BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023625
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 267 bits (682), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/281 (46%), Positives = 189/281 (67%), Gaps = 5/281 (1%)
Query: 1 MRILVHSGFFA--QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWL 58
MR L H+GFF ++++ Y LT AS LL++ + L AP V+ V DP + ++H L W+
Sbjct: 75 MRYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWI 134
Query: 59 QNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLV 118
+D +LF G WD + P++ + F D M +DS+LI + ++DC VF+GL+S+V
Sbjct: 135 YEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLI-NLALRDCDFVFDGLESIV 193
Query: 119 DVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLL 178
DV GGTG A+ I FP +KC VFD P VV+NL G+N NL ++GG+MF +IP A+AVLL
Sbjct: 194 DVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN-NLTYVGGDMFTSIPNADAVLL 252
Query: 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV 238
K+ILHNW D++ +++LKKCKEA+ + + GKV IIDM I+ + + + + +L D+ M
Sbjct: 253 KYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA 312
Query: 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
L GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 313 CL-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 258 bits (660), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 127/286 (44%), Positives = 188/286 (65%), Gaps = 10/286 (3%)
Query: 1 MRILVHSGFFA-------QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHC 53
MR L H+GFF + +++ Y LT AS LL+K T L AP V+ V DP +T+FH
Sbjct: 75 MRYLAHNGFFEIITNQELENEEEAYALTVASELLVKGTELCLAPMVECVLDPTLSTSFHN 134
Query: 54 LGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
L W+ +D +LF G +W+ + P++ +L+ D + +DS++I + +KDC VFEG
Sbjct: 135 LKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTLYNDALASDSKMI-NLAMKDCNLVFEG 193
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173
L+S+VDV GG G + I FP + C VFD P VV+NL G+N NL ++GG+MF ++P+A
Sbjct: 194 LESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSN-NLTYVGGDMFISVPKA 252
Query: 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCF 233
+AVLLK +LH+W D++ +K+LKKCKEA+ S + GKVI+IDM I + + + + +L
Sbjct: 253 DAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGKVIVIDMVINEKKDENQLTQIKLLM 312
Query: 234 DILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
++ +S GKER+ ++WKKLF+ AGF YKI+P G+ SLIE YP
Sbjct: 313 NV-TISCVNGKERNEEEWKKLFIEAGFQDYKISPFTGLMSLIEIYP 357
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 253 bits (646), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 126/280 (45%), Positives = 184/280 (65%), Gaps = 5/280 (1%)
Query: 2 RILVHSGFFA--QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQ 59
R L H+GFF ++++ Y LT AS LL++ + L AP V+ V DP + ++H L W+
Sbjct: 76 RYLAHNGFFEIITKEEESYALTVASELLVRGSDLCLAPXVECVLDPTLSGSYHELKKWIY 135
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVD 119
+D +LF G WD + P++ + F D +DS+LI + ++DC VF+GL+S+VD
Sbjct: 136 EEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAXASDSKLI-NLALRDCDFVFDGLESIVD 194
Query: 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLK 179
V GGTG A+ I FP +KC VFD P VV+NL G+N NL ++GG+ F +IP A+AVLLK
Sbjct: 195 VGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSN-NLTYVGGDXFTSIPNADAVLLK 253
Query: 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239
+ILHNW D++ +++LKKCKEA+ + + GKV IID I+ + + + + +L D+
Sbjct: 254 YILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDXVIDKKKDENQVTQIKLLXDVNXAC 313
Query: 240 LFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
L GKER+ ++WKKLF+ AGF HYKI+P+ G SLIE YP
Sbjct: 314 L-NGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIYP 352
