Query 023625
Match_columns 279
No_of_seqs 224 out of 2321
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 05:26:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023625.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023625hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 100.0 1.4E-45 3E-50 306.8 18.7 234 16-256 4-241 (241)
2 KOG3178 Hydroxyindole-O-methyl 100.0 4.6E-40 1E-44 274.9 17.5 274 1-279 64-342 (342)
3 TIGR02716 C20_methyl_CrtF C-20 100.0 1E-32 2.2E-37 237.1 20.4 249 1-266 44-305 (306)
4 TIGR00740 methyltransferase, p 99.8 7.4E-19 1.6E-23 146.0 11.6 149 112-268 52-228 (239)
5 COG2226 UbiE Methylase involve 99.8 1.2E-17 2.6E-22 135.9 16.7 159 112-278 50-236 (238)
6 PTZ00098 phosphoethanolamine N 99.8 2.1E-17 4.7E-22 138.8 17.3 156 101-269 42-204 (263)
7 PLN02233 ubiquinone biosynthes 99.8 3E-17 6.6E-22 137.7 17.6 161 111-278 71-260 (261)
8 PRK15451 tRNA cmo(5)U34 methyl 99.8 2.2E-17 4.7E-22 137.7 15.4 150 112-265 55-228 (247)
9 PF01209 Ubie_methyltran: ubiE 99.8 1.4E-18 3E-23 142.7 7.3 161 111-278 45-232 (233)
10 TIGR02752 MenG_heptapren 2-hep 99.7 5.4E-17 1.2E-21 134.2 15.7 162 111-279 43-231 (231)
11 PRK14103 trans-aconitate 2-met 99.7 3.5E-16 7.7E-21 131.2 16.3 155 101-265 19-182 (255)
12 PLN02244 tocopherol O-methyltr 99.7 5.2E-16 1.1E-20 135.0 17.3 152 112-269 117-280 (340)
13 PLN02490 MPBQ/MSBQ methyltrans 99.7 3.4E-16 7.4E-21 134.6 13.8 141 112-269 112-258 (340)
14 PLN02336 phosphoethanolamine N 99.7 1.3E-15 2.9E-20 138.8 16.6 150 103-268 258-415 (475)
15 PF12847 Methyltransf_18: Meth 99.7 4E-16 8.6E-21 114.1 10.2 99 113-214 1-111 (112)
16 smart00828 PKS_MT Methyltransf 99.7 1.5E-15 3.2E-20 125.0 14.7 137 115-269 1-146 (224)
17 PRK00216 ubiE ubiquinone/menaq 99.7 4.8E-15 1E-19 123.0 17.5 160 112-279 50-238 (239)
18 PRK15068 tRNA mo(5)U34 methylt 99.7 3E-15 6.4E-20 129.1 16.5 146 113-269 122-276 (322)
19 TIGR01934 MenG_MenH_UbiE ubiqu 99.7 4.1E-15 8.9E-20 122.1 16.6 160 112-279 38-223 (223)
20 KOG1540 Ubiquinone biosynthesi 99.7 4.8E-15 1E-19 118.9 15.7 147 112-264 99-278 (296)
21 TIGR00452 methyltransferase, p 99.7 4E-15 8.6E-20 127.0 16.1 145 112-269 120-275 (314)
22 PRK11873 arsM arsenite S-adeno 99.7 3.4E-15 7.3E-20 126.5 15.5 146 111-267 75-230 (272)
23 PRK11207 tellurite resistance 99.6 6.9E-15 1.5E-19 118.4 14.8 142 101-266 20-169 (197)
24 PRK06922 hypothetical protein; 99.6 5.2E-15 1.1E-19 134.9 13.9 144 72-220 377-543 (677)
25 PRK08317 hypothetical protein; 99.6 1.5E-14 3.3E-19 119.9 15.5 150 111-267 17-176 (241)
26 PRK11036 putative S-adenosyl-L 99.6 8.6E-15 1.9E-19 122.8 14.0 154 112-272 43-212 (255)
27 PLN02396 hexaprenyldihydroxybe 99.6 4.4E-15 9.6E-20 127.3 11.7 143 113-267 131-289 (322)
28 PRK01683 trans-aconitate 2-met 99.6 3.8E-14 8.3E-19 119.1 16.5 106 101-213 21-129 (258)
29 PF13489 Methyltransf_23: Meth 99.6 9.9E-15 2.1E-19 113.6 11.9 135 111-264 20-160 (161)
