Query 023622
Match_columns 279
No_of_seqs 142 out of 288
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:25:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2873 Ubiquinol cytochrome c 100.0 9.6E-55 2.1E-59 397.5 15.7 258 2-272 1-276 (284)
2 COG5452 Uncharacterized conser 100.0 4.2E-41 9.1E-46 287.1 16.5 173 90-270 3-177 (180)
3 PF03981 Ubiq_cyt_C_chap: Ubiq 100.0 4.8E-38 1E-42 261.8 14.9 140 121-267 1-141 (141)
4 PF01152 Bac_globin: Bacterial 55.9 54 0.0012 26.1 6.7 68 118-198 48-118 (120)
5 PF10660 MitoNEET_N: Iron-cont 52.1 4.8 0.0001 30.4 0.0 22 116-137 12-33 (64)
6 PF11711 Tim54: Inner membrane 34.8 39 0.00084 33.6 3.3 43 73-115 287-329 (382)
7 PF10923 DUF2791: P-loop Domai 30.8 2.3E+02 0.005 28.5 8.0 64 159-224 121-200 (416)
8 COG4318 Uncharacterized protei 20.1 2.1E+02 0.0045 26.3 4.9 110 116-227 59-185 (221)
9 PF10440 WIYLD: Ubiquitin-bind 19.1 1.5E+02 0.0033 22.4 3.3 43 171-218 16-59 (65)
10 PF02281 Dimer_Tnp_Tn5: Transp 19.0 3E+02 0.0065 22.9 5.2 59 71-151 47-106 (109)
No 1
>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]
Probab=100.00 E-value=9.6e-55 Score=397.54 Aligned_cols=258 Identities=39% Similarity=0.597 Sum_probs=220.2
Q ss_pred chhHHHhhhhhccccccchhhhhhhhHHHHHHhhhcccCC----CCC----------CC-CCCccccccccccCCccccc
Q 023622 2 LPRWCRAVRSLNSITQRNDFHAISRQSYAMATAAAASVEP----APR----------PT-KQPVVSLDKMFWSKPASLAL 66 (279)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------~~-~~~~~~~~~~~~~kp~s~~~ 66 (279)
++|.+|.+....+|.+ +.+...+......+.-+ |.++| .|- ++ .+=.+++++++|++|||++.
T Consensus 1 Ms~~~~v~~~~~~~~~-tp~~s~~~y~~~t~~~~-~~p~~~l~~spc~~~~~~pV~e~q~~~l~~~~d~~k~~~P~~~~~ 78 (284)
T KOG2873|consen 1 MSRLRRVLRLTPKLRR-TPVGSMKIYSHFTRYFG-ASPSPLLNSSPCECSGLTPVFEPQNLPLSVNLDSMKWSPPCSLAA 78 (284)
T ss_pred CchhHHhhccCcceee-ccccccccccccccccc-CCChhhhccCccccccCCcccccccccccccccccccCCCcchhh
Confidence 3678888888999988 66666655544444422 22211 010 00 02234888999999999999
Q ss_pred cCCCCCCCCCcchhhHHHHHHHHhhcccCCchhhhhHHHHHHHHHHhcCchhhHhhhCCCCchhhHHHHHHHHHHHHHHH
Q 023622 67 ALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRR 146 (279)
Q Consensus 67 ~~~s~~~~~e~~~~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~wF~m~~LHvWLll~R 146 (279)
..+.+.++-||...|+++++.+..-+|.. .+++.++|..|+++.+.+.||++|+|||||++||+||+||+|||++|
T Consensus 79 ~~~~~~ri~~~d~~gf~~~~~~~s~~y~~----~~as~~~y~~~~~~~df~~fy~~f~Lp~TF~sWf~iT~LH~W~ll~R 154 (284)
T KOG2873|consen 79 KGGLPLRIDEPDKVGFRRFILTGSMKYKI----QSASIQIYKDCIAQVDFEAFYEDFNLPDTFSSWFQITVLHVWLLLMR 154 (284)
T ss_pred ccCceeeeccccccceeeccchhHHHHHH----HHHHHHHHhhhhhhccHHHHHHHcCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888765554 33455699999999999999999999999999999999999999999
Q ss_pred HhhcCc-chhhHHHHHHHHHHHHHHHHHHHhc-cc-hhhhHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHhhcc
Q 023622 147 LKEEGK-EGVELGQYLYEIYNHDVEMRVSKAG-VN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFS 223 (279)
Q Consensus 147 Lr~eg~-~g~~l~Q~L~D~ff~DvE~rlRe~G-V~-~~v~K~mK~L~~~fyG~~~AYDeaL~~~d~d~~LAaALWRNvf~ 223 (279)
