Query 023623
Match_columns 279
No_of_seqs 155 out of 1318
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 09:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 4.1E-48 1.4E-52 339.9 14.3 243 3-253 25-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 4.3E-42 1.5E-46 304.1 11.2 240 3-248 38-279 (279)
3 1fio_A SSO1 protein; four heli 100.0 1.1E-34 3.7E-39 244.0 21.2 194 6-213 2-196 (196)
4 3hd7_B Syntaxin-1A; membrane p 100.0 4.9E-31 1.7E-35 200.1 14.5 97 173-269 8-104 (109)
5 1jth_B Syntaxin 1A; coiled-coi 99.9 4.7E-27 1.6E-31 167.4 10.0 76 178-253 2-77 (77)
6 3c98_B Syntaxin-1A; protein co 99.9 1.2E-26 4.2E-31 203.8 13.6 243 3-253 37-279 (279)
7 2nps_B Syntaxin 13, vesicle-as 99.9 6.6E-25 2.3E-29 153.7 10.3 70 182-251 2-71 (71)
8 1sfc_B Protein (syntaxin 1A), 99.9 1.6E-24 5.6E-29 156.3 9.2 76 173-248 8-83 (83)
9 3b5n_B Protein SSO1; snare com 99.9 1E-23 3.5E-28 146.7 10.7 68 178-245 2-69 (69)
10 1s94_A S-syntaxin; three helix 99.9 5.7E-24 2E-28 176.2 9.3 147 4-156 34-180 (180)
11 1n7s_B Syntaxin 1A; neuronal s 99.9 2E-22 6.7E-27 139.9 8.7 66 176-241 2-67 (68)
12 1gl2_B Syntaxin 7; membrane pr 99.9 7.7E-22 2.6E-26 135.5 8.4 63 180-242 3-65 (65)
13 1ez3_A Syntaxin-1A; three heli 99.8 2E-19 6.7E-24 140.5 15.2 123 3-130 2-124 (127)
14 2dnx_A Syntaxin-12; snare, HAB 98.9 4.3E-08 1.5E-12 76.1 14.8 114 7-131 8-121 (130)
15 3hd7_B Syntaxin-1A; membrane p 97.5 0.0051 1.7E-07 45.8 14.2 89 177-269 19-107 (109)
16 1hs7_A Syntaxin VAM3; UP-and-D 97.4 0.0021 7E-08 46.7 10.6 85 16-128 6-91 (97)
17 3hd7_A Vesicle-associated memb 97.3 0.011 3.6E-07 42.5 13.0 58 187-247 6-63 (91)
18 2nps_D Syntaxin-6; vesicle fus 96.8 0.0061 2.1E-07 42.9 8.0 65 181-245 14-78 (82)
19 1n7s_D SNAP-25A; neuronal snar 96.8 0.017 5.7E-07 38.8 9.8 55 185-239 9-63 (66)
20 1gl2_D Syntaxin 8, vesicle tra 96.6 0.012 4E-07 39.4 7.5 56 184-239 7-62 (65)
21 1sfc_D Protein (SNAP-25B), pro 96.5 0.03 1E-06 39.7 9.8 56 184-239 27-82 (87)
22 1l4a_D S-SNAP25 fusion protein 95.9 0.04 1.4E-06 39.1 7.7 55 185-239 29-83 (87)
23 3b5n_D Protein transport prote 95.6 0.15 5.1E-06 33.9 9.2 53 186-238 10-62 (64)
24 1nhl_A Synaptosomal-associated 95.3 0.17 5.7E-06 32.4 8.4 42 197-238 11-52 (54)
25 2kog_A Vesicle-associated memb 94.0 0.0061 2.1E-07 46.0 -1.0 39 187-225 34-72 (119)
26 3b5n_C Protein transport prote 93.4 0.87 3E-05 30.7 9.0 36 208-243 34-69 (70)
27 1n7s_C SNAP-25A; neuronal snar 91.5 2.4 8.1E-05 29.2 10.9 49 191-239 28-76 (79)
28 1l4a_C S-SNAP25 fusion protein 88.3 1 3.5E-05 31.4 5.5 33 205-237 46-78 (83)
29 2kog_A Vesicle-associated memb 77.1 2.3 8E-05 31.7 3.8 9 239-247 83-91 (119)
30 3hd7_A Vesicle-associated memb 74.5 19 0.00066 25.2 12.8 17 176-192 23-39 (91)
31 2ww9_B Protein transport prote 70.6 1.9 6.3E-05 29.8 1.6 55 214-268 13-67 (80)
32 4dnd_A Syntaxin-10, SYN10; str 68.1 36 0.0012 25.5 12.6 94 11-112 29-123 (130)
33 2nps_B Syntaxin 13, vesicle-as 67.9 23 0.0008 23.4 8.6 62 180-241 7-68 (71)
34 2lk9_A Bone marrow stromal ant 65.6 7.9 0.00027 21.8 3.2 26 252-277 8-33 (35)
35 1n7s_B Syntaxin 1A; neuronal s 65.6 25 0.00087 22.9 9.8 53 181-233 14-66 (68)
36 3ghg_A Fibrinogen alpha chain; 63.7 95 0.0033 28.9 13.9 51 58-124 104-154 (562)
37 1gl2_C VTI1B, vesicle transpor 61.9 30 0.001 22.5 8.9 42 197-238 20-61 (65)
38 3b5n_B Protein SSO1; snare com 61.8 31 0.0011 22.6 9.7 55 181-235 12-66 (69)
39 3n27_A Fusion glycoprotein F0, 59.1 39 0.0013 23.0 6.4 61 181-243 15-75 (80)
40 1deq_A Fibrinogen (alpha chain 57.7 1E+02 0.0035 27.4 11.5 64 16-79 63-128 (390)
41 3efg_A Protein SLYX homolog; x 56.3 41 0.0014 22.8 6.4 47 187-233 15-61 (78)
42 1gl2_B Syntaxin 7; membrane pr 55.5 39 0.0013 21.8 8.6 54 181-234 11-64 (65)
43 2wvr_A Geminin; DNA replicatio 54.9 83 0.0028 25.4 8.8 72 159-231 96-167 (209)
44 2bez_C E2 glycoprotein; coiled 52.4 51 0.0017 22.2 9.7 65 8-77 11-75 (77)
45 1uii_A Geminin; human, DNA rep 52.3 54 0.0018 22.5 8.7 51 160-211 28-78 (83)
46 1fjk_A Cardiac phospholamban; 50.3 9.1 0.00031 23.1 1.9 8 252-259 36-43 (52)
47 1jth_B Syntaxin 1A; coiled-coi 48.9 57 0.0019 21.7 9.8 64 179-242 10-73 (77)
48 3c98_B Syntaxin-1A; protein co 47.8 7.5 0.00026 32.4 1.9 215 9-243 50-276 (279)
49 3fym_A Putative uncharacterize 46.0 4.3 0.00015 30.4 0.0 12 247-258 102-113 (130)
50 1sfc_B Protein (syntaxin 1A), 45.1 70 0.0024 21.7 9.7 59 178-236 20-78 (83)
51 2lf0_A Uncharacterized protein 41.4 1E+02 0.0035 22.6 6.9 47 18-64 8-54 (123)
52 3ghg_A Fibrinogen alpha chain; 41.3 2.2E+02 0.0077 26.5 12.7 29 51-79 51-79 (562)
53 1rh5_B Preprotein translocase 40.1 7.3 0.00025 26.4 0.4 44 218-261 4-47 (74)
54 2c5k_T Syntaxin TLG1, T-snare 40.1 94 0.0032 21.8 10.0 84 11-117 8-91 (95)
55 1sfc_A VAMP 2, protein (synapt 38.5 1E+02 0.0034 21.6 9.1 40 187-226 31-70 (96)
56 2wwb_B SEC61gamma, protein tra 36.4 3.2 0.00011 27.7 -1.8 48 221-268 6-53 (68)
57 3swy_A Cyclic nucleotide-gated 35.9 73 0.0025 19.3 4.8 25 101-125 12-36 (46)
58 2l5g_B Putative uncharacterize 34.4 73 0.0025 18.8 4.3 28 10-37 6-33 (42)
59 2l16_A SEC-independent protein 31.1 26 0.00089 23.9 2.1 6 267-272 18-23 (78)
60 2ke4_A CDC42-interacting prote 30.9 1.4E+02 0.0048 21.1 6.6 56 9-67 18-76 (98)
61 4dnd_A Syntaxin-10, SYN10; str 30.6 1.4E+02 0.0047 22.2 6.3 19 101-119 74-92 (130)
62 1wlq_A Geminin; coiled-coil; 2 30.6 1.3E+02 0.0045 20.6 8.5 38 174-211 33-70 (83)
63 3s4r_A Vimentin; alpha-helix, 30.1 1.4E+02 0.0048 20.8 9.4 28 7-34 17-44 (93)
64 3gwk_C SAG1039, putative uncha 29.9 1.3E+02 0.0045 20.3 12.2 36 43-78 8-43 (98)
65 2v4h_A NF-kappa-B essential mo 28.9 1.6E+02 0.0056 21.2 6.9 33 7-39 39-71 (110)
66 2nps_A VAMP-4, vesicle-associa 28.1 1.3E+02 0.0045 19.8 6.6 37 189-225 11-47 (74)
67 3swf_A CGMP-gated cation chann 27.9 1.4E+02 0.0047 20.0 5.3 27 100-126 13-39 (74)
68 2l9u_A Receptor tyrosine-prote 27.2 43 0.0015 18.9 2.1 24 252-275 9-32 (40)
69 2beq_A E2 glycoprotein; viral 26.6 98 0.0034 17.9 4.4 30 190-219 3-32 (38)
70 1wyy_A E2 glycoprotein; membra 26.4 2.1E+02 0.0073 21.7 9.8 67 8-79 24-90 (149)
71 1yod_A Water-solublized phosph 26.0 51 0.0017 17.6 2.2 8 252-259 15-22 (30)
