Query 023623
Match_columns 279
No_of_seqs 155 out of 1318
Neff 8.3
Searched_HMMs 46136
Date Fri Mar 29 05:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023623.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023623hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 6.8E-57 1.5E-61 395.9 33.4 264 6-276 33-296 (297)
2 COG5074 t-SNARE complex subuni 100.0 3.7E-41 8.1E-46 277.9 29.0 250 10-273 22-274 (280)
3 KOG0809 SNARE protein TLG2/Syn 100.0 1.1E-35 2.4E-40 254.3 23.9 247 7-272 55-303 (305)
4 KOG0811 SNARE protein PEP12/VA 100.0 6.8E-32 1.5E-36 233.7 29.0 248 9-273 17-267 (269)
5 COG5325 t-SNARE complex subuni 99.9 6.5E-24 1.4E-28 180.7 27.9 248 4-273 29-281 (283)
6 cd00179 SynN Syntaxin N-termin 99.9 2.8E-22 6.1E-27 162.4 19.2 150 8-164 1-150 (151)
7 KOG0812 SNARE protein SED5/Syn 99.9 8.9E-19 1.9E-23 149.8 27.9 244 7-267 39-308 (311)
8 smart00503 SynN Syntaxin N-ter 99.7 5.3E-15 1.2E-19 114.5 15.6 116 7-129 2-117 (117)
9 PF05739 SNARE: SNARE domain; 99.6 1.6E-14 3.5E-19 99.5 10.5 63 183-245 1-63 (63)
10 PF00804 Syntaxin: Syntaxin; 99.5 2.2E-13 4.7E-18 102.7 13.4 103 7-114 1-103 (103)
11 cd00193 t_SNARE Soluble NSF (N 99.5 2.5E-13 5.4E-18 92.3 7.9 59 182-240 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.3 1.1E-11 2.3E-16 85.8 9.3 63 178-240 4-66 (66)
13 KOG3202 SNARE protein TLG1/Syn 99.0 2E-06 4.3E-11 73.8 27.4 225 9-267 6-232 (235)
14 PF14523 Syntaxin_2: Syntaxin- 98.6 1.6E-06 3.4E-11 65.3 13.6 98 18-128 1-98 (102)
15 KOG3894 SNARE protein Syntaxin 98.4 0.00012 2.7E-09 64.5 22.1 89 177-265 223-311 (316)
16 PF00957 Synaptobrevin: Synapt 97.9 0.00046 9.9E-09 50.6 12.5 58 187-247 4-61 (89)
17 KOG0810 SNARE protein Syntaxin 97.3 0.11 2.4E-06 46.5 26.9 65 176-240 203-267 (297)
18 KOG0860 Synaptobrevin/VAMP-lik 97.2 0.011 2.4E-07 44.9 11.7 81 186-269 29-113 (116)
19 COG5074 t-SNARE complex subuni 97.1 0.13 2.9E-06 43.8 22.3 51 193-243 185-235 (280)
20 KOG3385 V-SNARE [Intracellular 97.1 0.005 1.1E-07 46.6 8.4 79 185-265 35-113 (118)
21 PF09753 Use1: Membrane fusion 96.9 0.019 4.1E-07 50.3 12.1 79 186-270 170-248 (251)
22 KOG0811 SNARE protein PEP12/VA 94.6 3.1 6.7E-05 36.8 22.4 84 179-265 180-263 (269)
23 KOG1666 V-SNARE [Intracellular 92.6 5.8 0.00012 33.6 24.3 57 209-266 158-214 (220)
24 KOG3065 SNAP-25 (synaptosome-a 91.9 0.89 1.9E-05 40.2 8.0 56 184-239 216-271 (273)
25 PF00957 Synaptobrevin: Synapt 91.6 3.9 8.4E-05 29.5 12.6 69 175-270 20-88 (89)
26 PF03908 Sec20: Sec20; InterP 91.2 4.6 9.9E-05 29.5 12.3 55 209-263 31-85 (92)
27 KOG0809 SNARE protein TLG2/Syn 90.0 14 0.0003 33.0 21.3 233 12-268 63-303 (305)
28 PF10717 ODV-E18: Occlusion-de 89.5 0.49 1.1E-05 33.7 3.3 13 266-278 39-51 (85)
29 PF09753 Use1: Membrane fusion 86.6 16 0.00035 31.8 12.0 81 178-261 154-236 (251)
30 PF04505 Dispanin: Interferon- 85.3 0.56 1.2E-05 33.7 1.7 36 229-264 45-80 (82)
31 KOG0859 Synaptobrevin/VAMP-lik 85.1 3.3 7.1E-05 34.7 6.2 82 188-272 127-212 (217)
32 PF09889 DUF2116: Uncharacteri 84.5 2.3 5.1E-05 28.5 4.3 9 250-258 40-48 (59)
33 PF03904 DUF334: Domain of unk 83.7 27 0.00059 29.9 19.6 32 98-129 68-99 (230)
34 PF12911 OppC_N: N-terminal TM 83.7 3.7 7.9E-05 26.8 5.1 35 240-274 8-42 (56)
35 PF10717 ODV-E18: Occlusion-de 82.0 2.4 5.2E-05 30.2 3.7 29 250-278 26-54 (85)
36 PF05478 Prominin: Prominin; 81.0 72 0.0016 32.9 31.4 55 188-244 359-413 (806)
37 KOG2678 Predicted membrane pro 80.5 36 0.00078 29.1 11.1 72 187-264 159-231 (244)
38 PF02346 Vac_Fusion: Chordopox 76.1 20 0.00043 23.8 6.5 44 187-230 2-45 (57)
39 KOG0994 Extracellular matrix g 75.6 1.2E+02 0.0026 32.5 24.5 63 5-72 1421-1483(1758)
40 PRK04325 hypothetical protein; 74.7 26 0.00057 24.5 8.2 45 188-232 11-55 (74)
41 PRK08307 stage III sporulation 74.3 11 0.00024 30.9 6.2 32 234-265 138-170 (171)
42 KOG3850 Predicted membrane pro 73.2 80 0.0017 29.4 18.6 42 182-225 305-346 (455)
43 TIGR02833 spore_III_AB stage I 72.8 13 0.00028 30.5 6.2 32 234-265 137-169 (170)
44 PF04102 SlyX: SlyX; InterPro 71.6 30 0.00065 23.8 7.0 48 187-234 5-52 (69)
45 PF09889 DUF2116: Uncharacteri 71.6 13 0.00027 25.0 4.8 15 251-265 38-52 (59)
46 PRK00295 hypothetical protein; 71.1 31 0.00067 23.7 8.0 45 188-232 7-51 (68)
47 KOG0860 Synaptobrevin/VAMP-lik 70.4 42 0.00091 25.7 7.9 42 226-267 72-114 (116)
48 PRK10884 SH3 domain-containing 70.3 67 0.0014 27.3 14.1 41 199-239 117-157 (206)
49 PHA02844 putative transmembran 69.2 6.6 0.00014 27.4 3.1 9 248-256 46-54 (75)
50 PF09548 Spore_III_AB: Stage I 69.1 17 0.00038 29.7 6.2 31 235-265 138-169 (170)
51 PF14575 EphA2_TM: Ephrin type 69.0 8.3 0.00018 27.1 3.7 23 250-272 1-23 (75)
52 PHA02975 hypothetical protein; 68.6 6.4 0.00014 27.0 2.9 12 246-257 40-51 (69)
53 PF05478 Prominin: Prominin; 67.5 70 0.0015 33.0 11.5 44 193-236 357-401 (806)
54 PF05667 DUF812: Protein of un 66.4 1.4E+02 0.0031 29.6 19.4 42 179-221 541-582 (594)
55 PF09177 Syntaxin-6_N: Syntaxi 66.3 49 0.0011 24.2 11.9 62 11-82 3-64 (97)
56 PHA03054 IMV membrane protein; 66.0 9.4 0.0002 26.3 3.3 8 249-256 47-54 (72)
57 PHA02819 hypothetical protein; 65.6 9.6 0.00021 26.3 3.3 8 249-256 45-52 (71)
58 PF06789 UPF0258: Uncharacteri 65.2 1.5 3.4E-05 34.9 -0.7 18 233-250 115-132 (159)
59 PF00523 Fusion_gly: Fusion gl 64.9 11 0.00024 36.3 4.8 35 215-250 433-467 (490)
60 PF00435 Spectrin: Spectrin re 64.8 46 0.001 23.4 11.0 21 9-29 4-24 (105)
61 PHA02414 hypothetical protein 64.3 56 0.0012 24.1 9.6 44 187-230 30-73 (111)
62 COG4575 ElaB Uncharacterized c 63.7 60 0.0013 24.3 10.1 16 248-263 82-97 (104)
63 PRK14762 membrane protein; Pro 63.6 13 0.00028 20.2 2.8 11 260-270 13-23 (27)
64 PF01601 Corona_S2: Coronaviru 62.9 2 4.3E-05 41.8 -0.6 67 8-79 254-320 (610)
65 PF12911 OppC_N: N-terminal TM 62.6 7.7 0.00017 25.2 2.4 24 253-276 17-40 (56)
66 PF05399 EVI2A: Ectropic viral 61.6 9.2 0.0002 32.3 3.2 19 249-267 130-148 (227)
67 PF05957 DUF883: Bacterial pro 61.2 60 0.0013 23.5 11.9 72 193-265 9-89 (94)
68 COG3736 VirB8 Type IV secretor 60.3 30 0.00066 30.0 6.2 40 233-272 26-66 (239)
69 PF11239 DUF3040: Protein of u 59.5 16 0.00034 26.0 3.7 12 215-226 10-21 (82)
70 PF09164 VitD-bind_III: Vitami 59.3 18 0.0004 24.6 3.7 29 126-155 12-40 (68)
71 PF09125 COX2-transmemb: Cytoc 59.0 20 0.00043 21.4 3.3 18 248-265 14-31 (38)
72 PF06072 Herpes_US9: Alphaherp 58.8 31 0.00068 23.0 4.6 12 233-244 11-22 (60)
73 PRK10404 hypothetical protein; 58.3 75 0.0016 23.7 11.2 46 217-263 41-94 (101)
74 KOG3251 Golgi SNAP receptor co 58.2 1.2E+02 0.0026 25.9 23.1 56 209-265 152-207 (213)
75 PF14812 PBP1_TM: Transmembran 57.9 0.53 1.2E-05 33.6 -4.0 14 244-257 61-74 (81)
76 PTZ00478 Sec superfamily; Prov 57.9 36 0.00078 24.3 5.2 51 217-267 14-64 (81)
77 PF01102 Glycophorin_A: Glycop 57.5 14 0.00029 28.7 3.3 21 250-270 68-88 (122)
78 PHA02692 hypothetical protein; 57.0 17 0.00037 25.1 3.3 9 248-256 43-51 (70)
79 PRK13865 type IV secretion sys 56.7 44 0.00096 28.8 6.7 25 250-274 41-65 (229)
80 COG4068 Uncharacterized protei 56.2 18 0.00038 24.1 3.1 9 237-245 33-41 (64)
81 KOG0972 Huntingtin interacting 56.0 1.5E+02 0.0033 26.6 10.3 20 101-120 273-292 (384)
82 KOG1693 emp24/gp25L/p24 family 55.9 65 0.0014 27.1 7.2 18 182-199 127-144 (209)
83 PRK10132 hypothetical protein; 55.8 87 0.0019 23.7 11.4 19 247-265 84-102 (108)
84 PF11598 COMP: Cartilage oligo 54.8 32 0.00069 21.7 4.0 26 190-215 5-30 (45)
85 PF04272 Phospholamban: Phosph 54.5 15 0.00032 23.0 2.4 10 252-261 36-45 (52)
86 PF05568 ASFV_J13L: African sw 54.2 11 0.00024 29.9 2.3 22 251-272 32-53 (189)
87 PF10661 EssA: WXG100 protein 54.2 19 0.00041 28.8 3.7 26 245-270 114-139 (145)
88 PRK09400 secE preprotein trans 54.1 48 0.001 22.3 5.1 48 221-268 5-52 (61)
89 KOG3498 Preprotein translocase 53.6 44 0.00095 22.7 4.7 51 217-267 2-52 (67)
90 KOG3202 SNARE protein TLG1/Syn 53.4 1E+02 0.0022 26.8 8.3 20 208-227 146-165 (235)
91 PHA03240 envelope glycoprotein 53.3 13 0.00029 31.5 2.8 13 249-261 214-226 (258)
92 PF06143 Baculo_11_kDa: Baculo 53.2 35 0.00076 24.6 4.6 7 235-241 20-26 (84)
93 PRK02793 phi X174 lysis protei 52.9 75 0.0016 22.0 7.8 46 187-232 9-54 (72)
94 cd00193 t_SNARE Soluble NSF (N 52.8 58 0.0013 20.7 8.4 55 191-245 4-58 (60)
95 PRK00736 hypothetical protein; 52.7 73 0.0016 21.8 7.8 45 188-232 7-51 (68)
96 TIGR01294 P_lamban phospholamb 52.6 33 0.0007 21.5 3.7 10 252-261 36-45 (52)
97 PF00523 Fusion_gly: Fusion gl 52.4 12 0.00026 36.0 2.8 24 216-239 440-463 (490)
98 PF10027 DUF2269: Predicted in 52.1 20 0.00043 28.5 3.6 33 240-272 118-150 (150)
99 PF05531 NPV_P10: Nucleopolyhe 52.0 82 0.0018 22.2 7.4 52 16-69 7-58 (75)
100 COG4640 Predicted membrane pro 51.4 25 0.00054 32.7 4.4 26 250-275 52-77 (465)
101 PHA02673 ORF109 EEV glycoprote 51.2 19 0.0004 29.1 3.2 19 236-254 17-35 (161)
102 PRK10573 type IV pilin biogene 50.9 2.1E+02 0.0045 26.6 10.8 54 190-243 110-166 (399)
103 KOG1666 V-SNARE [Intracellular 50.9 59 0.0013 27.7 6.2 32 221-252 163-194 (220)
104 PF06789 UPF0258: Uncharacteri 50.5 10 0.00023 30.3 1.7 33 238-270 123-155 (159)
105 PF14992 TMCO5: TMCO5 family 50.0 1.9E+02 0.0041 25.8 13.0 55 177-231 121-175 (280)
106 PF10779 XhlA: Haemolysin XhlA 49.5 83 0.0018 21.6 10.4 39 214-256 20-58 (71)
107 PRK02119 hypothetical protein; 47.9 93 0.002 21.7 8.0 47 186-232 9-55 (73)
108 PF10267 Tmemb_cc2: Predicted 47.2 2.5E+02 0.0054 26.4 13.3 30 211-240 295-325 (395)
109 PRK04406 hypothetical protein; 47.2 98 0.0021 21.7 7.8 46 187-232 12-57 (75)
110 PRK01844 hypothetical protein; 47.1 30 0.00066 24.1 3.3 14 250-263 4-17 (72)
111 PHA03164 hypothetical protein; 46.9 23 0.00049 24.9 2.7 6 269-274 77-82 (88)
112 PF07957 DUF3294: Protein of u 46.3 1.9E+02 0.0041 24.7 11.9 43 109-156 126-168 (216)
113 TIGR01149 mtrG N5-methyltetrah 46.2 97 0.0021 21.4 6.5 38 216-262 21-60 (70)
114 PF10267 Tmemb_cc2: Predicted 46.2 2.6E+02 0.0056 26.3 13.3 34 4-37 210-243 (395)
115 COG2443 Sss1 Preprotein transl 46.1 94 0.002 21.2 5.6 29 218-246 3-31 (65)
116 PF07438 DUF1514: Protein of u 45.9 20 0.00043 24.3 2.2 14 254-267 4-17 (66)
117 TIGR00327 secE_euk_arch protei 45.4 55 0.0012 22.0 4.3 44 224-267 4-47 (61)
118 PF07106 TBPIP: Tat binding pr 45.4 1.6E+02 0.0035 23.7 9.5 67 5-78 71-137 (169)
119 COG2966 Uncharacterized conser 44.7 36 0.00077 29.8 4.3 50 216-265 92-141 (250)
120 COG5325 t-SNARE complex subuni 44.6 2.3E+02 0.0049 25.2 26.4 87 178-268 194-280 (283)
121 KOG3065 SNAP-25 (synaptosome-a 44.4 73 0.0016 28.3 6.2 36 203-238 96-131 (273)
122 PF12575 DUF3753: Protein of u 43.7 26 0.00056 24.4 2.6 22 245-266 40-61 (72)
123 PF06783 UPF0239: Uncharacteri 43.5 39 0.00084 24.3 3.5 24 250-273 21-44 (85)
124 PF03310 Cauli_DNA-bind: Cauli 43.1 1.5E+02 0.0033 22.8 9.1 64 9-78 2-69 (121)
125 PRK11020 hypothetical protein; 42.7 1.5E+02 0.0033 22.6 6.8 44 18-61 3-46 (118)
126 PF13314 DUF4083: Domain of un 42.6 43 0.00093 22.2 3.3 17 250-266 6-22 (58)
127 PHA02819 hypothetical protein; 42.0 29 0.00062 24.0 2.5 27 241-267 34-60 (71)
128 PF10749 DUF2534: Protein of u 41.9 34 0.00074 24.4 3.0 18 247-264 11-28 (85)
129 PHA02675 ORF104 fusion protein 41.7 1.3E+02 0.0028 21.6 6.7 40 191-230 35-74 (90)
130 PRK00523 hypothetical protein; 41.6 41 0.00089 23.4 3.3 19 252-270 3-21 (72)
131 COG4942 Membrane-bound metallo 41.6 3.1E+02 0.0068 26.0 10.4 62 180-241 39-100 (420)
132 PF12669 P12: Virus attachment 41.4 24 0.00051 23.5 2.1 11 266-276 17-27 (58)
133 PHA02642 C-type lectin-like pr 39.7 15 0.00033 31.4 1.2 24 251-274 52-75 (216)
134 PF03653 UPF0093: Uncharacteri 39.2 28 0.00061 27.8 2.6 25 249-273 123-147 (147)
135 PHA02844 putative transmembran 37.9 36 0.00079 23.8 2.6 24 243-266 38-61 (75)
136 PF08412 Ion_trans_N: Ion tran 37.7 55 0.0012 23.1 3.6 28 249-276 46-73 (77)
137 TIGR01834 PHA_synth_III_E poly 37.4 3.2E+02 0.007 24.9 9.4 37 20-56 263-299 (320)
138 PF13198 DUF4014: Protein of u 37.4 38 0.00082 23.4 2.6 9 241-249 7-15 (72)
139 PF00482 T2SF: Type II secreti 37.2 1.4E+02 0.0031 21.5 6.3 21 198-218 59-79 (124)
140 PRK13872 conjugal transfer pro 37.2 1E+02 0.0022 26.4 5.9 7 267-273 59-65 (228)
141 PRK00846 hypothetical protein; 37.1 1.5E+02 0.0033 21.0 7.9 48 187-234 14-61 (77)
142 PF15183 MRAP: Melanocortin-2 36.4 39 0.00085 24.2 2.6 14 250-263 37-50 (90)
143 PF10814 DUF2562: Protein of u 36.2 1.8E+02 0.004 22.5 6.4 40 219-258 60-100 (133)
144 PF00517 GP41: Retroviral enve 35.9 94 0.002 26.3 5.4 14 184-197 106-119 (204)
145 smart00806 AIP3 Actin interact 35.7 3.9E+02 0.0085 25.4 18.5 32 180-211 374-405 (426)
146 smart00502 BBC B-Box C-termina 35.6 1.8E+02 0.0039 21.4 8.7 67 175-241 20-88 (127)
147 PF04210 MtrG: Tetrahydrometha 35.6 1.5E+02 0.0032 20.5 7.5 15 250-264 48-62 (70)
148 TIGR00701 conserved hypothetic 35.6 31 0.00067 27.4 2.3 26 249-274 117-142 (142)
149 PF10498 IFT57: Intra-flagella 35.4 3.7E+02 0.0079 24.9 13.3 16 7-22 192-207 (359)
150 PF05739 SNARE: SNARE domain; 35.1 1.3E+02 0.0028 19.6 8.7 54 193-246 4-57 (63)
151 PF00429 TLV_coat: ENV polypro 34.5 1.1E+02 0.0023 30.2 6.3 25 186-210 435-459 (561)
152 PF10864 DUF2663: Protein of u 34.3 79 0.0017 24.8 4.3 33 238-270 11-43 (130)
153 TIGR01478 STEVOR variant surfa 34.0 30 0.00064 30.8 2.1 33 47-79 56-88 (295)
154 PF06388 DUF1075: Protein of u 33.7 69 0.0015 25.6 3.9 24 246-269 90-113 (146)
155 PHA03395 p10 fibrous body prot 33.6 1.9E+02 0.004 21.0 6.9 49 17-67 8-56 (87)
156 PF15106 TMEM156: TMEM156 prot 33.5 37 0.00081 28.8 2.5 20 253-272 178-197 (226)
157 PRK15365 type III secretion sy 33.5 2E+02 0.0043 21.3 8.3 27 13-39 9-35 (107)
158 PF09788 Tmemb_55A: Transmembr 33.3 40 0.00087 29.4 2.8 26 248-273 195-220 (256)
159 PTZ00370 STEVOR; Provisional 33.2 31 0.00068 30.7 2.1 34 46-79 54-87 (296)
160 PF05597 Phasin: Poly(hydroxya 33.1 2.2E+02 0.0048 22.3 6.7 26 40-65 103-128 (132)
161 PRK13673 hypothetical protein; 32.8 1.1E+02 0.0023 23.7 4.7 17 233-249 75-91 (118)
162 PF01601 Corona_S2: Coronaviru 32.5 2.6E+02 0.0056 27.7 8.3 61 15-80 254-314 (610)
163 PF08372 PRT_C: Plant phosphor 32.2 2.7E+02 0.0059 22.5 7.5 17 180-196 56-72 (156)
164 PF14147 Spore_YhaL: Sporulati 31.6 59 0.0013 21.1 2.6 18 249-266 2-19 (52)
165 PF05399 EVI2A: Ectropic viral 30.5 51 0.0011 28.0 2.8 19 252-270 129-147 (227)
166 PRK11901 hypothetical protein; 30.5 48 0.001 30.1 2.9 19 248-266 35-53 (327)
167 PRK10884 SH3 domain-containing 30.4 3.4E+02 0.0073 23.0 13.8 51 220-272 145-196 (206)
168 PF04906 Tweety: Tweety; Inte 30.4 1.8E+02 0.0038 27.4 6.8 12 191-202 123-134 (406)
169 PF10496 Syntaxin-18_N: SNARE- 30.1 1.1E+02 0.0025 21.7 4.4 33 6-38 36-68 (87)
170 PF12352 V-SNARE_C: Snare regi 29.9 1.7E+02 0.0037 19.4 10.2 49 193-241 15-63 (66)
171 KOG2927 Membrane component of 29.8 39 0.00084 31.0 2.2 20 249-268 189-208 (372)
172 PRK13887 conjugal transfer pro 29.8 1.5E+02 0.0033 25.8 5.9 25 249-273 54-79 (250)
173 PF09371 Tex_N: Tex-like prote 29.5 3.4E+02 0.0073 22.7 8.8 71 151-228 17-87 (193)
174 PF04888 SseC: Secretion syste 29.5 4.1E+02 0.0088 23.6 9.2 23 224-246 33-55 (306)
175 PF05546 She9_MDM33: She9 / Md 29.2 3.6E+02 0.0078 22.9 20.3 26 249-274 152-177 (207)
176 PF03915 AIP3: Actin interacti 28.5 5.2E+02 0.011 24.6 16.0 155 16-213 172-326 (424)
177 PRK10381 LPS O-antigen length 28.0 60 0.0013 30.2 3.2 22 251-272 41-62 (377)
178 PF06657 Cep57_MT_bd: Centroso 27.9 2.2E+02 0.0048 20.1 9.8 65 6-70 10-74 (79)
179 KOG0859 Synaptobrevin/VAMP-lik 27.7 2E+02 0.0044 24.3 5.8 82 185-276 121-212 (217)
180 PF11087 DUF2881: Protein of u 27.4 81 0.0018 20.0 2.7 22 256-277 10-31 (54)
181 PHA03164 hypothetical protein; 27.0 1.5E+02 0.0032 20.9 4.1 22 253-274 64-85 (88)
182 PF07544 Med9: RNA polymerase 26.7 1.4E+02 0.0029 21.3 4.2 29 181-209 54-82 (83)
183 PF12022 DUF3510: Domain of un 26.6 2.8E+02 0.0061 21.3 6.3 49 7-55 71-121 (125)
184 PF06738 DUF1212: Protein of u 26.5 1E+02 0.0022 25.3 4.1 42 217-258 71-112 (193)
185 TIGR02302 aProt_lowcomp conser 26.1 7.3E+02 0.016 26.0 10.7 21 198-218 621-641 (851)
186 PTZ00464 SNF-7-like protein; P 26.0 2.8E+02 0.0061 23.6 6.7 16 11-26 83-98 (211)
187 PF03383 Serpentine_r_xa: Caen 25.9 73 0.0016 25.7 2.9 26 247-272 85-110 (153)
188 TIGR00847 ccoS cytochrome oxid 25.9 1E+02 0.0022 19.9 3.1 22 253-274 6-27 (51)
189 PF11337 DUF3139: Protein of u 25.6 75 0.0016 22.6 2.7 18 250-267 8-25 (85)
190 PF11293 DUF3094: Protein of u 25.6 1.2E+02 0.0025 19.9 3.2 20 246-265 27-46 (55)
191 PF03597 CcoS: Cytochrome oxid 25.5 1E+02 0.0022 19.4 2.9 14 254-267 6-19 (45)
192 smart00150 SPEC Spectrin repea 25.3 2.3E+02 0.0051 19.5 9.8 31 8-38 33-63 (101)
193 smart00397 t_SNARE Helical reg 25.0 1.9E+02 0.0042 18.5 9.7 56 188-243 7-62 (66)
194 PF07850 Renin_r: Renin recept 24.9 26 0.00056 26.1 0.1 26 253-278 57-82 (98)
195 PRK04778 septation ring format 24.8 6.8E+02 0.015 24.6 21.6 73 3-79 61-134 (569)
196 COG1459 PulF Type II secretory 24.8 5.9E+02 0.013 23.9 10.6 43 190-232 109-151 (397)
197 PF10805 DUF2730: Protein of u 24.5 3E+02 0.0066 20.5 8.2 40 16-58 38-77 (106)
198 PF03935 SKN1: Beta-glucan syn 24.1 71 0.0015 30.9 2.9 24 250-273 45-68 (504)
199 PF01299 Lamp: Lysosome-associ 24.1 74 0.0016 28.6 3.0 16 263-278 287-302 (306)
200 KOG4559 Uncharacterized conser 24.1 3.1E+02 0.0067 20.4 6.6 39 182-224 64-106 (120)
201 PF06694 Plant_NMP1: Plant nuc 23.9 4.4E+02 0.0095 23.9 7.5 35 3-37 165-199 (325)
202 PF15205 PLAC9: Placenta-speci 23.9 2.3E+02 0.0049 19.5 4.5 27 215-241 26-52 (74)
203 PF07457 DUF1516: Protein of u 23.8 1.4E+02 0.0031 22.6 4.0 28 233-260 77-104 (110)