30 PF13847 Methyltransf_31: Meth 99.6 2.5E-15 5.4E-20 116.1 7.9 136 113-259 3-152 (152)
31 TIGR02021 BchM-ChlM magnesium 99.6 3.9E-14 8.4E-19 116.1 15.2 181 76-269 18-208 (219)
32 PF02353 CMAS: Mycolic acid cy 99.6 9.8E-15 2.1E-19 122.6 11.8 160 101-269 52-219 (273)
33 TIGR00477 tehB tellurite resis 99.6 4.5E-14 9.8E-19 113.5 13.9 141 102-266 21-168 (195)
34 COG2230 Cfa Cyclopropane fatty 99.6 6.4E-14 1.4E-18 116.2 14.3 157 101-269 62-225 (283)
35 COG4106 Tam Trans-aconitate me 99.6 6.2E-14 1.4E-18 109.9 11.9 164 101-278 20-202 (257)
36 TIGR03587 Pse_Me-ase pseudamin 99.6 5.9E-14 1.3E-18 113.3 12.3 104 111-219 41-147 (204)
37 PRK06202 hypothetical protein; 99.6 7.1E-14 1.5E-18 115.6 12.9 145 112-269 59-224 (232)
38 PF06080 DUF938: Protein of un 99.5 3.3E-13 7.2E-18 106.7 15.4 163 111-279 22-204 (204)
39 PRK05785 hypothetical protein; 99.5 2.7E-13 5.8E-18 111.4 15.5 154 112-279 50-224 (226)
40 PF08241 Methyltransf_11: Meth 99.5 3.2E-14 6.9E-19 100.5 8.6 89 118-212 1-95 (95)
41 smart00138 MeTrc Methyltransfe 99.5 3.3E-13 7.1E-18 113.3 14.6 99 113-214 99-242 (264)
42 TIGR02072 BioC biotin biosynth 99.5 5.1E-13 1.1E-17 110.8 15.3 136 114-266 35-175 (240)
43 PF08242 Methyltransf_12: Meth 99.5 7.1E-15 1.5E-19 105.1 3.1 88 118-210 1-99 (99)
44 PRK07580 Mg-protoporphyrin IX 99.5 6.1E-13 1.3E-17 109.8 14.9 146 112-269 62-216 (230)
45 PRK08287 cobalt-precorrin-6Y C 99.5 5.9E-13 1.3E-17 106.4 14.3 120 111-266 29-155 (187)
46 PLN02336 phosphoethanolamine N 99.5 4.4E-13 9.6E-18 122.3 15.3 144 101-264 27-179 (475)
47 PRK12335 tellurite resistance 99.5 5.3E-13 1.1E-17 113.8 14.3 132 113-266 120-258 (287)
48 PRK10258 biotin biosynthesis p 99.5 7.1E-13 1.5E-17 111.0 14.7 147 101-262 32-182 (251)
49 TIGR00537 hemK_rel_arch HemK-r 99.5 1.6E-12 3.5E-17 103.2 15.4 133 113-278 19-176 (179)
50 PRK04266 fibrillarin; Provisio 99.5 3.2E-12 6.8E-17 104.6 16.7 140 111-278 70-224 (226)
51 TIGR03840 TMPT_Se_Te thiopurin 99.5 2E-12 4.3E-17 105.0 15.0 132 112-266 33-186 (213)
52 PF13649 Methyltransf_25: Meth 99.5 1.2E-13 2.6E-18 99.1 7.0 89 117-208 1-101 (101)
53 PF05891 Methyltransf_PK: AdoM 99.5 3.5E-13 7.5E-18 107.1 9.9 142 113-271 55-205 (218)
54 PF08003 Methyltransf_9: Prote 99.5 2E-12 4.3E-17 107.5 14.4 144 113-269 115-269 (315)
55 PRK11705 cyclopropane fatty ac 99.5 2.4E-12 5.3E-17 113.5 15.8 147 111-269 165-314 (383)
56 KOG1270 Methyltransferases [Co 99.5 3.4E-13 7.4E-18 109.0 9.0 142 114-267 90-249 (282)
57 COG2227 UbiG 2-polyprenyl-3-me 99.4 2.7E-13 5.9E-18 108.8 7.0 144 113-268 59-216 (243)
58 PLN02585 magnesium protoporphy 99.4 1.7E-12 3.8E-17 111.0 12.3 142 113-268 144-300 (315)
59 TIGR03438 probable methyltrans 99.4 6.1E-12 1.3E-16 107.8 15.5 98 112-212 62-175 (301)
60 PLN03075 nicotianamine synthas 99.4 1.6E-12 3.5E-17 109.2 11.2 98 112-213 122-232 (296)
61 PRK00107 gidB 16S rRNA methylt 99.4 2.4E-11 5.3E-16 96.5 16.6 118 112-267 44-169 (187)