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 239 bits (609), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/292 (46%), Positives = 188/292 (64%), Gaps = 15/292 (5%)
Query: 1 MRILVHSGFFAQQ----------KDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTA 50
+R+L H+GFFA+ ++ Y LTP S+LL+ P + V P
Sbjct: 69 LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDM 128
Query: 51 FHCLGTWLQND-DPSLFETAHGKKVWDRVA--DEPKFKSLFYDLMITDSELIAGIVIKDC 107
+ W D + +LFE A G+ WD + E S+F D M +DS + +V+++
Sbjct: 129 WSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQEN 187
Query: 108 KEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMF 167
K VFEGL+SLVDV GGTG + + I FP +KCTVFD P VV NL G N+NL+F+GG+MF
Sbjct: 188 KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNFVGGDMF 246
Query: 168 EAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227
++IP A+AVLLKW+LH+WNDE+S+K+LK KEAI K + GKVIIID++I+ S D+
Sbjct: 247 KSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT 306
Query: 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
E QL +D++M+++F GKER+ +W+KL AGFS YKITP+ G +SLIE YP
Sbjct: 307 ELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/292 (46%), Positives = 188/292 (64%), Gaps = 15/292 (5%)
Query: 1 MRILVHSGFFAQQ----------KDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTA 50
+R+L H+GFFA+ ++ Y LTP S+LL+ P + V P
Sbjct: 68 LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDM 127
Query: 51 FHCLGTWLQND-DPSLFETAHGKKVWDRVA--DEPKFKSLFYDLMITDSELIAGIVIKDC 107
+ W D + +LFE A G+ WD + E S+F D M +DS + +V+++
Sbjct: 128 WSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQEN 186
Query: 108 KEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMF 167
K VFEGL+SLVDV GGTG + + I FP +KCTVFD P VV NL G N+NL+F+GG+MF
Sbjct: 187 KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNFVGGDMF 245
Query: 168 EAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227
++IP A+AVLLKW+LH+WNDE+S+K+LK KEAI K + GKVIIID++I+ S D+
Sbjct: 246 KSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT 305
Query: 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
E QL +D++M+++F GKER+ +W+KL AGFS YKITP+ G +SLIE YP
Sbjct: 306 ELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 357
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 238 bits (608), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/292 (46%), Positives = 188/292 (64%), Gaps = 15/292 (5%)
Query: 1 MRILVHSGFFAQQ----------KDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTA 50
+R+L H+GFFA+ ++ Y LTP S+LL+ P + V P
Sbjct: 65 LRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDM 124
Query: 51 FHCLGTWLQND-DPSLFETAHGKKVWDRVA--DEPKFKSLFYDLMITDSELIAGIVIKDC 107
+ W D + +LFE A G+ WD + E S+F D M +DS + +V+++
Sbjct: 125 WSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-LVLQEN 183
Query: 108 KEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMF 167
K VFEGL+SLVDV GGTG + + I FP +KCTVFD P VV NL G N+NL+F+GG+MF
Sbjct: 184 KRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTG-NENLNFVGGDMF 242
Query: 168 EAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227
++IP A+AVLLKW+LH+WNDE+S+K+LK KEAI K + GKVIIID++I+ S D+
Sbjct: 243 KSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLT 302
Query: 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
E QL +D++M+++F GKER+ +W+KL AGFS YKITP+ G +SLIE YP
Sbjct: 303 ELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 354
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 116/201 (57%), Gaps = 6/201 (2%)
Query: 66 FETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTG 125
F A+G ++ +P+F +F M +D I I + FEGLKSLVDV GGTG
Sbjct: 154 FNKAYGMTAFEYHGTDPRFNKVFNKGM-SDHSTITMKKILETYTGFEGLKSLVDVGGGTG 212
Query: 126 IMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNW 185