204 PF15145 DUF4577: Domain of un 23.3 98 0.0021 23.5 2.9 24 247-270 59-82 (128)
205 PF09712 PHA_synth_III_E: Poly 23.2 4.3E+02 0.0092 23.7 7.6 9 10-18 219-227 (293)
206 PF08764 Coagulase: Staphyloco 22.6 5.6E+02 0.012 22.9 8.3 61 7-68 112-172 (282)
207 COG5278 Predicted periplasmic 22.6 4.8E+02 0.01 22.1 10.6 11 183-193 105-115 (207)
208 PF14015 DUF4231: Protein of u 22.5 1.6E+02 0.0034 21.7 4.1 14 238-251 9-22 (112)
209 COG4550 Predicted membrane pro 22.1 3.7E+02 0.0079 20.6 6.3 30 10-39 25-54 (120)
210 PF07889 DUF1664: Protein of u 22.0 3.9E+02 0.0084 20.8 8.9 28 11-38 41-68 (126)
211 PF12108 SF3a60_bindingd: Spli 21.9 1.2E+02 0.0026 17.0 2.4 17 4-20 5-21 (28)
212 PRK06654 fliL flagellar basal 21.8 1E+02 0.0022 25.7 3.0 11 268-278 53-63 (181)
213 PF04995 CcmD: Heme exporter p 21.7 1.5E+02 0.0033 18.4 3.3 16 250-265 8-23 (46)
214 PRK10573 type IV pilin biogene 21.6 4.9E+02 0.011 24.1 8.1 41 189-230 313-353 (399)
215 COG3352 FlaC Putative archaeal 21.6 4.4E+02 0.0095 21.3 8.9 63 177-239 77-140 (157)
216 PF07412 Geminin: Geminin; In 21.6 4.3E+02 0.0094 22.3 6.8 64 158-222 105-168 (200)
217 KOG2678 Predicted membrane pro 21.4 5.4E+02 0.012 22.2 10.6 75 190-267 155-230 (244)
218 TIGR02120 GspF general secreti 21.2 6.6E+02 0.014 23.2 10.8 120 147-272 271-391 (399)
219 PF10999 DUF2839: Protein of u 21.0 1.1E+02 0.0024 21.1 2.6 20 249-268 44-63 (68)
220 PF05008 V-SNARE: Vesicle tran 21.0 2.9E+02 0.0062 18.9 8.4 29 182-210 21-49 (79)
221 COG4499 Predicted membrane pro 21.0 1.6E+02 0.0034 27.6 4.4 19 248-266 220-238 (434)
222 PF13038 DUF3899: Domain of un 20.9 1.9E+02 0.0042 20.6 4.2 19 212-230 23-41 (92)
223 COG3162 Predicted membrane pro 20.9 2E+02 0.0043 21.4 4.1 35 243-277 20-54 (102)
224 PF01519 DUF16: Protein of unk 20.8 3.7E+02 0.008 20.1 7.9 42 187-228 54-95 (102)
225 PF04100 Vps53_N: Vps53-like, 20.8 6.9E+02 0.015 23.3 20.1 75 5-80 17-94 (383)
226 KOG4684 Uncharacterized conser 20.4 1.2E+02 0.0025 26.0 3.2 22 248-269 208-229 (275)
227 PF04415 DUF515: Protein of un 20.4 76 0.0016 29.9 2.3 24 247-270 28-51 (416)
228 PF06013 WXG100: Proteins of 1 20.3 2.8E+02 0.0061 18.5 12.3 33 44-76 5-37 (86)
229 PF07010 Endomucin: Endomucin; 20.2 1.3E+02 0.0027 26.0 3.3 6 273-278 215-220 (259)
230 COG5613 Uncharacterized conser 20.2 7E+02 0.015 23.1 9.1 31 216-246 135-165 (400)
231 PF14715 FixP_N: N-terminal do 20.2 2.2E+02 0.0049 18.3 3.8 16 249-264 22-37 (51)
232 PF07432 Hc1: Histone H1-like 20.2 4.1E+02 0.0089 20.4 6.6 45 198-242 2-46 (123)
233 PF13260 DUF4051: Protein of u 20.1 1.4E+02 0.003 19.1 2.6 9 250-258 5-13 (54)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-57 Score=395.87 Aligned_cols=264 Identities=43% Similarity=0.673 Sum_probs=244.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 023623 6 LGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQ 85 (279)
Q Consensus 6 ~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~ 85 (279)
.+|+.||..|++|+..|..+...+.+|.++|...+. .|...++++++|+.+..++.+.++.|+.+|+.+++.+...+.
T Consensus 33 ~~l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~--~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~ 110 (297)
T KOG0810|consen 33 SNLEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLH--SPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADET 110 (297)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 679999999999999999999999999999976554 566778999999999999999999999999999999876544
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHH
Q 023623 86 KPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA 165 (279)
Q Consensus 86 ~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~ 165 (279)
.+ +.++..|+|++++..++++|.++|.+|+.+|.+|+.+|+.++.|+|.++.+..++|++++.++++|+++.|++.+
T Consensus 111 ~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~~~~de~ie~~ie~g~~~~f~~~~ 187 (297)
T KOG0810|consen 111 QN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGEETTDEEIEEMIESGGSEVFTQKA 187 (297)
T ss_pred cC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcCChHHHHHHHHCCChHHHHHHH
Confidence 33 334568999999999999999999999999999999999999998877765599999999999999999999988
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 166 IQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 245 (279)
Q Consensus 166 l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~ 245 (279)
+. ++++++.+|.++++||.+|++||++|.|||+||.|||+||+.||+|||+||+||++|.+||++|..++++|++||+
T Consensus 188 i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qk 265 (297)
T KOG0810|consen 188 IQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQK 265 (297)
T ss_pred HH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87 5667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhccccCC
Q 023623 246 NSRKWMCIAIIILLIIVAIIVVAVIKPWSSN 276 (279)
Q Consensus 246 ~~rk~~~~~i~i~~ii~~~i~~~i~~~~~~~ 276 (279)
++|||+||||++++|+++++++++++||...
T Consensus 266 kaRK~k~i~ii~~iii~~v~v~~i~~~~~~~ 296 (297)
T KOG0810|consen 266 KARKWKIIIIIILIIIIVVLVVVIVVPLVLF 296 (297)
T ss_pred HhhhceeeeehHHHHHHHHHhhhhccccccC
Confidence 9999999999999999999999999999764
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.7e-41 Score=277.89 Aligned_cols=250 Identities=24% Similarity=0.454 Sum_probs=221.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC
Q 023623 10 NFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGC 89 (279)
Q Consensus 10 ~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~ 89 (279)
.|......|+.+++.++..+.++..+|++.+.-.+......+++.|+..+.++..+-+.++..++..+....
T Consensus 22 ~f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~~i-------- 93 (280)
T COG5074 22 TFMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERDGI-------- 93 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhccc--------
Confidence 466699999999999999999999999999887777778899999999999999999999999998876521
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHHHHH-
Q 023623 90 GKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQE- 168 (279)
Q Consensus 90 ~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~l~~- 168 (279)
-+.-++.|-.....+|.+++++|+.++..|+..|+++.+||| .|..|++|+++++..+.+.+..++|+++++.
T Consensus 94 -----hl~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy-~Ia~P~ATEdeve~aInd~nG~qvfsqalL~a 167 (280)
T COG5074 94 -----HLANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQY-IIAQPEATEDEVEAAINDVNGQQVFSQALLNA 167 (280)
T ss_pred -----chhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-hhcCCccchHHHHHHhcccchHHHHHHHHHhc
Confidence 124567888899999999999999999999999999998876 6677999999999999998888999998775
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023623 169 QGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR 248 (279)
Q Consensus 169 ~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~r 248 (279)
..+++++.+|.++++||.+|++||++|.||.+||+||+.||.+|.+++|-|+.|++.+..+|+.|+.++.+|.+|.|++|
T Consensus 168 nr~geAktaL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaR 247 (280)
T COG5074 168 NRRGEAKTALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAAR 247 (280)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHH
Confidence 55688999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred --hhHHHHHHHHHHHHHHHHHHHhccc
Q 023623 249 --KWMCIAIIILLIIVAIIVVAVIKPW 273 (279)
Q Consensus 249 --k~~~~~i~i~~ii~~~i~~~i~~~~ 273 (279)
||.||+||+++|++++++++=+.||
T Consensus 248 kkki~c~gI~~iii~viv~vv~~v~~~ 274 (280)
T COG5074 248 KKKIRCYGICFIIIIVIVVVVFKVVPF 274 (280)
T ss_pred hcceehhhhHHHHHHHHHHHHhcccch
Confidence 5788888777666655444323343
No 3
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-35 Score=254.29 Aligned_cols=247 Identities=20% Similarity=0.265 Sum_probs=190.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQK 86 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 86 (279)
..|.|.+.+++|+..+..++.++++|.+.|.+++ .++..+...-..+|+.++..|+.+++.|.+.|+.+.....
T Consensus 55 lpP~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n----- 128 (305)
T KOG0809|consen 55 LPPAWVDVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLN----- 128 (305)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----
Confidence 4678999999999999999999999999999886 4555554455789999999999999999999999876521
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hHhhcCCCCCHHHHHHHhhcCChhHHHHH
Q 023623 87 PGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERR--VYTVTGKRADEETIDQLIETGDSEQIFQK 164 (279)
Q Consensus 87 ~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~--~~~i~~~~~t~eei~~~ie~~~~~~~~q~ 164 (279)
.+.+.+..+++|.+..++.+++.++.+|+..|.+|-+..+.+-++- |..-..| .+..++...+...
T Consensus 129 ---~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~---------~~~~~dd~d~~~~ 196 (305)
T KOG0809|consen 129 ---QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDN---------TVDLPDDEDFSDR 196 (305)
T ss_pred ---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccc---------cccCcchhhhhhh
Confidence 1223455689999999999999999999998777665554443321 2111111 1222221111111
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 165 AIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQ 244 (279)
Q Consensus 165 ~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~ 244 (279)
.+++++..........+.+|++||.+|.+||.||++||.||+.||.+||.+||||||||+++..+|+.|.++|.||..||
T Consensus 197 ~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQ 276 (305)
T KOG0809|consen 197 TFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQ 276 (305)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHH
Confidence 11111111122345679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHhcc
Q 023623 245 KNSRKWMCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 245 ~~~rk~~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
|+++|++||++++++||++++++ |+++
T Consensus 277 k~~~k~~~i~~L~l~ii~llvll-ilk~ 303 (305)
T KOG0809|consen 277 KRNKKMKVILMLTLLIIALLVLL-ILKK 303 (305)
T ss_pred hcCCceEehHHHHHHHHHHHHHH-Hhhc
Confidence 99999999999999998887655 4444
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.8e-32 Score=233.72 Aligned_cols=248 Identities=20% Similarity=0.277 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 023623 9 ENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPG 88 (279)
Q Consensus 9 ~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~ 88 (279)
..|-..+.+|...|..+...+..|.+.+... .++.+...++.+++.....+.++++.+...|+.+....
T Consensus 17 ~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~l---gt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~-------- 85 (269)
T KOG0811|consen 17 FDFQQLAQEIAANIQRINQQVLSLLRFLNSL---GTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLR-------- 85 (269)
T ss_pred CcHhHHHHHHHHHHHHHhHHHHHHHHHHHHc---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------
Confidence 3688899999999999999999999999753 45667778999999999999999999999999987652
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHH--
Q 023623 89 CGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVV-ERRVYTVTGKRADEETIDQLIETGDSEQIFQKA-- 165 (279)
Q Consensus 89 ~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~-~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~-- 165 (279)
.....+..+.+...|.+.|..++++|+.+|.+.-...+.-. .|.. -.++.+ +++-...-+.+.+....+..
T Consensus 86 ---~~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~s--~~s~~~-~~~~~~~~~~~~~~~~~~~q~e 159 (269)
T KOG0811|consen 86 ---LESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARGS--QNSQQL-DEESPRVDELSNNGSQSQQQLE 159 (269)
T ss_pred ---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccccccccc--ccchhh-hhhhhhhhhhhccchhhhhHHH
Confidence 13456888999999999999999999999987765554100 1100 001111 11111111111111111111
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 166 IQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 245 (279)
Q Consensus 166 l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~ 245 (279)
+..+..+.+...+..+++|...|.+||..|.|||+||+||+.||++||++||+||+||++|.+||+.|..+|.+|.+|++
T Consensus 160 ~~~q~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~ 239 (269)
T KOG0811|consen 160 EQAQDNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQR 239 (269)
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111223567799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhccc
Q 023623 246 NSRKWMCIAIIILLIIVAIIVVAVIKPW 273 (279)
Q Consensus 246 ~~rk~~~~~i~i~~ii~~~i~~~i~~~~ 273 (279)
++|||.||++++++++++++++.|++..
T Consensus 240 ~~~k~~~~ll~v~~~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 240 KARKKKCILLLVGGPVGLIIGLIIAGIA 267 (269)
T ss_pred HhcCchhhhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999998888776644
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.94 E-value=6.5e-24 Score=180.73 Aligned_cols=248 Identities=17% Similarity=0.259 Sum_probs=159.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023623 4 GELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTS 83 (279)
Q Consensus 4 ~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~ 83 (279)
.+...|.|......+...+..+..++..+..-+.+.. .+.+.....=.+.|+.+...++..+..+.+.++........
T Consensus 29 ~~~l~p~~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~-~p~f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~~~~~~~~s- 106 (283)
T COG5325 29 DDALTPTFILSAASVDQELTAVRRSISRLGKVYAKHT-EPSFSDKSEKEDEIDELSKKVNQDLQRCEKILKTKYKNLQS- 106 (283)
T ss_pred hhccchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh-cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4557789999999999999999999999988887642 23333333333455666666666666665555543332110
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hH--hhcCCC-CCHHHHHHHhhcCChh
Q 023623 84 RQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERR-VY--TVTGKR-ADEETIDQLIETGDSE 159 (279)
Q Consensus 84 ~~~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~-~~--~i~~~~-~t~eei~~~ie~~~~~ 159 (279)
. .....|...|.-....++.+|.+.-.-.+.+..+. .+ ...+.. ..+++-+.........
T Consensus 107 -----------~-----~~~~kll~~~nt~~~~~~~iq~~~aq~r~~~~~~~k~l~~~~~~~~~l~eee~e~~~~~~~sq 170 (283)
T COG5325 107 -----------S-----FLQSKLLRDLNTECMEGQRIQQKSAQFRKYQVLQAKFLRNKNNDQHPLEEEEDEESLSSLGSQ 170 (283)
T ss_pred -----------H-----HHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhHHHHhcccccCchhhhhhhhhhhccchh
Confidence 0 01234455555555556655554322222222111 11 111111 1222222222211111
Q ss_pred H-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 160 Q-IFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 238 (279)
Q Consensus 160 ~-~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~ 238 (279)
+ ..++.+... +.-..-.-+.+|.++|.+|.++|.||++||.||+++|.+||+.||+||+|++++.+|++.|.++|.
T Consensus 171 ~~lqq~~l~~e---e~~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~ 247 (283)
T COG5325 171 QTLQQQGLSNE---ELEYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELE 247 (283)
T ss_pred hHHHHhhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHH
Confidence 2 222222211 111122338899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHHHhccc
Q 023623 239 KAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPW 273 (279)
Q Consensus 239 kA~~~~~~~rk~~~~~i~i~~ii~~~i~~~i~~~~ 273 (279)
+|..|+|+.+||.+|++++++||++++.+ +.+|.
T Consensus 248 kA~~hqrrt~k~~~~~Llil~vv~lfv~l-~~kl~ 281 (283)
T COG5325 248 KAPAHQRRTKKCRFYLLLILLVVLLFVSL-IKKLR 281 (283)
T ss_pred HhHHHHhhhccchhhHHHHHHHHHHHHHH-HHHhc
Confidence 99999999999999988888888877655 44443
No 6
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.90 E-value=2.8e-22 Score=162.42 Aligned_cols=150 Identities=31% Similarity=0.526 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Q 023623 8 LENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKP 87 (279)
Q Consensus 8 ~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~ 87 (279)
|++||..|+.|+..|..|+.++..|+.+|...++..+ ..+.++.+++.+..+++.+++.++..|+.|+..+.....
T Consensus 1 ~~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~--~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~-- 76 (151)
T cd00179 1 LEEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPD--ADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEA-- 76 (151)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 6899999999999999999999999999998876654 356899999999999999999999999999987543211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHH
Q 023623 88 GCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQK 164 (279)
Q Consensus 88 ~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~ 164 (279)
.+++++.|++++++.+|+++|+++|.+|+.+|..|+..|+++++|+|.+ .+|++||+|+++++++|++..|+++
T Consensus 77 --~~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~Rq~~i-~~~~~tdeei~~~~~~~~~~~~~~~ 150 (151)
T cd00179 77 --LNGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQRQLEI-TGGEATDEELEDMLESGNSEIFTSQ 150 (151)
T ss_pred --cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCChHHHHHHHHcCChhhhcCc
Confidence 1256889999999999999999999999999999999999999998755 5799999999999999988777653
No 7
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=8.9e-19 Score=149.77 Aligned_cols=244 Identities=19% Similarity=0.238 Sum_probs=171.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQK 86 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 86 (279)
.-.+|...+..|..+|.....++.+|..|.++... .+... -+|.+++--|+.....+...|-+|..-...
