceeEEEEEEcCCCC--------------------------------------cEEEEEEEecCCCcee
Confidence 7999999976 799999999977662 6899999999999999
Q ss_pred eEEEeccCCCCCCCCCcCccccCCCCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEecCC
Q 023621 163 GFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELE 242 (279)
Q Consensus 163 gfHIHE~GD~s~GC~SAGGHFNP~~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa~~ 242 (279)
+||||+|||.++||.|+|+||||.+++||.|.++.||+||||||.++++|.+...+.|..++|.|+++|+||++|||+.+
T Consensus 45 gfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH~gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ 124 (154)
T KOG0441|consen 45 GFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRHVGDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGE 124 (154)
T ss_pred eEEEEeccCCCCChhcCCCCCCCcccCCCCccccccccccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCCCeeEEEEEecc
Q 023621 243 DDLGKGGHELSLTTGNAGGRLACGMHKKY 271 (279)
Q Consensus 243 DDlg~g~~e~S~~tGnAG~RIACGVI~~~ 271 (279)
||+++|.++.|+.+||+|+|+|||+|+..
T Consensus 125 ddLg~G~~~~s~ktgnag~r~aCgvi~~~ 153 (154)
T KOG0441|consen 125 DDLGKGGHELSKKTGNAGARPACGVIGIA 153 (154)
T ss_pred ccccCCchhhhhhccccCCCccceeeecc
Confidence 99999999999999999999999999864
No 4
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=5.4e-42 Score=300.73 Aligned_cols=135 Identities=30% Similarity=0.588 Sum_probs=122.2
Q ss_pred cCCCceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCCeeeEEEecc
Q 023621 90 KGTSNVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPGPHGFHLHEY 169 (279)
Q Consensus 90 ~g~~~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG~HgfHIHE~ 169 (279)
++++++.|+|+|+|..+| ++|+++++||+||+|+|||||+
T Consensus 34 ~~~g~~~G~v~f~~~~~g----------------------------------------v~I~~~l~GL~pG~HGfHIHe~ 73 (177)
T PRK15388 34 SGTGENIGEITVSETPYG----------------------------------------LLFTPHLNGLTPGIHGFHVHTN 73 (177)
T ss_pred CCCCceEEEEEEEEcCCc----------------------------------------EEEEEEEcCCCCcceEEEEccC
Confidence 567789999999999877 7899999999999999999999
Q ss_pred CCCC----CC----CCCcCccccCCCC-CCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEec
Q 023621 170 GDTT----NG----CMSTGAHFNPNNM-THGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 240 (279)
Q Consensus 170 GD~s----~G----C~SAGGHFNP~~~-~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa 240 (279)
|||+ +| |.|+||||||+++ .|+.|++..||+||||||+++++|++++.++++++. +.++|+|||||||+
T Consensus 74 GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~p~~~~~H~GDLpNi~a~~dG~a~~~~~~~~~~--~~~~i~GralVIHa 151 (177)
T PRK15388 74 PSCMPGMKDGKEVPALMAGGHLDPEKTGKHLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLK--SLSELKGHSLMIHK 151 (177)
T ss_pred CCccCcccCCCcccccccCCCcCCCCCCCCCCCCCCCCCcCcCcCEEECCCccEEEEEEeCCcc--cCcccCCcEEEEEC
Confidence 9997 33 8999999999997 799998888999999999999999999999998864 34699999999999
Q ss_pred CCCCCCCCCCCCcccCCCCCCeeEEEEEec
Q 023621 241 LEDDLGKGGHELSLTTGNAGGRLACGMHKK 270 (279)
Q Consensus 241 ~~DDlg~g~~e~S~~tGnAG~RIACGVI~~ 270 (279)
++|||++. ++++||+|+|||||||+.