72 2xhe_B Syntaxin1; exocytosis, 24.9 2.3E+02 0.008 23.6 7.6 209 18-248 46-272 (279)
73 1l4a_A Synaptobrevin; snare, s 23.8 1.7E+02 0.0057 19.6 6.1 38 188-225 17-54 (80)
74 3uul_A Utrophin; spectrin repe 22.8 1.9E+02 0.0066 19.9 11.7 22 8-29 4-25 (118)
75 1deq_A Fibrinogen (alpha chain 21.8 4.2E+02 0.014 23.5 14.5 29 51-79 54-82 (390)
76 3uun_A Dystrophin; triple heli 21.7 2E+02 0.0069 19.7 11.7 25 7-31 3-27 (119)
77 3um3_B Charged multivesicular 20.6 2.4E+02 0.0081 20.1 6.6 50 12-61 5-54 (104)
78 1urq_A M-tomosyn isoform; tran 20.5 1.8E+02 0.0061 18.6 7.3 38 188-225 6-43 (63)
79 1m1j_A Fibrinogen alpha subuni 20.2 5E+02 0.017 23.7 13.2 66 14-79 59-126 (491)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=4.1e-48 Score=339.91 Aligned_cols=243 Identities=23% Similarity=0.430 Sum_probs=194.8
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 3 SGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT 82 (279)
Q Consensus 3 ~~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~ 82 (279)
+++++|+.||+.|++|+..|..|+.++.+|+++|+.+++.+++ ++.++.+|+.++.+|+++++.|+..|+.|+.....
T Consensus 25 ~~~~~m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~--~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~ 102 (267)
T 1dn1_B 25 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNP--DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 102 (267)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677999999999999999999999999999999987765443 34789999999999999999999999999987542
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHH
Q 023623 83 SRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIF 162 (279)
Q Consensus 83 ~~~~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~ 162 (279)
. +++++++++.|+|++|+..|+++|+++|.+|+.+|..|+..++.++.|+| .+.||++|+++++.++++|++..|.
T Consensus 103 ~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~-~i~~~~~tdeeie~~ie~g~~~~f~ 178 (267)
T 1dn1_B 103 E---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFA 178 (267)
T ss_dssp H---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHTCSSCTTT
T ss_pred c---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hccCCCCCHHHHHHHHhCCcHHHHH
Confidence 1 12234467789999999999999999999999999999999999998865 6778999999999999998876443
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 163 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 242 (279)
Q Consensus 163 q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~ 242 (279)
+..+.. ...++.++.++++||++|.+||++|.|||+||.|||+||++||++||+||+||+.|.+||+.|..+|.+|.+
T Consensus 179 q~~l~~--~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~ 256 (267)
T 1dn1_B 179 SGIIMD--SSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 256 (267)
T ss_dssp TTCCCC--SHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332322 235667899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHH
Q 023623 243 LQKNSRKWMCI 253 (279)
Q Consensus 243 ~~~~~rk~~~~ 253 (279)
|++++|||+||
T Consensus 257 ~q~~~rkk~~~ 267 (267)
T 1dn1_B 257 YQSKARRKKIM 267 (267)
T ss_dssp -----------
T ss_pred HHHHhcCcccC
Confidence 99999999886
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=4.3e-42 Score=304.05 Aligned_cols=240 Identities=24% Similarity=0.427 Sum_probs=178.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 3 SGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT 82 (279)
Q Consensus 3 ~~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~ 82 (279)
+++++|++|++.|++|...|..|+.++.+|..+|++.+..+.+.+...++.+|+.++..|+++++.|+..|+.|+.....
T Consensus 38 ~~~~~~~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~ 117 (279)
T 2xhe_B 38 QPEPFMADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKR 117 (279)
T ss_dssp --CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999876655555555899999999999999999999999999987543
Q ss_pred hccCCCCCCC-ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhH
Q 023623 83 SRQKPGCGKG-TG-VDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQ 160 (279)
Q Consensus 83 ~~~~~~~~~~-~~-~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~ 160 (279)
....++++++ ++ +.|++++++..|+++|+++|.+|+.+|..|...++.++.| |+.+.+|++++++++.++++|++..
T Consensus 118 ~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R-~~~i~~~~~~~ee~~~~~e~g~~~~ 196 (279)
T 2xhe_B 118 AQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVAR-QCRVVEPSLSDDAIQKVIEHGTEGI 196 (279)
T ss_dssp THHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-SCCSSCCCCSSTTHHHHHHHC----
T ss_pred hhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCCHHHHHHHHhCCchHH
Confidence 2221223222 23 6699999999999999999999999998888888877765 4567789999999999999887655
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 161 IFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 240 (279)
Q Consensus 161 ~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA 240 (279)
|.+ .. ..++...+.++++||++|.+||++|.|||+||.|||+||++||++||+||+||+.|..||+.|..+|.+|
T Consensus 197 f~q--~~---~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA 271 (279)
T 2xhe_B 197 FSG--MR---LEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQA 271 (279)
T ss_dssp ------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------
T ss_pred HHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543 11 1123456788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccc
Q 023623 241 KKLQKNSR 248 (279)
Q Consensus 241 ~~~~~~~r 248 (279)
.+|+|++|
T Consensus 272 ~~~qk~~R 279 (279)
T 2xhe_B 272 RHYQESAR 279 (279)
T ss_dssp --------
T ss_pred HHHhHccC
Confidence 99999876
No 3
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=100.00 E-value=1.1e-34 Score=244.01 Aligned_cols=194 Identities=22% Similarity=0.399 Sum_probs=170.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 023623 6 LGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQ 85 (279)
Q Consensus 6 ~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~ 85 (279)
+.++.|++.|++|+..|..|+.++..|..+|..++..+++.+.+.++.+|+.++.+|+.+++.|+..|+.|+...