62 KOG4300 Predicted methyltransf 99.4 3.1E-12 6.8E-17 99.7 10.6 150 112-270 75-235 (252)
63 PRK13255 thiopurine S-methyltr 99.4 1.3E-11 2.8E-16 100.6 14.0 132 112-266 36-189 (218)
64 TIGR00138 gidB 16S rRNA methyl 99.4 1.1E-11 2.3E-16 98.3 12.8 124 114-275 43-178 (181)
65 KOG2361 Predicted methyltransf 99.4 2.7E-12 5.7E-17 102.5 9.0 145 116-265 74-235 (264)
66 PRK15001 SAM-dependent 23S rib 99.4 9.7E-12 2.1E-16 108.7 12.3 108 102-214 219-340 (378)
67 PF05401 NodS: Nodulation prot 99.4 3E-12 6.6E-17 100.1 8.2 132 111-267 41-179 (201)
68 PF03848 TehB: Tellurite resis 99.3 1.1E-11 2.4E-16 97.9 10.9 109 102-217 21-136 (192)
69 TIGR02081 metW methionine bios 99.3 2.4E-11 5.3E-16 97.6 13.0 147 112-269 12-169 (194)
70 PRK00517 prmA ribosomal protei 99.3 7.5E-11 1.6E-15 98.6 16.2 126 112-279 118-250 (250)
71 PRK05134 bifunctional 3-demeth 99.3 3.1E-11 6.7E-16 99.9 13.6 144 112-267 47-205 (233)
72 PTZ00146 fibrillarin; Provisio 99.3 9.9E-11 2.1E-15 98.1 16.5 133 111-270 130-274 (293)
73 PF05175 MTS: Methyltransferas 99.3 2.1E-11 4.5E-16 95.9 10.3 99 113-214 31-140 (170)
74 TIGR03534 RF_mod_PrmC protein- 99.3 9E-11 1.9E-15 98.2 14.8 124 113-268 87-242 (251)
75 TIGR02469 CbiT precorrin-6Y C5 99.3 6.1E-11 1.3E-15 88.0 12.3 95 111-213 17-121 (124)
76 PRK09489 rsmC 16S ribosomal RN 99.3 3.6E-11 7.9E-16 104.4 12.4 100 113-215 196-304 (342)
77 PRK09328 N5-glutamine S-adenos 99.3 1.1E-10 2.4E-15 99.0 14.5 135 112-278 107-274 (275)
78 TIGR01983 UbiG ubiquinone bios 99.3 6.7E-11 1.4E-15 97.3 12.2 144 113-267 45-203 (224)
79 PRK13256 thiopurine S-methyltr 99.2 2.1E-10 4.6E-15 93.2 13.7 103 112-219 42-168 (226)
80 PRK14968 putative methyltransf 99.2 1E-09 2.3E-14 87.5 15.8 124 112-268 22-174 (188)
81 PHA03411 putative methyltransf 99.2 2.9E-10 6.3E-15 94.3 12.7 125 113-262 64-209 (279)
82 COG2813 RsmC 16S RNA G1207 met 99.2 8.8E-10 1.9E-14 92.0 15.5 110 101-215 148-267 (300)
83 PRK00121 trmB tRNA (guanine-N( 99.2 6.1E-11 1.3E-15 95.8 8.5 99 113-214 40-156 (202)
84 COG2242 CobL Precorrin-6B meth 99.2 8.1E-10 1.8E-14 85.8 14.0 95 111-214 32-135 (187)
85 PF12147 Methyltransf_20: Puta 99.2 7.9E-10 1.7E-14 91.3 13.8 155 112-278 134-310 (311)
86 PRK13944 protein-L-isoaspartat 99.2 3.2E-10 6.9E-15 91.9 11.2 98 103-213 64-172 (205)
87 PF05724 TPMT: Thiopurine S-me 99.2 5.1E-10 1.1E-14 91.1 11.9 132 111-266 35-189 (218)
88 PRK14966 unknown domain/N5-glu 99.2 2.1E-09 4.6E-14 94.4 16.5 135 112-278 250-417 (423)
89 PRK00377 cbiT cobalt-precorrin 99.1 1.1E-09 2.3E-14 88.4 13.3 94 111-212 38-143 (198)
90 PF06325 PrmA: Ribosomal prote 99.1 5.8E-10 1.2E-14 94.4 11.9 147 88-278 140-294 (295)
91 PRK11088 rrmA 23S rRNA methylt 99.1 1.8E-10 3.9E-15 97.5 8.5 90 113-214 85-181 (272)
92 PRK11805 N5-glutamine S-adenos 99.1 1.6E-09 3.5E-14 92.9 14.3 95 115-212 135-261 (307)
93 PF07021 MetW: Methionine bios 99.1 1.1E-09 2.3E-14 85.7 12.0 144 111-269 11-169 (193)