T Consensus 152 ~~DD~~~~----p~~~GnaG~RiACGVI~~ 177 (177)
T PRK15388 152 GGDNYSDK----PAPLGGGGARFACGVIEK 177 (177)
T ss_pred CCCCCCCC----CCcCCCCCceEEEEeecC
Confidence 99999753 678999999999999963
No 5
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=6.5e-42 Score=299.24 Aligned_cols=133 Identities=32% Similarity=0.626 Sum_probs=119.8
Q ss_pred cCCCceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCCeeeEEEecc
Q 023621 90 KGTSNVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPGPHGFHLHEY 169 (279)
Q Consensus 90 ~g~~~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG~HgfHIHE~ 169 (279)
++.+++.|+|+|+|..+| ++|+++++||+||+|+|||||+
T Consensus 32 ~~~g~~~G~v~f~~~~~g----------------------------------------v~i~~~l~GL~pG~HGfHIHe~ 71 (173)
T PRK10290 32 QGVGQSIGSVTITETDKG----------------------------------------LEFSPDLKALPPGEHGFHIHAK 71 (173)
T ss_pred CCCCceEEEEEEEEcCCc----------------------------------------EEEEEEEcCCCCCceEEEEeCC
Confidence 345789999999999877 7899999999999999999999
Q ss_pred CCCC----CC----CCCcCccccCCCC-CCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEec
Q 023621 170 GDTT----NG----CMSTGAHFNPNNM-THGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 240 (279)
Q Consensus 170 GD~s----~G----C~SAGGHFNP~~~-~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa 240 (279)
|||+ +| |.|+||||||.++ .|+.|+. .+|+||||||+++++|+++++++++++. +.++|+|||||||+
T Consensus 72 Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~hg~p~~-~~H~GDL~ni~a~~dG~a~~~~~~~~~~--~~~~i~GralVIH~ 148 (173)
T PRK10290 72 GSCQPATKDGKASAAEAAGGHLDPQNTGKHEGPEG-AGHLGDLPALVVNNDGKATDPVIAPRLK--SLDEVKDKALMVHV 148 (173)
T ss_pred CccCCcccCCCcccccccCCccCCCCCcCCCCCCC-CCCcCcccCEEECCCeeEEEEEEeCCcc--CccccCCcEEEEEC
Confidence 9997 33 8999999999998 7888874 6899999999999999999999998764 46799999999999
Q ss_pred CCCCCCCCCCCCcccCCCCCCeeEEEEEe
Q 023621 241 LEDDLGKGGHELSLTTGNAGGRLACGMHK 269 (279)
Q Consensus 241 ~~DDlg~g~~e~S~~tGnAG~RIACGVI~ 269 (279)
++|||+++ ++++||+|+|||||||+
T Consensus 149 ~~DD~~~~----~~~~GnaG~RiACGVI~ 173 (173)
T PRK10290 149 GGDNMSDQ----PKPLGGGGERYACGVIK 173 (173)
T ss_pred CCCCCCCC----CCcCCCCcceEEEEeEC
Confidence 99999754 67899999999999995
No 6
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=2.2e-41 Score=285.50 Aligned_cols=141 Identities=54% Similarity=0.903 Sum_probs=131.6
Q ss_pred eeEEEEEcCCC-ceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCCe
Q 023621 83 KKAVAVLKGTS-NVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPGP 161 (279)
Q Consensus 83 ~~Ava~l~g~~-~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG~ 161 (279)
++|+|+|+++. .+.|+|+|+|..++ ++|+++++||+||.
T Consensus 1 ~~a~~~l~~~~g~v~G~v~f~q~~~~----------------------------------------v~v~~~l~GL~pG~ 40 (144)
T cd00305 1 VSAVAVLKGPDGKVVGTVTFTQQSGG----------------------------------------VTITGELSGLTPGL 40 (144)
T ss_pred CcEEEEEECCCCceEEEEEEEECCCC----------------------------------------EEEEEEEECCCCCc
Confidence 46899999874 79999999999876 78999999999999
Q ss_pred eeEEEeccCCCCCCCCCcCccccCCCCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEecC
Q 023621 162 HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHEL 241 (279)
Q Consensus 162 HgfHIHE~GD~s~GC~SAGGHFNP~~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa~ 241 (279)
|+|||||+|||+++|.|+|+||||.++.|+.|++..||+||||||+++++|++++++++++++|++.++++|||||||+.
T Consensus 41 hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~GDLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~ 120 (144)
T cd00305 41 HGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRHAGDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAG 120 (144)
T ss_pred eeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCCCCcCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCCCCCCCCCcccCCCCCCeeEEEEEe
Q 023621 242 EDDLGKGGHELSLTTGNAGGRLACGMHK 269 (279)
Q Consensus 242 ~DDlg~g~~e~S~~tGnAG~RIACGVI~ 269 (279)
+||++ ++|.|++|.|++||+|.