T Consensus 39 ~~seF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~-f~Dr~-----VeI~eLT~iikqdi~sln~~i~~Lqei~~~---- 108 (311)
T KOG0812|consen 39 QGSEFNKKASRIGKEISQTGAKLEKLAQLAKRKSL-FDDRP-----VEIQELTFIIKQDITSLNSQIAQLQEIVKA---- 108 (311)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccCcc-----hhhHHHHHHHhcchHHHHHHHHHHHHHHHH----
Confidence 44599999999999999999999999999987533 23221 378888888888888888888777664311
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-H-----hhcC-CC----CCHHHHHH----
Q 023623 87 PGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRV-Y-----TVTG-KR----ADEETIDQ---- 151 (279)
Q Consensus 87 ~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~-~-----~i~~-~~----~t~eei~~---- 151 (279)
.+..++..-....++.+..|-.++..+...|+.+.+--....++.--|+. + .+.+ |. +.......
T Consensus 109 ~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~ 188 (311)
T KOG0812|consen 109 NGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDP 188 (311)
T ss_pred hccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCc
Confidence 11111111245678899999999999999999987654444433322332 1 1111 10 00000001
Q ss_pred ---------HhhcCCh--hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023623 152 ---------LIETGDS--EQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIE 220 (279)
Q Consensus 152 ---------~ie~~~~--~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie 220 (279)
-++.|+. .+..+.++.+ ....++++|.+++.+||.+|.||.+||.+||.||.+|||++.|||
T Consensus 189 ~~~~sq~~~~ln~gd~~~~qqqQm~ll~-------es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID 261 (311)
T KOG0812|consen 189 KDEASQDVESLNMGDSSNPQQQQMALLD-------ESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRID 261 (311)
T ss_pred hhhcccccccccccCCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122221 1212222222 236789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 023623 221 SQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 221 ~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~ 267 (279)
.||+.+.-+++.|..+|.|.-..-+++|+.++=++.+++|++++.++
T Consensus 262 ~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl 308 (311)
T KOG0812|consen 262 DNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL 308 (311)
T ss_pred hcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988887776666555555554444
No 8
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=99.66 E-value=5.3e-15 Score=114.47 Aligned_cols=116 Identities=34% Similarity=0.614 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQK 86 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 86 (279)
+|++|+..|++|+..|..|+.++..|+.+|..++..++ ..+.++.+++.+..+++.+++.|+..|+.|+..+.....
T Consensus 2 ~~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~- 78 (117)
T smart00503 2 NLDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRA- 78 (117)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc-
Confidence 68999999999999999999999999999999876544 346789999999999999999999999999987543211
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 87 PGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYR 129 (279)
Q Consensus 87 ~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~ 129 (279)
.++++.|++++++..|+++|+++|.+|+.+|..|+..|+
T Consensus 79 ----~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 79 ----SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred ----cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 135678999999999999999999999999888776653
No 9
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.59 E-value=1.6e-14 Score=99.48 Aligned_cols=63 Identities=41% Similarity=0.646 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 183 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 245 (279)
Q Consensus 183 ~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~ 245 (279)
+|+++|..|+.+|.+|++||.+|+.+|.+||++||+|+.||+.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999999999999999999999999999999999999986
No 10
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=99.54 E-value=2.2e-13 Score=102.73 Aligned_cols=103 Identities=25% Similarity=0.426 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQK 86 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 86 (279)
+|+.|++.|++|+..|..|+..+.+|..+|...+..++ .+..++.+++.++.+|+.+++.|+..|+.|+......
T Consensus 1 ~~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~--~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~--- 75 (103)
T PF00804_consen 1 FMPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPD--QDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDS--- 75 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Confidence 68999999999999999999999999999999877655 3467899999999999999999999999999985421
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 023623 87 PGCGKGTGVDRSRTATTLGLKKKFKDKM 114 (279)
Q Consensus 87 ~~~~~~~~~~rir~~~~~~L~~~f~~~~ 114 (279)
.+.++++++.|++++++.+|+.+|+++|
T Consensus 76 ~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 76 EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 1234567889999999999999999987
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.47 E-value=2.5e-13 Score=92.31 Aligned_cols=59 Identities=44% Similarity=0.653 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 182 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 240 (279)
Q Consensus 182 ~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA 240 (279)
++|++++.+|+.+|.+|++||.+|+.+|.+||++||+|++|++.+..+++.|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999875
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.34 E-value=1.1e-11 Score=85.77 Aligned_cols=63 Identities=38% Similarity=0.548 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 178 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 240 (279)
Q Consensus 178 l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA 240 (279)
...+++|+.+|..|+.+|.++++||.+|+.+|.+||++||+|+++++.+..++..|...|.+|
T Consensus 4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 456889999999999999999999999999999999999999999999999999999999875
No 13
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2e-06 Score=73.82 Aligned_cols=225 Identities=15% Similarity=0.243 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 023623 9 ENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPG 88 (279)
Q Consensus 9 ~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~ 88 (279)
..|+....++.+..+.++..+.+-..+-.. .+. ....++..+. +.|...++.|+....-..+.++
T Consensus 6 Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~-----~~~-------~~~~~t~~lr---~~i~~~~edl~~~~~il~~~~~ 70 (235)
T KOG3202|consen 6 DPFFRVKNETLKLSEEIQGLYQRRSELLKD-----TGS-------DAEELTSVLR---RSIEEDLEDLDELISILERNPS 70 (235)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccc-------hhHHHHHHHH---HHhHHHHHHHHHHHHHHHhCcc
Confidence 346666666766666666666665555543 111 2223333333 2222222222222111111122
Q ss_pred C-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhh-cCChhHHHHHHH
Q 023623 89 C-GKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIE-TGDSEQIFQKAI 166 (279)
Q Consensus 89 ~-~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie-~~~~~~~~q~~l 166 (279)
. +-...+.+-|+..+..+..++...-..|.. ..+... .-|. ...+++..+...+.+-. .|.. +.+..
T Consensus 71 ~~~ide~El~~R~~~i~~lr~q~~~~~~~~~~--~~~~~~----~~r~--~l~~~~~~~~~~~~~~~~~~~D--~v~~~- 139 (235)
T KOG3202|consen 71 KFGIDEFELSRRRRFIDNLRTQLRQMKSKMAM--SGFANS----NIRD--ILLGPEKSPNLDEAMSRASGLD--NVQEI- 139 (235)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccccc----cchh--hhcCCCCCCchhhhHHHhhccC--cHHHH-
Confidence 1 122346678889999888888777766654 111111 1122 22344444322222211 1111 00110
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023623 167 QEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 246 (279)
Q Consensus 167 ~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~ 246 (279)
. + ..-.-+++-...+..|+.+|.-++.|=..|+.=+++||.+||.-++-++.+...+..+.+.|.+-.+ .++
T Consensus 140 ~-----~--~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s 211 (235)
T KOG3202|consen 140 V-----Q--LQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MAS 211 (235)
T ss_pred H-----H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 0 0 0011256667788999999999999999999999999999999999999999999999999999888 444
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 023623 247 SRKWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 247 ~rk~~~~~i~i~~ii~~~i~~ 267 (279)
.+.+||++++++.++++++++
T Consensus 212 ~~~~~~~il~l~~~~~lvv~i 232 (235)
T KOG3202|consen 212 QCSQWCAILLLVGLLLLVVII 232 (235)
T ss_pred cccchhHHHHHHHHHHHHHHH
Confidence 445455444444444444433
No 14
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=98.64 E-value=1.6e-06 Score=65.28 Aligned_cols=98 Identities=13% Similarity=0.259 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchhHH
Q 023623 18 IDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDR 97 (279)
Q Consensus 18 i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~r 97 (279)
|...|..|+..+..|+++.+.. +++.+...++++|+.+...++.+++.+...|+.+.... +....++
T Consensus 1 is~~l~~in~~v~~l~k~~~~l---Gt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~----------~~~~~~~ 67 (102)
T PF14523_consen 1 ISSNLFKINQNVSQLEKLVNQL---GTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLS----------SDRSNDR 67 (102)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH----SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH--------------HHH
T ss_pred CchHHHHHHHHHHHHHHHHHHh---CCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhhhhhH
Confidence 4677889999999999888763 46778889999999999999999999999999997651 1134678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 98 SRTATTLGLKKKFKDKMGEFQVLRENIHQEY 128 (279)
Q Consensus 98 ir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~ 128 (279)
..+.+...|+++|..++++|+.+|..|....
T Consensus 68 ~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~ 98 (102)
T PF14523_consen 68 QQKLQREKLSRDFKEALQEFQKAQRRYAEKE 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8889999999999999999999876665443
No 15
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.45 E-value=0.00012 Score=64.50 Aligned_cols=89 Identities=25% Similarity=0.379 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 023623 177 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAII 256 (279)
Q Consensus 177 ~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~ 256 (279)
.+.+..+--++++.||+.+.|+..|-.-++.-|-+|..-||.|-.++..|.+|++.|+..|.+|.....+.|.|+.++++
T Consensus 223 l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~ll 302 (316)
T KOG3894|consen 223 LLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLL 302 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHH
Confidence 45666777789999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHH
Q 023623 257 ILLIIVAII 265 (279)
Q Consensus 257 i~~ii~~~i 265 (279)
|+..+++++
T Consensus 303 vlsf~lLFl 311 (316)
T KOG3894|consen 303 VLSFSLLFL 311 (316)
T ss_pred HHHHHHHHH
Confidence 877776654
No 16
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.92 E-value=0.00046 Score=50.56 Aligned_cols=58 Identities=17% Similarity=0.322 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNS 247 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~ 247 (279)
.+.++...+.|+.++..+=-.-+.+.|+-|+.++...+.-.+....-.+ .|.+-+++.
T Consensus 4 kl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k---~a~~l~r~~ 61 (89)
T PF00957_consen 4 KLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKK---NAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHH---HHHHHHHHH
Confidence 4667778888888877777777889999999999887776555444433 444444433
No 17
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.11 Score=46.49 Aligned_cols=65 Identities=22% Similarity=0.351 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 176 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 240 (279)
Q Consensus 176 ~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA 240 (279)
...+++..=++-|..|.+--.+++.|-..=+.||..=...+.+-..+|+++.++|.+|...=++|
T Consensus 203 ~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkka 267 (297)
T KOG0810|consen 203 ERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKA 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666677777777777777777777777887777777788888888888888885544433
No 18
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.011 Score=44.88 Aligned_cols=81 Identities=17% Similarity=0.309 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHH
Q 023623 186 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR----KWMCIAIIILLII 261 (279)
Q Consensus 186 ~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~r----k~~~~~i~i~~ii 261 (279)
+.+.+++..+.|+-++..+==.=|-|-|+-|+.+++-.++=.+. |..--..|.+.+++.- |++.|++++++|+
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~---as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~ 105 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAG---ASQFEKTAVKLKRKMWWKNCKMRIILGLVIIIL 105 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888887778889999999998776653322 2222334555555442 3333333344444
Q ss_pred HHHHHHHH
Q 023623 262 VAIIVVAV 269 (279)
Q Consensus 262 ~~~i~~~i 269 (279)
+++|++++
T Consensus 106 l~iiii~~ 113 (116)
T KOG0860|consen 106 LVVIIIYI 113 (116)
T ss_pred HHHHHHHH
Confidence 34343433
No 19
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.13 Score=43.78 Aligned_cols=51 Identities=6% Similarity=0.214 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 193 RKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 243 (279)
Q Consensus 193 ~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~ 243 (279)
+.|.-|-.+..+|..|..+=.+++-.=+.||+....++..|..++..+..+
T Consensus 185 ~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h 235 (280)
T COG5074 185 QEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGH 235 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhh
Confidence 344444444444444444444444444444444444444444444444433
No 20
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.07 E-value=0.005 Score=46.56 Aligned_cols=79 Identities=19% Similarity=0.344 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 023623 185 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAI 264 (279)
Q Consensus 185 ~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~ 264 (279)
++.+..|..-|.-|..|-.|+..=|..|..++|.++.....+......+-..++.-.+. ..++.+||.+++.+|++++
T Consensus 35 ee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~~fi 112 (118)
T KOG3385|consen 35 EEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVAFFI 112 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHH
Confidence 45667888888889999999999999999999999999999999999999988765554 5567777666655555443
Q ss_pred H
Q 023623 265 I 265 (279)
Q Consensus 265 i 265 (279)
+
T Consensus 113 ~ 113 (118)
T KOG3385|consen 113 L 113 (118)
T ss_pred h
Confidence 3
No 21
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=96.90 E-value=0.019 Score=50.32 Aligned_cols=79 Identities=22% Similarity=0.346 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 023623 186 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAII 265 (279)
Q Consensus 186 ~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i 265 (279)
.++..+.+++.+=...| +..+.+-..+|++.+..++.....++.+...|... .+++.+||.|++++++++++|+
T Consensus 170 ~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~---~~~~~~~~~~~~i~~v~~~Fi~ 243 (251)
T PF09753_consen 170 EEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH---SSKSWGCWTWLMIFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcccHHHHHHHHHHHHHHHH
Confidence 35555556555555555 45689999999999999999999999999888754 2333335544444444444433
Q ss_pred HHHHh
Q 023623 266 VVAVI 270 (279)
Q Consensus 266 ~~~i~ 270 (279)
++.++
T Consensus 244 mvl~i 248 (251)
T PF09753_consen 244 MVLFI 248 (251)
T ss_pred HHHHh
Confidence 33333
No 22
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=3.1 Score=36.80 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 023623 179 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIIL 258 (279)
Q Consensus 179 ~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~ 258 (279)
+.+++=+.+|..+..-..+|..|..+=+.+|..=.+-|++-..||+++..+..+|...=+++++.. --..|++++++
T Consensus 180 q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~---~~ll~v~~~v~ 256 (269)
T KOG0811|consen 180 QAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK---CILLLVGGPVG 256 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch---hhhhHHHHHHH
Confidence 345555666777777777777777777777777777777777777777777777766544433322 33445555555
Q ss_pred HHHHHHH
Q 023623 259 LIIVAII 265 (279)
Q Consensus 259 ~ii~~~i 265 (279)
+++.+++
T Consensus 257 lii~l~i 263 (269)
T KOG0811|consen 257 LIIGLII 263 (269)
T ss_pred HHHHHHH
Confidence 5554444
No 23
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=5.8 Score=33.62 Aligned_cols=57 Identities=16% Similarity=0.304 Sum_probs=38.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 023623 209 VDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIV 266 (279)
Q Consensus 209 V~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~ 266 (279)
.+.|-+.|.+=-.-.-.+-+|+.++.+-|..-.+.-- ..||.|.+|+++++++++++
T Consensus 158 L~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~-~nk~~~~aii~~l~~~il~i 214 (220)
T KOG1666|consen 158 LHGQREQLERARERLRETDANLGKSRKILTTMTRRLI-RNKFTLTAIIALLVLAILLI 214 (220)
T ss_pred HHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888888888888888887765443332 23677776666665555443
No 24
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.91 E-value=0.89 Score=40.25 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 184 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 184 R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
=...+..|-..+..|..|=.||+.-|+.|.+.||+|+++|+..-..|..+++.+++
T Consensus 216 iD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 216 IDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 44567788888999999999999999999999999999999999999998887654
No 25
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=91.61 E-value=3.9 Score=29.51 Aligned_cols=69 Identities=28% Similarity=0.440 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH
Q 023623 175 MDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIA 254 (279)
Q Consensus 175 ~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~ 254 (279)
...++.+-+|.+.|..|+..-.+|.+ .|..+- +....+++ ++-.++-|+++++
T Consensus 20 ~~Ni~~ll~Rge~L~~L~~kt~~L~~------------------------~a~~F~-k~a~~l~r--~~~~~~~k~~~i~ 72 (89)
T PF00957_consen 20 RENIDKLLERGEKLEELEDKTEELSD------------------------NAKQFK-KNAKKLKR--KMWWRNYKLYIII 72 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHH-HHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHH------------------------HhHHHH-HHHHHHHH--HHHHHHHHHHHhH
Confidence 34566677777777666654443332 222222 23334433 2333444666666
Q ss_pred HHHHHHHHHHHHHHHh
Q 023623 255 IIILLIIVAIIVVAVI 270 (279)
Q Consensus 255 i~i~~ii~~~i~~~i~ 270 (279)
++++++++++++++++
T Consensus 73 ~~iv~~~~~~i~~~~~ 88 (89)
T PF00957_consen 73 IIIVIIIILIIIIVIC 88 (89)
T ss_dssp HHHHHHHHHHHHHTT-
T ss_pred HhhhhhhhhHHHHHHh
Confidence 6666666666655554
No 26
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=91.17 E-value=4.6 Score=29.49 Aligned_cols=55 Identities=15% Similarity=0.315 Sum_probs=32.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 023623 209 VDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVA 263 (279)
Q Consensus 209 V~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~ 263 (279)
..+|...|....+.......-+..+.+-+.+..+..+.-+.++++++++++++++
T Consensus 31 L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~ 85 (92)
T PF03908_consen 31 LEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVL 85 (92)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4456666666666666666667777777766655555444444444444444433
No 27
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.96 E-value=14 Score=32.98 Aligned_cols=233 Identities=13% Similarity=0.226 Sum_probs=137.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 023623 12 FKKVQDIDKEYEKLEKLLKKLQGAHEESKSVT---KAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPG 88 (279)
Q Consensus 12 ~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~---~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~ 88 (279)
.++|+.-=..+..--..+.+....|-.=.... +..+-+.+..+|..+.....+.+..++........+-.-..
T Consensus 63 ~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~---- 138 (305)
T KOG0809|consen 63 AEEVDYYLSRVRRKIDELGKAHAKHLRPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLR---- 138 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHH----
Confidence 33444333344444445566666665432211 12223456666666666666666666666642222210000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHH
Q 023623 89 CGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENI---HQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA 165 (279)
Q Consensus 89 ~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~---~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~ 165 (279)
....+.-..+...++.+|...-..|-+--..- -..|...... .+..|+ |+.+... .|.+++
T Consensus 139 ----~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~---~~~~~d--d~d~~~~-------~~qe~q 202 (305)
T KOG0809|consen 139 ----KNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDN---TVDLPD--DEDFSDR-------TFQEQQ 202 (305)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccc---cccCcc--hhhhhhh-------hHHHHH
Confidence 01234445666778888888877775422111 1234444432 122232 3332211 121222
Q ss_pred H-H-HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 166 I-Q-EQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 243 (279)
Q Consensus 166 l-~-~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~ 243 (279)
+ . .+....+..-..+|.+=.+-|..|..-..||..|..|=+++|.-=+--|+++-..++.|...+.+|.. ..+.
T Consensus 203 l~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~----yQk~ 278 (305)
T KOG0809|consen 203 LMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAER----YQKR 278 (305)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHH----HHhc
Confidence 2 2 22233345566789999999999999999999999999999999999999999999999999999975 5667
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHH
Q 023623 244 QKNSRKWMCIAIIILLIIVAIIVVA 268 (279)
Q Consensus 244 ~~~~rk~~~~~i~i~~ii~~~i~~~ 268 (279)
-++.+-.+++.++|+++++++|+.+
T Consensus 279 ~~k~~~i~~L~l~ii~llvllilk~ 303 (305)
T KOG0809|consen 279 NKKMKVILMLTLLIIALLVLLILKK 303 (305)
T ss_pred CCceEehHHHHHHHHHHHHHHHhhc
Confidence 7778766655555555555556543
No 28
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=89.50 E-value=0.49 Score=33.69 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=6.5
Q ss_pred HHHHhccccCCCC
Q 023623 266 VVAVIKPWSSNKG 278 (279)
Q Consensus 266 ~~~i~~~~~~~~~ 278 (279)
++++++.++|+++
T Consensus 39 LlImlfqsSS~~~ 51 (85)
T PF10717_consen 39 LLIMLFQSSSNGN 51 (85)
T ss_pred HHHHHHhccCCCC
Confidence 3445555555543
No 29
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=86.63 E-value=16 Score=31.81 Aligned_cols=81 Identities=14% Similarity=0.255 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch-hHHHHH
Q 023623 178 LAEIQERHDAVR-DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK-WMCIAI 255 (279)
Q Consensus 178 l~~i~~R~~eI~-~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk-~~~~~i 255 (279)
+..+-.+|+.++ +|...|..|..-.++=+... +..|..=..-++.+...++.-...|..+...-+...+ .+.|+.
T Consensus 154 ~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~ 230 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWT 230 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 444555666665 67777777776666654443 3344444555677777777777778877766666554 444444
Q ss_pred HHHHHH
Q 023623 256 IILLII 261 (279)
Q Consensus 256 ~i~~ii 261 (279)
++++++
T Consensus 231 ~~~i~~ 236 (251)
T PF09753_consen 231 WLMIFV 236 (251)
T ss_pred HHHHHH
Confidence 443333
No 30
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=85.33 E-value=0.56 Score=33.69 Aligned_cols=36 Identities=25% Similarity=0.525 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 023623 229 HVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAI 264 (279)
Q Consensus 229 ~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~ 264 (279)
+-.....+...|+++.+++|+|.++.++++++++++
T Consensus 45 ~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~i~ 80 (82)
T PF04505_consen 45 RSRYAAGDYEGARRASRKAKKWSIIAIIIGIVIIIL 80 (82)
T ss_pred HHHHHCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhe
Confidence 334455678889999999999988887777766554
No 31
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.05 E-value=3.3 Score=34.68 Aligned_cols=82 Identities=16% Similarity=0.208 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc----hhHHHHHHHHHHHHH
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR----KWMCIAIIILLIIVA 263 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~r----k~~~~~i~i~~ii~~ 263 (279)
|.++-..+.|+..+..+==..|-+-|| +||-=|+.|..=..++..--+.+++..++.- |..|+.++++++++.
T Consensus 127 lskvkaqv~evk~vM~eNIekvldRGe---kiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl~~iv~~~~~~~iy 203 (217)
T KOG0859|consen 127 LAKVKAQVTEVKGVMMENIEKVLDRGE---KIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKLKLIVLGVSISLIY 203 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC---eEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccceehhhhhHHHHHHH
Confidence 445555666666665555555556665 3444555555555555555555555554331 122344444444444
Q ss_pred HHHHHHhcc
Q 023623 264 IIVVAVIKP 272 (279)
Q Consensus 264 ~i~~~i~~~ 272 (279)
+|+.++...