+ I + +P IK FDLPHV+++ + ++ +GG+MF +IP+A+AV +KWI H+W
Sbjct: 213 AVINTIVSKYPTIKGINFDLPHVIEDAP-SYPGVEHVGGDMFVSIPKADAVFMKWICHDW 271
Query: 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF-RGK 244
+DE +K LK C EA+P + GKVI+ + + + + + D++M++ GK
Sbjct: 272 SDEHCLKFLKNCYEALP---DNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGK 328
Query: 245 ERSVDDWKKLFLAAGFSHYKI 265
ER+ +++ L AGF +K+
Sbjct: 329 ERTQKEFEDLAKGAGFQGFKV 349
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 135/254 (53%), Gaps = 16/254 (6%)
Query: 18 YFLTPASRLLLKDT-PLKAAPFVDLVADP-LYTTAFHCLGTWLQNDDPSLFETAHGKKVW 75
Y L P + L K+ + APF+ L D L F+ L+ P F A+G ++
Sbjct: 109 YGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIP--FNKAYGMNIF 166
Query: 76 DRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEV---FEGLKSLVDVAGGTGIMARAIA 132
D + + +F M ++S I +K E+ FEGL ++VDV GGTG +A I
Sbjct: 167 DYHGTDHRINKVFNKGMSSNST----ITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIV 222
Query: 133 TAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVK 192
+P I FDLPHV+ + + ++ LGG+MF+ +P+ +A+ +KWI H+W+DE +K
Sbjct: 223 AKYPSINAINFDLPHVIQDAPAFS-GVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLK 281
Query: 193 LLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-GKERSVDDW 251
LLK C A+P + GKVI+ + + + + + D LM++ GKER+ ++
Sbjct: 282 LLKNCYAALP---DHGKVIVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF 338
Query: 252 KKLFLAAGFSHYKI 265
+ L +A+GF +K+
Sbjct: 339 QALAMASGFRGFKV 352
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 109/202 (53%), Gaps = 6/202 (2%)
Query: 66 FETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTG 125
F A+G ++ +P+F +F + M S +I ++ + FEGL +LVDV GG G
Sbjct: 155 FNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLL-ELYHGFEGLGTLVDVGGGVG 213
Query: 126 IMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNW 185
AIA +P IK FDLPHV+ + +GG+MF+ +P + +L+KWILH+W
Sbjct: 214 ATVAAIAAHYPTIKGVNFDLPHVISEAP-QFPGVTHVGGDMFKEVPSGDTILMKWILHDW 272
Query: 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF-RGK 244
+D+ LLK C +A+P+ GKV+++ + + S + D++M++ G+
Sbjct: 273 SDQHCATLLKNCYDALPAH---GKVVLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGR 329
Query: 245 ERSVDDWKKLFLAAGFSHYKIT 266
ER +++ L AGF+ K T
Sbjct: 330 ERYEREFQALARGAGFTGVKST 351
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 119/233 (51%), Gaps = 27/233 (11%)
Query: 49 TAFHCLGTWLQ----------NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSEL 98
T F C LQ ++D LF+ HG ++ + + K +F M+
Sbjct: 136 TTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVD---- 191
Query: 99 IAGIVIKDCKEV---FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDN---L 152
+ +K E+ FEG+ +LVDV GG+G I + +P IK FDLP V++N L
Sbjct: 192 VCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPL 251
Query: 153 QGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212
G ++ +GG+MF ++PQ +A++LK + HNW+DE+ ++ L C +A+ GKVII
Sbjct: 252 SG----IEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVII 304
Query: 213 IDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265
++ + + E + D LM G+ER+ ++KL +GFS +++
Sbjct: 305 VEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQV 357
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 29/234 (12%)
Query: 49 TAFHCLGTWLQ----------NDDPSLFETAHGKKVWDRVADEPKFKSLF----YDLMIT 94
T F C LQ ++D LF+ HG ++ + K +F D+ T
Sbjct: 136 TTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHGVTKYEFXGKDKKXNQIFNKSXVDVCAT 195
Query: 95 DSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDN--- 151
+ + I FEG+ +LVDV GG+G I + +P IK FDLP V++N
Sbjct: 196 EXKRXLEIYTG-----FEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPP 250
Query: 152 LQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVI 211
