BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023624
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 206 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 259
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 216 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 269
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 216 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 269
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 221 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 274
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 228 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 281
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 216 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 269
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 126 SEKKLQFFTARQIACRLLGSQGYLCQKCWIAMEDCMCSKVKHCSLWYG---VRF 176
S+ +Q + RQ ++GY C + A +DC+ +VK+C + G VRF
Sbjct: 206 SDLSMQIVSERQEVLLCKFAEGYNCALQYDATDDCVTCEVKNCPVLAGDIKVRF 259
>pdb|2OFJ|A Chain A, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|B Chain B, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|C Chain C, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
pdb|2OFJ|D Chain D, Crystal Structure Of The E190a Mutant Of
O-succinylbenzoate Synthase From Escherichia Coli
Length = 323
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 23 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 65
>pdb|1R6W|A Chain A, Crystal Structure Of The K133r Mutant Of
O-Succinylbenzoate Synthase (Osbs) From Escherichia
Coli. Complex With Shchc
Length = 322
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 22 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 64
>pdb|1FHV|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate
Synthase From E. Coli Complexed With Mg And Osb
Length = 323
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 23 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 65
>pdb|1FHU|A Chain A, Crystal Structure Analysis Of O-Succinylbenzoate
Synthase From E. Coli
Length = 320
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 47 RETHIGDTDDGFITLQEWQ--GWGAVSPLPALVQQIVEDLKAL 87
R+ + D ++ L+E + GWG +SPLP Q+ E+ +++
Sbjct: 20 RDRRLKTRDGLYVCLREGEREGWGEISPLPGFSQETWEEAQSV 62
>pdb|3GC2|A Chain A, 1.85 Angstrom Crystal Structure Of O-Succinylbenzoate
Synthase From Salmonella Typhimurium In Complex With
Succinic Acid
Length = 323
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 47 RETHIGDTDDGFITLQ--EWQGWGAVSPLPALVQQIVED 83
R+ + D ++ L+ E +GWG +SPLP Q+ E+
Sbjct: 23 RDRRLKTRDGLYVCLRDGEREGWGEISPLPGFSQETWEE 61
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,282,669
Number of Sequences: 62578
Number of extensions: 345049
Number of successful extensions: 777
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 765
Number of HSP's gapped (non-prelim): 38
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)