Query 023622
Match_columns 279
No_of_seqs 142 out of 288
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 09:58:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlwa_ a.1.1.1 (A:) Protozoan 38.2 11 0.00083 26.8 3.3 43 154-196 70-112 (116)
2 d1ngna_ a.96.1.2 (A:) Mismatch 21.1 1.5E+02 0.011 21.8 7.5 69 80-193 19-87 (144)
3 d1idra_ a.1.1.1 (A:) Protozoan 20.0 33 0.0024 24.7 3.0 26 156-181 84-109 (127)
4 d2r25a1 a.24.10.2 (A:2-167) Ph 19.0 69 0.005 24.3 4.9 31 147-177 16-46 (166)
5 d1ux8a_ a.1.1.1 (A:) Protozoan 13.3 1.9E+02 0.014 19.8 5.9 35 154-188 73-107 (119)
6 d1dlya_ a.1.1.1 (A:) Protozoan 11.2 92 0.0067 21.4 3.4 40 156-195 74-113 (121)
7 d1b8da_ a.1.1.3 (A:) Phycoeryt 10.4 87 0.0064 24.1 3.2 66 87-176 25-93 (164)
8 d1ntca_ a.4.1.12 (A:) DNA-bind 9.4 75 0.0055 21.5 2.2 19 172-190 70-89 (91)
9 d1zs4a1 a.35.1.9 (A:4-81) Regu 9.4 1.2E+02 0.0085 20.9 3.1 48 171-219 25-73 (78)
10 d1veja1 a.5.2.1 (A:8-68) 49314 9.0 1.1E+02 0.0077 20.2 2.7 13 85-97 27-39 (61)
No 1
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=38.24 E-value=11 Score=26.83 Aligned_cols=43 Identities=12% Similarity=0.162 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHH
Q 023622 154 GVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGN 196 (279)
Q Consensus 154 g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~~~fyG~ 196 (279)
+..+...-||.+-..+...|++.||+....+.+....+.+.+-
T Consensus 70 ~~~I~~~~fd~~~~~l~~al~e~~v~~~~~~e~~~~~~~lr~~ 112 (116)
T d1dlwa_ 70 NMGVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRGD 112 (116)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 3457788899999999999999999854444555555554443
No 2
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.10 E-value=1.5e+02 Score=21.78 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=43.0
Q ss_pred hhHHHHHHHHhhcccCCchhhhhHHHHHHHHHHhcCchhhHhhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHH
Q 023622 80 EGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQ 159 (279)
Q Consensus 80 ~g~~~~i~kl~gf~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q 159 (279)
.++..++..+|+ +++....+...|....+....| +
T Consensus 19 dPf~~LV~~ILs----qqT~~~~v~~v~~~L~~~~pt~-----------------------------------------e 53 (144)
T d1ngna_ 19 DPWKLLIATIFL----NRTSGKMAIPVLWEFLEKYPSA-----------------------------------------E 53 (144)
T ss_dssp SHHHHHHHHHHH----TTSCHHHHHHHHHHHHHHSCSH-----------------------------------------H
T ss_pred CHHHHHHHHHHH----ccCCHHHHHHHHHHHHHhCCch-----------------------------------------h
Confidence 457788888886 5555555667777665443222 2
Q ss_pred HHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHH
Q 023622 160 YLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIF 193 (279)
Q Consensus 160 ~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~~~f 193 (279)
.|-+.=.++++.-|+..|....-.|+++++.+.+
T Consensus 54 ~la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~~~ 87 (144)
T d1ngna_ 54 VARAADWRDVSELLKPLGLYDLRAKTIIKFSDEY 87 (144)
T ss_dssp HHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHhhhhHHHHHHHHHHHHhhH
Confidence 3333445667777777776555677888887765
No 3
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=20.02 E-value=33 Score=24.72 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccchh
Q 023622 156 ELGQYLYEIYNHDVEMRVSKAGVNLL 181 (279)
Q Consensus 156 ~l~Q~L~D~ff~DvE~rlRe~GV~~~ 181 (279)
.+...-||.+-..+...|++.||+..
T Consensus 84 ~I~~~~f~~~~~~l~~al~e~~v~~~ 109 (127)
T d1idra_ 84 GITMHHFSLVAGHLADALTAAGVPSE 109 (127)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CcCHHHHHHHHHHHHHHHHHcCCCHH
Confidence 46677899999999999999999743
No 4
>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.96 E-value=69 Score=24.25 Aligned_cols=31 Identities=3% Similarity=0.090 Sum_probs=24.3
Q ss_pred HhhcCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 023622 147 LKEEGKEGVELGQYLYEIYNHDVEMRVSKAG 177 (279)
Q Consensus 147 Lr~eg~~g~~l~Q~L~D~ff~DvE~rlRe~G 177 (279)
|+...++...+.+.|++.|+.+.+..+.++.
T Consensus 16 l~~m~~~d~~f~~~li~~F~~~~~~~~~~l~ 46 (166)
T d2r25a1 16 IISMDDDDSDFSKGLIIQFIDQAQTTFAQMQ 46 (166)
T ss_dssp HHHTTTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443444678999999999999999988764
No 5
>d1ux8a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Bacillus subtilis [TaxId: 1423]}
Probab=13.33 E-value=1.9e+02 Score=19.77 Aligned_cols=35 Identities=3% Similarity=0.032 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccchhhhHHHHH
Q 023622 154 GVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKE 188 (279)
Q Consensus 154 g~~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~ 188 (279)
+..+...-||.+-..+...|.++||+..+...+..