||+||. +|+.++|.|++.||+|||.|++++| || ...+++||+|.++|||+++|||||+.++ |.+||.|||||+|+
T Consensus 155 l~~eg~~~g~~l~q~lv~~mw~DvelR~~k~gkvN~~r~~~~mk~l~~qf~gaifaYDeG~l~d--D~vLA~alWRnlF~ 232 (284)
T KOG2873|consen 155 LKAEGQGEGVDLQQYLVERMWEDVELRLSKAGKVNSLRTKQYMKDLERQFYGAIFAYDEGFLSD--DRVLATALWRNLFS 232 (284)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhccccccc--chHHHHHHHHHHhC
Confidence 999997 8999999999999999999999999 99 4566699999999999999999999976 58999999999999
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCcccccccccceeeccc
Q 023622 224 DDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHHLVRLE 272 (279)
Q Consensus 224 ~~~~~~p~~~d~~~l~~La~YVR~ql~~L~~~~~~~vl~g~i~~~~~~~ 272 (279)
+++ ++|+.+++.+|+|||+|+..|+.+++++++.|...+|+++-
T Consensus 233 ~r~-----~~D~~hle~vV~YvR~qv~~Ls~l~t~dfivg~~v~f~pl~ 276 (284)
T KOG2873|consen 233 GRG-----NVDLVHLEAVVRYVRSQVYSLSSLSTDDFIVGGPVLFVPLQ 276 (284)
T ss_pred CCC-----CcCHHHHHHHHHHHHHHHHHHhccChhhhhccCceeeccCC
Confidence 985 35789999999999999999999999999999999999993
No 2
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.2e-41 Score=287.13 Aligned_cols=173 Identities=24% Similarity=0.358 Sum_probs=158.7
Q ss_pred hhcccCCch-hhhhHHHHHHHHHHhcCchhhHhhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHH
Q 023622 90 MLFYSKQSK-SIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHD 168 (279)
Q Consensus 90 ~gf~sk~s~-~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~D 168 (279)
++.|.|++. +...+.++|..+|+++|+|.||.++|||||..|||+|+.|||.++++|+|.+|+.+.+++|+|+|.||.|
T Consensus 3 ~~lf~k~~~an~Ai~krlYa~~vaaARq~~fY~d~~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~Daff~d 82 (180)
T COG5452 3 LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIVDAFFKD 82 (180)
T ss_pred hHHhcCCCchhHHHHHHHHHHHHHHHhchhHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 344567774 5666788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccc-hhhhHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHH
Q 023622 169 VEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRR 247 (279)
Q Consensus 169 vE~rlRe~GV~-~~v~K~mK~L~~~fyG~~~AYDeaL~~~d~d~~LAaALWRNvf~~~~~~~p~~~d~~~l~~La~YVR~ 247 (279)
+|+++||+||+ ..|+|+||||+.+||||+.+||.||... |..+|++||-||++.+.+ ++.....|+.||.+
T Consensus 83 vDhs~RElGigD~gVpKrMKKlAgmFYGRl~aY~aAld~~-d~~alaaal~Rn~~pd~~-------~~p~a~~La~yv~~ 154 (180)
T COG5452 83 VDHSLRELGIGDQGVPKRMKKLAGMFYGRLEAYDAALDGN-DATALAAALARNIRPDVE-------DWPEAAGLATYVLK 154 (180)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHhcccccc-------ccchhHHHHHHHHH
Confidence 99999999998 8999999999999999999999999876 468999999999997655 34568999999999
Q ss_pred HHHhhhccCcccccccccceeec
Q 023622 248 ETKKLCFLGISCSLHWRIHHLVR 270 (279)
Q Consensus 248 ql~~L~~~~~~~vl~g~i~~~~~ 270 (279)
.-.+|..+|++.|.+|++++-.|
T Consensus 155 ~~~~Laaq~~eal~~G~~t~p~p 177 (180)
T COG5452 155 VRDALAAQPEEALATGDLTWPLP 177 (180)
T ss_pred HHHHHHcCcHHHHHhCceeecCC
Confidence 99999999999999999987544
No 3
>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase. It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.