L G ++ +GG+ F ++PQ +A +LK + HNW+DE+ ++ L C +A+ GKVI
Sbjct: 251 LSG----IEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEFLSNCHKAL---SPNGKVI 303
Query: 212 IIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265
I++ + + E + D L G+ER+ ++KL +GFS +++
Sbjct: 304 IVEFILPEEPNTSEESKLVSTLDNLXFITVGGRERTEKQYEKLSKLSGFSKFQV 357
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/274 (24%), Positives = 118/274 (43%), Gaps = 18/274 (6%)
Query: 12 QQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHG 71
++ D + LT L D+P+ A + D + T H + + L + P+ F G
Sbjct: 86 RESDGRFALTDKGAALRSDSPVPARAGILXFTDTXFWTXSHRVASALGPERPA-FADIFG 144
Query: 72 KKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAI 131
+ + + ++L+Y+ T S I+ + F ++ DV GG G +
Sbjct: 145 SSLDAYFDGDAEVEALYYEGXETVSAAEHLILARAGD--FPATGTVADVGGGRGGFLLTV 202
Query: 132 ATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLG------GNMFEAIPQANAVLLKWILHNW 185
P ++ + D VV + D D G G+ +P A+ +LK ILHNW
Sbjct: 203 LREHPGLQGVLLDRAEVVARHR--LDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNW 260
Query: 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKE 245
DE+SV++L C+ P+ G+V++ID + + +S E D ++ G+E
Sbjct: 261 GDEDSVRILTNCRRVXPAH---GRVLVIDAVVPEGNDAHQSKEX----DFXXLAARTGQE 313
Query: 246 RSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279
R+ + + LF AAG ++ V S+ P
Sbjct: 314 RTAAELEPLFTAAGLRLDRVVGTSSVXSIAVGVP 347
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/268 (27%), Positives = 123/268 (45%), Gaps = 19/268 (7%)
Query: 8 GFFAQQKDDEYFLTPA-SRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLF 66
G F D+ F A S +LL D A A P + A+ L ++ + S F
Sbjct: 99 GVFDDLGHDDLFAQNALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEAS-F 157
Query: 67 ETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGI 126
+ A+G W ++PK + LF + S AG V F G + VD+ GG G
Sbjct: 158 DVANGTSFWQLTHEDPKARELFNRAXGSVSLTEAGQVAAAYD--FSGAATAVDIGGGRGS 215
Query: 127 MARAIATAFPDIKCTVFDLPHVVDNL------QGTNDNLDFLGGNMFEAIPQ-ANAVLLK 179
+ A+ AFP ++ T+ + P V + +G D + L G+ FE IP A+ L+K
Sbjct: 216 LXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIK 275
Query: 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239
+LH+W+D++ V++L++ A ++++ID I D+ + L D+L++
Sbjct: 276 HVLHDWDDDDVVRILRRIATAXKPDS---RLLVIDNLI-----DERPAASTLFVDLLLLV 327
Query: 240 LFRGKERSVDDWKKLFLAAGFSHYKITP 267
L G ERS ++ L +G + P
Sbjct: 328 LVGGAERSESEFAALLEKSGLRVERSLP 355
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 127/271 (46%), Gaps = 23/271 (8%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLV-ADPLYTTAFHCLGTWLQ 59
+R LV G + E+ T LL D P + DL A +F L ++
Sbjct: 73 IRHLVAIGLLEEDAPGEFVPTEVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIR 132
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELI--AGIVIKDCKEVFEGLKSL 117
P+ +E+ +GK ++ +A P ++ F L+ D ++ A D V + +
Sbjct: 133 TGRPT-YESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNV----RHV 187
Query: 118 VDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNL------QGTNDNLDFLGGNMFEAIP 171
+DV GG G A AIA P + TV ++ VD +G +D +D + G+ FE +P
Sbjct: 188 LDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLP 247
Query: 172 Q-ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ 230
+ A+A++L ++L NW D ++V++L +C EA+ + GG+++I E + S Q
Sbjct: 248 RKADAIILSFVLLNWPDHDAVRILTRCAEAL---EPGGRILI----HERDDLHENSFNEQ 300
Query: 231 LC-FDILMVSLFRGKERSVDDWKKLFLAAGF 260
D+ M+ G R+ + W L +AG
Sbjct: 301 FTELDLRMLVFLGGALRTREKWDGLAASAGL 331
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 17/220 (7%)
Query: 50 AFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKE 109
AF L ++ P+ + +G+ W+ ++ + F LM D +L A D +
Sbjct: 122 AFTGLLDVVRTGRPA-YAGRYGRPFWEDLSADVALADSFDALMSCDEDL-AYEAPADAYD 179