T Consensus 2 ~~~~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~----- 76 (196)
T 1fio_A 2 HDFVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG----- 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 468999999999999999999999999999999887766666668999999999999999999999999998752
Q ss_pred CCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHHHHH
Q 023623 86 KPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKA 165 (279)
Q Consensus 86 ~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~q~~ 165 (279)
...|++++++.+|+++|+++|.+|+.+|..|...||++++|+|.. .+|++++++++.++++|+...+|+++
T Consensus 77 --------~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i-~~~~~~~~e~~~~~~~~~~~~~f~~~ 147 (196)
T 1fio_A 77 --------IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMI-IQPEATEDEVEAAISDVGGQQIFSQA 147 (196)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCTTCCHHHHHHHTSHHHHHHHHHHH
T ss_pred --------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCCCCHHHHHHHHHcCCchhHHHHH
Confidence 135899999999999999999999999999999999999988755 46899999999988765455677777
Q ss_pred HHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 166 IQE-QGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQG 213 (279)
Q Consensus 166 l~~-~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qg 213 (279)
++. ++.+++..+++++++||++|.+||++|.|||+||.|||+||++||
T Consensus 148 ~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 148 LLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp TC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 654 345567788999999999999999999999999999999999998
No 4
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.97 E-value=4.9e-31 Score=200.14 Aligned_cols=97 Identities=37% Similarity=0.552 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 023623 173 QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 252 (279)
Q Consensus 173 ~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~ 252 (279)
+++.+++++++||++|.+||++|.|||+||.|||.||++||++||+||+||++|.+||++|..+|.+|.+|||++|||+|
T Consensus 8 ~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~ 87 (109)
T 3hd7_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 87 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcce
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023623 253 IAIIILLIIVAIIVVAV 269 (279)
Q Consensus 253 ~~i~i~~ii~~~i~~~i 269 (279)
|+++|++|+++++.+.+
T Consensus 88 i~l~~~~i~~~i~~~~~ 104 (109)
T 3hd7_B 88 MIIICCVILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHh
Confidence 88887777766554433
No 5
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.94 E-value=4.7e-27 Score=167.41 Aligned_cols=76 Identities=41% Similarity=0.632 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 023623 178 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 253 (279)
Q Consensus 178 l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~ 253 (279)
|+++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|.+||+.|..+|.+|.+|++++|||+||
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 2 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 6789999999999999999999999999999999999999999999999999999999999999999999998886
No 6
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.94 E-value=1.2e-26 Score=203.75 Aligned_cols=243 Identities=23% Similarity=0.417 Sum_probs=178.3
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 3 SGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT 82 (279)
Q Consensus 3 ~~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~ 82 (279)
+.+++|++||..|++|...|..+...+.+|..++...+.... ........++.++.+++.++..++..++.+......
T Consensus 37 ~~~~~m~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~ 114 (279)
T 3c98_B 37 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 114 (279)
T ss_dssp --CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS--CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999988765433 334567889999999999999999999988876443
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhHHH
Q 023623 83 SRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIF 162 (279)
Q Consensus 83 ~~~~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~~~ 162 (279)
... .++...+.+.+.+|+..|...|...+.+|...+..|...+++.+.+.. ...++.+++.+.......+....+.
T Consensus 115 ~~~---i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la-~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (279)
T 3c98_B 115 EEG---LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQL-EITGRTTTSEELEDMLESGNPAIFA 190 (279)
T ss_dssp HHT---TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTCCCCHHHHHHHHHSCCTTSST
T ss_pred hhh---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCccchHHHHHHHhhhhHHHH
Confidence 322 234456789999999999999999999999999998888888886543 4456777766654444444332222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 163 QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 242 (279)
Q Consensus 163 q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~ 242 (279)
..... ........+.++++|+.+|..|+.+|.+|+++|.+|+.+|.+||+++|+|++||+.+.++|+.|..+|.+|.+
T Consensus 191 ~~~~~--~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~ 268 (279)
T 3c98_B 191 SGIIM--DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 268 (279)
T ss_dssp TTSCS--CSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC--------
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111 1122345678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccchhHHH
Q 023623 243 LQKNSRKWMCI 253 (279)
Q Consensus 243 ~~~~~rk~~~~ 253 (279)
|++++|||+||
T Consensus 269 ~q~~~Rkkk~i 279 (279)
T 3c98_B 269 YQSKARRKKIM 279 (279)
T ss_dssp -----------
T ss_pred HHHHHhCcCcC
Confidence 99999999875
No 7
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.92 E-value=6.6e-25 Score=153.74 Aligned_cols=70 Identities=41% Similarity=0.646 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 023623 182 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM 251 (279)
Q Consensus 182 ~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~ 251 (279)
++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|.+||+.|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999985
No 8
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.91 E-value=1.6e-24 Score=156.27 Aligned_cols=76 Identities=41% Similarity=0.620 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 023623 173 QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR 248 (279)
Q Consensus 173 ~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~r 248 (279)
+++.++.++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+|++++|
T Consensus 8 ~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 8 ISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 3456889999999999999999999999999999999999999999999999999999999999999999999876
No 9
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.90 E-value=1e-23 Score=146.74 Aligned_cols=68 Identities=38% Similarity=0.479 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 178 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 245 (279)
Q Consensus 178 l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~ 245 (279)
|+++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|.+||++|..+|.+|.+|+|
T Consensus 2 l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 2 LAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999999999999999999999999999985
No 10
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.90 E-value=5.7e-24 Score=176.15 Aligned_cols=147 Identities=16% Similarity=0.357 Sum_probs=103.2
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 023623 4 GELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTS 83 (279)
Q Consensus 4 ~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~ 83 (279)
++++|+.||+.|++|+..|..|..++.+|+.+|..+++. +...+.++.+|+.++.+|+.+++.|+..|+.|+..+...
T Consensus 34 ~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~--~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 34 GGGFMEEFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA--PQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999999999999999999988765 445678899999999999999999999999999876543
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhcCCCCCHHHHHHHhhcC
Q 023623 84 RQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETG 156 (279)
Q Consensus 84 ~~~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~~~~i~~~~~t~eei~~~ie~~ 156 (279)
+++++++++.|+|++|+.+|+++|+++|.+|+.+|..|+..|+++++|+ +.|+||++|+++|++|+++|
T Consensus 112 ---~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~Rq-~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 112 ---EHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKRQ-MEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp ---C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC-------------------------
T ss_pred ---hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCHHHHHHHHhCc
Confidence 3455667788999999999999999999999999999999999999865 57789999999999999876
No 11
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.87 E-value=2e-22 Score=139.92 Aligned_cols=66 Identities=42% Similarity=0.673 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 176 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 241 (279)
Q Consensus 176 ~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~ 241 (279)
.+++++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|.+||++|..+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999999999999999999999999999999996
No 12
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.86 E-value=7.7e-22 Score=135.53 Aligned_cols=63 Identities=37% Similarity=0.698 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 180 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 242 (279)
Q Consensus 180 ~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~ 242 (279)
++++||++|.+||++|.||++||.|||.||.+||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 588999999999999999999999999999999999999999999999999999999999864
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.82 E-value=2e-19 Score=140.49 Aligned_cols=123 Identities=15% Similarity=0.313 Sum_probs=107.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 3 SGELGLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLT 82 (279)
Q Consensus 3 ~~~~~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~ 82 (279)
+++++|+.||+.|++|+..|..|+..+.+|..+|..+++.++ .++.++.+|+.++.+|+..++.|+..|+.|+..+..