Probab=100.00 E-value=4.8e-38 Score=261.84 Aligned_cols=140 Identities=36% Similarity=0.587 Sum_probs=131.6
Q ss_pred hhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccc-hhhhHHHHHHHHHHHHHHHH
Q 023622 121 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVA 199 (279)
Q Consensus 121 ~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~-~~v~K~mK~L~~~fyG~~~A 199 (279)
++||+||||++||+++.||+||+++|||.++++|+.+.|.|+|.||+|+|.+||++||+ ..++|+||+|.++|||++.+
T Consensus 1 ~~~~~~dt~~~~f~~~~lh~~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~~a 80 (141)
T PF03981_consen 1 EHFGVPDTFAGRFQMLGLHVWLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMGVGDLSVGKRMKKLQEQFYGRLLA 80 (141)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999998899999999999999999999999997 88899999999999999999
Q ss_pred HHHhhCCCCChHHHHHHHHHhhccCCCCCCCChhHHHHHHHHHHHHHHHHHhhhccCcccccccccce
Q 023622 200 FDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRRETKKLCFLGISCSLHWRIHH 267 (279)
Q Consensus 200 YDeaL~~~d~d~~LAaALWRNvf~~~~~~~p~~~d~~~l~~La~YVR~ql~~L~~~~~~~vl~g~i~~ 267 (279)
||+|+.. ++.+||+|||||+|.+..+ .++.+++.|++|||+++.+|+.+|.++++.|.+.+
T Consensus 81 yd~al~~--~~~~La~al~rnv~~~~~~-----~~~~~~~~l~~yv~~~~~~l~~~~~~~~~~g~~~~ 141 (141)
T PF03981_consen 81 YDEALGS--DDAALAAALWRNVFGGREE-----RDPAQLAGLAGYVRRQLWHLDDLPDPAYLVGIPRF 141 (141)
T ss_pred HHHHhcc--CHHHHHHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHHHHCCCHHHHHhCCCCC
Confidence 9999986 4799999999999998732 35679999999999999999999999999998864
No 4
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=55.88 E-value=54 Score=26.07 Aligned_cols=68 Identities=9% Similarity=0.036 Sum_probs=46.4
Q ss_pred hhHhhhCCCCchhhHH---HHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHH
Q 023622 118 AIYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFY 194 (279)
Q Consensus 118 ~fY~~~glpDTF~~wF---~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~~~fy 194 (279)
.|...+|=|..+.++. .|...|. +-.+...-||.+-..+...|.++||+....+.+....+.+.
T Consensus 48 fl~~~~GGp~~Y~~~~G~p~m~~~H~-------------~l~it~~~f~~~~~~~~~al~~~~v~~~~~~~~~~~~~~~~ 114 (120)
T PF01152_consen 48 FLSQLLGGPPLYTGRDGHPMMREAHA-------------HLGITEEHFDRWLELLKQALDELGVPEELIDELLARLESLR 114 (120)
T ss_dssp HHHHHTTSSSHHHHHHSSH-HHHHHT-------------TS-BBHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcccCCCchHHHHHh-------------CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4456677777776654 2555554 34577788999999999999999998555555555555555
Q ss_pred HHHH
Q 023622 195 GNIV 198 (279)
Q Consensus 195 G~~~ 198 (279)
+.++
T Consensus 115 ~~i~ 118 (120)
T PF01152_consen 115 DDIV 118 (120)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5443
No 5
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=52.09 E-value=4.8 Score=30.37 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred chhhHhhhCCCCchhhHHHHHH
Q 023622 116 KPAIYDVFNLEKTFRMTFSLLV 137 (279)
Q Consensus 116 ~p~fY~~~glpDTF~~wF~m~~ 137 (279)
=|.+.+.+-+||||.|||.+..