T Consensus 121 ~Dd~~------~~p~~~sg~~~~~G~~~ 142 (144)
T cd00305 121 QDDLG------KGPDELSGGTGNAGVRV 142 (144)
T ss_pred CCCCC------CCCCcccccceeeEeEE
Confidence 99986 46788888888888873
No 7
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=2.9e-40 Score=275.03 Aligned_cols=140 Identities=51% Similarity=0.894 Sum_probs=130.5
Q ss_pred EEEEEcCC-CceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCCeee
Q 023621 85 AVAVLKGT-SNVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPGPHG 163 (279)
Q Consensus 85 Ava~l~g~-~~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG~Hg 163 (279)
|+|+|+++ ++|+|+|+|+|..++. .+.|+++++||++|.|+
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~--------------------------------------~~~v~~~~~GL~~g~~~ 42 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGD--------------------------------------GVQVTVSLNGLPPGQHG 42 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTT--------------------------------------EEEEEEEEESSSSEEEE
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCC--------------------------------------CEEEEEEEECCCCCCce
Confidence 89999974 5799999999999762 38999999999999999
Q ss_pred EEEeccCCC-CCCCCCcCccccCCCCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEecCC
Q 023621 164 FHLHEYGDT-TNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHELE 242 (279)
Q Consensus 164 fHIHE~GD~-s~GC~SAGGHFNP~~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa~~ 242 (279)
|||||+|+| +++|.++|+||||.++.|+.|+...|++|||++++++.+|.++.+|+|.+++|+|.++|+|||||||+.+
T Consensus 43 ~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~ 122 (142)
T PF00080_consen 43 YHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHAGDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGP 122 (142)
T ss_dssp EEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCTTEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSS
T ss_pred EEEEeccccccccccccceecCccccccCCccccccccccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCC
Confidence 999999999 6799999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccCCCCCCeeEEEEE
Q 023621 243 DDLGKGGHELSLTTGNAGGRLACGMH 268 (279)
Q Consensus 243 DDlg~g~~e~S~~tGnAG~RIACGVI 268 (279)
||+ .++++|++|+|||||+|
T Consensus 123 ~d~------~~~~~g~~g~RlACg~I 142 (142)
T PF00080_consen 123 DDF------TSQPTGNAGARLACGVI 142 (142)
T ss_dssp STT------THHHHTTTTSEEEEEEE
T ss_pred CCc------ccccCCCCCCcEEEEeC
Confidence 997 47899999999999998
No 8
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.5e-38 Score=274.84 Aligned_cols=145 Identities=41% Similarity=0.661 Sum_probs=129.1
Q ss_pred cceeEEEEEc-CCCceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCC
Q 023621 81 AAKKAVAVLK-GTSNVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTP 159 (279)
Q Consensus 81 ~~~~Ava~l~-g~~~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLpp 159 (279)
...++.+++. +++..-|+|++++.+.| +.++..+.||+|
T Consensus 27 ~~~~~~~~~~~~~G~~vG~vt~~e~~~g----------------------------------------~~~~~~~~~L~p 66 (179)
T COG2032 27 QEVKANAVLVDGTGKDVGTVTITETGYG----------------------------------------LLFTPALGGLPP 66 (179)
T ss_pred ccccceeeccCCCCceeEEEEEeecCCc----------------------------------------eEEeecccCCCC
Confidence 3335555554 34567799999999988 689999999999
Q ss_pred CeeeEEEeccCCCCC------CCCCcCccccCC-CCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCC
Q 023621 160 GPHGFHLHEYGDTTN------GCMSTGAHFNPN-NMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVV 232 (279)