T Consensus 2 ~~~~~m~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~--~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 2 DRDRFMDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPN--PDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999999877554 456799999999999999999999999999988654
Q ss_pred hccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 83 SRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYRE 130 (279)
Q Consensus 83 ~~~~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~ 130 (279)
. +++++++++.|+|++|+.+|+++|+++|.+|+.+|..|+..++.
T Consensus 80 ~---~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~ 124 (127)
T 1ez3_A 80 E---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKG 124 (127)
T ss_dssp H---HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred h---cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34567788899999999999999999999999987665555543
No 14
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=4.3e-08 Score=76.11 Aligned_cols=114 Identities=11% Similarity=0.236 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQK 86 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~ 86 (279)
.-++|-..++.|...|..|+.++..|+++... ++++.+...++++|+.+...++.+++.+...|+.|..-..
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~---LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~----- 79 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQ---LGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPL----- 79 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-----
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 34678889999999999999999999999876 3567788999999999999999999999999999986410
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 87 PGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREV 131 (279)
Q Consensus 87 ~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~ 131 (279)
. ....++|.++.+...|.++|..++++|+.+|..+....|..
T Consensus 80 -~--~~~~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~ 121 (130)
T 2dnx_A 80 -P--LSTSEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKES 121 (130)
T ss_dssp -C--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -c--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 12246789999999999999999999999987776655443
No 15
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.51 E-value=0.0051 Score=45.77 Aligned_cols=89 Identities=18% Similarity=0.274 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 023623 177 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAII 256 (279)
Q Consensus 177 ~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~ 256 (279)
...++.+=++.|..|..-..+|+.|..+=+.++..=...+++...||+.+...+.+|.+.=++++ +...|+++|++
T Consensus 19 R~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r----kk~~i~l~~~~ 94 (109)
T 3hd7_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR----RKKIMIIICCV 94 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----CcceehHHHHH
Confidence 34567777778888888899999999999999999999999999999999999999986644433 34477766666
Q ss_pred HHHHHHHHHHHHH
Q 023623 257 ILLIIVAIIVVAV 269 (279)
Q Consensus 257 i~~ii~~~i~~~i 269 (279)
++++|+.+++.+.
T Consensus 95 i~~~i~~~~~~~~ 107 (109)
T 3hd7_B 95 ILGIIIASTIGGI 107 (109)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccc
Confidence 6665555555443
No 16
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=97.42 E-value=0.0021 Score=46.66 Aligned_cols=85 Identities=13% Similarity=0.199 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCch
Q 023623 16 QDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRME-KDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTG 94 (279)
Q Consensus 16 ~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~-~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~ 94 (279)
.+....|.++...|+.|+++..+ +++..+...++..|+ .++..++.+.+.+. .+..|
T Consensus 6 ~d~~~li~t~s~niq~l~k~~~q---lGTkrD~~~LR~~l~~~l~~~~~~L~k~~~-~l~~l------------------ 63 (97)
T 1hs7_A 6 KELSNLIETFAEQSRVLEKECTK---IGSKRDSKELRYKIETELIPNCTSVRDKIE-SNILI------------------ 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---TTSSSCCHHHHHHHHHTHHHHHHHHHHHHH-HSTHH------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHHHH---hCCCcchHHHHHHHHHHHHHHHHHHHHHHH-Hhccc------------------
Confidence 34455666777777788777776 355667789999999 99999999999887 11111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 95 VDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEY 128 (279)
Q Consensus 95 ~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~ 128 (279)
.+...|..+|..+...|+.+|..|...-
T Consensus 64 ------~qkeRL~~dF~~l~~~fQ~~qr~y~ek~ 91 (97)
T 1hs7_A 64 ------HQNGKLSADFKNLKTKYQSLQQSYNQRK 91 (97)
T ss_dssp ------HHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------chhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1466888999999999999887765543
No 17
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.28 E-value=0.011 Score=42.51 Aligned_cols=58 Identities=12% Similarity=0.129 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNS 247 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~ 247 (279)
.+.++...+.|+.++..+==.-|-+.|+-||.+++-.+.-.. .|..--+.|++.+++.
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~---~s~~F~~~A~~l~rkm 63 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA---GASQFETSAAKLKRKY 63 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 466777888888888877777788999988888776665433 3333344555555544
No 18
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=96.83 E-value=0.0061 Score=42.87 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 181 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 245 (279)
Q Consensus 181 i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~ 245 (279)
+++-.+.+..|..+|..|++|-.+|+.=|..|..+||.++..++.+...+..+.+.+.+..+..+
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~ 78 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 78 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33445678899999999999999999999999999999999999999999999999988776543
No 19
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=96.80 E-value=0.017 Score=38.77 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 185 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 185 ~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
.+.+..|..++..|+.|-.+|+.=|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 9 D~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 9 DENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999999999887764
No 20
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.55 E-value=0.012 Score=39.43 Aligned_cols=56 Identities=11% Similarity=0.240 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 184 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 184 R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
-.+.+..|..++..|++|-.+|+.=|..|..+||+++..++.+...+..+.+.+.+
T Consensus 7 qD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 7 QDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999999999999999999999988877654
No 21
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=96.49 E-value=0.03 Score=39.75 Aligned_cols=56 Identities=20% Similarity=0.304 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 184 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 184 R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
-.+.+..|...+..|+.|-.+|+.=|..|..+||+|+..++.+...+..+.+.+.+
T Consensus 27 qD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 27 MDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999887764
No 22
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.87 E-value=0.04 Score=39.11 Aligned_cols=55 Identities=16% Similarity=0.332 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 185 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 185 ~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
.+.+..|...+..|+.|=.+|+.=|..|.++||+|+..++.+...+..+.+.+.+
T Consensus 29 D~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 29 ENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999887764
No 23
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.15 Score=33.89 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 186 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 238 (279)
Q Consensus 186 ~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~ 238 (279)
..+..|...+.-|+.|=.+|+.=|..|-++||+|+..++.+...+..+.+.|.
T Consensus 10 ~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~ 62 (64)
T 3b5n_D 10 RNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLA 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678889999999999999999999999999999999999999999888775
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.29 E-value=0.17 Score=32.40 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 197 ELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 238 (279)
Q Consensus 197 eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~ 238 (279)
|-.++=..-...+..||+-|++|+.++..+..++..|.+.|.
T Consensus 11 ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 11 ESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 333444455567889999999999999999999999998874
No 25
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.04 E-value=0.0061 Score=46.05 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 225 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 225 (279)
.|.++...+.|+.++..+==.-|-+.||-||.+++..+.
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 344566666777666666666677888888777665554
No 26
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=93.44 E-value=0.87 Score=30.68 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 208 LVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 243 (279)
Q Consensus 208 LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~ 243 (279)
+...||+-|++||.|++.+..+...|.+.|..=..+
T Consensus 34 ~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 34 MLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 567899999999999999999999999988765444
No 27
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=91.54 E-value=2.4 Score=29.19 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 191 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 191 Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
..+-+.|-.++=.........||+.|++|+.++..+..++..|.+.|..