T Consensus 204 iiv~~~CgG 212 (217)
T KOG0859|consen 204 IIVARRCGG 212 (217)
T ss_pred HHHHHhccC
Confidence 444444443
No 32
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=84.52 E-value=2.3 Score=28.46 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=3.7
Q ss_pred hHHHHHHHH
Q 023623 250 WMCIAIIIL 258 (279)
Q Consensus 250 ~~~~~i~i~ 258 (279)
|++++++++
T Consensus 40 ~i~~~~~i~ 48 (59)
T PF09889_consen 40 YIFFGIFIL 48 (59)
T ss_pred HHHHHHHHH
Confidence 444444433
No 33
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=83.70 E-value=27 Score=29.93 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 98 SRTATTLGLKKKFKDKMGEFQVLRENIHQEYR 129 (279)
Q Consensus 98 ir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~ 129 (279)
.|.-....++..|.++...|+..-.+.+..|.
T Consensus 68 ~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~ 99 (230)
T PF03904_consen 68 IREKNLKEIKSSLEETTKDFIDKTEKVHNDFQ 99 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567777888888888865444444443
No 34
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=83.68 E-value=3.7 Score=26.75 Aligned_cols=35 Identities=20% Similarity=0.351 Sum_probs=20.6
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHhcccc
Q 023623 240 AKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWS 274 (279)
Q Consensus 240 A~~~~~~~rk~~~~~i~i~~ii~~~i~~~i~~~~~ 274 (279)
+-+.=++++.-+..+++++++++++++.+.+.|+.
T Consensus 8 ~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~~ 42 (56)
T PF12911_consen 8 AWRRFRRNKLAVIGLIILLILVLLAIFAPFISPYD 42 (56)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33333445555555555566666667777888873
No 35
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=81.97 E-value=2.4 Score=30.23 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccCCCC
Q 023623 250 WMCIAIIILLIIVAIIVVAVIKPWSSNKG 278 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~~i~~~~~~~~~ 278 (279)
.+..++++++||+++|+++=-.+-++++|
T Consensus 26 ~lMtILivLVIIiLlImlfqsSS~~~~s~ 54 (85)
T PF10717_consen 26 TLMTILIVLVIIILLIMLFQSSSNGNSSS 54 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 34556666666777777776665555544
No 36
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=81.00 E-value=72 Score=32.92 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQ 244 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~ 244 (279)
+..+.+.+..+..-+.+++.-+-.+ +...+..-...+..++........++..|.
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR 413 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSYR 413 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 3455556666666666666666555 555566666666667766666666666553
No 37
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=80.46 E-value=36 Score=29.14 Aligned_cols=72 Identities=18% Similarity=0.337 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNS-RKWMCIAIIILLIIVAI 264 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~-rk~~~~~i~i~~ii~~~ 264 (279)
++..+.+++.+-.--|++. +.+-.+.+-.-+--++....-...+..-+.+ |.++. .-|..|..+|++|+.+|
T Consensus 159 sll~LArslKtnalAfqsa---lkeDnQvl~~~~k~~D~N~~~L~~~Serve~---y~ksk~s~wf~~~miI~v~~sFV 231 (244)
T KOG2678|consen 159 SLLKLARSLKTNALAFQSA---LKEDNQVLGAAEKGIDVNSQGLMDVSERVEK---YDKSKLSYWFYITMIIFVILSFV 231 (244)
T ss_pred HHHHHHHHHHHhHHHHHHH---HHhhHHHHHHHHHHHhHHHHHHHhhhHHHHH---HHHhhhhHHHHHHHHHHHHHHHH
Confidence 3444444444443334332 3333333334333344433334334444433 33333 23444444443333333
No 38
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=76.11 E-value=20 Score=23.82 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 230 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v 230 (279)
+++.++..+..|-..|.....=-..+++.+++.|.+++....|+
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46778888889999999998889999999999999999876665
No 39
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=75.59 E-value=1.2e+02 Score=32.54 Aligned_cols=63 Identities=10% Similarity=0.101 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 5 ELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSK 72 (279)
Q Consensus 5 ~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~ 72 (279)
+..+..++.+++.+...+........+.++..++.+.. .+..+.+++.-..+...++.+|+.-
T Consensus 1421 ~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~Aq~~~~~-----a~as~~q~~~s~~el~~Li~~v~~F 1483 (1758)
T KOG0994|consen 1421 DTQLRSKLAEAEQTLSMVREAKLSASEAQQSAQRALEQ-----ANASRSQMEESNRELRNLIQQVRDF 1483 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888887777777777666654321 2233455555555555555555443
No 40
>PRK04325 hypothetical protein; Provisional
Probab=74.69 E-value=26 Score=24.50 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 232 (279)
|..||..+.-.-+...+|+..|.+|...|++....+..-.+.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888999999999999999988887776665544
No 41
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=74.25 E-value=11 Score=30.89 Aligned_cols=32 Identities=19% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH
Q 023623 234 NTALQKAKKLQKNSR-KWMCIAIIILLIIVAII 265 (279)
Q Consensus 234 ~~~L~kA~~~~~~~r-k~~~~~i~i~~ii~~~i 265 (279)
..++..|+..++++. -|.++++++++.+++++
T Consensus 138 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIlL 170 (171)
T PRK08307 138 EREEEEAEEEQKKNEKMYKYLGFLAGLLIVILL 170 (171)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh
Confidence 344555666665554 47788888887776643
No 42
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=73.22 E-value=80 Score=29.38 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023623 182 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 225 (279)
Q Consensus 182 ~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 225 (279)
+=|++-+.+.-....|||+ .+++.|=.++..|=.+|+|.-..
T Consensus 305 RyR~erLEEqLNdlteLqQ--nEi~nLKqElasmeervaYQsyE 346 (455)
T KOG3850|consen 305 RYRYERLEEQLNDLTELQQ--NEIANLKQELASMEERVAYQSYE 346 (455)
T ss_pred HHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443 46666666666666666554433
No 43
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=72.81 E-value=13 Score=30.53 Aligned_cols=32 Identities=22% Similarity=0.435 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH
Q 023623 234 NTALQKAKKLQKNSR-KWMCIAIIILLIIVAII 265 (279)
Q Consensus 234 ~~~L~kA~~~~~~~r-k~~~~~i~i~~ii~~~i 265 (279)
..++..|+.-+++.. -|.++++++++.+++++
T Consensus 137 ~~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lvIll 169 (170)
T TIGR02833 137 ERQLTEAEDEQKKNEKMYRYLGVLVGLMIVLLL 169 (170)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 344555666665554 47788888887776643
No 44
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=71.65 E-value=30 Score=23.78 Aligned_cols=48 Identities=17% Similarity=0.237 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 234 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~ 234 (279)
.|..||..+.-.-+...+|+..|..|...||+.+..+..-.+.+....
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888888888899999999999888888777665543
No 45
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=71.60 E-value=13 Score=24.97 Aligned_cols=15 Identities=7% Similarity=0.131 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 023623 251 MCIAIIILLIIVAII 265 (279)
Q Consensus 251 ~~~~i~i~~ii~~~i 265 (279)
.-+++++++++++++
T Consensus 38 ~~~i~~~~~i~~l~v 52 (59)
T PF09889_consen 38 TQYIFFGIFILFLAV 52 (59)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445444444443433
No 46
>PRK00295 hypothetical protein; Provisional
Probab=71.13 E-value=31 Score=23.72 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 232 (279)
|..||..+.-.-+...+|+..|..|...||.....+..-.+.+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888889999999999999999988887776665554
No 47
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.36 E-value=42 Score=25.69 Aligned_cols=42 Identities=19% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHh-hccchhHHHHHHHHHHHHHHHHH
Q 023623 226 AVDHVQSGNTALQKAKKLQ-KNSRKWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 226 a~~~v~~a~~~L~kA~~~~-~~~rk~~~~~i~i~~ii~~~i~~ 267 (279)
+...-+++...|++--=.+ -|.+-++|++++++++|+++.++
T Consensus 72 ~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 72 GASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444455555444333 48888888888888877777665
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=70.33 E-value=67 Score=27.27 Aligned_cols=41 Identities=7% Similarity=0.149 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 199 QQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 199 ~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
.+.-.+|..-+.+-...+..++..-.........+..++..
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555666666666666666666666543
No 49
>PHA02844 putative transmembrane protein; Provisional
Probab=69.16 E-value=6.6 Score=27.38 Aligned_cols=9 Identities=0% Similarity=-0.237 Sum_probs=3.6
Q ss_pred chhHHHHHH
Q 023623 248 RKWMCIAII 256 (279)
Q Consensus 248 rk~~~~~i~ 256 (279)
..|+.++|+
T Consensus 46 ~~~~~~ii~ 54 (75)
T PHA02844 46 SSTKIWILT 54 (75)
T ss_pred hhHHHHHHH
Confidence 344443333
No 50
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=69.07 E-value=17 Score=29.65 Aligned_cols=31 Identities=16% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcc-chhHHHHHHHHHHHHHHH
Q 023623 235 TALQKAKKLQKNS-RKWMCIAIIILLIIVAII 265 (279)
Q Consensus 235 ~~L~kA~~~~~~~-rk~~~~~i~i~~ii~~~i 265 (279)
.++..|++-.++. |-|.+.++++++.+++++
T Consensus 138 ~~~~~a~~~~~~~~Klyr~LGvl~G~~lvIlL 169 (170)
T PF09548_consen 138 QQLEEAREEAKKKGKLYRSLGVLGGLFLVILL 169 (170)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 3444555555444 446777877777666543
No 51
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=68.97 E-value=8.3 Score=27.13 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcc
Q 023623 250 WMCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
|+++++++++++++++++.++.-
T Consensus 1 ~ii~~~~~g~~~ll~~v~~~~~~ 23 (75)
T PF14575_consen 1 LIIASIIVGVLLLLVLVIIVIVC 23 (75)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHCC
T ss_pred CEEehHHHHHHHHHHhheeEEEE
Confidence 34444444444444444334443
No 52
>PHA02975 hypothetical protein; Provisional
Probab=68.63 E-value=6.4 Score=26.98 Aligned_cols=12 Identities=25% Similarity=0.274 Sum_probs=5.5
Q ss_pred ccchhHHHHHHH
Q 023623 246 NSRKWMCIAIII 257 (279)
Q Consensus 246 ~~rk~~~~~i~i 257 (279)
++..|+++++++
T Consensus 40 ~~~~~~~~ii~i 51 (69)
T PHA02975 40 KSSLSIILIIFI 51 (69)
T ss_pred CCchHHHHHHHH
Confidence 444454444443
No 53
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=67.51 E-value=70 Score=33.00 Aligned_cols=44 Identities=11% Similarity=0.253 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 023623 193 RKLLELQQIFLDMAVLVDAQGDMLDN-IESQVSSAVDHVQSGNTA 236 (279)
Q Consensus 193 ~sI~eL~~lF~dla~LV~~Qge~id~-Ie~nv~~a~~~v~~a~~~ 236 (279)
..+.++.....+...-+..+.+.+-. +..++......++.....
T Consensus 357 ~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~ 401 (806)
T PF05478_consen 357 DVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRS 401 (806)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Confidence 44445555555555556666655544 344455555555444333
No 54
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=66.37 E-value=1.4e+02 Score=29.62 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 023623 179 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIES 221 (279)
Q Consensus 179 ~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~ 221 (279)
.+++ +....++.-+.+..||+.|.+|-..|.+=|...-.|.+
T Consensus 541 rdAK-kDe~~rkaYK~La~lh~~c~~Li~~v~~tG~~~rEird 582 (594)
T PF05667_consen 541 RDAK-KDEAARKAYKLLASLHENCSQLIETVEETGTISREIRD 582 (594)
T ss_pred HHhh-cCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3444 66778899999999999999999999999988766643
No 55
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=66.33 E-value=49 Score=24.20 Aligned_cols=62 Identities=16% Similarity=0.293 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 11 FFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT 82 (279)
Q Consensus 11 f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~ 82 (279)
|+...+++...|..++.....-..+.... . ....+..+..++...+..+...|.+|++....
T Consensus 3 F~~v~~ev~~sl~~l~~~~~~~~~~~~~~-------~---~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~i 64 (97)
T PF09177_consen 3 FFVVKDEVQSSLDRLESLYRRWQRLRSDT-------S---SSEELKWLKRELRNALQSIEWDLEDLEEAVRI 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHC-------C----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcccC-------C---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888877777666655554321 1 23466677777777888888888888776543
No 56
>PHA03054 IMV membrane protein; Provisional
Probab=66.03 E-value=9.4 Score=26.35 Aligned_cols=8 Identities=38% Similarity=0.912 Sum_probs=3.2
Q ss_pred hhHHHHHH
Q 023623 249 KWMCIAII 256 (279)
Q Consensus 249 k~~~~~i~ 256 (279)
.|++++++
T Consensus 47 ~~~~~ii~ 54 (72)
T PHA03054 47 GWYWLIII 54 (72)
T ss_pred hHHHHHHH
Confidence 34443333
No 57
>PHA02819 hypothetical protein; Provisional
Probab=65.61 E-value=9.6 Score=26.31 Aligned_cols=8 Identities=13% Similarity=-0.118 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 023623 249 KWMCIAII 256 (279)
Q Consensus 249 k~~~~~i~ 256 (279)
.|++++++
T Consensus 45 ~~~~~ii~ 52 (71)
T PHA02819 45 LRYYLIIG 52 (71)
T ss_pred hHHHHHHH
Confidence 34433333
No 58
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=65.17 E-value=1.5 Score=34.93 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhhccchh
Q 023623 233 GNTALQKAKKLQKNSRKW 250 (279)
Q Consensus 233 a~~~L~kA~~~~~~~rk~ 250 (279)
|..-|.|-.+.+-+.+|.
T Consensus 115 GyDsLLKkKEae~kr~K~ 132 (159)
T PF06789_consen 115 GYDSLLKKKEAELKRSKV 132 (159)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 444555544444444443
No 59
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=64.88 E-value=11 Score=36.33 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Q 023623 215 MLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKW 250 (279)
Q Consensus 215 ~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~ 250 (279)
.+| |..+..++...+++|...|.++.+.=.+..+|
T Consensus 433 PlD-IS~eL~~vn~sL~~A~~~L~~Sn~iL~~v~~~ 467 (490)
T PF00523_consen 433 PLD-ISSELGQVNNSLNNAKDLLDKSNQILDSVNPG 467 (490)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--
T ss_pred ccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344 55555555555555555555555555555443
No 60
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=64.85 E-value=46 Score=23.42 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023623 9 ENFFKKVQDIDKEYEKLEKLL 29 (279)
Q Consensus 9 ~~f~~~v~~i~~~i~~i~~~i 29 (279)
..|...++++..+|......+
T Consensus 4 ~~f~~~~~~l~~Wl~~~e~~l 24 (105)
T PF00435_consen 4 QQFQQEADELLDWLQETEAKL 24 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444445555544444444443
No 61
>PHA02414 hypothetical protein
Probab=64.29 E-value=56 Score=24.12 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 230 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v 230 (279)
+-..|+..+.||++|..-|..=|.-|.+-=-.|-|.++.-.+.+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHH
Confidence 45678899999999998887777777777777777777744433
No 62
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=63.74 E-value=60 Score=24.33 Aligned_cols=16 Identities=6% Similarity=0.324 Sum_probs=10.2
Q ss_pred chhHHHHHHHHHHHHH
Q 023623 248 RKWMCIAIIILLIIVA 263 (279)
Q Consensus 248 rk~~~~~i~i~~ii~~ 263 (279)
++|+-+++-..+-+++
T Consensus 82 ~PWq~VGvaAaVGlll 97 (104)
T COG4575 82 NPWQGVGVAAAVGLLL 97 (104)
T ss_pred CCchHHHHHHHHHHHH
Confidence 5788777766554444
No 63
>PRK14762 membrane protein; Provisional
Probab=63.62 E-value=13 Score=20.19 Aligned_cols=11 Identities=27% Similarity=0.501 Sum_probs=4.3
Q ss_pred HHHHHHHHHHh
Q 023623 260 IIVAIIVVAVI 270 (279)
Q Consensus 260 ii~~~i~~~i~ 270 (279)
++.+.++..|+
T Consensus 13 ligllvvtgvf 23 (27)
T PRK14762 13 LIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHH
Confidence 33333334443
No 64
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=62.92 E-value=2 Score=41.82 Aligned_cols=67 Identities=13% Similarity=0.330 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 8 LENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 8 ~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
-+.|.+....|...+.+....+.+++.-.++. +.....|-.++...-.-|+..+..|..+|+.++.+
T Consensus 254 A~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q-----~~aL~~L~~qL~nnF~AISssI~dIy~RLd~leAd 320 (610)
T PF01601_consen 254 ANSFNKAIGNIQLGFTTTASALNKIQDVVNQQ-----GQALNQLTSQLSNNFGAISSSIQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhc
Confidence 35789999999999999999999888777642 22333444555555555777777788888888776
No 65
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=62.55 E-value=7.7 Score=25.17 Aligned_cols=24 Identities=29% Similarity=0.676 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC
Q 023623 253 IAIIILLIIVAIIVVAVIKPWSSN 276 (279)
Q Consensus 253 ~~i~i~~ii~~~i~~~i~~~~~~~ 276 (279)
..++.+++++++++++++.||=+.
T Consensus 17 ~a~~gl~il~~~vl~ai~~p~~~p 40 (56)
T PF12911_consen 17 LAVIGLIILLILVLLAIFAPFISP 40 (56)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCC
Confidence 456666777777778888887543
No 66
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=61.60 E-value=9.2 Score=32.34 Aligned_cols=19 Identities=21% Similarity=0.674 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 023623 249 KWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~~ 267 (279)
..+|++||+|+++++.+++
T Consensus 130 mLIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 130 MLICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567666666666655543
No 67
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=61.18 E-value=60 Score=23.50 Aligned_cols=72 Identities=14% Similarity=0.207 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhccchhHHHHHHHHHHHHH
Q 023623 193 RKLLELQQIFLDMAVLVDAQGD-MLDNIESQVSSAVDHVQSGNTALQ--------KAKKLQKNSRKWMCIAIIILLIIVA 263 (279)
Q Consensus 193 ~sI~eL~~lF~dla~LV~~Qge-~id~Ie~nv~~a~~~v~~a~~~L~--------kA~~~~~~~rk~~~~~i~i~~ii~~ 263 (279)
.-+.++.++...++....+..+ +-++++..++.+.+....+...+. .+..|- +.++|.-+++.+++-+++
T Consensus 9 ~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V-~e~P~~svgiAagvG~ll 87 (94)
T PF05957_consen 9 QLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYV-RENPWQSVGIAAGVGFLL 87 (94)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHChHHHHHHHHHHHHHH
Confidence 3334444444444444333322 334555555555444444333322 122222 345888777776655544
Q ss_pred HH
Q 023623 264 II 265 (279)
Q Consensus 264 ~i 265 (279)
-+
T Consensus 88 G~ 89 (94)
T PF05957_consen 88 GL 89 (94)
T ss_pred HH
Confidence 43
No 68
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=60.35 E-value=30 Score=30.02 Aligned_cols=40 Identities=28% Similarity=0.534 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHHHHHHhcc
Q 023623 233 GNTALQKAKKLQKNSRK-WMCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 233 a~~~L~kA~~~~~~~rk-~~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
+.=+..+..+.-|+.+. |+.++++.++.+++++.+.++.|
T Consensus 26 ~~~~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia~llP 66 (239)
T COG3736 26 RNWEEDRVIKLERSRRLAWRVAILFTLLAVAAVIAIAILLP 66 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33333344444444432 33333444444444444555556
No 69
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=59.53 E-value=16 Score=26.05 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHH
Q 023623 215 MLDNIESQVSSA 226 (279)
Q Consensus 215 ~id~Ie~nv~~a 226 (279)
.++.||.+....
T Consensus 10 ~L~eiEr~L~~~ 21 (82)
T PF11239_consen 10 RLEEIERQLRAD 21 (82)
T ss_pred HHHHHHHHHHhc
Confidence 777888777553
No 70
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=59.29 E-value=18 Score=24.62 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhHhhcCCCCCHHHHHHHhhc
Q 023623 126 QEYREVVERRVYTVTGKRADEETIDQLIET 155 (279)
Q Consensus 126 ~~~~~~~~r~~~~i~~~~~t~eei~~~ie~ 155 (279)
.+|++++..++.. .-|++++.++.+|++.