Q Consensus 160 G~HgfHIHE~GD~s~------GC~SAGGHFNP~-~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SII 232 (279)
|+|||||||+|+|++ .|.||||||||. ..+|+.|+++.+|+|||+||++++||+++..++++++++.+..+++
T Consensus 67 g~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p~~~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~~l~~v~ 146 (179)
T COG2032 67 GEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGPNADGGHAGDLPNLFVNADGKATLPVLAPRLKLKGLLEVK 146 (179)
T ss_pred cceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCCCCCCCCcCcCcceEECCCCcEEEEEecccceeccccccC
Confidence 999999999999987 499999999999 7899999999999999999999999999999999999999999999
Q ss_pred ccEEEEecCCCCCCCCCCCCcccCCCCCCeeEEEEEe
Q 023621 233 GRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHK 269 (279)
Q Consensus 233 GRSIVIHa~~DDlg~g~~e~S~~tGnAG~RIACGVI~ 269 (279)
|||||||+..|||.... .|+||+|+|+|||||+
T Consensus 147 G~alvIHag~Dd~~~~P----~p~G~aG~R~ACGVI~ 179 (179)
T COG2032 147 GRALVIHAGGDDYSTQP----EPLGGAGARVACGVIK 179 (179)
T ss_pred CeEEEEEcCCccccCCC----ccCCCCccceeeeeeC
Confidence 99999999999997421 2399999999999995
No 9
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=1.1e-35 Score=268.89 Aligned_cols=128 Identities=31% Similarity=0.527 Sum_probs=116.3
Q ss_pred ceeEEEEEcCCCceEEEEEEEecCCCcccccCCCCCCCCCCCCccccccCcccccceeeeeeccccEEEEEEEecCCCCe
Q 023621 82 AKKAVAVLKGTSNVEGVVTLTQEDGGLFSFTLSPPPPPPPFLGFCFGQFSGEFEASILVSFFGLSPTTVNVRVTGLTPGP 161 (279)
Q Consensus 82 ~~~Ava~l~g~~~v~G~v~~~q~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~glvr~~~~s~v~V~v~ItGLppG~ 161 (279)
..+|+|.++|. +|.|+|+|+|..++ .+.|+++|+||+||.
T Consensus 80 ~~~av~~~~g~-~v~G~v~~~~~~~~---------------------------------------~v~i~~~~~GL~pg~ 119 (238)
T PLN02957 80 VSAAVAEFKGP-DIFGVVRFAQVSME---------------------------------------LARIEAAFSGLSPGT 119 (238)
T ss_pred cceEEEEecCC-ceEEEEEEEEcCCC---------------------------------------CEEEEEEEcCCCCCc
Confidence 35689999986 69999999998776 489999999999999
Q ss_pred eeEEEeccCCCCCCCCCcCccccCCCCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeCCCCCCCccEEEEecC
Q 023621 162 HGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHEL 241 (279)
Q Consensus 162 HgfHIHE~GD~s~GC~SAGGHFNP~~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~G~~SIIGRSIVIHa~ 241 (279)
|+|||||+|||+++|.|+|+||||.++.|+ .+|+||||||.+|++|++++++.++.++|+ +|+|||||||++
T Consensus 120 hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h~GDLgni~~~~~G~a~~~~~~~~~~l~---~iiGrs~vih~~ 191 (238)
T PLN02957 120 HGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEPLGDLGTLEADENGEATFSGTKEKLKVW---DLIGRSLAVYAT 191 (238)
T ss_pred EEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCCCCccCCEEeCCCceEEEEEECCCcCcc---ccCCcEEEEEeC
Confidence 999999999999999999999999999998 689999999999999999999999988775 999999999999
Q ss_pred CCCCCCCCCCCcccCCCCCCeeEEEEEecc
Q 023621 242 EDDLGKGGHELSLTTGNAGGRLACGMHKKY 271 (279)
Q Consensus 242 ~DDlg~g~~e~S~~tGnAG~RIACGVI~~~ 271 (279)
+|+. +.+++||||.|+
T Consensus 192 ~D~~--------------~~~~~~gvi~rs 207 (238)
T PLN02957 192 ADKS--------------GPGIAAAVIARS 207 (238)
T ss_pred CCCC--------------CCCeEEEEEecc
Confidence 9863 235999999985
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.98 E-value=7.3e-33 Score=248.51 Aligned_cols=111 Identities=47% Similarity=0.847 Sum_probs=104.0
Q ss_pred cEEEEEEEecCCCCeeeEEEeccCCCCCCCCCcCccccCCCCCCCCCCCCCCCCCCCCceEEccCCeEEEEEEeceeeeC
Q 023621 147 PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCMSTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLD 226 (279)