94 TIGR00536 hemK_fam HemK family 99.1 3.8E-09 8.2E-14 89.9 16.5 131 115-277 116-280 (284)
95 TIGR00406 prmA ribosomal prote 99.1 8.3E-10 1.8E-14 94.1 11.9 121 112-270 158-286 (288)
96 COG4123 Predicted O-methyltran 99.1 1.5E-09 3.3E-14 88.7 12.8 125 112-268 43-195 (248)
97 TIGR00091 tRNA (guanine-N(7)-) 99.1 4.3E-10 9.3E-15 90.4 9.4 98 113-214 16-132 (194)
98 TIGR03533 L3_gln_methyl protei 99.1 7.2E-10 1.6E-14 94.2 10.9 97 113-212 121-249 (284)
99 KOG1271 Methyltransferases [Ge 99.1 7.4E-10 1.6E-14 84.9 9.7 124 114-269 68-207 (227)
100 PRK11188 rrmJ 23S rRNA methylt 99.1 2.1E-09 4.6E-14 87.2 13.0 96 111-214 49-165 (209)
101 COG2264 PrmA Ribosomal protein 99.1 2E-09 4.2E-14 90.4 13.1 148 88-276 141-297 (300)
102 PRK13942 protein-L-isoaspartat 99.1 1.3E-09 2.8E-14 88.8 11.7 100 101-213 66-175 (212)
103 PLN02232 ubiquinone biosynthes 99.1 5E-10 1.1E-14 87.1 8.0 123 141-270 1-150 (160)
104 TIGR00080 pimt protein-L-isoas 99.1 1.7E-09 3.8E-14 88.3 11.1 99 102-213 68-176 (215)
105 PRK01544 bifunctional N5-gluta 99.1 3.7E-09 7.9E-14 96.7 14.3 132 114-277 139-304 (506)
106 PRK14967 putative methyltransf 99.1 6.1E-09 1.3E-13 85.6 14.2 103 111-217 34-162 (223)
107 PRK04457 spermidine synthase; 99.0 9.7E-10 2.1E-14 92.3 8.7 98 112-213 65-176 (262)
108 PRK07402 precorrin-6B methylas 99.0 3.3E-09 7.1E-14 85.4 11.2 96 111-215 38-143 (196)
109 cd02440 AdoMet_MTases S-adenos 99.0 3E-09 6.4E-14 75.5 9.6 93 116-213 1-103 (107)
110 PF05148 Methyltransf_8: Hypot 99.0 1.7E-08 3.6E-13 79.8 13.1 177 49-278 13-196 (219)
111 TIGR03704 PrmC_rel_meth putati 99.0 2.4E-08 5.2E-13 83.4 14.9 121 114-266 87-239 (251)
112 PF13659 Methyltransf_26: Meth 99.0 1.3E-09 2.8E-14 80.1 6.5 96 115-214 2-115 (117)
113 KOG2899 Predicted methyltransf 99.0 4.8E-09 1E-13 84.1 9.2 107 103-212 48-207 (288)
114 PRK14121 tRNA (guanine-N(7)-)- 98.9 7.9E-09 1.7E-13 90.2 11.2 99 113-215 122-236 (390)
115 TIGR00438 rrmJ cell division p 98.9 9.6E-09 2.1E-13 82.1 9.8 95 111-213 30-145 (188)
116 TIGR01177 conserved hypothetic 98.9 2.2E-08 4.7E-13 87.1 12.5 121 111-268 180-316 (329)
117 PRK00312 pcm protein-L-isoaspa 98.9 2.9E-08 6.3E-13 80.9 11.7 91 111-214 76-175 (212)
118 COG4976 Predicted methyltransf 98.9 8.7E-09 1.9E-13 82.0 7.4 137 112-268 124-266 (287)
119 COG2890 HemK Methylase of poly 98.8 1.1E-07 2.4E-12 80.5 14.4 130 116-277 113-274 (280)
120 PRK00811 spermidine synthase; 98.8 1.8E-08 3.9E-13 85.6 9.7 98 112-212 75-189 (283)
121 COG2519 GCD14 tRNA(1-methylade 98.8 6.7E-08 1.4E-12 78.6 11.9 118 88-217 67-198 (256)
122 PRK01581 speE spermidine synth 98.8 2.2E-08 4.9E-13 86.3 9.1 99 112-213 149-267 (374)
123 PRK10611 chemotaxis methyltran 98.8 1.5E-07 3.2E-12 79.5 13.7 96 114-212 116-260 (287)
124 PLN02781 Probable caffeoyl-CoA 98.8 1.7E-07 3.7E-12 77.4 13.1 99 111-217 66-181 (234)
125 PHA03412 putative methyltransf 98.8 1.7E-07 3.7E-12 76.2 12.2 89 114-202 50-154 (241)
