BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023622
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W6I0|UQCC_XENLA Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
OS=Xenopus laevis GN=uqcc PE=2 SV=1
Length = 200
Score = 66.2 bits (160), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 75/148 (50%), Gaps = 9/148 (6%)
Query: 106 IYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIY 165
+Y V ++D ++ +L T F + LH+W CL R+K+EG+ G + +Y+
Sbjct: 21 MYTCCVERIDYDEFFEKCSLPDTLNSWFLVTQLHVWMCLVRMKQEGRAGKYMCRYIVHSM 80
Query: 166 NHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSD 224
DVE R G++ + L M+ + +IFY I +D ++ + + L +WRN+
Sbjct: 81 WEDVEQRGKVMGIDSVTLKNSMRSMTEIFYAAIFGYDEGIISDDRI--LAAALWRNLL-- 136
Query: 225 DGSSKPDDAAVRAVQAMTRYVRRETKKL 252
+ + DD R ++ + YVR++ + L
Sbjct: 137 --NKQCDDP--RKLELLVEYVRKQVQFL 160
>sp|Q9CWU6|UQCC_MOUSE Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
OS=Mus musculus GN=Uqcc PE=2 SV=1
Length = 295
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 76/163 (46%), Gaps = 10/163 (6%)
Query: 91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150
L YSK I A +Y V + D + + TF F + +LH+W CL R+K+E
Sbjct: 102 LKYSKWKIKI-AALRMYTSCVEKTDFEEFFLRCQMPDTFNSWFLITLLHVWMCLVRMKQE 160
Query: 151 GKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAK 209
G+ G + + + DVE R GVN +L K M + FY I+ +D +L +
Sbjct: 161 GRTGKYMCRIIVHFMWEDVEQRGRVMGVNSYILKKNMALMTNNFYAAILGYDEGIL--SD 218
Query: 210 QDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
L +WR F + K +D R ++ + YVR++ + L
Sbjct: 219 DHGLAAALWRTFF----NQKCEDP--RQLELLVEYVRKQMQYL 255
>sp|Q9NVA1|UQCC_HUMAN Ubiquinol-cytochrome c reductase complex chaperone CBP3 homolog
OS=Homo sapiens GN=UQCC PE=1 SV=3
Length = 299
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 17/195 (8%)
Query: 64 LALALDSPLRVDEPKYEGIKRFILKLMLF-----YSKQSKSIRGANVIYKRVVSQVDKPA 118
L+ DSP V+E G I++ M F YSK I A +Y V + D
Sbjct: 76 LSTTKDSPQPVEEKV--GAFTKIIEAMGFTGPLKYSKWKIKI-AALRMYTSCVEKTDFEE 132
Query: 119 IYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGV 178
+ + TF F + +LH+W CL R+K+EG+ G + + + DV+ R GV
Sbjct: 133 FFLRCQMPDTFNSWFLITLLHVWMCLVRMKQEGRSGKYMCRIIVHFMWEDVQQRGRVMGV 192
Query: 179 N-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRA 237
N +L K M + FY I+ +D +L + L +WR F + K +D R
Sbjct: 193 NPYILKKNMILMTNHFYAAILGYDEGIL--SDDHGLAAALWRTFF----NRKCEDP--RH 244
Query: 238 VQAMTRYVRRETKKL 252
++ + YVR++ + L
Sbjct: 245 LELLVEYVRKQIQYL 259
>sp|Q9USK6|CBP3_SCHPO CBP3-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=cbp3 PE=3 SV=1
Length = 283
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 11/161 (6%)
Query: 120 YDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGK-EGVELGQYLYEIYNHDVEMRVSK--- 175
Y + TF+ F + LH+W R++ K E V Q L + D+E+R+ K
Sbjct: 127 YQKCEIPMTFQSWFQITQLHLWILHTRIRGLPKNEKVAFSQALTTRFFEDMELRIHKDYR 186
Query: 176 AGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAV 235
N + ++K+L + G I +D +L L +WRN+F +PD V
Sbjct: 187 INSNRISGMYLKDLFQQQTGAIFGYDQGML--GSDAVLATSVWRNLF----VGRPDVDLV 240
Query: 236 RAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLEGEAE 276
++ + +++R +L L ++ + H V E A+
Sbjct: 241 -ILETIVKFIRLNVYRLSCLSTDDFINGKGVHFVPPEESAQ 280
>sp|P21560|CBP3_YEAST Protein CBP3, mitochondrial OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CBP3 PE=1 SV=1
Length = 335
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 11/131 (8%)
Query: 119 IYDVFNLEKTFRMTFSLLVLHMWFCLRRLKE-EGKEGVELGQYLYEIYNHDVEMRV---S 174
Y+ L +TF F + VLH W R++ K G Q L + D+E+R+
Sbjct: 143 FYEDLKLPRTFSQWFQITVLHEWILFVRMRAMPFKYGRNYQQKLVDRTFSDIELRLFEEM 202
Query: 175 KAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAA 234
K + +++K+ G I A+D + L +WRN+F G K D
Sbjct: 203 KVNSGRIADQYLKDFNTQLRGAIFAYDEGFATD--DGTLATAVWRNLF---GGRKNIDMV 257
Query: 235 VRAVQAMTRYV 245
++++ RY+
Sbjct: 258 --HLESVVRYI 266
>sp|D2Y242|H8A03_HAPHA Hainantoxin-VIII.3 OS=Haplopelma hainanum PE=1 SV=1
Length = 87
Score = 32.7 bits (73), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 193 FYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
F G ++ F PE+++ E + +IF+ D K ++ + Y+R +KL
Sbjct: 12 FAGLVLLFVVCYAPESEEKEFPKEMLSSIFAVDNDFKQEE------RDCAGYMRECKEKL 65
Query: 253 CFLGISCSLHWR 264
C G CS W+
Sbjct: 66 CCSGYVCSSRWK 77
>sp|D2Y2N6|H8P01_HAPHA Hainantoxin-VIII-16 OS=Haplopelma hainanum PE=3 SV=1
Length = 87
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 193 FYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKL 252
F G ++ F E+++ E + +IF+ D SK ++ + Y+R +KL
Sbjct: 12 FAGLVLLFVVCYASESEEKEFPKEMLSSIFAVDNDSKQEE------RDCVGYMRECKEKL 65
Query: 253 CFLGISCSLHWR 264
C G CS W+
Sbjct: 66 CCSGYVCSSRWK 77
>sp|O26803|GATE_METTH Glutamyl-tRNA(Gln) amidotransferase subunit E
OS=Methanothermobacter thermautotrophicus (strain ATCC
29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H)
GN=gatE PE=1 SV=1
Length = 619
Score = 32.0 bits (71), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 35 AAASVEPAPRPTKQPVVSLDKMFWSK-PAS--LALALDSPL-RVDEPKYEGIKRFILKLM 90
A +++ P T++ + + + P S + L D PL R+++ EGI+R + +L
Sbjct: 388 AEMAIQGVPEETRKALPDGNTQYLRPLPTSSRMYLETDIPLFRIEDDLLEGIRRNLPEL- 446
Query: 91 LFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEE 150
S++ + I + + + SQ+ K + D F FR+ +++ + + LR L+ E
Sbjct: 447 --PSEKKERIMRDYGLSEDLASQLVKRNLVDEFEALTEFRVDTTVIASLLAYTLRELRRE 504
Query: 151 GKEGVELG 158
G + LG
Sbjct: 505 GHDVDGLG 512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,607,830
Number of Sequences: 539616
Number of extensions: 3891418
Number of successful extensions: 9967
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 9961
Number of HSP's gapped (non-prelim): 15
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)