T Consensus 28 ~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 28 MLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 3334444455555666678899999999999999999999999988853
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=88.34 E-value=1 Score=31.40 Aligned_cols=33 Identities=27% Similarity=0.479 Sum_probs=26.8
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 205 MAVLVDAQGDMLDNIESQVSSAVDHVQSGNTAL 237 (279)
Q Consensus 205 la~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L 237 (279)
=..+...||+-|+|||.+++....+...|.+.|
T Consensus 46 Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 46 TLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677899999999999999888887776554
No 29
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=77.08 E-value=2.3 Score=31.68 Aligned_cols=9 Identities=33% Similarity=0.460 Sum_probs=3.7
Q ss_pred HHHHHhhcc
Q 023623 239 KAKKLQKNS 247 (279)
Q Consensus 239 kA~~~~~~~ 247 (279)
.|++.+++.
T Consensus 83 ~A~kl~rkm 91 (119)
T 2kog_A 83 SAAKLKRKY 91 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 30
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=74.45 E-value=19 Score=25.15 Aligned_cols=17 Identities=18% Similarity=0.433 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023623 176 DTLAEIQERHDAVRDLE 192 (279)
Q Consensus 176 ~~l~~i~~R~~eI~~Ie 192 (279)
..++.+-+|.+.|..|.
T Consensus 23 ~NI~kvL~RgekL~~L~ 39 (91)
T 3hd7_A 23 VNVDKVLERDQKLSELD 39 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHH
Confidence 34455555655555444
No 31
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=70.59 E-value=1.9 Score=29.80 Aligned_cols=55 Identities=29% Similarity=0.291 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 023623 214 DMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVA 268 (279)
Q Consensus 214 e~id~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~~ 268 (279)
.|-|.+++.++...+.+..+.+=|+.|.+--++-....+....++++++.+|.+.
T Consensus 13 ~~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 13 QSNNQVEKLVEAPVEFVREGTQFLAKCKKPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp --------CCHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888889999999988888877666655555555555555555544443
No 32
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=68.12 E-value=36 Score=25.55 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC-C
Q 023623 11 FFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPG-C 89 (279)
Q Consensus 11 f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~-~ 89 (279)
||...+++...|..++.....-..+..... .+ .+.+++.+..++...+..+.-.|.+|++.....++.+. .
T Consensus 29 F~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~---~~-----s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF 100 (130)
T 4dnd_A 29 FFVVRGEVQKAVNTARGLYQRWCELLQESA---AV-----GREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKF 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCC---Cc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhc
Confidence 778888999988888777765554443211 11 12355566666666777777777777665432221110 0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH
Q 023623 90 GKGTGVDRSRTATTLGLKKKFKD 112 (279)
Q Consensus 90 ~~~~~~~rir~~~~~~L~~~f~~ 112 (279)
+-+..+..-|+..+..+...+.+
T Consensus 101 ~l~~~Ei~~Rr~fV~~~r~~I~~ 123 (130)
T 4dnd_A 101 KLPAGDLQERKVFVERMREAVQE 123 (130)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 11123344455555555544443
No 33
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=67.90 E-value=23 Score=23.36 Aligned_cols=62 Identities=21% Similarity=0.298 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 180 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 241 (279)
Q Consensus 180 ~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~ 241 (279)
++..=+..|..|..-..+|+.|..+=+.+|..=..-++....||+.+...+.+|...-++++
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 68 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSR 68 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45555667778888889999999999999998888999999999999999999987665544
No 34
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=65.63 E-value=7.9 Score=21.79 Aligned_cols=26 Identities=38% Similarity=0.462 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCC
Q 023623 252 CIAIIILLIIVAIIVVAVIKPWSSNK 277 (279)
Q Consensus 252 ~~~i~i~~ii~~~i~~~i~~~~~~~~ 277 (279)
..+++++++|+..-++.|+...+.|+
T Consensus 8 g~Gvl~LLviV~LgV~LI~f~~kAns 33 (35)
T 2lk9_A 8 GIGILVLLIIVILGVPLIIFTIKKKK 33 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred cccHHHHHHHHHhcchheEEeeeccc
Confidence 45666666665544444555666654
No 35
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=65.60 E-value=25 Score=22.95 Aligned_cols=53 Identities=13% Similarity=0.263 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023623 181 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSG 233 (279)
Q Consensus 181 i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a 233 (279)
+..=++.|..|-.-..+|..|..+=+.+|..=..-++....||+.+...+.+|
T Consensus 14 i~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 14 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444555555555555555555555555555555555555544
No 36
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.66 E-value=95 Score=28.89 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 58 DVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENI 124 (279)
Q Consensus 58 l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~ 124 (279)
..+.+++....++..|..|+.... ..+ .+...|...+.+...+-|+++..+
T Consensus 104 NdNtynE~S~ELRRrIqyLKekVd--------------nQl--snIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 104 RDNTYNRVSEDLRSRIEVLKRKVI--------------EKV--QHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHH--------------HHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHH--------------HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566667766665532 112 334455556666555555554443
No 37
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=61.92 E-value=30 Score=22.49 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 197 ELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 238 (279)
Q Consensus 197 eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~ 238 (279)
|--++=.....-...|+|.|.+....+..+..++..|.+-|.
T Consensus 20 ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 20 ETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 333444455556788999999999999999999999987775
No 38
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=61.81 E-value=31 Score=22.62 Aligned_cols=55 Identities=11% Similarity=0.267 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023623 181 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNT 235 (279)
Q Consensus 181 i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~ 235 (279)
+..=.+.|..|-.-..+|..|..+=+.+|..=..-++.-..||+.+...+.+|.+
T Consensus 12 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 12 LLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555666666666666655555666666666666666655543
No 39
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=59.11 E-value=39 Score=22.98 Aligned_cols=61 Identities=11% Similarity=0.249 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 181 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 243 (279)
Q Consensus 181 i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~~ 243 (279)
++..++.|.+|-.+...+.-...-+..-|..+|.+ .|--+...|....+.....|.+++..
T Consensus 15 Iq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~ 75 (80)
T 3n27_A 15 IESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQK 75 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHH
Confidence 66677777777777777777777766667777765 57778889999999999999988764
No 40
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.69 E-value=1e+02 Score=27.39 Aligned_cols=64 Identities=25% Similarity=0.329 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 16 QDIDKEYEKLEKLLKKLQGAHEESKSVTKA--PAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 16 ~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~--~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
..+...|+.|+..+..+.+.++.+-..+.. .-.+.--.+.+..-+.++.....++.+|..|++.
T Consensus 63 r~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~ 128 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRK 128 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777654221110 0011111233333444555555566666655554
No 41
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=56.30 E-value=41 Score=22.78 Aligned_cols=47 Identities=9% Similarity=0.052 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSG 233 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a 233 (279)
-|..||..+.-.-+...+|+..|..|...||+....+..-.+.+...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677788888888888888889999999999988887766665443
No 42
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=55.50 E-value=39 Score=21.82 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023623 181 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 234 (279)
Q Consensus 181 i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~ 234 (279)
+..=++.|..|-.-..+|+.|..+=+.+|..=..-+++...||+.+...+.+|.