126 KOG3010 Methyltransferase [Gen 98.8 2.9E-08 6.3E-13 79.7 7.6 95 113-215 33-138 (261)
127 PLN02672 methionine S-methyltr 98.8 7.3E-08 1.6E-12 94.0 11.7 66 114-179 119-210 (1082)
128 PRK13943 protein-L-isoaspartat 98.7 1.2E-07 2.5E-12 81.7 11.3 93 111-214 78-180 (322)
129 PLN02366 spermidine synthase 98.7 9.2E-08 2E-12 81.9 10.6 98 112-212 90-204 (308)
130 PRK03612 spermidine synthase; 98.7 1.4E-07 3E-12 86.8 12.1 98 112-213 296-414 (521)
131 KOG3045 Predicted RNA methylas 98.7 6.6E-07 1.4E-11 72.6 14.4 158 75-279 139-303 (325)
132 smart00650 rADc Ribosomal RNA 98.7 9.2E-08 2E-12 75.1 9.3 89 102-195 4-99 (169)
133 PF05219 DREV: DREV methyltran 98.7 3E-07 6.5E-12 75.2 11.5 140 113-270 94-243 (265)
134 TIGR00417 speE spermidine synt 98.7 1E-07 2.3E-12 80.5 9.3 98 113-213 72-185 (270)
135 PF01739 CheR: CheR methyltran 98.7 5.2E-08 1.1E-12 77.9 6.6 98 113-213 31-174 (196)
136 PF01135 PCMT: Protein-L-isoas 98.7 7.9E-08 1.7E-12 77.7 7.6 101 101-214 62-172 (209)
137 PF08704 GCD14: tRNA methyltra 98.7 2.6E-07 5.7E-12 76.3 10.7 103 103-217 32-149 (247)
138 COG1352 CheR Methylase of chem 98.6 5.7E-07 1.2E-11 75.1 12.4 97 113-212 96-239 (268)
139 COG2518 Pcm Protein-L-isoaspar 98.6 3.5E-07 7.6E-12 72.8 10.6 99 102-215 63-170 (209)
140 PRK10901 16S rRNA methyltransf 98.6 3.7E-07 8E-12 82.2 12.1 104 111-217 242-375 (427)
141 TIGR00563 rsmB ribosomal RNA s 98.6 3.8E-07 8.2E-12 82.1 11.0 106 111-219 236-373 (426)
142 PRK04148 hypothetical protein; 98.6 6E-07 1.3E-11 66.7 10.1 88 113-214 16-109 (134)
143 PRK14902 16S rRNA methyltransf 98.6 6.3E-07 1.4E-11 81.2 12.0 103 111-216 248-381 (444)
144 COG3963 Phospholipid N-methylt 98.6 8.8E-07 1.9E-11 67.3 10.3 116 96-216 33-158 (194)
145 PF04672 Methyltransf_19: S-ad 98.6 3.3E-07 7.2E-12 75.8 8.7 141 113-263 68-232 (267)
146 PRK14904 16S rRNA methyltransf 98.6 8E-07 1.7E-11 80.5 11.8 105 111-218 248-381 (445)
147 PF10294 Methyltransf_16: Puta 98.6 8.2E-07 1.8E-11 69.9 10.3 102 111-217 43-159 (173)
148 PF02390 Methyltransf_4: Putat 98.5 4.9E-07 1.1E-11 72.4 8.5 93 114-214 18-133 (195)
149 PF03291 Pox_MCEL: mRNA cappin 98.5 3.9E-07 8.4E-12 78.8 8.2 98 113-214 62-186 (331)
150 PLN02476 O-methyltransferase 98.5 1.1E-06 2.4E-11 73.7 9.7 99 111-217 116-231 (278)
151 PRK14901 16S rRNA methyltransf 98.5 1.7E-06 3.7E-11 78.1 11.5 104 111-217 250-387 (434)
152 PF01596 Methyltransf_3: O-met 98.5 1.8E-07 3.8E-12 75.4 4.4 97 111-215 43-156 (205)
153 PRK14896 ksgA 16S ribosomal RN 98.5 1.2E-06 2.5E-11 73.6 9.5 83 101-188 19-106 (258)
154 PRK14903 16S rRNA methyltransf 98.5 2.2E-06 4.9E-11 77.1 11.7 105 111-218 235-370 (431)
155 PRK00274 ksgA 16S ribosomal RN 98.4 8.5E-07 1.8E-11 75.0 8.4 82 101-187 32-119 (272)
156 TIGR00446 nop2p NOL1/NOP2/sun 98.4 2.4E-06 5.3E-11 71.9 10.8 104 111-217 69-202 (264)
157 TIGR00755 ksgA dimethyladenosi 98.4 1.6E-06 3.6E-11 72.6 9.6 90 101-198 19-115 (253)
