Query 023622
Match_columns 279
No_of_seqs 142 out of 288
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 09:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u66_A SCIP/TSSL, putative typ 40.5 1.4E+02 0.0047 25.2 8.7 65 136-207 12-78 (183)
2 2bmm_A Thermostable hemoglobin 33.6 43 0.0015 25.6 4.1 57 119-188 50-109 (123)
3 1dly_A Hemoglobin; oxygen stor 32.2 52 0.0018 27.3 4.6 60 118-191 91-152 (164)
4 2ksc_A Cyanoglobin; hemeprotei 31.2 1E+02 0.0035 23.6 5.9 63 118-190 49-111 (123)
5 1ux8_A YJBI protein; oxygen st 22.7 1.7E+02 0.0057 22.7 5.8 60 118-190 52-114 (132)
6 2bkm_A Truncated hemoglobin fr 22.5 1.7E+02 0.0058 22.4 5.8 57 119-188 52-111 (128)
7 2qrw_A Hemoglobin-like protein 19.5 96 0.0033 23.9 3.7 59 118-189 51-115 (128)
8 2xyk_A 2-ON-2 hemoglobin; oxyg 18.5 2.4E+02 0.0082 22.0 5.9 60 118-190 56-118 (133)
9 2r25_A Phosphorelay intermedia 18.0 2.9E+02 0.01 23.2 6.6 46 155-200 25-73 (167)
10 2gkm_A TRHBN, hemoglobin-like 17.6 86 0.0029 24.6 3.0 66 118-197 61-126 (136)
No 1
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=40.52 E-value=1.4e+02 Score=25.21 Aligned_cols=65 Identities=15% Similarity=0.303 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhcCc--chhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHhhCCC
Q 023622 136 LVLHMWFCLRRLKEEGK--EGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPE 207 (279)
Q Consensus 136 ~~LHvWLll~RLr~eg~--~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~~~fyG~~~AYDeaL~~~ 207 (279)
+..-+|+++.+||.... ++..+.+.+. ....++|..+++.|+. -..+...-|.-|..-||++...
T Consensus 12 l~~~~l~lv~~Lr~~~~~~d~~~lr~~~~-~~i~~~e~~~~~~g~~------~~~i~~a~YalCa~lDE~vl~~ 78 (183)
T 3u66_A 12 IFYPGWLMVSQLRSGQPVEDGKALYRRAC-QLVKQAREELAEAGFS------QKSSDIMLYAFCALLDESVLNR 78 (183)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHH-HHHHHHHHHHHHTTCC------HHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHH-HHHHHHHHHHHHCCCC------HHHHHHhHHHHHHHHHHHHhcC
Confidence 45567999999998873 4556666644 4567889999999994 3456678899999999999854
No 2
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=33.57 E-value=43 Score=25.64 Aligned_cols=57 Identities=12% Similarity=0.142 Sum_probs=37.9
Q ss_pred hHhhhCCCCchhhHH---HHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 023622 119 IYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKE 188 (279)
Q Consensus 119 fY~~~glpDTF~~wF---~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~ 188 (279)
|-..+|=|+++.+++ .|..-|+ +-.+..+-||.+...+...|.+.|++..+...+.+
T Consensus 50 l~~~~gGp~~Y~~~~g~p~l~~~H~-------------~~~I~~~~f~~wl~~~~~al~e~~~~~~~~~~~~~ 109 (123)
T 2bmm_A 50 LMQYWGGPRTYSERRGHPRLRMRHF-------------PYRIGAEERDRWLTHMRAAVDDLALPAHLEQQLWE 109 (123)
T ss_dssp HHHHHTSCCHHHHHSCCCCHHHHTT-------------TSCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHcCCCcccCCCCCChhHHHccC-------------CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345566666666665 3444454 23477888999999999999999987433333333
No 3
>1dly_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.80A {Chlamydomonas eugametos} SCOP: a.1.1.1 PDB: 1uvx_A*
Probab=32.25 E-value=52 Score=27.26 Aligned_cols=60 Identities=7% Similarity=0.024 Sum_probs=39.2
Q ss_pred hhHhhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchh--hHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHH
Q 023622 118 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGV--ELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEK 191 (279)
Q Consensus 118 ~fY~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~--~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~~ 191 (279)
+|-.-+|=|+++.++ .|-.-|. +- .+...-||.+...+...|.+.|++......+....+
T Consensus 91 Fl~~~lGGp~~Y~g~-~m~~~H~-------------~l~~~I~~~~fd~Wl~~~~~aL~e~~~~~~~~~~l~~~l~ 152 (164)
T 1dly_A 91 FLAYALGGASEWKGK-DMRTAHK-------------DLVPHLSDVHFQAVARHLSDTLTELGVPPEDITDAMAVVA 152 (164)
T ss_dssp HHHHHTTSSSCCCSC-CHHHHHT-------------TCSSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCcC-cHHHHHH-------------hhcCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444566777777776 3444443 22 477888999999999999999987443334433333
No 4
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=31.18 E-value=1e+02 Score=23.56 Aligned_cols=63 Identities=11% Similarity=0.075 Sum_probs=42.5
Q ss_pred hhHhhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 023622 118 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELE 190 (279)
Q Consensus 118 ~fY~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~ 190 (279)
.|..-+|=|+++.++ .|-.-|.=+.- +..+...-||.+...+...|.+.|++......+-...