T Consensus 11 i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 11 IRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333444555555556666666666666666666666666666666666665553
No 43
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=54.88 E-value=83 Score=25.39 Aligned_cols=72 Identities=17% Similarity=0.304 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023623 159 EQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 231 (279)
Q Consensus 159 ~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~ 231 (279)
.++++. +.+.++..+..+|.+-+.=|.+|..++.-|..|.++-.+|..|+..=..|.+-|+.=+....++.+
T Consensus 96 e~YWk~-lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e 167 (209)
T 2wvr_A 96 SQYWKE-VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFE 167 (209)
T ss_dssp TTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 345543 334444444567777777777777777777777777777777666666665555555555444443
No 44
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=52.37 E-value=51 Score=22.21 Aligned_cols=65 Identities=18% Similarity=0.352 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 8 LENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELD 77 (279)
Q Consensus 8 ~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~ 77 (279)
-..|......|...+.+....+.+++.-...- +.....+-.++..--.-|+..+..|..+|+.++
T Consensus 11 A~sFN~A~~~i~~g~~tts~AL~kiQdVVN~q-----~~aL~~L~~qL~~NFgAISssi~dIy~RLd~le 75 (77)
T 2bez_C 11 ANQFNKAISQIQESLTTTSTALGKLQDVVNQN-----AQALNTLVKQLSSNFGAISSVLNDILSRLDKVE 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhh
Confidence 35788889999999999998888888766542 112223333333333344444445555554443
No 45
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.33 E-value=54 Score=22.51 Aligned_cols=51 Identities=16% Similarity=0.344 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 160 QIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDA 211 (279)
Q Consensus 160 ~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~ 211 (279)
.+++ .+.+.++.....+|.+-+.=|..|..++.-|..|..+...|..|+..
T Consensus 28 ~YWk-~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 28 QYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 34444554556788888899999999999999999999999888864
No 46
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=50.31 E-value=9.1 Score=23.06 Aligned_cols=8 Identities=50% Similarity=1.219 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023623 252 CIAIIILL 259 (279)
Q Consensus 252 ~~~i~i~~ 259 (279)
|+++++++
T Consensus 36 clilicll 43 (52)
T 1fjk_A 36 CLILIFLL 43 (52)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 47
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=48.90 E-value=57 Score=21.75 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 179 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 242 (279)
Q Consensus 179 ~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~kA~~ 242 (279)
.++..=++.|..|-.-..+|+.|..+=+.+|..=..-++....||+.+...+.+|.+.-+++++
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455556667777777888888888888888888888888888888888888888876655544
No 48
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=47.81 E-value=7.5 Score=32.38 Aligned_cols=215 Identities=12% Similarity=0.160 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCC
Q 023623 9 ENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPG 88 (279)
Q Consensus 9 ~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~ 88 (279)
++.-..++.|...+..+......+....... .........+...+..+...+......+....+........ ..
T Consensus 50 e~i~~~i~~i~~~v~el~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~~~----~~ 123 (279)
T 3c98_B 50 EEIRGFIDKIAENVEEVKRKHSAILASPNPD--EKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRS----SA 123 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSSCC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----SH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc----hH
Confidence 3455566777777777766655543222211 11122334556677777777777777776666554432110 00
Q ss_pred CCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------hHhhcCCCCCHHHHHHHhhcCC
Q 023623 89 CGKG-TGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERR----------VYTVTGKRADEETIDQLIETGD 157 (279)
Q Consensus 89 ~~~~-~~~~rir~~~~~~L~~~f~~~~~~fq~~q~~~~~~~~~~~~r~----------~~~i~~~~~t~eei~~~ie~~~ 157 (279)
.... ......-..-......+|.+.-..|..+. ....+....+- ...+.+. +......+.....
T Consensus 124 ~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vv---a~evr~la~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 198 (279)
T 3c98_B 124 DLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERC---KGRIQRQLEITGRTTTSEELEDMLESGN--PAIFASGIIMDSS 198 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTCCCCHHHHHHHHHSCC--TTSSTTTSCSCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccCccchHHHHHHHhhh--hHHHHHHHHHHHH
Confidence 0000 01122222333456778888888887542 23333332210 0011110 1100001111110
Q ss_pred -hhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 158 -SEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTA 236 (279)
Q Consensus 158 -~~~~~q~~l~~~~~~~~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~ 236 (279)
...... .+......+..=...|..|...+.+|..+..+-+..+.+=...|+.+..+++.+...+.+|...
T Consensus 199 ~~~~~~~---------~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~ 269 (279)
T 3c98_B 199 ISKQALS---------EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 269 (279)
T ss_dssp STTHHHH---------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred HHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 1112233445555667777788888888888888888887888888999999999999999887
Q ss_pred HHHHHHH
Q 023623 237 LQKAKKL 243 (279)
Q Consensus 237 L~kA~~~ 243 (279)
-.++++.
T Consensus 270 q~~~Rkk 276 (279)
T 3c98_B 270 QSKARRK 276 (279)
T ss_dssp -------
T ss_pred HHHHhCc
Confidence 7766654
No 49
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=46.00 E-value=4.3 Score=30.41 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred cchhHHHHHHHH
Q 023623 247 SRKWMCIAIIIL 258 (279)
Q Consensus 247 ~rk~~~~~i~i~ 258 (279)
.+.|++.+++++
T Consensus 102 ~~~~~~~~i~~~ 113 (130)
T 3fym_A 102 SKEPIQLLVIMG 113 (130)
T ss_dssp ------------
T ss_pred hhhHHHHHHHHH
Confidence 334443333333
No 50
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=45.08 E-value=70 Score=21.69 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 178 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTA 236 (279)
Q Consensus 178 l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~ 236 (279)
..++..=++.|..|-.-..+|+.|..+=+.+|..=..-++....||+.+...+.+|.+.
T Consensus 20 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 20 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777888888888888888888888888888888888888888654
No 51
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=41.41 E-value=1e+02 Score=22.59 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHH
Q 023623 18 IDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGK 64 (279)
Q Consensus 18 i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~ 64 (279)
.+.+|..++..++.++..........+..--.....+++.++.+|.+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~ 54 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIAR 54 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888776665544444444334444555555444443
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=41.27 E-value=2.2e+02 Score=26.46 Aligned_cols=29 Identities=10% Similarity=0.162 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 51 IKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 51 l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
|+.-|+..-.+++..+.++++.++++++.
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKn 79 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKN 79 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhh
Confidence 55566666667777777777777777543
No 53
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=40.09 E-value=7.3 Score=26.37 Aligned_cols=44 Identities=7% Similarity=0.079 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 023623 218 NIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLII 261 (279)
Q Consensus 218 ~Ie~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii 261 (279)
.++..++...+.+..+..=++.|.+--++-....+....+++++
T Consensus 4 ~~~~~~e~~~~f~kd~~rvlk~~~KPdr~EF~~iak~~~iG~~i 47 (74)
T 1rh5_B 4 DFNQKIEQLKEFIEECRRVWLVLKKPTKDEYLAVAKVTALGISL 47 (74)
T ss_dssp --------CCHHHHHHHHHHHSEECCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34445566666677676666666554444333333333333333
No 54
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=40.06 E-value=94 Score=21.78 Aligned_cols=84 Identities=13% Similarity=0.247 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC
Q 023623 11 FFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCG 90 (279)
Q Consensus 11 f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~ 90 (279)
|+...+++...|..+...+.. +. ..+++ ..+.++.....++......+...|.-+++.