158 COG2263 Predicted RNA methylas 98.4 8.3E-06 1.8E-10 63.5 12.2 66 113-179 45-115 (198)
159 PRK11727 23S rRNA mA1618 methy 98.4 2.8E-06 6E-11 73.0 10.5 144 113-268 114-293 (321)
160 PF11968 DUF3321: Putative met 98.4 6.4E-06 1.4E-10 65.8 11.5 122 114-271 52-185 (219)
161 COG4122 Predicted O-methyltran 98.4 2.3E-06 4.9E-11 69.2 9.0 100 111-219 57-170 (219)
162 KOG1541 Predicted protein carb 98.4 8.6E-07 1.9E-11 70.4 6.1 94 114-212 51-158 (270)
163 KOG1500 Protein arginine N-met 98.4 3.3E-06 7.1E-11 71.1 9.8 94 114-211 178-279 (517)
164 PLN02823 spermine synthase 98.3 3.3E-06 7.2E-11 73.1 9.2 97 112-212 102-218 (336)
165 PF08123 DOT1: Histone methyla 98.3 3.2E-06 6.9E-11 68.1 8.4 109 103-219 34-163 (205)
166 PRK13168 rumA 23S rRNA m(5)U19 98.3 3E-06 6.6E-11 76.7 9.0 91 111-212 295-398 (443)
167 PF05185 PRMT5: PRMT5 arginine 98.3 3E-06 6.5E-11 76.2 8.8 129 73-211 151-294 (448)
168 COG0421 SpeE Spermidine syntha 98.3 6.2E-06 1.3E-10 69.6 10.0 97 113-213 76-189 (282)
169 PTZ00338 dimethyladenosine tra 98.3 4.1E-06 8.8E-11 71.4 8.9 89 101-194 26-122 (294)
170 PLN02589 caffeoyl-CoA O-methyl 98.3 4.6E-06 1E-10 69.1 8.7 98 111-217 77-192 (247)
171 PF04816 DUF633: Family of unk 98.2 1.9E-05 4.2E-10 63.6 11.3 125 117-278 1-138 (205)
172 PRK10909 rsmD 16S rRNA m(2)G96 98.2 1E-05 2.2E-10 65.0 8.8 96 113-216 53-160 (199)
173 KOG1975 mRNA cap methyltransfe 98.2 1E-05 2.2E-10 67.9 8.8 98 111-212 115-235 (389)
174 KOG1499 Protein arginine N-met 98.2 1.2E-05 2.5E-10 68.6 9.1 95 113-211 60-164 (346)
175 COG0220 Predicted S-adenosylme 98.2 9.1E-06 2E-10 66.4 8.2 92 115-214 50-164 (227)
176 PRK11783 rlmL 23S rRNA m(2)G24 98.1 8.6E-06 1.9E-10 77.8 8.5 98 112-213 537-655 (702)
177 PF09243 Rsm22: Mitochondrial 98.1 1.6E-05 3.4E-10 67.3 9.2 100 114-218 34-143 (274)
178 PRK00536 speE spermidine synth 98.1 2E-05 4.3E-10 65.8 9.3 88 112-212 71-169 (262)
179 PRK15128 23S rRNA m(5)C1962 me 98.1 2.3E-05 4.9E-10 69.7 9.9 99 112-214 219-339 (396)
180 KOG1331 Predicted methyltransf 98.1 9.8E-06 2.1E-10 67.1 6.7 97 111-215 43-144 (293)
181 KOG1661 Protein-L-isoaspartate 98.1 1.6E-05 3.4E-10 62.8 7.2 100 103-213 72-192 (237)
182 PRK03522 rumB 23S rRNA methylu 98.1 2.1E-05 4.6E-10 68.0 8.8 65 113-179 173-247 (315)
183 TIGR03439 methyl_EasF probable 98.1 5.2E-05 1.1E-09 65.2 11.0 101 112-215 75-199 (319)
184 KOG2940 Predicted methyltransf 98.0 2.2E-05 4.8E-10 62.9 7.6 142 112-265 71-225 (325)
185 KOG0820 Ribosomal RNA adenine 98.0 2.1E-05 4.6E-10 64.6 7.7 76 99-178 46-129 (315)
186 PF01564 Spermine_synth: Sperm 98.0 1E-05 2.3E-10 67.3 5.9 100 112-214 75-191 (246)
187 TIGR00478 tly hemolysin TlyA f 98.0 3.2E-05 6.8E-10 63.4 7.8 126 113-269 75-219 (228)
188 TIGR00479 rumA 23S rRNA (uraci 98.0 4.3E-05 9.4E-10 69.1 9.4 91 111-212 290-394 (431)
189 KOG2904 Predicted methyltransf 97.9 4.2E-05 9.2E-10 62.9 7.9 67 113-179 148-229 (328)