T Consensus 49 Fl~~~~GGp~~Y~g~-~m~~~H~~~~~---------~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~l~~~~ 111 (123)
T 2ksc_A 49 FMTYAFGGTDRFPGR-SMRAAHQDLVE---------NAGLTDVHFDAIAENLVLTLQELNVSQDLIDEVVTIV 111 (123)
T ss_dssp HHHHHTTCTTSCCST-HHHHHHHHHHH---------HSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCC-CHHHHHHhhcc---------cCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 455677888888887 45556652211 2247788999999999999999999744344443333
No 5
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=22.68 E-value=1.7e+02 Score=22.73 Aligned_cols=60 Identities=5% Similarity=0.013 Sum_probs=38.4
Q ss_pred hhHhhhCCCCchhhHH---HHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 023622 118 AIYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELE 190 (279)
Q Consensus 118 ~fY~~~glpDTF~~wF---~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~ 190 (279)
+|...+|=|+++.+++ .|-.-|. +-.+...-||.+...+...|.+.|+...+...+....
T Consensus 52 Fl~~~~GGp~~Y~~~~G~p~l~~~H~-------------~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~~~ 114 (132)
T 1ux8_A 52 FLTQYLGGPPLYTEEHGHPMLRARHL-------------PFPITNERADAWLSCMKDAMDHVGLEGEIREFLFGRL 114 (132)
T ss_dssp HHHHHTTSCCHHHHHHCCCCHHHHHT-------------TSCCCHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHhCCCcccccccCChhHHHhhc-------------CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3345666666666554 3444454 2247788899999999999999998743344443333
No 6
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=22.51 E-value=1.7e+02 Score=22.40 Aligned_cols=57 Identities=9% Similarity=0.048 Sum_probs=36.3
Q ss_pred hHhhhCCCCchhhHH---HHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 023622 119 IYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKE 188 (279)
Q Consensus 119 fY~~~glpDTF~~wF---~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~ 188 (279)
|-..+|=|+++.+++ .|-.-|+ +-.+...-||.+...+...|.+.|++..+...+..
T Consensus 52 l~~~~GGp~~Y~~~~G~p~l~~~H~-------------~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~~~~ 111 (128)
T 2bkm_A 52 LTQYLGGPPLYTAEHGHPMLRARHL-------------RFEITPKRAEAWLACMRAAMDEIGLSGPAREQFYH 111 (128)
T ss_dssp HHHHTTSCCHHHHHHCCCCHHHHHT-------------TSCCCHHHHHHHHHHHHHHHHHTTCCSHHHHHHHH
T ss_pred HHHHcCCCCccccccCCccHHHhhc-------------CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 334556666665554 3444444 22477888999999999999999986433333333
No 7
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=19.54 E-value=96 Score=23.88 Aligned_cols=59 Identities=7% Similarity=0.031 Sum_probs=39.2
Q ss_pred hhHhhhCCCCchhhHH---HHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHH---HHhccchhhhHHHHHH
Q 023622 118 AIYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRV---SKAGVNLLLSKWMKEL 189 (279)
Q Consensus 118 ~fY~~~glpDTF~~wF---~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rl---Re~GV~~~v~K~mK~L 189 (279)
.|-..+|=|+++.+++ .|..-|+ +-.+..+-||.+...+...| .+.|++..+...+...