Query: 110 VFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLG 163
+ ++ ++DV GG G M AIA P ++ T+ +L + + G D +
Sbjct: 180 -WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAE 238
Query: 164 GNMFEAIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA-IENQS 221
G+ F+ +P A+ VLL ++L NW+DE+++ +L+ C A+ + GG+++++D A +E
Sbjct: 239 GDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRAL---EPGGRLLVLDRADVEGDG 295
Query: 222 QDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261
D+ D+ M++ G+ R+ D+ L +AG +
Sbjct: 296 ADR---FFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLA 332
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/281 (27%), Positives = 122/281 (43%), Gaps = 31/281 (11%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGT---- 56
MR+LV F D Y TP S LL +D F D+V Y FH T
Sbjct: 62 MRLLVAFEIFQGDTRDGYANTPTSHLL-RDVE---GSFRDMVL--FYGEEFHAAWTPACE 115
Query: 57 WLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKS 116
L + P FE A G+ + + P F L+ + +A I + F G +S
Sbjct: 116 ALLSGTPG-FELAFGEDFYSYLKRCPDAGRRF--LLAMKASNLAFHEIPRLLD-FRG-RS 170
Query: 117 LVDVAGGTGIMARAIATAFPDIKCTVFD----LPHVVDNLQG--TNDNLDFLGGNMFEAI 170
VDV GG+G + +AI A P + + D L DNL + + +GG+M + +
Sbjct: 171 FVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEV 230
Query: 171 P-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET 229
P + LL I+ + ++ S++LL C+EA+ G+V++I+ I E
Sbjct: 231 PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGD---GRVVVIERTISAS----EPSPM 283
Query: 230 QLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT--PM 268
+ +D+ + G+ R+ ++ L GF+ +I PM
Sbjct: 284 SVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPM 324
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 83/139 (59%), Gaps = 12/139 (8%)
Query: 88 FYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPH 147
F ++ ++++ +++++ K +G+K ++DV GG G ++ A+ FP++ T+ +LP
Sbjct: 167 FEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPG 224
Query: 148 VVDNL------QGTNDNLDFLGGNMF-EAIPQANAVLLKWILHNWNDEESVKLLKKCKEA 200
+D + +G D + + +++ E+ P+A+AVL IL++ N++ S + CK+A
Sbjct: 225 AIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIM---CKKA 281
Query: 201 IPSKDEGGKVIIIDMAIEN 219
+ GG+++I+DM I++
Sbjct: 282 FDAMRSGGRLLILDMVIDD 300
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 79/155 (50%), Gaps = 12/155 (7%)
Query: 117 LVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQ-----GTNDNLDFLGGNMF-EAI 170
+ D+ GG G +A+ + +P K TVFD+P VV + + +DF G+ F + +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 171 PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ 230
P+A+ +L +LH+W D + LL++ GG +++I+ ++ + + TQ
Sbjct: 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVIESLLDEDR--RGPLLTQ 297
Query: 231 LCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265
L + + M+ G+ER+ + L +AGF ++
Sbjct: 298 L-YSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQF 331
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 123/277 (44%), Gaps = 23/277 (8%)
Query: 1 MRILVHSGFFAQQKDDEYFLTPASRLLLKDTPLKAAPFVDL-VADPLYTTAFHCLGTWLQ 59
+R LV G F + Y LT L D ++D+ A F L ++
Sbjct: 59 LRHLVAVGLFTRDGQGVYGLTEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIR 118
Query: 60 NDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSEL-IAGIVIKDCKEVFEGLKSLV 118
P+ + +G W+ + +P + F LM EL GI K + L +V
Sbjct: 119 TGQPA-YPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIA---AKYDWAALGHVV 174
Query: 119 DVAGGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQ----GTNDNLDFLGGNMFEAIPQ 172
DV GG+G + A+ TA D+ TV DL P + + G + + G+ F+ +P
Sbjct: 175 DVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPA 234
Query: 173 -ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQL 231