190 KOG3191 Predicted N6-DNA-methy 97.9 0.001 2.2E-08 51.6 14.2 67 114-180 44-118 (209)
191 PF02527 GidB: rRNA small subu 97.9 4.8E-05 1.1E-09 60.2 7.1 89 116-214 51-148 (184)
192 PRK00050 16S rRNA m(4)C1402 me 97.9 3.1E-05 6.8E-10 65.7 6.4 77 100-178 8-96 (296)
193 TIGR00095 RNA methyltransferas 97.9 5.3E-05 1.1E-09 60.5 7.2 97 113-217 49-161 (189)
194 TIGR02085 meth_trns_rumB 23S r 97.8 6.5E-05 1.4E-09 66.5 8.0 65 113-179 233-307 (374)
195 PRK01544 bifunctional N5-gluta 97.8 0.00012 2.5E-09 67.4 8.9 98 113-214 347-462 (506)
196 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 6.6E-05 1.4E-09 62.3 5.3 137 113-267 56-239 (256)
197 PF03141 Methyltransf_29: Puta 97.7 1.9E-05 4.1E-10 70.4 1.9 98 113-218 117-223 (506)
198 COG0030 KsgA Dimethyladenosine 97.7 0.00034 7.4E-09 58.0 9.0 92 100-196 19-118 (259)
199 COG0293 FtsJ 23S rRNA methylas 97.7 0.00046 1E-08 55.1 9.3 107 100-215 33-160 (205)
200 PRK04338 N(2),N(2)-dimethylgua 97.6 0.00038 8.2E-09 61.7 8.6 91 114-213 58-157 (382)
201 COG0357 GidB Predicted S-adeno 97.5 0.00032 7E-09 56.6 6.7 90 114-212 68-166 (215)
202 COG5459 Predicted rRNA methyla 97.5 8E-05 1.7E-09 63.4 3.1 100 114-216 114-227 (484)
203 PF00398 RrnaAD: Ribosomal RNA 97.5 0.00049 1.1E-08 57.9 7.9 93 99-199 18-119 (262)
204 COG4262 Predicted spermidine s 97.5 0.00061 1.3E-08 58.5 8.1 93 112-213 288-406 (508)
205 COG3897 Predicted methyltransf 97.4 0.00041 9E-09 54.4 6.3 103 111-219 77-184 (218)
206 PF01728 FtsJ: FtsJ-like methy 97.4 0.00034 7.4E-09 55.4 5.9 103 102-213 11-138 (181)
207 PF02475 Met_10: Met-10+ like- 97.4 0.00025 5.4E-09 56.9 4.9 91 111-210 99-198 (200)
208 PF13679 Methyltransf_32: Meth 97.4 0.00044 9.6E-09 52.5 6.0 84 112-199 24-122 (141)
209 COG2384 Predicted SAM-dependen 97.4 0.0062 1.3E-07 48.9 12.5 86 113-202 16-111 (226)
210 PF09445 Methyltransf_15: RNA 97.4 0.00015 3.2E-09 56.0 3.2 62 115-178 1-75 (163)
211 KOG2915 tRNA(1-methyladenosine 97.4 0.0038 8.1E-08 51.7 11.1 120 87-217 77-213 (314)
212 COG4301 Uncharacterized conser 97.3 0.0014 3.1E-08 53.3 8.3 103 112-217 77-197 (321)
213 TIGR02143 trmA_only tRNA (urac 97.3 0.00025 5.5E-09 62.2 4.4 52 115-168 199-256 (353)
214 PF03059 NAS: Nicotianamine sy 97.3 0.0012 2.6E-08 55.5 8.0 96 114-213 121-229 (276)
215 KOG4589 Cell division protein 97.3 0.0017 3.6E-08 50.7 8.0 101 103-212 60-182 (232)
216 COG4076 Predicted RNA methylas 97.3 0.00072 1.6E-08 52.7 5.9 96 115-215 34-136 (252)
217 PF07942 N2227: N2227-like pro 97.3 0.014 2.9E-07 49.0 13.8 135 113-267 56-242 (270)
218 COG4798 Predicted methyltransf 97.3 0.0041 8.9E-08 48.9 9.8 140 110-266 45-204 (238)
219 KOG3420 Predicted RNA methylas 97.2 0.00037 8E-09 51.9 3.4 68 113-182 48-124 (185)
220 PRK11760 putative 23S rRNA C24 97.2 0.0056 1.2E-07 52.7 11.0 98 111-219 209-309 (357)
221 COG0500 SmtA SAM-dependent met 97.2 0.0041 8.9E-08 47.2 9.4 96 117-219 52-160 (257)