T Consensus 51 fl~~~~GGp~~Y~~~~G~p~m~~~H~-------------~~~I~~~~f~~wl~~~~~al~~~~e~~~~~~~~~~~~~~ 115 (128)
T 2qrw_A 51 FLEQYWGGPRTYSEQRGHPRLRMRHA-------------PFRISLIERDAFLRCMHTAVASIDSETLDDEHRRELLDY 115 (128)
T ss_dssp HHHHHTTSCCHHHHHHCSCCHHHHHT-------------TSCCCHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHH
T ss_pred HHHHHhCCCcccccCcCChhHHHhhc-------------CCCcCHHHHHHHHHHHHHHHhHHHHcCCCHHHHHHHHHH
Confidence 4446677777777765 3555554 22477888999999999999 8888864333333333
No 8
>2xyk_A 2-ON-2 hemoglobin; oxygen storage-transport complex; HET: HEM; 2.10A {Agrobacterium tumefaciens}
Probab=18.45 E-value=2.4e+02 Score=21.98 Aligned_cols=60 Identities=8% Similarity=-0.062 Sum_probs=40.3
Q ss_pred hhHhhhCCCCchhhHH---HHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q 023622 118 AIYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELE 190 (279)
Q Consensus 118 ~fY~~~glpDTF~~wF---~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~ 190 (279)
+|...+|=|.++..++ .|..-|. +-.+...-||..-..+...|.+.|++..+...+....
T Consensus 56 Fl~~~lGGp~~Y~~~~g~p~m~~~H~-------------~~~I~~~~fd~Wl~~~~~al~e~~~~~~~~~~l~~~~ 118 (133)
T 2xyk_A 56 YLTGYLGGPPVYVEKHGHPMLRRRHF-------------VAPIGPAERDEWLLCFRRAMDETIENAKLREIIWAPV 118 (133)
T ss_dssp HHHHHTTSCCHHHHHHCSCCHHHHHT-------------TSCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred HHHHHcCcCcccccCCCCcCHHHhhc-------------CCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4456677777775544 3445553 2247788999999999999999999744444444433
No 9
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=18.01 E-value=2.9e+02 Score=23.15 Aligned_cols=46 Identities=9% Similarity=0.082 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc--c-hhhhHHHHHHHHHHHHHHHHH
Q 023622 155 VELGQYLYEIYNHDVEMRVSKAGV--N-LLLSKWMKELEKIFYGNIVAF 200 (279)
Q Consensus 155 ~~l~Q~L~D~ff~DvE~rlRe~GV--~-~~v~K~mK~L~~~fyG~~~AY 200 (279)
..+.+.|+..||+|.+.++..|.- . ..=-+.+..++-++-|....+
T Consensus 25 p~Fv~elV~~F~edse~~l~~L~~AL~~~~D~~~L~~~aH~LKGSSAnL 73 (167)
T 2r25_A 25 SDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAAL 73 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhcccCHHHHHHHHHhhhhhHHHH
Confidence 679999999999999999998643 2 222367888888888888774
No 10
>2gkm_A TRHBN, hemoglobin-like protein HBN, flavohemoglobin; truncated hemoglobin, mutant, oxygen storage/transport complex; HET: HEM; 1.73A {Mycobacterium tuberculosis} PDB: 1idr_A* 1rte_A* 1s56_A* 1s61_A* 2gl3_A* 2gln_A* 2gkn_A*
Probab=17.62 E-value=86 Score=24.57 Aligned_cols=66 Identities=8% Similarity=0.040 Sum_probs=40.2
Q ss_pred hhHhhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Q 023622 118 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNI 197 (279)
Q Consensus 118 ~fY~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~~~fyG~~ 197 (279)
+|...+|=|+++.++ .|-.-|. +-.+..+-||.+...+...|.+.|++..+...+.+..+.....+
T Consensus 61 Fl~~~~GGp~~Y~g~-~m~~~H~-------------~~~I~~~~fd~wl~~l~~al~e~~~~~~~~~~~~~~~~~~a~~~ 126 (136)
T 2gkm_A 61 FFAAALGGPEPYTGA-PMKQVHQ-------------GRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDV 126 (136)
T ss_dssp HHHHHTTCSSCCCSC-CHHHHHT-------------TSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHH
T ss_pred HHHHHHCCCCCCCCC-CHHHHHc-------------CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 344556666666665 2223332 22477888999999999999999987444444444443333333
Done!