T Consensus 73 ~~~I~~~~fd~wl~~~~~al~~~~~~~~~~~~~~~ 107 (119)
T d1ux8a_ 73 PFPITNERADAWLSCMKDAMDHVGLEGEIREFLFG 107 (119)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34578889999999999999999997444444433
No 6
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=11.18 E-value=92 Score=21.40 Aligned_cols=40 Identities=8% Similarity=-0.047 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHH
Q 023622 156 ELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYG 195 (279)
Q Consensus 156 ~l~Q~L~D~ff~DvE~rlRe~GV~~~v~K~mK~L~~~fyG 195 (279)
.+...-||.+-..+...|+++||+......+-...+.+.+
T Consensus 74 ~i~~~~f~~~~~~l~~al~~~~v~~~~~~e~~~~~~~~r~ 113 (121)
T d1dlya_ 74 HLSDVHFQAVARHLSDTLTELGVPPEDITDAMAVVASTRT 113 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 4777889999999999999999974333333333333443
No 7
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]}
Probab=10.44 E-value=87 Score=24.10 Aligned_cols=66 Identities=8% Similarity=0.005 Sum_probs=43.9
Q ss_pred HHHhhcccCCchhhhhHHHH---HHHHHHhcCchhhHhhhCCCCchhhHHHHHHHHHHHHHHHHhhcCcchhhHHHHHHH
Q 023622 87 LKLMLFYSKQSKSIRGANVI---YKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYE 163 (279)
Q Consensus 87 ~kl~gf~sk~s~~~r~a~~L---Y~~iv~qar~p~fY~~~glpDTF~~wF~m~~LHvWLll~RLr~eg~~g~~l~Q~L~D 163 (279)
-.+-+|+.......++++.| ...||+++.+--|-+. |+. - .+.|....+.-.+
T Consensus 25 ~~l~~~~~~~~~Rl~aa~~L~~na~~IV~~A~~~l~~~~---P~l-------------------~--~~gg~~y~~~r~~ 80 (164)
T d1b8da_ 25 ESIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKY---SYL-------------------K--NAGEAGDSPEKIN 80 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---GGG-------------------G--STTSTTSSHHHHH
T ss_pred HHHHHHHHchHHhHHHHHHHHHhHHHHHHHHHHHHHHHC---cCC-------------------C--CCCCCcccHHHHH
Confidence 34445666666666767666 7788888776654321 221 1 2235667788889
Q ss_pred HHHHHHHHHHHHh
Q 023622 164 IYNHDVEMRVSKA 176 (279)
Q Consensus 164 ~ff~DvE~rlRe~ 176 (279)
..|.|++.-||-.
T Consensus 81 ~C~RD~~~~LR~i 93 (164)
T d1b8da_ 81 KCYRDIDHYMRLI 93 (164)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999973
No 8
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=9.40 E-value=75 Score=21.45 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHhccc-hhhhHHHHHHH
Q 023622 172 RVSKAGVN-LLLSKWMKELE 190 (279)
Q Consensus 172 rlRe~GV~-~~v~K~mK~L~ 190 (279)
.-+.+||+ .++.++||++.
T Consensus 70 AA~~LGI~R~TL~~Klk~~g 89 (91)
T d1ntca_ 70 AARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHC
Confidence 34568998 78999999874
No 9
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=9.39 E-value=1.2e+02 Score=20.88 Aligned_cols=48 Identities=13% Similarity=0.256 Sum_probs=33.6
Q ss_pred HHHHHhccc-hhhhHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHH
Q 023622 171 MRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWR 219 (279)
Q Consensus 171 ~rlRe~GV~-~~v~K~mK~L~~~fyG~~~AYDeaL~~~d~d~~LAaALWR 219 (279)
.--..+||+ +.|.+|-..+..++-=.+.-..-|+.++ +-+.||.-+.+
T Consensus 25 k~A~amGv~esqiSRwK~~f~~q~smlLAvLE~GV~D~-ema~Lak~vA~ 73 (78)
T d1zs4a1 25 KTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEWGVVDD-DMARLARQVAA 73 (78)
T ss_dssp HHHHHHTSCHHHHHHHHHHTHHHHHHHHHHHTTCCCHH-HHHHHHHHHHH
T ss_pred hHHHHhCCCHHHHHHHHHhhHHHHHHHHHHHHhccCcH-HHHHHHHHHHH
Confidence 334568998 8899988889998887777778888532 23556655444
No 10
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=9.01 E-value=1.1e+02 Score=20.17 Aligned_cols=13 Identities=23% Similarity=0.212 Sum_probs=8.0
Q ss_pred HHHHHhhcccCCc
Q 023622 85 FILKLMLFYSKQS 97 (279)
Q Consensus 85 ~i~kl~gf~sk~s 97 (279)
-.++-|||+....
T Consensus 27 ~qL~eMGF~d~~~ 39 (61)
T d1veja1 27 EELKALGFANRDA 39 (61)
T ss_dssp HHHHHHTCCCHHH
T ss_pred HHHHHcCCCCHHH
Confidence 3455689876543
Done!