A +L +LH+W+D +V +L++C EA S GG V++I+ A+ M
Sbjct: 235 GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVIE-AVAGDEHAGTGM---- 286
Query: 232 CFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268
D+ M++ F GKERS+ + +L AG + P+
Sbjct: 287 --DLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI 321
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 99/204 (48%), Gaps = 16/204 (7%)
Query: 66 FETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTG 125
+ +G+ W+ ++ + F L D +L A D + + ++ ++DV GG G
Sbjct: 137 YAGRYGRPFWEDLSADVALADSFDALXSCDEDL-AYEAPADAYD-WSAVRHVLDVGGGNG 194
Query: 126 IMARAIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEAIP-QANAVLL 178
AIA P ++ T+ +L + + G D + G+ F+ +P A+ VLL
Sbjct: 195 GXLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 254
Query: 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA-IENQSQDKESMETQLCFDILM 237
++L NW+DE+++ +L+ C A+ + GG+++++D A +E D+ D+
Sbjct: 255 SFVLLNWSDEDALTILRGCVRAL---EPGGRLLVLDRADVEGDGADR---FFSTLLDLRX 308
Query: 238 VSLFRGKERSVDDWKKLFLAAGFS 261
++ G+ R+ D+ L +AG +
Sbjct: 309 LTFXGGRVRTRDEVVDLAGSAGLA 332
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 21/170 (12%)
Query: 54 LGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEG 113
LG L+++ P F+ R A + + + F D + S+ +V + VF
Sbjct: 128 LGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAXVRLSQPXVDVVSE--LGVFAR 179
Query: 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGT------NDNLDFLGGNMF 167
++++D+AGG G + P + ++DLP D + T ++F N+
Sbjct: 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLL 239
Query: 168 EAI----PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213
+A A+ V L LH ++ E+ +++ + GG ++I+
Sbjct: 240 DARNFEGGAADVVXLNDCLHYFDAREAREVIGHAAGLVKP---GGALLIL 286
>pdb|3DP7|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
pdb|3DP7|B Chain B, Crystal Structure Of Sam-Dependent Methyltransferase From
Bacteroides Vulgatus Atcc 8482
Length = 363
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 93/227 (40%), Gaps = 24/227 (10%)
Query: 14 KDDEYFLTPASRLLLKDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKK 73
++D Y L A LL D + ++ D Y FH L L
Sbjct: 83 EEDRYVLAKAGWFLLNDKMARVN--MEFNHDVNYQGLFHLEEALLNGRPEGLKVFGEWPT 140
Query: 74 VWDRVADEPKF--KSLF-YDLMITDSELIAGIVIKDCKEVFEGL-KSLVDVAGGTGIMAR 129
+++ ++ P+ KS F +D +D + I VF K L+D+ G TG A
Sbjct: 141 IYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEI-----VFSHHPKRLLDIGGNTGKWAT 195
Query: 130 AIATAFPDIKCTVFDLPHVVDNLQ------GTNDNLDFLGGNMFEA---IPQA-NAVLLK 179
+++ T+ DLP ++ ++ ++ + G N+ + P +AV +
Sbjct: 196 QCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMS 255
Query: 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKES 226
L +++EE + +L + ++I KD KV I++ + Q + S
Sbjct: 256 QFLDCFSEEEVISILTRVAQSI-GKDS--KVYIMETLWDRQRYETAS 299
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 88 FYD-----LMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA 134
FYD L ITD ++I +++K+C VF + G G M AI+ A
Sbjct: 53 FYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF----GPVGFMKSAISIA 100
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 88 FYD-----LMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA 134
FYD L ITD ++I +++K+C VF + G G M AI+ A
Sbjct: 54 FYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF----GPVGFMKSAISIA 101
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 88 FYD-----LMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATA 134
FYD L ITD ++I +++K+C VF + G G M AI+ A
Sbjct: 52 FYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPF----GPVGFMKSAISIA 99
>pdb|1FN9|A Chain A, Crystal Structure Of The Reovirus Outer Capsid Protein
Sigma 3
pdb|1FN9|B Chain B, Crystal Structure Of The Reovirus Outer Capsid Protein