Q Consensus 147 ~v~V~v~ItGLppG~HgfHIHE~GD~s~GC~SAGGHFNP~~~~HG~P~~~~rHaGDLGNI~ada~G~a~~s~~d~~lsL~ 226 (279)
.++|+++++||+||.|++|||||||.++||.|+|-||||+..+||+|.. |||||+.+|++|.+.+++.|..++.|
T Consensus 107 k~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~~-----gDLGn~~ad~nGraf~s~~de~Lkvw 181 (247)
T KOG4656|consen 107 KTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPNE-----GDLGNNRADKNGRAFFSAPDEKLKVW 181 (247)
T ss_pred cEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCCc-----ccccccccccCCcEEEecccccccHh
Confidence 4899999999999999999999999999999999999999999998863 99999999999999999999999999
Q ss_pred CCCCCCccEEEEecCCCCCCCCCCCCcccCCCCCCeeEEEEEeccc
Q 023621 227 GPNTVVGRAFVVHELEDDLGKGGHELSLTTGNAGGRLACGMHKKYL 272 (279)
Q Consensus 227 G~~SIIGRSIVIHa~~DDlg~g~~e~S~~tGnAG~RIACGVI~~~~ 272 (279)
++||||+||.+..||++ +++ ||+|.|++||||.|+-
T Consensus 182 ---dlIGRsvVi~k~~ddlg--g~p-----~nsge~la~gvIARSA 217 (247)
T KOG4656|consen 182 ---DLIGRSVVISKSLDDLG--GEP-----GNSGERLACGVIARSA 217 (247)
T ss_pred ---hhhceeEEEeccccccC--CCC-----CCcCcceeEEEeeecc
Confidence 99999999999999984 222 8999999999999864
No 11
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=77.25 E-value=1.8 Score=36.69 Aligned_cols=14 Identities=71% Similarity=0.945 Sum_probs=12.7
Q ss_pred CcccCCCCCCeeEE
Q 023621 252 LSLTTGNAGGRLAC 265 (279)
Q Consensus 252 ~S~~tGnAG~RIAC 265 (279)
.|..+|++|.|+||
T Consensus 131 ~sg~~~~~G~~~ac 144 (144)
T cd00305 131 LSGGTGNAGVRVAC 144 (144)
T ss_pred ccccceeeEeEEeC
Confidence 47889999999999
No 12
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=55.77 E-value=57 Score=26.24 Aligned_cols=23 Identities=26% Similarity=0.372 Sum_probs=17.8
Q ss_pred cEEEEEEEecCCCCeeeEEEecc
Q 023621 147 PTTVNVRVTGLTPGPHGFHLHEY 169 (279)
Q Consensus 147 ~v~V~v~ItGLppG~HgfHIHE~ 169 (279)
.+..++.++||..-.-..|||+-
T Consensus 33 ~l~y~i~~~gl~~~~~~~hih~~ 55 (118)
T smart00754 33 SLHYQVTLSGLSGPETAAHIHEG 55 (118)
T ss_pred EEEEEEEEcccCCCceeeeEecc
Confidence 47788899999863338999983
No 13
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=40.84 E-value=1.8e+02 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.567 Sum_probs=18.5
Q ss_pred cEEEEEEEecCCCCeeeEEEec
Q 023621 147 PTTVNVRVTGLTPGPHGFHLHE 168 (279)
Q Consensus 147 ~v~V~v~ItGLppG~HgfHIHE 168 (279)
.+.+++.++||....-..|||.
T Consensus 34 ~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 34 TLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred EEEEEEEEeCCCCCcEEEEEEc
Confidence 3678889999966678999998
No 14
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=22.88 E-value=88 Score=25.08 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=17.9
Q ss_pred EEEEEEEecCCCCeeeEEEecc
Q 023621 148 TTVNVRVTGLTPGPHGFHLHEY 169 (279)
Q Consensus 148 v~V~v~ItGLppG~HgfHIHE~ 169 (279)
..++..|.+.....|.||+|-+
T Consensus 42 ~~v~~~l~N~~~~~Hp~HlHG~ 63 (138)
T PF07731_consen 42 DVVEIVLQNNGSMPHPFHLHGH 63 (138)
T ss_dssp SEEEEEEEECTTSSEEEEETTS
T ss_pred CEEEEEEECCCCCccceEEEee
Confidence 4678888887778999999964
No 15
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=21.74 E-value=87 Score=21.98 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=15.0
Q ss_pred EEEEecCCCCeeeEEEecc
Q 023621 151 NVRVTGLTPGPHGFHLHEY 169 (279)
Q Consensus 151 ~v~ItGLppG~HgfHIHE~ 169 (279)
.++++.|+||.|-|+|...
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEEES--SEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 7888999999999999864
Done!