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~----~~---~~~~~----~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------- 65 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITR----HN---TAGDD----DQEEEIQDILKDVEETIVDLDRSIIVMKRD----------- 65 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TC---CC--C----TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----cc---CCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------
Confidence 677788888888888887554 11 11222 223444445455555555555555554432
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH
Q 023623 91 KGTGVDRSRTATTLGLKKKFKDKMGEF 117 (279)
Q Consensus 91 ~~~~~~rir~~~~~~L~~~f~~~~~~f 117 (279)
...+..-|+..+..+.+.+..+-..+
T Consensus 66 -~~~EI~~Rk~~v~~l~~~i~~lk~~~ 91 (95)
T 2c5k_T 66 -ENEDVSGREAQVKNIKQQLDALKLRF 91 (95)
T ss_dssp -TTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12344567777777777766555444
No 55
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.49 E-value=1e+02 Score=21.64 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 023623 187 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSA 226 (279)
Q Consensus 187 eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a 226 (279)
.|.++...+.|+..+..+==.-|.+.|+-||.++.-.+.-
T Consensus 31 ~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L 70 (96)
T 1sfc_A 31 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4667777888888888887778889999988887666553
No 56
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=36.39 E-value=3.2 Score=27.72 Aligned_cols=48 Identities=15% Similarity=0.161 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH
Q 023623 221 SQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVA 268 (279)
Q Consensus 221 ~nv~~a~~~v~~a~~~L~kA~~~~~~~rk~~~~~i~i~~ii~~~i~~~ 268 (279)
.-++...+.++...+=++.|.+--++-....+....++++++.+|.+.
T Consensus 6 ~~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~iak~~~iG~~i~G~IGf~ 53 (68)
T 2wwb_B 6 QFVEPSRQFVKDSIRLVKRCTKPDRKEFQKIAMATAIGFAIMGFIGFF 53 (68)
T ss_dssp SSSTTHHHHHHHHHHHHHHCCCCCTHHHHHHHHHSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777776655554444444444444444444433
No 57
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.89 E-value=73 Score=19.27 Aligned_cols=25 Identities=12% Similarity=0.316 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 101 ATTLGLKKKFKDKMGEFQVLRENIH 125 (279)
Q Consensus 101 ~~~~~L~~~f~~~~~~fq~~q~~~~ 125 (279)
+....|..+|..++.+|...|.+.+
T Consensus 12 ~~ld~LqTr~ArLlae~~ssq~KlK 36 (46)
T 3swy_A 12 SSLDTLQTRFARLLAEYNATQMKMK 36 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888999999999998765543
No 58
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=34.37 E-value=73 Score=18.82 Aligned_cols=28 Identities=18% Similarity=0.460 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023623 10 NFFKKVQDIDKEYEKLEKLLKKLQGAHE 37 (279)
Q Consensus 10 ~f~~~v~~i~~~i~~i~~~i~~l~~l~~ 37 (279)
+.++.++.|..+|...+..|.+++....
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlk 33 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQ 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666777777777777766665554
No 59
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=31.09 E-value=26 Score=23.85 Aligned_cols=6 Identities=17% Similarity=0.645 Sum_probs=2.9
Q ss_pred HHHhcc
Q 023623 267 VAVIKP 272 (279)
Q Consensus 267 ~~i~~~ 272 (279)
+.|++|
T Consensus 18 LlvfGp 23 (78)
T 2l16_A 18 LIIFGP 23 (78)
T ss_dssp HHHSCT
T ss_pred hheeCc
Confidence 335555
No 60
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.95 E-value=1.4e+02 Score=21.05 Aligned_cols=56 Identities=5% Similarity=0.211 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hhcCChhhHHHHHHHHHHHHHHHHHHHH
Q 023623 9 ENFFKKVQDIDKEYEKLEKLLKKLQGAHEES---KSVTKAPAMKAIKKRMEKDVDEVGKISR 67 (279)
Q Consensus 9 ~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~---~~~~~~~~~~~l~~~i~~l~~~i~~~~~ 67 (279)
......+++++.+|.+-...-+-|.+++.-+ -.+.++.. +..+|+.....|..+-.
T Consensus 18 kkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s---~~~~L~e~~~kid~L~~ 76 (98)
T 2ke4_A 18 KRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPAS---LEPQIAETLSNIERLKL 76 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGG---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHH---HHHHHHHHHHHHHHHHH
Confidence 3566788888888888887777777777644 23444433 34455555444444333
No 61
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=30.61 E-value=1.4e+02 Score=22.21 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023623 101 ATTLGLKKKFKDKMGEFQV 119 (279)
Q Consensus 101 ~~~~~L~~~f~~~~~~fq~ 119 (279)
+.+..+...+.++-..-.-
T Consensus 74 ~~l~sie~dLeDLe~sI~i 92 (130)
T 4dnd_A 74 NGLRSIEWDLEDLEETIGI 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555443
No 62
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=30.56 E-value=1.3e+02 Score=20.57 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 174 IMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDA 211 (279)
Q Consensus 174 ~~~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~ 211 (279)
...+|.+-+.=|+.|..+...|..|.+.-.+|..|..+
T Consensus 33 L~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 33 LYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556555555666666666666666665555555544
No 63
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=30.11 E-value=1.4e+02 Score=20.76 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQG 34 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~ 34 (279)
-+..|++.|..+...-..+...+..+..
T Consensus 17 RlAsyIdKVR~LEqqN~~Le~~i~~l~~ 44 (93)
T 3s4r_A 17 RFANLIDKVRFLEQQNKILLAELEQLKG 44 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4668888888888888888877766654
No 64
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=29.88 E-value=1.3e+02 Score=20.35 Aligned_cols=36 Identities=6% Similarity=0.219 Sum_probs=23.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 43 TKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDR 78 (279)
Q Consensus 43 ~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~ 78 (279)
++|......-.++.....++......++..+..|..
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567666666666666666666667777776666654
No 65
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=28.91 E-value=1.6e+02 Score=21.21 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKKLQGAHEES 39 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~ 39 (279)
.+..-...+++++..|...+..+..+.-|..+.
T Consensus 39 aL~~Kq~~idelk~ei~q~~~~lE~I~vLkaQv 71 (110)
T 2v4h_A 39 ALVAKQELIDKLKEEAEQHKIVMETVPVLKAQA 71 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556667777777777777777666666654
No 66
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=28.10 E-value=1.3e+02 Score=19.79 Aligned_cols=37 Identities=16% Similarity=0.339 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023623 189 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 225 (279)
Q Consensus 189 ~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 225 (279)
.++...+.|+..+..+==.-|-+.|+-||.+..-.+.
T Consensus 11 ~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 11 KHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455556666666555555677788887777655544
No 67
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=27.93 E-value=1.4e+02 Score=20.00 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 100 TATTLGLKKKFKDKMGEFQVLRENIHQ 126 (279)
Q Consensus 100 ~~~~~~L~~~f~~~~~~fq~~q~~~~~ 126 (279)
.+....|..+|..++.+|...|.+.+.
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~KLKq 39 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQKLKQ 39 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366778889999999999988765543
No 68
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=27.24 E-value=43 Score=18.91 Aligned_cols=24 Identities=13% Similarity=0.432 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccccC
Q 023623 252 CIAIIILLIIVAIIVVAVIKPWSS 275 (279)
Q Consensus 252 ~~~i~i~~ii~~~i~~~i~~~~~~ 275 (279)
.+-.++++++++.++..-+.-|++
T Consensus 9 alt~i~gl~vif~~lg~tflywrg 32 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRG 32 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCceeEEEcc
Confidence 344455555555555555555653
No 69
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=26.62 E-value=98 Score=17.88 Aligned_cols=30 Identities=10% Similarity=0.252 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023623 190 DLERKLLELQQIFLDMAVLVDAQGDMLDNI 219 (279)
Q Consensus 190 ~Ie~sI~eL~~lF~dla~LV~~Qge~id~I 219 (279)
.+.+++..++.-+..+...|.+||..+...