T Consensus 12 tEyKKrL~e~l~~-k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 12 TEYKKRLAERLRA-KLPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHHHH-H-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HCCCCCHHHHHHHHHH
Confidence 3455555443322 2389999999999875
No 71
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=58.98 E-value=20 Score=21.43 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHHHHHHH
Q 023623 248 RKWMCIAIIILLIIVAII 265 (279)
Q Consensus 248 rk~~~~~i~i~~ii~~~i 265 (279)
|.|+.+.+..++|++++|
T Consensus 14 r~Wi~F~l~mi~vFi~li 31 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALI 31 (38)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 357666555555554433
No 72
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=58.81 E-value=31 Score=23.01 Aligned_cols=12 Identities=17% Similarity=0.268 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q 023623 233 GNTALQKAKKLQ 244 (279)
Q Consensus 233 a~~~L~kA~~~~ 244 (279)
|..-|..--++|
T Consensus 11 A~~FL~RvGr~q 22 (60)
T PF06072_consen 11 ATEFLRRVGRQQ 22 (60)
T ss_pred HHHHHHHHhHHH
Confidence 334444433343
No 73
>PRK10404 hypothetical protein; Provisional
Probab=58.32 E-value=75 Score=23.68 Aligned_cols=46 Identities=15% Similarity=0.258 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHH--------HHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 023623 217 DNIESQVSSAVDHVQS--------GNTALQKAKKLQKNSRKWMCIAIIILLIIVA 263 (279)
Q Consensus 217 d~Ie~nv~~a~~~v~~--------a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~ 263 (279)
++++..+..+.+.... +..-...+..|-+. .+|.-++|.+++-+++
T Consensus 41 ~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e-~Pw~avGiaagvGlll 94 (101)
T PRK10404 41 ARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHE-KPWQGIGVGAAVGLVL 94 (101)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-CcHHHHHHHHHHHHHH
Confidence 4455555555543332 33333344444443 5898877766644444
No 74
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.21 E-value=1.2e+02 Score=25.90 Aligned_cols=56 Identities=11% Similarity=0.206 Sum_probs=29.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 023623 209 VDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAII 265 (279)
Q Consensus 209 V~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i 265 (279)
+.+|+..|-.+-.-+-....-+.=.+.-|.--.+.-+ --||++||-+|+++|++++
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~-~Dk~iF~~G~i~~~v~~yl 207 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVR-EDKIIFYGGVILTLVIMYL 207 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHH
Confidence 4567777766666666655555555554543333332 2255555555555544443
No 75
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=57.94 E-value=0.53 Score=33.58 Aligned_cols=14 Identities=21% Similarity=0.788 Sum_probs=1.7
Q ss_pred hhccchhHHHHHHH
Q 023623 244 QKNSRKWMCIAIII 257 (279)
Q Consensus 244 ~~~~rk~~~~~i~i 257 (279)
.++.|+|++++|-+
T Consensus 61 ~rkKrrwlwLlikl 74 (81)
T PF14812_consen 61 PRKKRRWLWLLIKL 74 (81)
T ss_dssp ----------TTTT
T ss_pred ccccchhHHHHHHH
Confidence 44455666554443
No 76
>PTZ00478 Sec superfamily; Provisional
Probab=57.91 E-value=36 Score=24.30 Aligned_cols=51 Identities=14% Similarity=0.155 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 023623 217 DNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 217 d~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~ 267 (279)
|.+++-+....+.+..+..=+++..+--++-....+....++.+++.+|..
T Consensus 14 ~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy 64 (81)
T PTZ00478 14 NPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGY 64 (81)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888888999999999999888777666655566555566665555543
No 77
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=57.54 E-value=14 Score=28.70 Aligned_cols=21 Identities=10% Similarity=0.199 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 023623 250 WMCIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~~i~ 270 (279)
++|+|+++++|.+++++++++
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~i 88 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCI 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhHHHHHHHHHHHHHHHHHH
Confidence 455666655555444444333
No 78
>PHA02692 hypothetical protein; Provisional
Probab=57.02 E-value=17 Score=25.06 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=3.7
Q ss_pred chhHHHHHH
Q 023623 248 RKWMCIAII 256 (279)
Q Consensus 248 rk~~~~~i~ 256 (279)
..|+.++++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 344444333
No 79
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=56.71 E-value=44 Score=28.85 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc
Q 023623 250 WMCIAIIILLIIVAIIVVAVIKPWS 274 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~~i~~~~~ 274 (279)
|++.++.++++++.++.+..+.|.+
T Consensus 41 w~va~~~~~~~~~~~~Av~~l~PLK 65 (229)
T PRK13865 41 AAVAGIAVAGNVAQAFAIATMVPLE 65 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Confidence 5444444444444444455555643
No 80
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=56.18 E-value=18 Score=24.09 Aligned_cols=9 Identities=44% Similarity=0.630 Sum_probs=3.8
Q ss_pred HHHHHHHhh
Q 023623 237 LQKAKKLQK 245 (279)
Q Consensus 237 L~kA~~~~~ 245 (279)
|.+-++.+|
T Consensus 33 l~ker~R~r 41 (64)
T COG4068 33 LNKERKRQR 41 (64)
T ss_pred HHHHHHHHH
Confidence 444444443
No 81
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=56.01 E-value=1.5e+02 Score=26.56 Aligned_cols=20 Identities=20% Similarity=0.295 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023623 101 ATTLGLKKKFKDKMGEFQVL 120 (279)
Q Consensus 101 ~~~~~L~~~f~~~~~~fq~~ 120 (279)
|+...|..+|+.+......+
T Consensus 273 nqL~~l~q~fr~a~~~lse~ 292 (384)
T KOG0972|consen 273 NQLASLMQKFRRATDTLSEL 292 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444443
No 82
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.85 E-value=65 Score=27.14 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023623 182 QERHDAVRDLERKLLELQ 199 (279)
Q Consensus 182 ~~R~~eI~~Ie~sI~eL~ 199 (279)
.+|..+.-.+|.++.+++
T Consensus 127 ~~~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 127 SNRDTALTQMENAIVEIH 144 (209)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 344445555555555544
No 83
>PRK10132 hypothetical protein; Provisional
Probab=55.76 E-value=87 Score=23.65 Aligned_cols=19 Identities=16% Similarity=0.233 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 023623 247 SRKWMCIAIIILLIIVAII 265 (279)
Q Consensus 247 ~rk~~~~~i~i~~ii~~~i 265 (279)
-++|.-++|.+++-+++-+
T Consensus 84 ~~Pw~svgiaagvG~llG~ 102 (108)
T PRK10132 84 ERPWCSVGTAAAVGIFIGA 102 (108)
T ss_pred hCcHHHHHHHHHHHHHHHH
Confidence 3589888877665554433
No 84
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=54.79 E-value=32 Score=21.68 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH
Q 023623 190 DLERKLLELQQIFLDMAVLVDAQGDM 215 (279)
Q Consensus 190 ~Ie~sI~eL~~lF~dla~LV~~Qge~ 215 (279)
.|-..+.++++++.+|-.++.+|-.-
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE 30 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKE 30 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999998888887543
No 85
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=54.49 E-value=15 Score=23.01 Aligned_cols=10 Identities=50% Similarity=1.132 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 023623 252 CIAIIILLII 261 (279)
Q Consensus 252 ~~~i~i~~ii 261 (279)
|++++|+++|
T Consensus 36 clilicllli 45 (52)
T PF04272_consen 36 CLILICLLLI 45 (52)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4333343333
No 86
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=54.23 E-value=11 Score=29.92 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 023623 251 MCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 251 ~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
+.|++-|++.+++++++.+++.
T Consensus 32 ~tILiaIvVliiiiivli~lcs 53 (189)
T PF05568_consen 32 YTILIAIVVLIIIIIVLIYLCS 53 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444443
No 87
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=54.16 E-value=19 Score=28.81 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=13.4
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHh
Q 023623 245 KNSRKWMCIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 245 ~~~rk~~~~~i~i~~ii~~~i~~~i~ 270 (279)
++.-.|.++++++++|+++++++.++
T Consensus 114 ~~~~~~~i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 114 KKPISPTILLSIGGILLAICGGIYVV 139 (145)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554443
No 88
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=54.06 E-value=48 Score=22.29 Aligned_cols=48 Identities=8% Similarity=0.107 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 023623 221 SQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVA 268 (279)
Q Consensus 221 ~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~~ 268 (279)
...+...+.+.....=++.|.+--++-.+..+....++++++.+|.+.
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf~ 52 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGFI 52 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777888888887766665555555555555555555443
No 89
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.62 E-value=44 Score=22.72 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 023623 217 DNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 217 d~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~ 267 (279)
|+++.-++-..+++..+..-+++..+--+|-...+.....++.+++.+|..
T Consensus 2 ~~~~~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki~~~~aiGf~~mG~iGf 52 (67)
T KOG3498|consen 2 DQVDQLVEPLRDFAKDSIRFVKRCTKPDRKEFTKIAKATAIGFVIMGFIGF 52 (67)
T ss_pred chHHHhcchHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777888888888888877766655554555555566665555544
No 90
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.36 E-value=1e+02 Score=26.78 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=13.8
Q ss_pred HHHHhhHHHHHHHHHHHHHH
Q 023623 208 LVDAQGDMLDNIESQVSSAV 227 (279)
Q Consensus 208 LV~~Qge~id~Ie~nv~~a~ 227 (279)
|+.+|.+.+|.|+..|....
T Consensus 146 m~~eQDe~Ld~ls~ti~rlk 165 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQRLK 165 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46778888888777665543
No 91
>PHA03240 envelope glycoprotein M; Provisional
Probab=53.27 E-value=13 Score=31.53 Aligned_cols=13 Identities=54% Similarity=1.193 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHHH
Q 023623 249 KWMCIAIIILLII 261 (279)
Q Consensus 249 k~~~~~i~i~~ii 261 (279)
-|+++++++++||
T Consensus 214 ~WIiilIIiIiII 226 (258)
T PHA03240 214 AWIFIAIIIIIVI 226 (258)
T ss_pred hHHHHHHHHHHHH
Confidence 3554444443333
No 92
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=53.17 E-value=35 Score=24.55 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 023623 235 TALQKAK 241 (279)
Q Consensus 235 ~~L~kA~ 241 (279)
.+|.+-.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444444
No 93
>PRK02793 phi X174 lysis protein; Provisional
Probab=52.86 E-value=75 Score=22.04 Aligned_cols=46 Identities=13% Similarity=0.225 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 232 (279)
-|..||..+.-.-++..+|+..|..|...||+....+..-.+.+..
T Consensus 9 Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 9 RLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667777888888888888888999999998888877776665544
No 94
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=52.83 E-value=58 Score=20.72 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 191 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 245 (279)
Q Consensus 191 Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~ 245 (279)
-.+++..|.....+|..|..+=|.+|..=..-++....+++.+...+..|.+.-+
T Consensus 4 ~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 4 RDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888888887777788888888888888887776543
No 95
>PRK00736 hypothetical protein; Provisional
Probab=52.69 E-value=73 Score=21.83 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 232 (279)
|..||..+.-.-+...+|+..|..|...||.....+..-.+.+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888888899999999999988887777666544
No 96
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=52.60 E-value=33 Score=21.50 Aligned_cols=10 Identities=50% Similarity=1.132 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 023623 252 CIAIIILLII 261 (279)
Q Consensus 252 ~~~i~i~~ii 261 (279)
|++++|+++|
T Consensus 36 ~lilicllli 45 (52)
T TIGR01294 36 CLILICLLLI 45 (52)
T ss_pred HHHHHHHHHH
Confidence 4333343333
No 97
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=52.37 E-value=12 Score=36.02 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 216 LDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 216 id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
|++|...+++|.++++++++-|.+
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~ 463 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDS 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555543
No 98
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=52.07 E-value=20 Score=28.49 Aligned_cols=33 Identities=30% Similarity=0.687 Sum_probs=26.6
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHhcc
Q 023623 240 AKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 240 A~~~~~~~rk~~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
...|++..|+|..++.+..++.++++.+-|+||
T Consensus 118 ~~~y~~~~~~~~~~g~~~~~~~~~i~~LMV~KP 150 (150)
T PF10027_consen 118 PPEYKRLFRRWFILGWIAFLLLVVIVVLMVFKP 150 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 457777788898888888887777788888887
No 99
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=51.95 E-value=82 Score=22.18 Aligned_cols=52 Identities=12% Similarity=0.283 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023623 16 QDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFI 69 (279)
Q Consensus 16 ~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i 69 (279)
-.|+.+|..+..++..|+.......... ....++..+++.+...+..+-+.+
T Consensus 7 l~Ir~dIk~vd~KVdaLq~~V~~l~~~~--~~v~~l~~klDa~~~~l~~l~~~V 58 (75)
T PF05531_consen 7 LVIRQDIKAVDDKVDALQTQVDDLESNL--PDVTELNKKLDAQSAQLTTLNTKV 58 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777777766665442211 223457778887766666555543
No 100
>COG4640 Predicted membrane protein [Function unknown]
Probab=51.42 E-value=25 Score=32.74 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccC
Q 023623 250 WMCIAIIILLIIVAIIVVAVIKPWSS 275 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~~i~~~~~~ 275 (279)
.+.|.++++++|++++.+...+.|+|
T Consensus 52 ii~was~a~~lIlii~~~~fgk~fss 77 (465)
T COG4640 52 IIPWASGAFILILIIILFFFGKNFSS 77 (465)
T ss_pred eehhHHHHHHHHHHHHHHHHhhccCC
Confidence 33444444444444444445555554
No 101
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=51.20 E-value=19 Score=29.12 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=10.6
Q ss_pred HHHHHHHHhhccchhHHHH
Q 023623 236 ALQKAKKLQKNSRKWMCIA 254 (279)
Q Consensus 236 ~L~kA~~~~~~~rk~~~~~ 254 (279)
.-....+.||..||++-++
T Consensus 17 ~y~as~~r~k~~~R~i~l~ 35 (161)
T PHA02673 17 NYVASVKRQKAIRRYIKLF 35 (161)
T ss_pred chhhHHHHHHHHHHHHHHH
Confidence 3444566666667765333
No 102
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=50.93 E-value=2.1e+02 Score=26.58 Aligned_cols=54 Identities=17% Similarity=0.222 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 023623 190 DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVD---HVQSGNTALQKAKKL 243 (279)
Q Consensus 190 ~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~---~v~~a~~~L~kA~~~ 243 (279)
.+...+.+....|-++..-...-||.=-+++.-...+.+ ...+-.+.+.+|..|
T Consensus 110 sls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~~~~~~~~~~~i~~al~Y 166 (399)
T PRK10573 110 AFSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQQEAQQQLTKKVKKALRY 166 (399)
T ss_pred cHHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555655543333344443344443333333 333334444444444
No 103
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.92 E-value=59 Score=27.70 Aligned_cols=32 Identities=16% Similarity=0.309 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 023623 221 SQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 252 (279)
Q Consensus 221 ~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~ 252 (279)
..++.|.+-......+|.++.+.-+.+.+..|
T Consensus 163 e~L~rar~rL~~td~~lgkS~kiL~tM~RR~~ 194 (220)
T KOG1666|consen 163 EQLERARERLRETDANLGKSRKILTTMTRRLI 194 (220)
T ss_pred HHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence 34566677777777778777777776644333
No 104
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=50.47 E-value=10 Score=30.31 Aligned_cols=33 Identities=15% Similarity=0.331 Sum_probs=23.1
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHh
Q 023623 238 QKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 238 ~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~~i~ 270 (279)
+.|...++|..|..++++++++.++++|+++|+
T Consensus 123 KEae~kr~K~Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 123 KEAELKRSKVCKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheEEEEEEEE
Confidence 456666778888887777777666666666654
No 105
>PF14992 TMCO5: TMCO5 family
Probab=49.97 E-value=1.9e+02 Score=25.80 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023623 177 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 231 (279)
Q Consensus 177 ~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~ 231 (279)
....+..-.++|.+++....+++++=.|=+.-+..=.+.+.+||...+...-+.+
T Consensus 121 l~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 121 LLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888888888888777777777777888876665554444
No 106
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=49.55 E-value=83 Score=21.59 Aligned_cols=39 Identities=26% Similarity=0.497 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 023623 214 DMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAII 256 (279)
Q Consensus 214 e~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~ 256 (279)
+-++.+|.+.............+|.+= +.+-+|.+-+++
T Consensus 20 ~~i~~lE~~~~~~e~~i~~~~~~l~~I----~~n~kW~~r~ii 58 (71)
T PF10779_consen 20 ERIDKLEKRDAANEKDIKNLNKQLEKI----KSNTKWIWRTII 58 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 344444444444444444444444332 234456554333
No 107
>PRK02119 hypothetical protein; Provisional
Probab=47.86 E-value=93 Score=21.65 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023623 186 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232 (279)
Q Consensus 186 ~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 232 (279)
.-|..||..+.-.-+...+|+..|..|...||.....+..-.+.+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888889999999999888887776665544
No 108
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=47.22 E-value=2.5e+02 Score=26.42 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=18.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 023623 211 AQGDMLDNIESQVSSAVDHVQSGN-TALQKA 240 (279)
Q Consensus 211 ~Qge~id~Ie~nv~~a~~~v~~a~-~~L~kA 240 (279)
+=-+-.-.|.++++.....+.+=. ..+..+
T Consensus 295 qs~eRaRdi~E~~Es~qtRisklE~~~~Qq~ 325 (395)
T PF10267_consen 295 QSYERARDIWEVMESCQTRISKLEQQQQQQV 325 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344456677778888887777666 333344
No 109
>PRK04406 hypothetical protein; Provisional
Probab=47.18 E-value=98 Score=21.70 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 232 (279)
-|..||..+.-.-++..+|+..|..|...||.....+..-.+.+..
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4667778888888888888888999999998888777776655543
No 110
>PRK01844 hypothetical protein; Provisional
Probab=47.06 E-value=30 Score=24.07 Aligned_cols=14 Identities=14% Similarity=0.634 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 023623 250 WMCIAIIILLIIVA 263 (279)
Q Consensus 250 ~~~~~i~i~~ii~~ 263 (279)
|++|+++++.+++.
T Consensus 4 ~~~I~l~I~~li~G 17 (72)
T PRK01844 4 WLGILVGVVALVAG 17 (72)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444433333
No 111
>PHA03164 hypothetical protein; Provisional
Probab=46.92 E-value=23 Score=24.86 Aligned_cols=6 Identities=17% Similarity=0.379 Sum_probs=2.2
Q ss_pred Hhcccc
Q 023623 269 VIKPWS 274 (279)
Q Consensus 269 i~~~~~ 274 (279)
|+--|.
T Consensus 77 vlyvFn 82 (88)
T PHA03164 77 VLYVFN 82 (88)
T ss_pred HHHhee
Confidence 333333
No 112
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=46.29 E-value=1.9e+02 Score=24.73 Aligned_cols=43 Identities=16% Similarity=0.296 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcC
Q 023623 109 KFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETG 156 (279)
Q Consensus 109 ~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~ 156 (279)
-|-.++.+|.++. ..-.-++. .+|.+.+|....+++++.++..
T Consensus 126 ~fP~TL~eF~~l~----~~~l~~L~-~FYellpp~~e~e~~~~~Le~~ 168 (216)
T PF07957_consen 126 LFPKTLKEFKNLD----DVKLIKLA-KFYELLPPLKEQEEFEEFLEGK 168 (216)
T ss_pred cChhhHHHHHhcc----HHHHHHHH-HHHHhcCCcccHHHHHHHHhcc
Confidence 4556677777652 11111122 3566666755677788777653
No 113
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=46.21 E-value=97 Score=21.39 Aligned_cols=38 Identities=26% Similarity=0.403 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccch--hHHHHHHHHHHHH
Q 023623 216 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK--WMCIAIIILLIIV 262 (279)
Q Consensus 216 id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk--~~~~~i~i~~ii~ 262 (279)
+|.||.-|+.+.. ++ +.+.-++..+ -+.++++++++++
T Consensus 21 Ld~iEeKVEf~~~-------E~--~Qr~Gkk~GRDiGIlYG~viGlli~ 60 (70)
T TIGR01149 21 LDEIEEKVEFVNG-------EV--AQRIGKKVGRDIGILYGLVIGLILF 60 (70)
T ss_pred HHHHHHHHHHHHH-------HH--HHHHhHHhhhHHHHHHHHHHHHHHH
Confidence 5666666655432 22 2333333333 3566777666553
No 114
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=46.21 E-value=2.6e+02 Score=26.31 Aligned_cols=34 Identities=24% Similarity=0.524 Sum_probs=28.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 4 GELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHE 37 (279)
Q Consensus 4 ~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~ 37 (279)
+...+..++.++.+++.....+...++.|+....
T Consensus 210 ~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~ 243 (395)
T PF10267_consen 210 QNLGLQKILEELREIKESQSRLEESIEKLKEQYQ 243 (395)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999999999999999987443
No 115
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=46.12 E-value=94 Score=21.22 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023623 218 NIESQVSSAVDHVQSGNTALQKAKKLQKN 246 (279)
Q Consensus 218 ~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~ 246 (279)
.++.-.+...++.++...-|+.|++--+.
T Consensus 3 ~~~~~~e~~~~~lke~~rvl~~arKP~~e 31 (65)
T COG2443 3 QMMDKPEELREFLKEYRRVLKVARKPDWE 31 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 34566677778888888888877765543
No 116
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=45.94 E-value=20 Score=24.31 Aligned_cols=14 Identities=36% Similarity=0.498 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 023623 254 AIIILLIIVAIIVV 267 (279)
Q Consensus 254 ~i~i~~ii~~~i~~ 267 (279)
++-|++-|+++|.+
T Consensus 4 iiSIvLai~lLI~l 17 (66)
T PF07438_consen 4 IISIVLAIALLISL 17 (66)
T ss_pred hHHHHHHHHHHHHH
Confidence 33333333333333
No 117
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=45.45 E-value=55 Score=22.04 Aligned_cols=44 Identities=25% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 023623 224 SSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 224 ~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~ 267 (279)
+...+.+....+=++.|.+--++-....+....++++++.++.+
T Consensus 4 e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG~~i~G~IGf 47 (61)
T TIGR00327 4 EAPVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIGIIIVGIIGY 47 (61)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777788888888777666655555555555555554443
No 118
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=45.37 E-value=1.6e+02 Score=23.73 Aligned_cols=67 Identities=16% Similarity=0.240 Sum_probs=43.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 5 ELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDR 78 (279)
Q Consensus 5 ~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~ 78 (279)
+..+..+-.++.+++..+..+...+..|..-.....+.++ ..++...+..+. .-+..+..+|..|..
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t---~~el~~~i~~l~----~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPT---NEELREEIEELE----EEIEELEEKLEKLRS 137 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHH----HHHHHHHHHHHHHHh
Confidence 4467777788888888888888888888766665444333 233455555554 445555666666654
No 119
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=44.73 E-value=36 Score=29.85 Aligned_cols=50 Identities=12% Similarity=0.237 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 023623 216 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAII 265 (279)
Q Consensus 216 id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i 265 (279)
+++|--.+++=..+++.|.+.|.+-.+...+.++|.+.+...+....+..
T Consensus 92 v~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~~f~~ 141 (250)
T COG2966 92 VNRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAAAFAL 141 (250)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHHHHHH
Confidence 45555566666667888999998877777778888876666555554433
No 120
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=44.60 E-value=2.3e+02 Score=25.21 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 023623 178 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIII 257 (279)
Q Consensus 178 l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i 257 (279)
..+|..=++.|.++..-..||..+..+=+.+|.-=..-|+++-.|+..|.....+|...=+ ..++.+.++.+++++
T Consensus 194 ~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqr----rt~k~~~~~Llil~v 269 (283)
T COG5325 194 DEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQR----RTKKCRFYLLLILLV 269 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHh----hhccchhhHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999999987654 445677777777777
Q ss_pred HHHHHHHHHHH
Q 023623 258 LLIIVAIIVVA 268 (279)
Q Consensus 258 ~~ii~~~i~~~ 268 (279)
+++++++++.+
T Consensus 270 v~lfv~l~~kl 280 (283)
T COG5325 270 VLLFVSLIKKL 280 (283)
T ss_pred HHHHHHHHHHh
Confidence 77777766653
No 121
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.39 E-value=73 Score=28.31 Aligned_cols=36 Identities=17% Similarity=0.297 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 203 LDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 238 (279)
Q Consensus 203 ~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~ 238 (279)
.--..+..+||+.|++||.++.........|.+.|.