T Consensus 12 lP~YL~~lPiP~s~gg~f~Ls~ 33 (64)
T PF10660_consen 12 LPNYLKSLPIPDSFGGFFKLSV 33 (64)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccH
Confidence 4777889999999999998654
No 6
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=34.77 E-value=39 Score=33.65 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=37.1
Q ss_pred CCCCcchhhHHHHHHHHhhcccCCchhhhhHHHHHHHHHHhcC
Q 023622 73 RVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVD 115 (279)
Q Consensus 73 ~~~e~~~~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar 115 (279)
.+.-|+..||..+..+|..||+++......++..+..|.+++|
T Consensus 287 ~ipfp~llGF~n~P~RiyRFfnrR~~ad~~g~~~aaiVl~~~R 329 (382)
T PF11711_consen 287 PIPFPHLLGFLNTPRRIYRFFNRRYLADDIGEEVAAIVLAQTR 329 (382)
T ss_pred EecCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 4566778999999999999999999888888888888888844
No 7
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=30.77 E-value=2.3e+02 Score=28.52 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhc-c----------chhhhHHHHHHHHH-----HHHHHHHHHHhhCCCCChHHHHHHHHHhhc
Q 023622 159 QYLYEIYNHDVEMRVSKAG-V----------NLLLSKWMKELEKI-----FYGNIVAFDAALLPEAKQDELQNVIWRNIF 222 (279)
Q Consensus 159 Q~L~D~ff~DvE~rlRe~G-V----------~~~v~K~mK~L~~~-----fyG~~~AYDeaL~~~d~d~~LAaALWRNvf 222 (279)
+.++|.++..++..+.+.| + ...+.++|..+.+. |--.+.+|=.|...+ |.+++++++|=+-
T Consensus 121 ~~ild~wi~~~~~~~~~~~~~~~~~~~~~~v~~~I~~~L~~l~~~~~~~~Fa~~l~~Y~~a~~~g--d~~~~~~~l~WL~ 198 (416)
T PF10923_consen 121 RSILDRWIYNLEEEVAAEGGIEPDEGFEEAVEELIEERLASLSELVHGPDFAAALRAYYRAYVEG--DEELADAALRWLR 198 (416)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHcccCChhHHHHHHHHHHHHhcC--CHHHHHHHHHHHc
Confidence 3455555555555555433 1 12445555666555 777788899998866 5899999999875
Q ss_pred cC
Q 023622 223 SD 224 (279)
Q Consensus 223 ~~ 224 (279)
++
T Consensus 199 Ge 200 (416)
T PF10923_consen 199 GE 200 (416)
T ss_pred CC
Confidence 43
No 8
>COG4318 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.05 E-value=2.1e+02 Score=26.30 Aligned_cols=110 Identities=16% Similarity=0.202 Sum_probs=79.0
Q ss_pred chhhHhhhCCCCch--hhHHHHHHHHHHHHHHHHhhcCcch-----hhHHHHHHHHHHHHHHHHHHH-----hccc---h
Q 023622 116 KPAIYDVFNLEKTF--RMTFSLLVLHMWFCLRRLKEEGKEG-----VELGQYLYEIYNHDVEMRVSK-----AGVN---L 180 (279)
Q Consensus 116 ~p~fY~~~glpDTF--~~wF~m~~LHvWLll~RLr~eg~~g-----~~l~Q~L~D~ff~DvE~rlRe-----~GV~---~ 180 (279)
...|....-||--. .+||.+|-=|= |...=++...+.| ..+++.--|.||+-||++... .|+. .