T Consensus 3 q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 3 QIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 455666777777777778888888887654
No 70
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=26.35 E-value=2.1e+02 Score=21.66 Aligned_cols=67 Identities=19% Similarity=0.357 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 8 LENFFKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 8 ~~~f~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
-..|......+...+.+....+.+++.-...- +.....+-.++..--.-|+..+..|..+|+.++..
T Consensus 24 A~sFN~A~~~~~~g~~tts~AL~kiQ~VVN~q-----~~aL~~l~~qL~~nFgAISssi~dIy~rLd~leAd 90 (149)
T 1wyy_A 24 ANQFNKAISQIQESLTTTSTALGKLQDVVNQN-----AQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAE 90 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 35788888889999999888888887766542 22233344455555555666666777777777665
No 71
>1yod_A Water-solublized phospholamban; protein design, water-soluble, de novo protein; 1.80A {Synthetic}
Probab=25.98 E-value=51 Score=17.65 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 023623 252 CIAIIILL 259 (279)
Q Consensus 252 ~~~i~i~~ 259 (279)
|++.++++
T Consensus 15 cLilICll 22 (30)
T 1yod_A 15 CLREICQE 22 (30)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 72
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=24.86 E-value=2.3e+02 Score=23.56 Aligned_cols=209 Identities=11% Similarity=0.146 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhc----CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCc
Q 023623 18 IDKEYEKLEKLLKKLQGAHEESKSV----TKAPAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGT 93 (279)
Q Consensus 18 i~~~i~~i~~~i~~l~~l~~~~~~~----~~~~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~~~~~~~~~~~~~~~ 93 (279)
.-.....|...+..+.......... ...... .....+..++..+...|+..++.+..........
T Consensus 46 F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~----~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~------- 114 (279)
T 2xhe_B 46 FFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSK----EDRDRLNEKLQDTMARISALGNKIRADLKQIEKE------- 114 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 4455666666666666665544221 111111 1122466777777778887777777664432110
Q ss_pred hhHHHHH--------H--HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhHhhcCCCCCHHHHHHHhhcCChhH
Q 023623 94 GVDRSRT--------A--TTLGLKKKFKDKMGEFQVLRENIHQE---YREVVERRVYTVTGKRADEETIDQLIETGDSEQ 160 (279)
Q Consensus 94 ~~~rir~--------~--~~~~L~~~f~~~~~~fq~~q~~~~~~---~~~~~~r~~~~i~~~~~t~eei~~~ie~~~~~~ 160 (279)
..+.+. . -...-......+..+|+.+-..|+.- |+++++.+..... ..+... . . ++.
T Consensus 115 -~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~--~i~~~~----~-~--~ee 184 (279)
T 2xhe_B 115 -NKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQC--RVVEPS----L-S--DDA 184 (279)
T ss_dssp -HHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSC--CSSCCC----C-S--STT
T ss_pred -HHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCC----C-C--HHH
Confidence 000110 0 11233445666777888776666543 4444443322111 111110 0 1 111
Q ss_pred HHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 161 IFQKAIQEQGRGQIM-DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 239 (279)
Q Consensus 161 ~~q~~l~~~~~~~~~-~~l~~i~~R~~eI~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~a~~~v~~a~~~L~k 239 (279)
...++......... ......+.-..+|..=++.|.+|..-..+|+.|..+=+.||..=..-+.....||+.+...+.+
T Consensus 185 -~~~~~e~g~~~~f~q~~~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~ 263 (279)
T 2xhe_B 185 -IQKVIEHGTEGIFSGMRLEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKK 263 (279)
T ss_dssp -HHHHHHHC-----------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC--
T ss_pred -HHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 12222211111111 1111222223355566788999999999999999888888887788888889999999888888
Q ss_pred HHHHhhccc
Q 023623 240 AKKLQKNSR 248 (279)
Q Consensus 240 A~~~~~~~r 248 (279)
|...=+++.
T Consensus 264 ~~~~l~kA~ 272 (279)
T 2xhe_B 264 ATEQVVQAR 272 (279)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 887766554
No 73
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=23.80 E-value=1.7e+02 Score=19.59 Aligned_cols=38 Identities=8% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 225 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 225 (279)
|.++...+.|+..+..+==.-|.+.|+-||.++.-.+.
T Consensus 17 l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 17 LQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44566666677666666666677888888877665554
No 74
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=22.83 E-value=1.9e+02 Score=19.91 Aligned_cols=22 Identities=9% Similarity=0.148 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023623 8 LENFFKKVQDIDKEYEKLEKLL 29 (279)
Q Consensus 8 ~~~f~~~v~~i~~~i~~i~~~i 29 (279)
+..|...++++..+|......+
T Consensus 4 L~~f~~~l~el~~WL~e~e~~l 25 (118)
T 3uul_A 4 LDSYQIALEEVLTWLLSAEDTF 25 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666555443
No 75
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.76 E-value=4.2e+02 Score=23.49 Aligned_cols=29 Identities=3% Similarity=0.105 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 51 IKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 51 l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
|+.-|+....+++..+..++..|..+.+.
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s 82 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKN 82 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 44555555555666666666666655543
No 76
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=21.68 E-value=2e+02 Score=19.74 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023623 7 GLENFFKKVQDIDKEYEKLEKLLKK 31 (279)
Q Consensus 7 ~~~~f~~~v~~i~~~i~~i~~~i~~ 31 (279)
.+..|...++++..+|......+..
T Consensus 3 ~L~~F~~~l~el~~WL~~~e~~l~~ 27 (119)
T 3uun_A 3 NLDRYQTALEEVLSWLLSAEDTLQA 27 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3567777777777777776655543
No 77
>3um3_B Charged multivesicular BODY protein 4B; alpha-helix of C-terminal tail of CHMP4B, ESCRT-III, CHMPS, protein-transport protein complex, BROX; 3.80A {Homo sapiens}
Probab=20.55 E-value=2.4e+02 Score=20.11 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCChhhHHHHHHHHHHHHHH
Q 023623 12 FKKVQDIDKEYEKLEKLLKKLQGAHEESKSVTKAPAMKAIKKRMEKDVDE 61 (279)
Q Consensus 12 ~~~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~~~~~~l~~~i~~l~~~ 61 (279)
.+.|+.+-..+.......++|...-.....+....+...+..+++.|..+
T Consensus 5 idkVe~lmDei~E~~e~~~EI~e~Ls~~~~~~~~~DEdELe~ELe~Le~e 54 (104)
T 3um3_B 5 IDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEELEQE 54 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 35677777777777777788877776543333344566788888877543
No 78
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=20.50 E-value=1.8e+02 Score=18.65 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023623 188 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 225 (279)
Q Consensus 188 I~~Ie~sI~eL~~lF~dla~LV~~Qge~id~Ie~nv~~ 225 (279)
|..+...+.++..+..+=-.-|.+-|+-|+.++.-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666777777777777766555
No 79
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=20.19 E-value=5e+02 Score=23.70 Aligned_cols=66 Identities=15% Similarity=0.195 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023623 14 KVQDIDKEYEKLEKLLKKLQGAHEESKSVTKA--PAMKAIKKRMEKDVDEVGKISRFIKSKIEELDRE 79 (279)
Q Consensus 14 ~v~~i~~~i~~i~~~i~~l~~l~~~~~~~~~~--~~~~~l~~~i~~l~~~i~~~~~~i~~~l~~l~~~ 79 (279)
.=..+...|++|+..+.++.+.++..-..... .-.+.--.+.+..-+.++.....++.++..|++.
T Consensus 59 qerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~k 126 (491)
T 1m1j_A 59 TDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQR 126 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 33567778888888888888777654221110 0111122333344444555555666666665554
Done!