T Consensus 96 ~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~ 131 (273)
T KOG3065|consen 96 SRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLT 131 (273)
T ss_pred HHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHH
Confidence 344556778999999999999998888888877775
No 122
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=43.65 E-value=26 Score=24.41 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=11.3
Q ss_pred hccchhHHHHHHHHHHHHHHHH
Q 023623 245 KNSRKWMCIAIIILLIIVAIIV 266 (279)
Q Consensus 245 ~~~rk~~~~~i~i~~ii~~~i~ 266 (279)
++..+|.-+.++++.+++++++
T Consensus 40 ~~~~~~~~~~~~ii~ii~v~ii 61 (72)
T PF12575_consen 40 NKNNKNFNWIILIISIIFVLII 61 (72)
T ss_pred cCCCCcchHHHHHHHHHHHHHH
Confidence 3344555555665555544443
No 123
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=43.54 E-value=39 Score=24.34 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 023623 250 WMCIAIIILLIIVAIIVVAVIKPW 273 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~~i~~~~ 273 (279)
.+-|+++++.|+=+|+|++++.|-
T Consensus 21 llRYGLf~GAIFQliCilAiI~~~ 44 (85)
T PF06783_consen 21 LLRYGLFVGAIFQLICILAIILPI 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHheeeec
Confidence 456888888888888888888874
No 124
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=43.10 E-value=1.5e+02 Score=22.83 Aligned_cols=64 Identities=16% Similarity=0.279 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q 023623 9 ENFFKKVQDIDKEYEKLEKLLKKL-QGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFI---KSKIEELDR 78 (279)
Q Consensus 9 ~~f~~~v~~i~~~i~~i~~~i~~l-~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i---~~~l~~l~~ 78 (279)
..-..+|.++...+..+...+..| .++.. ..+ ..+.+..-...++.++.+.+.+| +..++.|+.
T Consensus 2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s-----~~~-~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 2 ATIIKEISELIQELKKIESDIKAILEKLQS-----TEQ-DQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----S---HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCc-hHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 344556666666666666666666 22221 112 23344444445566667777766 344444443
No 125
>PRK11020 hypothetical protein; Provisional
Probab=42.71 E-value=1.5e+02 Score=22.59 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHH
Q 023623 18 IDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDE 61 (279)
Q Consensus 18 i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~ 61 (279)
++.+|..++..++.++..........++.--.....+++.++.+
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~ 46 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAE 46 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 45667777777777765554443333433223333344433333
No 126
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=42.57 E-value=43 Score=22.24 Aligned_cols=17 Identities=18% Similarity=0.331 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHHHHHH
Q 023623 250 WMCIAIIILLIIVAIIV 266 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~ 266 (279)
|+.+|..++++++++++
T Consensus 6 ~Iy~~~Vi~l~vl~~~~ 22 (58)
T PF13314_consen 6 LIYYILVIILIVLFGAS 22 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334333333333333
No 127
>PHA02819 hypothetical protein; Provisional
Probab=42.04 E-value=29 Score=24.02 Aligned_cols=27 Identities=15% Similarity=0.328 Sum_probs=18.4
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHH
Q 023623 241 KKLQKNSRKWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 241 ~~~~~~~rk~~~~~i~i~~ii~~~i~~ 267 (279)
..+.++++++.-+.+++++++++++++
T Consensus 34 ~s~~~~~~~~~~~~~~ii~l~~~~~~~ 60 (71)
T PHA02819 34 ENYNKKTKKSFLRYYLIIGLVTIVFVI 60 (71)
T ss_pred CCCcccccCChhHHHHHHHHHHHHHHH
Confidence 335556677888888888876665543
No 128
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=41.89 E-value=34 Score=24.39 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=7.2
Q ss_pred cchhHHHHHHHHHHHHHH
Q 023623 247 SRKWMCIAIIILLIIVAI 264 (279)
Q Consensus 247 ~rk~~~~~i~i~~ii~~~ 264 (279)
..|..+++++++.++++.
T Consensus 11 ~~kkFl~~l~~vfiia~~ 28 (85)
T PF10749_consen 11 EGKKFLLALAIVFIIAAT 28 (85)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 334334444444444333
No 129
>PHA02675 ORF104 fusion protein; Provisional
Probab=41.67 E-value=1.3e+02 Score=21.57 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023623 191 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 230 (279)
Q Consensus 191 Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v 230 (279)
||..+..|-+.|..+..=...=++.|+|.|.+.+....++
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556667888887778888999999999988865544
No 130
>PRK00523 hypothetical protein; Provisional
Probab=41.61 E-value=41 Score=23.42 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023623 252 CIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 252 ~~~i~i~~ii~~~i~~~i~ 270 (279)
+++++|+++|+++++..++
T Consensus 3 ~~~l~I~l~i~~li~G~~~ 21 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGII 21 (72)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3456666665555544443
No 131
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=41.61 E-value=3.1e+02 Score=25.96 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 180 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 241 (279)
Q Consensus 180 ~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~ 241 (279)
.+.+-..+|.++++.|.+..+-+..|...+.++.+-|++|+..+-.+.....+-.+.+....
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 34455678888899999999999999999999999999999888888877776666554443
No 132
>PF12669 P12: Virus attachment protein p12 family
Probab=41.37 E-value=24 Score=23.50 Aligned_cols=11 Identities=18% Similarity=0.136 Sum_probs=6.0
Q ss_pred HHHHhccccCC
Q 023623 266 VVAVIKPWSSN 276 (279)
Q Consensus 266 ~~~i~~~~~~~ 276 (279)
+..+++.++++
T Consensus 17 ~r~~~k~~K~G 27 (58)
T PF12669_consen 17 IRKFIKDKKKG 27 (58)
T ss_pred HHHHHHHhhcC
Confidence 35566655554
No 133
>PHA02642 C-type lectin-like protein; Provisional
Probab=39.67 E-value=15 Score=31.40 Aligned_cols=24 Identities=21% Similarity=0.611 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Q 023623 251 MCIAIIILLIIVAIIVVAVIKPWS 274 (279)
Q Consensus 251 ~~~~i~i~~ii~~~i~~~i~~~~~ 274 (279)
+|++++.++|.+.+|.+.|...++
T Consensus 52 ~c~~~i~~l~~~~~~~l~~~~~~~ 75 (216)
T PHA02642 52 CCIITICILITINLVPIIILMAFK 75 (216)
T ss_pred eeeehHHHHHHHHHHHHHHHHHhc
Confidence 344444333333333344444444
No 134
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=39.18 E-value=28 Score=27.76 Aligned_cols=25 Identities=28% Similarity=0.583 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccc
Q 023623 249 KWMCIAIIILLIIVAIIVVAVIKPW 273 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~~~i~~~~ 273 (279)
.+.++--+..+++++++++.|+|||
T Consensus 123 ~~r~~nei~~ll~i~Iv~lvv~KPF 147 (147)
T PF03653_consen 123 FFRIFNEIPTLLLIAIVILVVVKPF 147 (147)
T ss_pred HHHHHhHHHHHHHHHHHHHheeCCC
Confidence 3444544555555556667899997
No 135
>PHA02844 putative transmembrane protein; Provisional
Probab=37.89 E-value=36 Score=23.77 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=15.6
Q ss_pred HhhccchhHHHHHHHHHHHHHHHH
Q 023623 243 LQKNSRKWMCIAIIILLIIVAIIV 266 (279)
Q Consensus 243 ~~~~~rk~~~~~i~i~~ii~~~i~ 266 (279)
+.++++++.-+.++++++++++++
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~ 61 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFA 61 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHH
Confidence 445566778888888776655444
No 136
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=37.72 E-value=55 Score=23.14 Aligned_cols=28 Identities=14% Similarity=0.416 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccccCC
Q 023623 249 KWMCIAIIILLIIVAIIVVAVIKPWSSN 276 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~~~i~~~~~~~ 276 (279)
|..|=+++++++++.++++|+...|-.+
T Consensus 46 R~~WD~~m~~~~~~~~~~iP~~isF~~d 73 (77)
T PF08412_consen 46 RFYWDLIMLILLLYNLIIIPFRISFFSD 73 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheEecC
Confidence 3345556666666666778887777544
No 137
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=37.44 E-value=3.2e+02 Score=24.89 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHH
Q 023623 20 KEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRME 56 (279)
Q Consensus 20 ~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~ 56 (279)
.....++...+++-.-.-..+++++-.+.+++.++|.
T Consensus 263 na~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ 299 (320)
T TIGR01834 263 NALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQ 299 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3333444444444333334455554333333333333
No 138
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=37.37 E-value=38 Score=23.45 Aligned_cols=9 Identities=44% Similarity=0.641 Sum_probs=5.6
Q ss_pred HHHhhccch
Q 023623 241 KKLQKNSRK 249 (279)
Q Consensus 241 ~~~~~~~rk 249 (279)
++|.|++|+
T Consensus 7 k~Y~rrSr~ 15 (72)
T PF13198_consen 7 KEYPRRSRK 15 (72)
T ss_pred HHccchhHH
Confidence 356677775
No 139
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=37.22 E-value=1.4e+02 Score=21.53 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 023623 198 LQQIFLDMAVLVDAQGDMLDN 218 (279)
Q Consensus 198 L~~lF~dla~LV~~Qge~id~ 218 (279)
+...+..+......-|.+-+-
T Consensus 59 ~~~~~~~~~~~~~~g~~~~~~ 79 (124)
T PF00482_consen 59 FPDFVASLIQAGESGGDLSEV 79 (124)
T ss_dssp S-HHHHHHHHHHHHHT-HHHH
T ss_pred CchHHHHHHHHHhhCCcHHHH
Confidence 333333333333333333333
No 140
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=37.18 E-value=1e+02 Score=26.44 Aligned_cols=7 Identities=0% Similarity=-0.177 Sum_probs=3.1
Q ss_pred HHHhccc
Q 023623 267 VAVIKPW 273 (279)
Q Consensus 267 ~~i~~~~ 273 (279)
+..+.|.
T Consensus 59 v~~l~pl 65 (228)
T PRK13872 59 LVWQSAR 65 (228)
T ss_pred HHHhhcc
Confidence 4444453
No 141
>PRK00846 hypothetical protein; Provisional
Probab=37.06 E-value=1.5e+02 Score=20.96 Aligned_cols=48 Identities=8% Similarity=0.053 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 234 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~ 234 (279)
-|..||..+.-.-++..+|+..|..|...||+....+..-.+.+....
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 366777777777888888888889999999998888877776665543
No 142
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=36.37 E-value=39 Score=24.22 Aligned_cols=14 Identities=21% Similarity=0.202 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 023623 250 WMCIAIIILLIIVA 263 (279)
Q Consensus 250 ~~~~~i~i~~ii~~ 263 (279)
-+.|++++.+.+.+
T Consensus 37 sIVI~FWv~LA~FV 50 (90)
T PF15183_consen 37 SIVIAFWVSLAAFV 50 (90)
T ss_pred eeehhHHHHHHHHH
Confidence 34444444443333
No 143
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=36.15 E-value=1.8e+02 Score=22.53 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHH
Q 023623 219 IESQVSSAVDHVQSGNTALQKAKKLQKNSR-KWMCIAIIIL 258 (279)
Q Consensus 219 Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~r-k~~~~~i~i~ 258 (279)
|-.-..-|.+-|..==.-|.+|++.+++.| .|.+.++.++
T Consensus 60 la~elaAAqevV~~LP~alq~aR~~~rr~rRplliagv~~~ 100 (133)
T PF10814_consen 60 LAQELAAAQEVVANLPQALQGARRRRRRRRRPLLIAGVAVA 100 (133)
T ss_pred HhhHHHHHHHHHhhhHHHHHHHHHhccccccchHHHHHHHH
Confidence 333445555556555666778887777654 4655543333
No 144
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=35.92 E-value=94 Score=26.25 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 023623 184 RHDAVRDLERKLLE 197 (279)
Q Consensus 184 R~~eI~~Ie~sI~e 197 (279)
-++++.+++..|.+
T Consensus 106 W~~~i~~~~~~i~~ 119 (204)
T PF00517_consen 106 WEKEISNYTGNIYN 119 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHH
Confidence 44555555544433
No 145
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=35.68 E-value=3.9e+02 Score=25.35 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 180 EIQERHDAVRDLERKLLELQQIFLDMAVLVDA 211 (279)
Q Consensus 180 ~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~ 211 (279)
++-+|.+.+++-|.....+...=.+|+..|++
T Consensus 374 eAIErAEklR~kEle~r~~d~Fq~ELg~FVe~ 405 (426)
T smart00806 374 EAIERAEKLREKELEYRRVDEFEKELGNFVEN 405 (426)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHhcc
Confidence 45578888888888888888888888888865
No 146
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=35.65 E-value=1.8e+02 Score=21.44 Aligned_cols=67 Identities=12% Similarity=0.235 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 175 MDTLAEIQERHDAVR-DLERKLLELQQIFLDMAVLVDAQ-GDMLDNIESQVSSAVDHVQSGNTALQKAK 241 (279)
Q Consensus 175 ~~~l~~i~~R~~eI~-~Ie~sI~eL~~lF~dla~LV~~Q-ge~id~Ie~nv~~a~~~v~~a~~~L~kA~ 241 (279)
...+..+......+. +.+.--.++..-|..|-.++.+. ..+++.|+..-......+..-...+....
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l 88 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQ 88 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666665553 45556677888888888888755 46888888877666655555555544433
No 147
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=35.60 E-value=1.5e+02 Score=20.50 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=9.1
Q ss_pred hHHHHHHHHHHHHHH
Q 023623 250 WMCIAIIILLIIVAI 264 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~ 264 (279)
-+.++++++++++++
T Consensus 48 GIlYG~v~Glii~~~ 62 (70)
T PF04210_consen 48 GILYGLVIGLIIFII 62 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777766665443
No 148
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=35.57 E-value=31 Score=27.43 Aligned_cols=26 Identities=19% Similarity=0.483 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccc
Q 023623 249 KWMCIAIIILLIIVAIIVVAVIKPWS 274 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~~~i~~~~~ 274 (279)
.+.+.--+..+++++++++.|+|||.
T Consensus 117 ~~r~~ne~p~llli~iV~lvV~KPf~ 142 (142)
T TIGR00701 117 FYRIVNEAPTILMVIIVILVVVKPFD 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCCC
Confidence 35555555666666667788999984
No 149
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=35.42 E-value=3.7e+02 Score=24.94 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 023623 7 GLENFFKKVQDIDKEY 22 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i 22 (279)
.-.+|-.+|+.+-..|
T Consensus 192 d~~eWklEvERV~PqL 207 (359)
T PF10498_consen 192 DPAEWKLEVERVLPQL 207 (359)
T ss_pred CHHHHHHHHHHHhhhh
Confidence 4567777777777766
No 150
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=35.12 E-value=1.3e+02 Score=19.59 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023623 193 RKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 246 (279)
Q Consensus 193 ~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~ 246 (279)
..|.+|..-..+|..|..+=|.+|+.=..-++...++|+.+...+.++.+.-++
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~k 57 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555555555555555555554433
No 151
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=34.53 E-value=1.1e+02 Score=30.23 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 186 DAVRDLERKLLELQQIFLDMAVLVD 210 (279)
Q Consensus 186 ~eI~~Ie~sI~eL~~lF~dla~LV~ 210 (279)
.++..++++|..|++=..-|+.+|-
T Consensus 435 ~d~~~~~~~i~~l~~~~~sl~~~v~ 459 (561)
T PF00429_consen 435 EDLQALEDSISALQEQLTSLAEVVL 459 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444444444444443
No 152
>PF10864 DUF2663: Protein of unknown function (DUF2663); InterPro: IPR020210 This entry represents a group of uncharacterised transmembrane proteins.
Probab=34.32 E-value=79 Score=24.76 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=21.0
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHh
Q 023623 238 QKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 238 ~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~~i~ 270 (279)
++..++.++.++|.+..++++.+.++.+..++.
T Consensus 11 ~K~e~l~k~~~~~~~~~l~~~~~~~~y~~~~~~ 43 (130)
T PF10864_consen 11 EKWERLKKQHLFWQWLFLFSLFLFFIYFYIKVI 43 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777666666666555544433
No 153
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=33.98 E-value=30 Score=30.80 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 47 AMKAIKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 47 ~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
.++++++=++.+-.+.-+.-.+..+..+++++.
T Consensus 56 nDpEmK~iid~~n~eaikkyqqT~~~f~e~~e~ 88 (295)
T TIGR01478 56 NDPELKEIIDKLNEEAIKKYQETHDPYEQLQEL 88 (295)
T ss_pred CcHHHHHHHHHHhHHHhhhhhhhcchHHHHHHH
Confidence 344455555544444444444444455555444
No 154
>PF06388 DUF1075: Protein of unknown function (DUF1075); InterPro: IPR009432 This family consists of several eukaryotic proteins of unknown function.
Probab=33.67 E-value=69 Score=25.63 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=16.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 023623 246 NSRKWMCIAIIILLIIVAIIVVAV 269 (279)
Q Consensus 246 ~~rk~~~~~i~i~~ii~~~i~~~i 269 (279)
+.|-..|++.+++.||.+++.+.-
T Consensus 90 k~RIkv~~~Mi~lTiiGc~~mv~s 113 (146)
T PF06388_consen 90 KARIKVCYIMIALTIIGCIAMVIS 113 (146)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 355677888888888877665543
No 155
>PHA03395 p10 fibrous body protein; Provisional
Probab=33.61 E-value=1.9e+02 Score=21.00 Aligned_cols=49 Identities=16% Similarity=0.357 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 023623 17 DIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISR 67 (279)
Q Consensus 17 ~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~ 67 (279)
.|+.+|..+..++..|+........ +-.+..++..+++.+......+..
T Consensus 8 ~Ir~dIkavd~KVdalQ~~V~~l~~--nlpdv~~l~~kLdaq~~~Ltti~t 56 (87)
T PHA03395 8 LIRQDIKAVSDKVDALQAAVDDVRA--NLPDVTEINEKLDAQSASLDTISS 56 (87)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh--cCCcHHHHHHHHHhHHHHHHHHHH
Confidence 4666677777777766655554321 122345677888887666544333
No 156
>PF15106 TMEM156: TMEM156 protein family
Probab=33.52 E-value=37 Score=28.76 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHhcc
Q 023623 253 IAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 253 ~~i~i~~ii~~~i~~~i~~~ 272 (279)
|-+++++|+++.|++.|.+-
T Consensus 178 WYvLVllVfiflii~iI~KI 197 (226)
T PF15106_consen 178 WYVLVLLVFIFLIILIIYKI 197 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555656554
No 157
>PRK15365 type III secretion system chaperone SseA; Provisional
Probab=33.47 E-value=2e+02 Score=21.32 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 13 KKVQDIDKEYEKLEKLLKKLQGAHEES 39 (279)
Q Consensus 13 ~~v~~i~~~i~~i~~~i~~l~~l~~~~ 39 (279)
.+..++...-..+...+.++++.+..+
T Consensus 9 ~~l~DL~~rYs~L~s~lkKfkq~q~~I 35 (107)
T PRK15365 9 SEYRDLEQSYMQLNHCLKKFHQIRAKV 35 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666555555443
No 158
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=33.31 E-value=40 Score=29.44 Aligned_cols=26 Identities=23% Similarity=0.454 Sum_probs=11.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccc
Q 023623 248 RKWMCIAIIILLIIVAIIVVAVIKPW 273 (279)
Q Consensus 248 rk~~~~~i~i~~ii~~~i~~~i~~~~ 273 (279)
|++.++++++.++++++.++..++.|
T Consensus 195 RkR~i~f~llgllfliiaigltvGT~ 220 (256)
T PF09788_consen 195 RKRAIIFFLLGLLFLIIAIGLTVGTW 220 (256)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 44444444444444444334344444
No 159
>PTZ00370 STEVOR; Provisional
Probab=33.17 E-value=31 Score=30.71 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 46 PAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 46 ~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
.+++++++=++.+-.+.-+.-.+..+..+++++.
T Consensus 54 dNDpemK~i~d~~n~eaikkyqqT~~~f~e~~e~ 87 (296)
T PTZ00370 54 HNDPELKEIIDKMNEEAIKKYQQTHDPYEQLKEV 87 (296)
T ss_pred CCcHHHHHHHHHHhHHHhhhhhhhcchHHHHHHH
Confidence 3445555555555444444444555555555544
No 160
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=33.05 E-value=2.2e+02 Score=22.32 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=15.8
Q ss_pred hhcCChhhHHHHHHHHHHHHHHHHHH
Q 023623 40 KSVTKAPAMKAIKKRMEKDVDEVGKI 65 (279)
Q Consensus 40 ~~~~~~~~~~~l~~~i~~l~~~i~~~ 65 (279)
+.+++..+.+.|..+|+.|...+..+
T Consensus 103 LgvPs~~dv~~L~~rId~L~~~v~~l 128 (132)
T PF05597_consen 103 LGVPSRKDVEALSARIDQLTAQVERL 128 (132)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45666566666666666666555544
No 161
>PRK13673 hypothetical protein; Provisional
Probab=32.79 E-value=1.1e+02 Score=23.66 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhccch
Q 023623 233 GNTALQKAKKLQKNSRK 249 (279)
Q Consensus 233 a~~~L~kA~~~~~~~rk 249 (279)
|--|..-+++.+.+...
T Consensus 75 g~mEm~l~r~kk~k~~~ 91 (118)
T PRK13673 75 GLMEMSLAKRKKGKPTG 91 (118)
T ss_pred HHHHHHHHHHHcCCCcc
Confidence 44455555555544433
No 162
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=32.49 E-value=2.6e+02 Score=27.74 Aligned_cols=61 Identities=10% Similarity=0.125 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 15 VQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDREN 80 (279)
Q Consensus 15 v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~ 80 (279)
++..+..|..|..-+......-.+...+ ...--..++.|+.+....+-.|...|+++-.+.