T Consensus 59 ~~~fl~kh~iPvVlGPggr~YltDhHH-L~~Al~~~gvk~g~~~~va~~s~~~~D~Fw~~md~n~wv~p~Da~G~r~~~~ 137 (221)
T COG4318 59 GEAFLGKHEIPVVLGPGGRFYLTDHHH-LSRALLREGVKQGLPVVVADLSPLAKDDFWEVMDENHWVHPFDARGARRPYE 137 (221)
T ss_pred HHHHhhcCCCCeEeCCCCceeeechHH-HHHHHHHhCcccceeEEEecccccchHHHHHHhhccCcccccccccccCChh
Confidence 34566677777543 68999887664 3333333333433 357888889999999999775 4774 5
Q ss_pred hhhHHHHHHHHHHHHHHHHH--HHhhCCCCChHHHHHHHHHhhccCCCC
Q 023622 181 LLSKWMKELEKIFYGNIVAF--DAALLPEAKQDELQNVIWRNIFSDDGS 227 (279)
Q Consensus 181 ~v~K~mK~L~~~fyG~~~AY--DeaL~~~d~d~~LAaALWRNvf~~~~~ 227 (279)
.++|.+.+|..-=|-.+.+| |+|=-.- +....++-.|-.+|..+-+
T Consensus 138 aiPk~l~~L~DDPyRslAGy~rdaggfdK-~~t~FsEF~WAdffrrri~ 185 (221)
T COG4318 138 AIPKALAGLGDDPYRSLAGYLRDAGGFDK-DQTPFSEFHWADFFRRRID 185 (221)
T ss_pred hhhHHHHhccCChHHHHHHHHHHccCccc-CcchHHHHHHHHHHHhhCC
Confidence 89999999999999999999 4433222 3578999999999987753
No 9
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=19.05 E-value=1.5e+02 Score=22.38 Aligned_cols=43 Identities=23% Similarity=0.341 Sum_probs=29.2
Q ss_pred HHHHHhccc-hhhhHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 023622 171 MRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIW 218 (279)
Q Consensus 171 ~rlRe~GV~-~~v~K~mK~L~~~fyG~~~AYDeaL~~~d~d~~LAaALW 218 (279)
..|+.+|+. ..|..-+++|.+.|-|. --+..+|.=.+|++||.
T Consensus 16 dam~~lG~~~~~v~~vl~~LL~lY~~n-----W~lIEed~Y~~L~dai~ 59 (65)
T PF10440_consen 16 DAMRQLGFSKKQVRPVLKNLLKLYDGN-----WELIEEDNYRVLADAIF 59 (65)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHcCC-----chhhhcccHHHHHHHHH
Confidence 467889997 78888899998877433 33444433357777763
No 10
>PF02281 Dimer_Tnp_Tn5: Transposase Tn5 dimerisation domain; InterPro: IPR003201 Transposons are mobile DNA sequences capable of replication and insertion into the chromosome. Typically transposons code for the transposase enzyme, which catalyses insertion, found between terminal inverted repeats []. Tn5 has a unique method of self- regulation in which a truncated version of the transposase enzyme acts as an inhibitor []. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 3ECP_A 4DM0_A 1MUS_A 1MUH_A 1MM8_A 1B7E_A.
Probab=18.99 E-value=3e+02 Score=22.90 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=35.0
Q ss_pred CCCCCCcchhhHHHHHHHHhhcccCCchhhhhHHHHHHHHHHhcCchhhHhhhCCCCchhhHHHHHHH-HHHHHHHHHhh
Q 023622 71 PLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVL-HMWFCLRRLKE 149 (279)
Q Consensus 71 ~~~~~e~~~~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~wF~m~~L-HvWLll~RLr~ 149 (279)
+.|.+.|+..=..++|.||-||..++++-.-....|++ |||.+-.+ --|-+.+=|.+
T Consensus 47 ~~p~~~Psl~wA~~~IAkLGGfldrKrdG~pG~~tLW~----------------------GW~rLq~lveGy~lA~~~~a 104 (109)
T PF02281_consen 47 PLPEKAPSLKWAYRWIAKLGGFLDRKRDGEPGWKTLWR----------------------GWFRLQDLVEGYRLAKSLMA 104 (109)
T ss_dssp STTSTTTBHHHHHHHHHHHTT---TTSSS---HHHHHH----------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHcCccccCCCCCCchhhHHH----------------------HHHHHHHHHHHHHHHHHHHH
Confidence 34445565444567999999999999988887888876 78876544 34555555554
Q ss_pred cC
Q 023622 150 EG 151 (279)
Q Consensus 150 eg 151 (279)
.|
T Consensus 105 ~g 106 (109)
T PF02281_consen 105 DG 106 (109)
T ss_dssp TT
T ss_pred hc
Confidence 44
Done!