Sigma 3
Length = 365
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 56 TWLQNDDPSLFETAHGKKVWD---RVADEPKFKSLFY----DLMITDSELIAGIVIKDCK 108
WLQ D S+F + H W +V D+ K Y +LMI S+LI +++D
Sbjct: 132 NWLQVDPNSMFRSIHSS--WTDPLQVVDDLDTKLDQYWTALNLMIDSSDLIPNFMMRDPS 189
Query: 109 EVFEGLK 115
F G+K
Sbjct: 190 HAFNGVK 196
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 95 DSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145
D+E++ I+ K G + ++DV G+G +A +IA A P + T DL
Sbjct: 13 DTEVLVEEAIRFLKRXPSGTR-VIDVGTGSGCIAVSIALACPGVSVTAVDL 62
>pdb|1XDZ|A Chain A, Crystal Structure Of Gram_positive Bacillus Subtilis
Glucose Inhibited Division Protein B (Gidb), Structural
Genomics, Mcsg
Length = 240
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 16/74 (21%)
Query: 87 LFYDLMITDSELIAGIVIKDCKEV----------------FEGLKSLVDVAGGTGIMARA 130
L+YD+++ +E I I + KEV F + ++ DV G G +
Sbjct: 28 LYYDMLVEWNEKINLTSITEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLP 87
Query: 131 IATAFPDIKCTVFD 144
I FP + T+ D
Sbjct: 88 IKICFPHLHVTIVD 101
>pdb|2QZS|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsb)
pdb|2R4T|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsc)
pdb|2R4U|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Glucose(Wtgsd)
pdb|3GUH|A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With
Adp And Dgm
Length = 485
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 103 VIKDCKEVFEGLKS--LVDVAGGT-------GIMARAIATAFPDIKCTVFD 144
V+ C E+F LK+ L DV G G+ AR + AFPDI+ V D
Sbjct: 3 VLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTD 53
>pdb|3COP|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Acceptor Analogue Heppso
pdb|3CX4|A Chain A, Crystal Structure Of E.Coli Gs Mutant E377a In Complex
With Adp And Oligosaccharides
Length = 485
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 103 VIKDCKEVFEGLKS--LVDVAGGT-------GIMARAIATAFPDIKCTVFD 144
V+ C E+F LK+ L DV G G+ AR + AFPDI+ V D
Sbjct: 3 VLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAFPDIRRGVTD 53
>pdb|1BG3|A Chain A, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
pdb|1BG3|B Chain B, Rat Brain Hexokinase Type I Complex With Glucose And
Inhibitor Glucose-6-Phosphate
Length = 918
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Query: 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKE 245
N + +VK+L +IP E G + +D+ N F +L+V + GK+
Sbjct: 504 NSKATVKMLPSFVRSIPDGTEHGDFLALDLGGTN-------------FRVLLVKIRSGKK 550
Query: 246 RSVDDWKKLF 255
R+V+ K++
Sbjct: 551 RTVEMHNKIY 560
>pdb|1JMU|G Chain G, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|H Chain H, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
pdb|1JMU|I Chain I, Crystal Structure Of The Reovirus Mu1SIGMA3 COMPLEX
Length = 366
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 56 TWLQNDDPSLFETAHGKKVWD---RVADEPKFKSLFY----DLMITDSELIAGIVIKDCK 108
WLQ D S+F + H W +V D+ K Y +LMI S+L+ +++D
Sbjct: 133 NWLQVDPNSMFRSIHSS--WTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPS 190
Query: 109 EVFEGLK 115
F G++
Sbjct: 191 HAFNGVR 197
>pdb|2CSE|S Chain S, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|D Chain D, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|E Chain E, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|F Chain F, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|M Chain M, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|N Chain N, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|O Chain O, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|G Chain G, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|H Chain H, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
pdb|2CSE|I Chain I, Features Of Reovirus Outer-Capsid Protein Mu1 Revealed By