T Consensus 254 A~sFN~Ai~~I~~g~~t~~~Al~KiQ~V-----VN~q~~aL~~L~~qL~nnF~AISssI~dIy~RL 314 (610)
T PF01601_consen 254 ANSFNKAIGNIQLGFTTTASALNKIQDV-----VNQQGQALNQLTSQLSNNFGAISSSIQDIYNRL 314 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555555555444444433333221 111224555666666666666777776665543
No 163
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=32.23 E-value=2.7e+02 Score=22.50 Aligned_cols=17 Identities=18% Similarity=0.390 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023623 180 EIQERHDAVRDLERKLL 196 (279)
Q Consensus 180 ~i~~R~~eI~~Ie~sI~ 196 (279)
-++.|+..|+.+-..++
T Consensus 56 ~lr~Rydrlr~va~rvQ 72 (156)
T PF08372_consen 56 SLRMRYDRLRSVAGRVQ 72 (156)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 47778888877766544
No 164
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=31.59 E-value=59 Score=21.06 Aligned_cols=18 Identities=17% Similarity=0.384 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 023623 249 KWMCIAIIILLIIVAIIV 266 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~ 266 (279)
+||++++++++++-....
T Consensus 2 PwWvY~vi~gI~~S~ym~ 19 (52)
T PF14147_consen 2 PWWVYFVIAGIIFSGYMA 19 (52)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 577777777766655443
No 165
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=30.54 E-value=51 Score=27.99 Aligned_cols=19 Identities=16% Similarity=0.537 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023623 252 CIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 252 ~~~i~i~~ii~~~i~~~i~ 270 (279)
-++||+++|.++|+|..++
T Consensus 129 amLIClIIIAVLfLICT~L 147 (227)
T PF05399_consen 129 AMLICLIIIAVLFLICTLL 147 (227)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=30.46 E-value=48 Score=30.08 Aligned_cols=19 Identities=42% Similarity=0.648 Sum_probs=9.6
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 023623 248 RKWMCIAIIILLIIVAIIV 266 (279)
Q Consensus 248 rk~~~~~i~i~~ii~~~i~ 266 (279)
|.-++|+|-||++++|||.
T Consensus 35 RQh~MiGiGilVLlLLIi~ 53 (327)
T PRK11901 35 RQHMMIGIGILVLLLLIIA 53 (327)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555444443
No 167
>PRK10884 SH3 domain-containing protein; Provisional
Probab=30.45 E-value=3.4e+02 Score=23.00 Aligned_cols=51 Identities=14% Similarity=0.183 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH-HHHHHHHHHHhcc
Q 023623 220 ESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILL-IIVAIIVVAVIKP 272 (279)
Q Consensus 220 e~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~-ii~~~i~~~i~~~ 272 (279)
......+...++....++..-.+. ..++|+.++-.+++ -+++-+|+|-+.|
T Consensus 145 ~~~l~~~~~~~~~l~~~~~~~~~~--~~~~wf~~Gg~v~~~GlllGlilp~l~p 196 (206)
T PRK10884 145 KNQLIVAQKKVDAANLQLDDKQRT--IIMQWFMYGGGVAGIGLLLGLLLPHLIP 196 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHchHHHHHHHHHHHHhccccc
Confidence 334444555555555555432221 12356655544333 3333345555555
No 168
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=30.39 E-value=1.8e+02 Score=27.44 Aligned_cols=12 Identities=42% Similarity=0.805 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHH
Q 023623 191 LERKLLELQQIF 202 (279)
Q Consensus 191 Ie~sI~eL~~lF 202 (279)
++..+.+|.++|
T Consensus 123 v~~~l~~Le~~~ 134 (406)
T PF04906_consen 123 VEQHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHHHh
Confidence 344444555555
No 169
>PF10496 Syntaxin-18_N: SNARE-complex protein Syntaxin-18 N-terminus ; InterPro: IPR019529 This is the conserved N-terminal of Syntaxin-18. Syntaxin-18 is found in the SNARE complex of the endoplasmic reticulum and functions in the trafficking between the ER intermediate compartment and the cis-Golgi vesicle. In particular, the N-terminal region is important for the formation of ER aggregates []. More specifically, syntaxin-18 is involved in endoplasmic reticulum-mediated phagocytosis, presumably by regulating the specific and direct fusion of the ER with the plasma or phagosomal membranes [].
Probab=30.14 E-value=1.1e+02 Score=21.66 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023623 6 LGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEE 38 (279)
Q Consensus 6 ~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~ 38 (279)
..-..|+.++-+|...|..|...+.+++.-+-.
T Consensus 36 ~~~d~F~keA~~i~~~I~~L~~fL~~iR~~YL~ 68 (87)
T PF10496_consen 36 KPKDEFLKEAYRILSHITSLRKFLKSIRKAYLS 68 (87)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355689999999999999999999999987754
No 170
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=29.86 E-value=1.7e+02 Score=19.37 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 193 RKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 241 (279)
Q Consensus 193 ~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~ 241 (279)
+.+.|.-++=.+...-...|++.|.++...+..+..++..+..-|..-.
T Consensus 15 ~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 15 RMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344444444555566788999999999999999999999988886543
No 171
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.83 E-value=39 Score=31.01 Aligned_cols=20 Identities=20% Similarity=0.730 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 023623 249 KWMCIAIIILLIIVAIIVVA 268 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~~~ 268 (279)
.|+.++++++++++.++++|
T Consensus 189 ~~~vl~~~fvl~tlaivLFP 208 (372)
T KOG2927|consen 189 MWQVLGVLFVLVTLAIVLFP 208 (372)
T ss_pred hHHHHHHHHHHHHHHHHhcc
Confidence 44555555444444444443
No 172
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=29.76 E-value=1.5e+02 Score=25.79 Aligned_cols=25 Identities=32% Similarity=0.477 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHH-HHHHHHHHHhccc
Q 023623 249 KWMCIAIIILLI-IVAIIVVAVIKPW 273 (279)
Q Consensus 249 k~~~~~i~i~~i-i~~~i~~~i~~~~ 273 (279)
.|++++++++++ ++.++.++.+.|.
T Consensus 54 ~w~v~a~~~~~ia~~~v~av~~l~pl 79 (250)
T PRK13887 54 TWQVVGILSLLIALAAVGGVIHIGSQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 465544433333 3333334455553
No 173
>PF09371 Tex_N: Tex-like protein N-terminal domain; InterPro: IPR018974 This presumed domain is found at the N terminus of Q45388 from SWISSPROT. This protein defines a novel family of prokaryotic transcriptional accessory factors []. ; PDB: 2OCE_A 3BZK_A 3BZC_A.
Probab=29.52 E-value=3.4e+02 Score=22.73 Aligned_cols=71 Identities=21% Similarity=0.390 Sum_probs=41.8
Q ss_pred HHhhcCChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 023623 151 QLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVD 228 (279)
Q Consensus 151 ~~ie~~~~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~ 228 (279)
.++++|+.-.|....-.+..-+-....+..+++|+..+.+|++.-.++-. .+.+||-+=+.+...+..|..
T Consensus 17 ~Ll~eG~TvPFIARYRKe~TG~Lde~~lR~i~~~~~~~~~L~~Rk~~il~-------~i~eqgkLt~eL~~~I~~a~t 87 (193)
T PF09371_consen 17 KLLDEGNTVPFIARYRKEMTGGLDEVQLREIQDRYEYLRELEKRKESILK-------SIEEQGKLTPELKQAIENATT 87 (193)
T ss_dssp HHHHTT--HHHHHHH-HHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTT---HHHHHHHHH--S
T ss_pred HHHhCCCCcchhhhhhhhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHcccCCHHHHHHHHhcCC
Confidence 35688887778776532211011124678889999999999888776655 356788887777777777654
No 174
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=29.49 E-value=4.1e+02 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 023623 224 SSAVDHVQSGNTALQKAKKLQKN 246 (279)
Q Consensus 224 ~~a~~~v~~a~~~L~kA~~~~~~ 246 (279)
.+..++-++-.+..++|.+-+|.
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~ 55 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKA 55 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555566666666665
No 175
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=29.17 E-value=3.6e+02 Score=22.92 Aligned_cols=26 Identities=12% Similarity=0.581 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccc
Q 023623 249 KWMCIAIIILLIIVAIIVVAVIKPWS 274 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~~~i~~~~~ 274 (279)
-|--++++.+=|++++++.+++=||+
T Consensus 152 TwgT~~lmgvNvllFl~~~~~~EPwk 177 (207)
T PF05546_consen 152 TWGTWGLMGVNVLLFLVAQLLVEPWK 177 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 46666666666666666666677986
No 176
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=28.51 E-value=5.2e+02 Score=24.58 Aligned_cols=155 Identities=15% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchh
Q 023623 16 QDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGV 95 (279)
Q Consensus 16 ~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~ 95 (279)
.+++..|..+...+..+....-......+-.-...-+.++......+-..+..++..++.|.++... --
T Consensus 172 ~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~-----------Rg 240 (424)
T PF03915_consen 172 SEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQ-----------RG 240 (424)
T ss_dssp ----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------cC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHHHHHhhhhhHH
Q 023623 96 DRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIM 175 (279)
Q Consensus 96 ~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~l~~~~~~~~~ 175 (279)
.|....++..+...+..+..+-... ..|-..++-....+- +.|++.++++ .+|
T Consensus 241 vRp~~~qle~v~kdi~~a~~~L~~m-----~~~i~~~kp~WkKiW-----E~EL~~V~eE---Qqf-------------- 293 (424)
T PF03915_consen 241 VRPSPKQLETVAKDISRASKELKKM-----KEYIKTEKPIWKKIW-----ESELQKVCEE---QQF-------------- 293 (424)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH-----HHHHHHHHHH---HHH--------------
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhCHHHHHHH-----HHHHHHHHHH---HHH--------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 176 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQG 213 (279)
Q Consensus 176 ~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qg 213 (279)
+..-..-+..|...+..+.+.|.-+...+.+|+
T Consensus 294 -----L~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~ 326 (424)
T PF03915_consen 294 -----LKLQEDLLSDLKEDLKKASETFALVEQCTEEQE 326 (424)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHCT---
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 177
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=28.05 E-value=60 Score=30.23 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcc
Q 023623 251 MCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 251 ~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
++|++++++++++.++...+.|
T Consensus 41 ~~Il~~~~~~~~~g~~ya~~~p 62 (377)
T PRK10381 41 KTIIAITFAFACAGLLISFILP 62 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3333333333333333333443
No 178
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=27.93 E-value=2.2e+02 Score=20.08 Aligned_cols=65 Identities=11% Similarity=0.129 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 6 LGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIK 70 (279)
Q Consensus 6 ~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~ 70 (279)
++-...-..+.++...+..++-...+|....+..-...+......+..+|+.+...+...+.+|.
T Consensus 10 ~p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 10 SPGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667777777777777777766666543333333344555555555555554444443
No 179
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.73 E-value=2e+02 Score=24.28 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhccchhHHHH----
Q 023623 185 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSA------VDHVQSGNTALQKAKKLQKNSRKWMCIA---- 254 (279)
Q Consensus 185 ~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a------~~~v~~a~~~L~kA~~~~~~~rk~~~~~---- 254 (279)
|.++.+|.+-=.++.++ -|-|+++||.=.+.- .+.++.=..+-..-++-.++-|+.+|+.
T Consensus 121 ~p~id~lskvkaqv~ev----------k~vM~eNIekvldRGekiELLVdKTenl~~~s~~fr~q~r~~~r~mw~~n~kl 190 (217)
T KOG0859|consen 121 HPEISKLAKVKAQVTEV----------KGVMMENIEKVLDRGEKIELLVDKTENLRSKSFDFRTQGRKLRRKMWFQNMKL 190 (217)
T ss_pred CcchhHHHHHHHHHHHH----------HHHHHHHHHHHHhccCeEEeeechhhhhhhhhHHHHHHHHHHHHHHHHhccce
Confidence 33466665544444332 677888887544332 2333333333222222233334555543
Q ss_pred HHHHHHHHHHHHHHHhccccCC
Q 023623 255 IIILLIIVAIIVVAVIKPWSSN 276 (279)
Q Consensus 255 i~i~~ii~~~i~~~i~~~~~~~ 276 (279)
-+++++++++++.+|+.+.-++
T Consensus 191 ~~iv~~~~~~~iyiiv~~~CgG 212 (217)
T KOG0859|consen 191 KLIVLGVSISLIYIIVARRCGG 212 (217)
T ss_pred ehhhhhHHHHHHHHHHHHhccC
Confidence 2233333344444455554443
No 180
>PF11087 DUF2881: Protein of unknown function (DUF2881); InterPro: IPR020085 This entry represents the DNA delivery proteins P32 and P34 that are found in the virion membrane. It is responsible for DNA delivery and viral infectivity []. It is also required for DNA injection in the membrane transformation event. In Enterobacteria phage PRD1 virions, which are composed of a tail-less icosahedral capsid, an inner protein-lipid membrane, and a dsDNA genome which is located inside the lipid vesicle; the DNA is packaged into a preformed procapsid. The internal membrane plays an active role in DNA delivery to the host cell by forming a tubular structure used for injecting the DNA into the host cytoplasm.
Probab=27.41 E-value=81 Score=19.99 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHhccccCCC
Q 023623 256 IILLIIVAIIVVAVIKPWSSNK 277 (279)
Q Consensus 256 ~i~~ii~~~i~~~i~~~~~~~~ 277 (279)
-++.-|+-+.+++|+.+.+||.
T Consensus 10 ti~taiigvai~av~vs~~snt 31 (54)
T PF11087_consen 10 TIVTAIIGVAIIAVIVSQNSNT 31 (54)
T ss_pred HHHHHHHHHHHHhheeeccCCc
Confidence 3444455555667777776663
No 181
>PHA03164 hypothetical protein; Provisional
Probab=26.95 E-value=1.5e+02 Score=20.93 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 023623 253 IAIIILLIIVAIIVVAVIKPWS 274 (279)
Q Consensus 253 ~~i~i~~ii~~~i~~~i~~~~~ 274 (279)
-|++|.+|..+++++.|+-..+
T Consensus 64 tgLaIamILfiifvlyvFnVnr 85 (88)
T PHA03164 64 TGLAIAMILFIIFVLYVFNVNR 85 (88)
T ss_pred HHHHHHHHHHHHHHHHheeecc
Confidence 3444444445556677765444
No 182
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=26.71 E-value=1.4e+02 Score=21.30 Aligned_cols=29 Identities=14% Similarity=0.416 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 181 IQERHDAVRDLERKLLELQQIFLDMAVLV 209 (279)
Q Consensus 181 i~~R~~eI~~Ie~sI~eL~~lF~dla~LV 209 (279)
++++..+|..++..+.-..++..++..+|
T Consensus 54 ~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 54 VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56677788888888888888888776665
No 183
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=26.56 E-value=2.8e+02 Score=21.31 Aligned_cols=49 Identities=14% Similarity=0.240 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc--CChhhHHHHHHHH
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSV--TKAPAMKAIKKRM 55 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~--~~~~~~~~l~~~i 55 (279)
....|+..+.++-....+.++.+.+|++........ ....+++.++-+|
T Consensus 71 v~~~y~~~~~evL~sv~KtEeSL~rlkk~~~~~~~~~~~~~sD~dKIr~QL 121 (125)
T PF12022_consen 71 VTERYYEIASEVLTSVRKTEESLKRLKKRRKRTSGSSSGGMSDDDKIRLQL 121 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCcHHHHHHHH
Confidence 455788888888888888888888888776533221 2333444454443
No 184
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=26.47 E-value=1e+02 Score=25.33 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 023623 217 DNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIIL 258 (279)
Q Consensus 217 d~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~ 258 (279)
+++-..+..-.-..+.|.++|++-.+......+|..++...+
T Consensus 71 ~~l~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l~~~l 112 (193)
T PF06738_consen 71 NRLSRRIVAGQLSLEEAIERLDEIDREPPRYPPWLVILAAGL 112 (193)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Confidence 333334444444577788888877766655666654443333
No 185
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=26.11 E-value=7.3e+02 Score=25.98 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q 023623 198 LQQIFLDMAVLVDAQGDMLDN 218 (279)
Q Consensus 198 L~~lF~dla~LV~~Qge~id~ 218 (279)
..+...+|+.|.-+|..+.|.
T Consensus 621 ~~q~m~~L~e~lr~QQ~L~D~ 641 (851)
T TIGR02302 621 MEQQMNKLGELMRKQQQLRDE 641 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355566666667777777765
No 186
>PTZ00464 SNF-7-like protein; Provisional
Probab=26.05 E-value=2.8e+02 Score=23.57 Aligned_cols=16 Identities=6% Similarity=0.019 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 023623 11 FFKKVQDIDKEYEKLE 26 (279)
Q Consensus 11 f~~~v~~i~~~i~~i~ 26 (279)
++..++.+...|....
T Consensus 83 q~~nleq~~~~ie~a~ 98 (211)
T PTZ00464 83 QQFNMDQLQFTTESVK 98 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 187
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class xa (Srxa), from the Str superfamily [].
Probab=25.92 E-value=73 Score=25.72 Aligned_cols=26 Identities=12% Similarity=0.185 Sum_probs=15.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhcc
Q 023623 247 SRKWMCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 247 ~rk~~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
.+|.+++|.++.++..+.+++|.+.+
T Consensus 85 ~~kl~~YC~~i~i~~~i~LlIPy~S~ 110 (153)
T PF03383_consen 85 DKKLWIYCGIIAILSFISLLIPYFSD 110 (153)
T ss_pred cchhHHHHHHHHHHHHHHHHhhcCCC
Confidence 35666666666666556666665543
No 188
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=25.86 E-value=1e+02 Score=19.93 Aligned_cols=22 Identities=27% Similarity=0.279 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhcccc
Q 023623 253 IAIIILLIIVAIIVVAVIKPWS 274 (279)
Q Consensus 253 ~~i~i~~ii~~~i~~~i~~~~~ 274 (279)
+.|.+.++++++.+++.+-..+
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk 27 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLK 27 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444433333333333
No 189
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.64 E-value=75 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=9.0
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023623 250 WMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~ 267 (279)
|.+++++++++++++..+
T Consensus 8 ~iii~li~i~li~~~~~~ 25 (85)
T PF11337_consen 8 LIIIILIVISLIIGIYYF 25 (85)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445556665544444433
No 190
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.57 E-value=1.2e+02 Score=19.93 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=11.1
Q ss_pred ccchhHHHHHHHHHHHHHHH
Q 023623 246 NSRKWMCIAIIILLIIVAII 265 (279)
Q Consensus 246 ~~rk~~~~~i~i~~ii~~~i 265 (279)
-.|.|..+++++++++.+-.
T Consensus 27 PFrP~~Ll~~li~Vv~gl~l 46 (55)
T PF11293_consen 27 PFRPWRLLIVLIVVVIGLGL 46 (55)
T ss_pred CcchHHHHHHHHHHHHHHHH
Confidence 44667766555555554433
No 191
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=25.51 E-value=1e+02 Score=19.39 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 023623 254 AIIILLIIVAIIVV 267 (279)
Q Consensus 254 ~i~i~~ii~~~i~~ 267 (279)
.+.+.++++++.++
T Consensus 6 lip~sl~l~~~~l~ 19 (45)
T PF03597_consen 6 LIPVSLILGLIALA 19 (45)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444333333
No 192
>smart00150 SPEC Spectrin repeats.
Probab=25.30 E-value=2.3e+02 Score=19.48 Aligned_cols=31 Identities=26% Similarity=0.396 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023623 8 LENFFKKVQDIDKEYEKLEKLLKKLQGAHEE 38 (279)
Q Consensus 8 ~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~ 38 (279)
++..+...+.+...|......+..+..+-..
T Consensus 33 ~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~ 63 (101)
T smart00150 33 VEALLKKHEALEAELEAHEERVEALNELGEQ 63 (101)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444445555555555555555444433
No 193
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=24.98 E-value=1.9e+02 Score=18.46 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 243 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~ 243 (279)
+.+-...+..|...-.++..|..+=|.+|+.=...+.....++..+...+..|.+.
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~ 62 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKR 62 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 44445556666666666666666656666655556666666666666666666544
No 194
>PF07850 Renin_r: Renin receptor-like protein; InterPro: IPR012493 The sequences featured in this family are similar to a region of the human renin receptor (Q8NG15 from SWISSPROT) that bears a putative transmembrane spanning segment []. The renin receptor is involved in intracellular signal transduction by the activation of the ERK1/ERK2 pathway, and it also serves to increase the efficiency of angiotensinogen cleavage by receptor-bound renin, therefore facilitating angiotensin II generation and action on a cell surface []. ; GO: 0004872 receptor activity, 0016021 integral to membrane; PDB: 3LC8_A 3LBS_A.
Probab=24.90 E-value=26 Score=26.06 Aligned_cols=26 Identities=12% Similarity=0.401 Sum_probs=0.6
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCC
Q 023623 253 IAIIILLIIVAIIVVAVIKPWSSNKG 278 (279)
Q Consensus 253 ~~i~i~~ii~~~i~~~i~~~~~~~~~ 278 (279)
|++++++++++.+++.++.-|.-.||
T Consensus 57 IiLW~~v~l~~all~i~~~m~~mDPG 82 (98)
T PF07850_consen 57 IILWFSVVLALALLAICYAMWNMDPG 82 (98)
T ss_dssp -------------------------T
T ss_pred HHHHHHHHHHHHHHHHHHHheecCCC
Confidence 44444444445454545555666665
No 195
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=24.80 E-value=6.8e+02 Score=24.64 Aligned_cols=73 Identities=15% Similarity=0.166 Sum_probs=48.7
Q ss_pred CChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 3 SGELGLENFFKKVQD-IDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 3 ~~~~~~~~f~~~v~~-i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
++...+..|-+.-++ +...+..|...+............ ......-..++++.+.+...+..+...|..|...