Electron And Image Reconstruction Of The Virion At 7.0-A
Resolution
Length = 365
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 56 TWLQNDDPSLFETAHGKKVWD---RVADEPKFKSLFY----DLMITDSELIAGIVIKDCK 108
WLQ D S+F + H W +V D+ K Y +LMI S+L+ +++D
Sbjct: 132 NWLQVDPNSMFRSIHSS--WTDPLQVVDDLDTKLDQYWTALNLMIDSSDLVPNFMMRDPS 189
Query: 109 EVFEGLK 115
F G++
Sbjct: 190 HAFNGVR 196
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 201
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 10/97 (10%)
Query: 104 IKDCKEVFEGLKSLVDV---AGGTGIMARAIATAFPDIKCTVFD---LPHVVDNL-QGTN 156
+K C+E+ E L S V+V ++A + +I ++F H V + QG +
Sbjct: 54 VKSCRELKEKLNSGVEVHLDCESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMDQGND 113
Query: 157 DNLDFLGGNMFEAIPQANAVLLKW---ILHNWNDEES 190
+ + + +P+AN VLL++ +LHN S
Sbjct: 114 EEKINTVQRLLDQLPRANVVLLRYLFGVLHNIEQHSS 150
>pdb|3L9Z|A Chain A, Crystal Structure Of Uree From Helicobacter Pylori (Apo
Form)
pdb|3LA0|A Chain A, Crystal Structure Of Uree From Helicobacter Pylori (Metal
Of Unknown Identity Bound)
pdb|3LA0|B Chain B, Crystal Structure Of Uree From Helicobacter Pylori (Metal
Of Unknown Identity Bound)
pdb|3LA0|C Chain C, Crystal Structure Of Uree From Helicobacter Pylori (Metal
Of Unknown Identity Bound)
pdb|3LA0|D Chain D, Crystal Structure Of Uree From Helicobacter Pylori (Metal
Of Unknown Identity Bound)
pdb|3NXZ|A Chain A, Crystal Structure Of Uree From Helicobacter Pylori (Cu2+
Bound Form)
pdb|3NXZ|B Chain B, Crystal Structure Of Uree From Helicobacter Pylori (Cu2+
Bound Form)
pdb|3NXZ|C Chain C, Crystal Structure Of Uree From Helicobacter Pylori (Cu2+
Bound Form)
pdb|3NXZ|D Chain D, Crystal Structure Of Uree From Helicobacter Pylori (Cu2+
Bound Form)
pdb|3NY0|A Chain A, Crystal Structure Of Uree From Helicobacter Pylori (Ni2+
Bound Form)
pdb|3NY0|B Chain B, Crystal Structure Of Uree From Helicobacter Pylori (Ni2+
Bound Form)
pdb|3NY0|C Chain C, Crystal Structure Of Uree From Helicobacter Pylori (Ni2+
Bound Form)
pdb|3NY0|D Chain D, Crystal Structure Of Uree From Helicobacter Pylori (Ni2+
Bound Form)
Length = 170
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 44 DPLYTTAFHCLGTWLQNDDP-SLFETAHGKKVWDRVADEPKFKSLFYDLMITDSELIAGI 102
+PL + H W + + F+T GK + R+ D PK D++ + + I +
Sbjct: 14 NPLDFSVDHVDLEWFETRKKIARFKTRQGKDIAIRLKDAPKLGLSQGDILFKEEKEIIAV 73
Query: 103 VIKDCKEVFEGLKSLVDVA 121
I D + + KS+ +VA
Sbjct: 74 NILDSEVIHIQAKSVAEVA 92
>pdb|3PZT|A Chain A, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZT|B Chain B, Structure Of The Endo-1,4-Beta-Glucanase From Bacillus
Subtilis 168 With Manganese(Ii) Ion
pdb|3PZU|A Chain A, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZU|B Chain B, P212121 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|A Chain A, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|B Chain B, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|C Chain C, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
pdb|3PZV|D Chain D, C2 Crystal Form Of The Endo-1,4-Beta-Glucanase From
Bacillus Subtilis 168
Length = 327
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 18/80 (22%)
Query: 178 LKWILHNWN----------------DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 221
LKW+ +W D SVK K KEA+ + E G +IID I N
Sbjct: 74 LKWLRDDWGITVFRAAMYTADGGYIDNPSVK--NKVKEAVEAAKELGIYVIIDWHILNDG 131
Query: 222 QDKESMETQLCFDILMVSLF 241
++ E F M SL+
Sbjct: 132 NPNQNKEKAKEFFKEMSSLY 151
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,493,339
Number of Sequences: 62578
Number of extensions: 346934
Number of successful extensions: 773
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 704
Number of HSP's gapped (non-prelim): 41
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)