T Consensus 61 es~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f----~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~ 134 (569)
T PRK04778 61 QSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRF----RKAKHEINEIESLLDLIEEDIEQILEELQELLES 134 (569)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788777777 677788888888888887765422 2223333566666667777777777777766554
No 196
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=24.78 E-value=5.9e+02 Score=23.93 Aligned_cols=43 Identities=21% Similarity=0.346 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023623 190 DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 232 (279)
Q Consensus 190 ~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~ 232 (279)
.+-..+...-..|-++-.....-||.-=+++.-.+...+|.++
T Consensus 109 sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~ 151 (397)
T COG1459 109 SLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEK 151 (397)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555556666666666666655555555555555443
No 197
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=24.45 E-value=3e+02 Score=20.47 Aligned_cols=40 Identities=5% Similarity=0.233 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHH
Q 023623 16 QDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKD 58 (279)
Q Consensus 16 ~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l 58 (279)
+.+...+......+..++.-. .+.|+..+...++-.|..+
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l---~~LPt~~dv~~L~l~l~el 77 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKL---EHLPTRDDVHDLQLELAEL 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHH
Confidence 334444444444444444433 3455555444444444433
No 198
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=24.14 E-value=71 Score=30.94 Aligned_cols=24 Identities=13% Similarity=0.247 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 023623 250 WMCIAIIILLIIVAIIVVAVIKPW 273 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i~~~i~~~~ 273 (279)
..|++++++.+++|||+.||+--+
T Consensus 45 lg~LilL~lGLL~LFigyPIlt~~ 68 (504)
T PF03935_consen 45 LGGLILLILGLLMLFIGYPILTFF 68 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhheeEE
Confidence 457777777788888888887643
No 199
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=24.10 E-value=74 Score=28.56 Aligned_cols=16 Identities=19% Similarity=0.351 Sum_probs=7.0
Q ss_pred HHHHHHHhccccCCCC
Q 023623 263 AIIVVAVIKPWSSNKG 278 (279)
Q Consensus 263 ~~i~~~i~~~~~~~~~ 278 (279)
++++..+++-.++..|
T Consensus 287 ivLiaYli~Rrr~~~g 302 (306)
T PF01299_consen 287 IVLIAYLIGRRRSRAG 302 (306)
T ss_pred HHHHhheeEecccccc
Confidence 3333444444444443
No 200
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.10 E-value=3.1e+02 Score=20.45 Aligned_cols=39 Identities=21% Similarity=0.390 Sum_probs=26.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 023623 182 QERHDAVRDL----ERKLLELQQIFLDMAVLVDAQGDMLDNIESQVS 224 (279)
Q Consensus 182 ~~R~~eI~~I----e~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~ 224 (279)
..|+.+++.| ..+..+|+.=|..|+-|..+ ||-|++.+.
T Consensus 64 aakY~DMk~iAEkla~k~deLn~KfenL~P~lqQ----IDaiddst~ 106 (120)
T KOG4559|consen 64 AAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQ----IDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH----HHHHhhHHH
Confidence 3566666554 46788999999999988743 555555443
No 201
>PF06694 Plant_NMP1: Plant nuclear matrix protein 1 (NMP1); InterPro: IPR010604 This family consists of several plant specific nuclear matrix protein 1 (NMP1) sequences. Nuclear Matrix Protein 1 is a ubiquitously expressed 36 kDa protein, which has no homologues in animals and fungi, but is highly conserved among flowering and non-flowering plants. NMP1 is located both in the cytoplasm and nucleus and that the nuclear fraction is associated with the nuclear matrix. NMP1 is a candidate for a plant-specific structural protein with a function both in the nucleus and cytoplasm [].
Probab=23.91 E-value=4.4e+02 Score=23.87 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=31.4
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 3 SGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHE 37 (279)
Q Consensus 3 ~~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~ 37 (279)
.|.|.+.++...+++....+..+++.+.+|...+.
T Consensus 165 ~~lPD~seLe~~~s~~sk~Lq~lqq~v~~Lask~~ 199 (325)
T PF06694_consen 165 YPLPDVSELEKKASELSKQLQSLQQQVAELASKHP 199 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46788999999999999999999999999988875
No 202
>PF15205 PLAC9: Placenta-specific protein 9
Probab=23.85 E-value=2.3e+02 Score=19.52 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 215 MLDNIESQVSSAVDHVQSGNTALQKAK 241 (279)
Q Consensus 215 ~id~Ie~nv~~a~~~v~~a~~~L~kA~ 241 (279)
-+|-||.-|++++++.+.-.+-|....
T Consensus 26 RLdviEe~veKTVEhLeaEvk~LLg~l 52 (74)
T PF15205_consen 26 RLDVIEETVEKTVEHLEAEVKGLLGLL 52 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888888888888887776665443
No 203
>PF07457 DUF1516: Protein of unknown function (DUF1516); InterPro: IPR010899 This family contains a number of hypothetical bacterial proteins of unknown function approximately 120 residues long.
Probab=23.84 E-value=1.4e+02 Score=22.56 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHH
Q 023623 233 GNTALQKAKKLQKNSRKWMCIAIIILLI 260 (279)
Q Consensus 233 a~~~L~kA~~~~~~~rk~~~~~i~i~~i 260 (279)
|--|..=|++.+.+..+..++.++++++
T Consensus 77 ~lmEm~l~rkkk~k~~~~~~~~~ii~~v 104 (110)
T PF07457_consen 77 GLMEMALARKKKGKPTKILWWLFIILLV 104 (110)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 4556666666666655544444443333
No 204
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=23.34 E-value=98 Score=23.51 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=13.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 023623 247 SRKWMCIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 247 ~rk~~~~~i~i~~ii~~~i~~~i~ 270 (279)
+|...+++++++++|-++++.+|+
T Consensus 59 ~~~lffvglii~LivSLaLVsFvI 82 (128)
T PF15145_consen 59 SRSLFFVGLIIVLIVSLALVSFVI 82 (128)
T ss_pred ceeehHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666555554443
No 205
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=23.21 E-value=4.3e+02 Score=23.68 Aligned_cols=9 Identities=0% Similarity=0.209 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 023623 10 NFFKKVQDI 18 (279)
Q Consensus 10 ~f~~~v~~i 18 (279)
-|.+.+++.
T Consensus 219 ~Wi~~ae~~ 227 (293)
T PF09712_consen 219 IWIDAAEEA 227 (293)
T ss_pred HHHHHHHHH
Confidence 344444443
No 206
>PF08764 Coagulase: Staphylococcus aureus coagulase; InterPro: IPR014874 Staphylococcus aureus secretes a cofactor called coagulase. Coagulase is an extracellular protein that forms a complex with human prothrombin, and activates it without the usual proteolytic cleavages []. The resulting complex directly initiates blood clotting. ; PDB: 1NU7_H 1NU9_C 2A1D_D.
Probab=22.62 E-value=5.6e+02 Score=22.91 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=44.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHH
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRF 68 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~ 68 (279)
.+.+|....+.+......+...|..|+..|...... +.........+|..|.++|..+...
T Consensus 112 T~~rYn~I~~sLK~a~eeF~kEVk~Iq~kn~DLk~F-~~~~e~ka~~ei~~LeneIlmLg~a 172 (282)
T PF08764_consen 112 TMERYNYIYESLKEAKEEFKKEVKKIQSKNSDLKPF-DEEEENKATDEINDLENEILMLGYA 172 (282)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHCSGGGS----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc-cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999886553 3333334456777777776665443
No 207
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=22.59 E-value=4.8e+02 Score=22.14 Aligned_cols=11 Identities=36% Similarity=0.492 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 023623 183 ERHDAVRDLER 193 (279)
Q Consensus 183 ~R~~eI~~Ie~ 193 (279)
++++-+..++.
T Consensus 105 ~~~~~l~~l~~ 115 (207)
T COG5278 105 ELLESLDDLEP 115 (207)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 208
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=22.55 E-value=1.6e+02 Score=21.67 Aligned_cols=14 Identities=29% Similarity=0.480 Sum_probs=7.3
Q ss_pred HHHHHHhhccchhH
Q 023623 238 QKAKKLQKNSRKWM 251 (279)
Q Consensus 238 ~kA~~~~~~~rk~~ 251 (279)
++|..+|+..+...
T Consensus 9 ~~a~~~q~~~~~~~ 22 (112)
T PF14015_consen 9 KKARRAQRRYRRLR 22 (112)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555665555433
No 209
>COG4550 Predicted membrane protein [Function unknown]
Probab=22.09 E-value=3.7e+02 Score=20.58 Aligned_cols=30 Identities=13% Similarity=0.351 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 10 NFFKKVQDIDKEYEKLEKLLKKLQGAHEES 39 (279)
Q Consensus 10 ~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~ 39 (279)
.||..++.-=..-.++...++.|+.+++..
T Consensus 25 ~~fq~aE~qin~n~~v~~~~~~iK~lQKeA 54 (120)
T COG4550 25 KFFQQAEAQINANQKVKTKVDEIKKLQKEA 54 (120)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhh
Confidence 566666666566667777777777777753
No 210
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=21.97 E-value=3.9e+02 Score=20.80 Aligned_cols=28 Identities=14% Similarity=0.238 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023623 11 FFKKVQDIDKEYEKLEKLLKKLQGAHEE 38 (279)
Q Consensus 11 f~~~v~~i~~~i~~i~~~i~~l~~l~~~ 38 (279)
+-+.|..+...|..+.+.+..-++.-..
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsq 68 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQ 68 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777666554443
No 211
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=21.93 E-value=1.2e+02 Score=17.04 Aligned_cols=17 Identities=18% Similarity=0.608 Sum_probs=10.9
Q ss_pred ChhhHHHHHHHHHHHHH
Q 023623 4 GELGLENFFKKVQDIDK 20 (279)
Q Consensus 4 ~~~~~~~f~~~v~~i~~ 20 (279)
+.+.+.+|++...+|+.
T Consensus 5 ~~d~f~eFY~rlk~Ike 21 (28)
T PF12108_consen 5 GGDPFSEFYERLKEIKE 21 (28)
T ss_dssp S--HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHH
Confidence 45677888887777664
No 212
>PRK06654 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=21.84 E-value=1e+02 Score=25.66 Aligned_cols=11 Identities=36% Similarity=0.187 Sum_probs=5.7
Q ss_pred HHhccccCCCC
Q 023623 268 AVIKPWSSNKG 278 (279)
Q Consensus 268 ~i~~~~~~~~~ 278 (279)
+|-+...+.+|
T Consensus 53 ~~~~~~~~~~g 63 (181)
T PRK06654 53 FVSKMVVSQSG 63 (181)
T ss_pred hhhhhhhcccC
Confidence 45555555554
No 213
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=21.72 E-value=1.5e+02 Score=18.39 Aligned_cols=16 Identities=19% Similarity=0.517 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 023623 250 WMCIAIIILLIIVAII 265 (279)
Q Consensus 250 ~~~~~i~i~~ii~~~i 265 (279)
|.++++.+++++++++
T Consensus 8 W~sYg~t~~~l~~l~~ 23 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIV 23 (46)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667666666665543
No 214
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=21.61 E-value=4.9e+02 Score=24.08 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023623 189 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 230 (279)
Q Consensus 189 ~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v 230 (279)
..+..++.+-. .|-.+..-...-||.=-+.+.-.+...++-
T Consensus 313 ~sls~al~~~~-~fp~~~~~~i~~GE~sG~L~~~L~~la~~~ 353 (399)
T PRK10573 313 IPLWLALKNHP-LFPPLCLQLVRVGEESGSLDLMLENLAHWH 353 (399)
T ss_pred ccHHHHHhhCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 34555555544 666665555556665555555555444443
No 215
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=21.58 E-value=4.4e+02 Score=21.27 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 177 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDM-LDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 177 ~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~-id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
...+++.=.+.|+.|......|.+=|.-+...-.++.+. ++-++.+|..-..-++.+.+.+.-
T Consensus 77 ~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 77 IKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 334444444445555555556666666666667777777 899999998888777777666553
No 216
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=21.56 E-value=4.3e+02 Score=22.33 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 023623 158 SEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQ 222 (279)
Q Consensus 158 ~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~n 222 (279)
++.++.. +.+.++..+..+|.+-+.=|.+|..++..|..|.+--.+|..|+..=..|.+-|+.=
T Consensus 105 se~YWk~-lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~l 168 (200)
T PF07412_consen 105 SENYWKE-LAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIERL 168 (200)
T ss_dssp CHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455553 334444444456666555555665555555555554444444444444444444433
No 217
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=21.43 E-value=5.4e+02 Score=22.24 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHHH
Q 023623 190 DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR-KWMCIAIIILLIIVAIIVV 267 (279)
Q Consensus 190 ~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~r-k~~~~~i~i~~ii~~~i~~ 267 (279)
+|-.++.-|..-|+..+.-- |..|+.=-.-+..+.--++....-|..+...-.+.- ++..+++.+.+||++++.+
T Consensus 155 eLaesll~LArslKtnalAf---qsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sF 230 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNALAF---QSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSF 230 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHH---HHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 55666666666666554332 233332222333444444444455555544444443 3434444444444443333
No 218
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=21.20 E-value=6.6e+02 Score=23.18 Aligned_cols=120 Identities=19% Similarity=0.258 Sum_probs=0.0
Q ss_pred HHHHHHhhcC-ChhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023623 147 ETIDQLIETG-DSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 225 (279)
Q Consensus 147 eei~~~ie~~-~~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 225 (279)
..+..++.+| ....-+..+.........+..+..+.++=++=..+..++.+-. +|-++..-...-||.=.+.+.-...
T Consensus 271 ~~Ls~Ll~sGi~l~~aL~~~~~~~~n~~l~~~l~~i~~~l~~G~sls~al~~~~-~fp~~~~~mi~~GE~sG~L~~~L~~ 349 (399)
T TIGR02120 271 RTLSILLSSGVPLLRALQIARETLTNRALRAAVEDAAARVREGGSLSRALRATG-LFPPLLVHMIASGEKSGQLETMLER 349 (399)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHhCCHHHHHHHHHHHHHHHCCccHHHHHhcCC-CCCHHHHHHHHHHhhhccHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhcc
Q 023623 226 AVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKP 272 (279)
Q Consensus 226 a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~~i~~~ 272 (279)
+.++.+. +--.+.++...-.-=++++++.++++++++.++.|
T Consensus 350 ~a~~~~~-----~~~~~~~~~~~lieP~~il~ig~~v~~i~~~~~lP 391 (399)
T TIGR02120 350 AADNQER-----EFERRIATLTALLEPLLIVVMGGVVLFIVLAVLLP 391 (399)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 219
>PF10999 DUF2839: Protein of unknown function (DUF2839); InterPro: IPR021262 This bacterial family of unknown function appear to be restricted to Cyanobacteria.
Probab=21.04 E-value=1.1e+02 Score=21.08 Aligned_cols=20 Identities=25% Similarity=0.657 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 023623 249 KWMCIAIIILLIIVAIIVVA 268 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~i~~~ 268 (279)
.|++|++++++-|++-++.|
T Consensus 44 ~w~gig~l~~~wi~vrfiGp 63 (68)
T PF10999_consen 44 PWIGIGILVLIWIIVRFIGP 63 (68)
T ss_pred cchhHHHHHHHHHHHHhhcc
Confidence 46666555555444444333
No 220
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.04 E-value=2.9e+02 Score=18.94 Aligned_cols=29 Identities=28% Similarity=0.528 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 182 QERHDAVRDLERKLLELQQIFLDMAVLVD 210 (279)
Q Consensus 182 ~~R~~eI~~Ie~sI~eL~~lF~dla~LV~ 210 (279)
.+|+..|..++..+.|..++..+|..-|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999977663
No 221
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.97 E-value=1.6e+02 Score=27.56 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=11.8
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 023623 248 RKWMCIAIIILLIIVAIIV 266 (279)
Q Consensus 248 rk~~~~~i~i~~ii~~~i~ 266 (279)
.||.-+|+++++|.+++-+
T Consensus 220 fk~~giGliillvl~li~~ 238 (434)
T COG4499 220 FKYFGIGLIILLVLLLIYF 238 (434)
T ss_pred hhhHHHhHHHHHHHHHHHH
Confidence 3677776666666655544
No 222
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=20.93 E-value=1.9e+02 Score=20.62 Aligned_cols=19 Identities=11% Similarity=0.226 Sum_probs=8.1
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 023623 212 QGDMLDNIESQVSSAVDHV 230 (279)
Q Consensus 212 Qge~id~Ie~nv~~a~~~v 230 (279)
|+-..|..-+.........
T Consensus 23 ~~GfFd~~~ygfrr~~~~~ 41 (92)
T PF13038_consen 23 QSGFFDGFSYGFRRLFRQI 41 (92)
T ss_pred hcCchHHHHHHHHHHHHHh
Confidence 3444444444444444333
No 223
>COG3162 Predicted membrane protein [Function unknown]
Probab=20.91 E-value=2e+02 Score=21.41 Aligned_cols=35 Identities=11% Similarity=0.198 Sum_probs=15.8
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHhccccCCC
Q 023623 243 LQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSNK 277 (279)
Q Consensus 243 ~~~~~rk~~~~~i~i~~ii~~~i~~~i~~~~~~~~ 277 (279)
.||++.-|..-+++.++=+.+++++..-.+|=++|
T Consensus 20 ~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp 54 (102)
T COG3162 20 RKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATP 54 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCc
Confidence 34333345544444444444444444333455443
No 224
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.83 E-value=3.7e+02 Score=20.12 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVD 228 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~ 228 (279)
.|..+.+.+.-..+=...+..=+..||++|+.|..-......
T Consensus 54 qI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~ink 95 (102)
T PF01519_consen 54 QINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINK 95 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444455788888888776655443
No 225
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=20.81 E-value=6.9e+02 Score=23.27 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 5 ELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKK---RMEKDVDEVGKISRFIKSKIEELDREN 80 (279)
Q Consensus 5 ~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~---~i~~l~~~i~~~~~~i~~~l~~l~~~~ 80 (279)
+..+...=..+..++..+..+...+...-.-+..... ..+...+..+. ++-..+.+|+..+......+..|-++.
T Consensus 17 e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~-~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dI 94 (383)
T PF04100_consen 17 EQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQ-DAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDI 94 (383)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555677777777777777766555542211 11122233333 333334555566666666666665543
No 226
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=20.42 E-value=1.2e+02 Score=25.97 Aligned_cols=22 Identities=18% Similarity=0.428 Sum_probs=14.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 023623 248 RKWMCIAIIILLIIVAIIVVAV 269 (279)
Q Consensus 248 rk~~~~~i~i~~ii~~~i~~~i 269 (279)
|+.+|++|+.+++.+..+++.+
T Consensus 208 ~Ra~~ffilal~~avta~~lt~ 229 (275)
T KOG4684|consen 208 RRALLFFILALTVAVTAVILTM 229 (275)
T ss_pred hhhHHHHHHHHHHHHHHHHHHh
Confidence 4667777777766666665543
No 227
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=20.37 E-value=76 Score=29.91 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=12.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHh
Q 023623 247 SRKWMCIAIIILLIIVAIIVVAVI 270 (279)
Q Consensus 247 ~rk~~~~~i~i~~ii~~~i~~~i~ 270 (279)
.|+.+.+|.++++||++++++.+.
T Consensus 28 ~~~riiiGa~Vl~iIii~~~~~~Y 51 (416)
T PF04415_consen 28 RRKRIIIGAAVLIIIIIFIVYNIY 51 (416)
T ss_pred hhhhhhhhhhhHhHHHHHHHHHHH
Confidence 344555555555555555555444
No 228
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=20.28 E-value=2.8e+02 Score=18.53 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=20.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 44 KAPAMKAIKKRMEKDVDEVGKISRFIKSKIEEL 76 (279)
Q Consensus 44 ~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l 76 (279)
+|......-..+.....++......++..+..|
T Consensus 5 d~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l 37 (86)
T PF06013_consen 5 DPEQLRAAAQQLQAQADELQSQLQQLESSIDSL 37 (86)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555666666666666666666666666
No 229
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.22 E-value=1.3e+02 Score=26.03 Aligned_cols=6 Identities=33% Similarity=1.332 Sum_probs=3.6
Q ss_pred ccCCCC
Q 023623 273 WSSNKG 278 (279)
Q Consensus 273 ~~~~~~ 278 (279)
|+..||
T Consensus 215 ~k~dPg 220 (259)
T PF07010_consen 215 WKTDPG 220 (259)
T ss_pred hcCCCC
Confidence 666655
No 230
>COG5613 Uncharacterized conserved protein [Function unknown]
Probab=20.20 E-value=7e+02 Score=23.12 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 023623 216 LDNIESQVSSAVDHVQSGNTALQKAKKLQKN 246 (279)
Q Consensus 216 id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~ 246 (279)
+..|+...++-..+++.+...++++..-+++
T Consensus 135 l~~ne~~m~qn~kkme~nqqkikk~eeeak~ 165 (400)
T COG5613 135 LNSNEIYMDQNTKKMENNQQKIKKQEEEAKK 165 (400)
T ss_pred hcccHHHHHhhHHHHHhhHHHHHHHHHHHHH
Confidence 4455555555555566665555555554443
No 231
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=20.18 E-value=2.2e+02 Score=18.31 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHH
Q 023623 249 KWMCIAIIILLIIVAI 264 (279)
Q Consensus 249 k~~~~~i~i~~ii~~~ 264 (279)
+|+.+++.+.+|++++
T Consensus 22 ~ww~~~f~~tivfa~~ 37 (51)
T PF14715_consen 22 RWWLWLFYGTIVFAVG 37 (51)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666555555555443
No 232
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=20.15 E-value=4.1e+02 Score=20.39 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 198 LQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 242 (279)
Q Consensus 198 L~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~ 242 (279)
|.++|..|..|++.=..-++.+|...-.|...+-.|-.+|++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 456677776666654444556787777788888888777776543
No 233
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=20.06 E-value=1.4e+02 Score=19.07 Aligned_cols=9 Identities=44% Similarity=1.147 Sum_probs=3.6
Q ss_pred hHHHHHHHH
Q 023623 250 WMCIAIIIL 258 (279)
Q Consensus 250 ~~~~~i~i~ 258 (279)
|.||.++++
T Consensus 5 wywivli~l 13 (54)
T PF13260_consen 5 WYWIVLIVL 13 (54)
T ss_pred HHHHHHHHH
Confidence 444433333
Done!