222 KOG3987 Uncharacterized conser 97.2 0.0003 6.6E-09 55.6 2.7 147 113-269 112-262 (288)
223 KOG2798 Putative trehalase [Ca 97.1 0.012 2.6E-07 49.7 11.9 136 114-266 151-336 (369)
224 KOG3115 Methyltransferase-like 97.1 0.00098 2.1E-08 52.6 4.9 100 114-216 61-185 (249)
225 COG2521 Predicted archaeal met 97.1 0.0045 9.8E-08 50.1 8.7 127 112-268 133-278 (287)
226 KOG3201 Uncharacterized conser 97.0 0.00047 1E-08 52.4 2.5 96 114-214 30-140 (201)
227 PF01170 UPF0020: Putative RNA 97.0 0.0043 9.2E-08 49.1 8.1 92 111-202 26-142 (179)
228 KOG1663 O-methyltransferase [S 97.0 0.0072 1.6E-07 48.9 9.2 101 111-219 71-188 (237)
229 TIGR00027 mthyl_TIGR00027 meth 96.9 0.019 4.2E-07 48.2 11.9 146 112-265 80-248 (260)
230 PRK05031 tRNA (uracil-5-)-meth 96.9 0.00095 2.1E-08 58.9 4.2 52 115-168 208-265 (362)
231 PRK11933 yebU rRNA (cytosine-C 96.9 0.014 3.1E-07 53.1 11.2 102 111-215 111-243 (470)
232 PF07091 FmrO: Ribosomal RNA m 96.8 0.0033 7.2E-08 51.6 6.2 90 112-202 104-200 (251)
233 TIGR01444 fkbM_fam methyltrans 96.8 0.0018 3.9E-08 49.0 4.4 53 116-168 1-59 (143)
234 PF11312 DUF3115: Protein of u 96.7 0.0087 1.9E-07 50.8 8.0 100 114-216 87-244 (315)
235 PF01269 Fibrillarin: Fibrilla 96.6 0.064 1.4E-06 43.4 11.9 133 111-270 71-215 (229)
236 KOG1269 SAM-dependent methyltr 96.6 0.0021 4.6E-08 56.3 3.6 104 111-220 108-221 (364)
237 KOG1709 Guanidinoacetate methy 96.6 0.038 8.1E-07 44.3 10.1 119 90-216 81-208 (271)
238 PF13578 Methyltransf_24: Meth 96.6 0.0011 2.4E-08 47.5 1.5 91 118-214 1-105 (106)
239 COG1889 NOP1 Fibrillarin-like 96.6 0.21 4.5E-06 39.8 14.0 141 111-278 74-228 (231)
240 COG3315 O-Methyltransferase in 96.5 0.024 5.1E-07 48.6 9.6 147 113-265 92-262 (297)
241 PRK11783 rlmL 23S rRNA m(2)G24 96.5 0.022 4.8E-07 54.7 10.5 104 112-215 189-348 (702)
242 PF02384 N6_Mtase: N-6 DNA Met 96.3 0.017 3.6E-07 49.9 7.6 101 111-214 44-183 (311)
243 TIGR02987 met_A_Alw26 type II 96.2 0.023 5E-07 52.8 8.5 67 113-179 31-119 (524)
244 TIGR00308 TRM1 tRNA(guanine-26 96.1 0.027 5.9E-07 49.8 8.0 91 115-214 46-147 (374)
245 PF04989 CmcI: Cephalosporin h 96.0 0.022 4.8E-07 45.6 6.3 99 114-218 33-151 (206)
246 COG1092 Predicted SAM-dependen 96.0 0.021 4.6E-07 50.5 6.7 96 114-214 218-336 (393)
247 TIGR00006 S-adenosyl-methyltra 95.8 0.039 8.4E-07 47.2 7.4 67 100-168 9-80 (305)
248 PF10672 Methyltrans_SAM: S-ad 95.7 0.047 1E-06 46.4 7.4 99 112-214 122-238 (286)
249 PF01795 Methyltransf_5: MraW 95.6 0.052 1.1E-06 46.5 7.4 66 100-167 9-79 (310)
250 COG2520 Predicted methyltransf 95.6 0.053 1.1E-06 47.1 7.3 98 112-219 187-294 (341)
251 PF03602 Cons_hypoth95: Conser 95.5 0.021 4.5E-07 45.3 4.4 99 113-218 42-156 (183)
252 KOG2793 Putative N2,N2-dimethy 95.5 0.09 1.9E-06 43.5 8.1 98 114-217 87-202 (248)
253 PF01861 DUF43: Protein of unk 95.5 0.32 6.8E-06 40.0 11.0 94 113-212 44-147 (243)
254 COG2265 TrmA SAM-dependent met 95.3 0.064 1.4E-06 48.4 7.3 84 111-201 291-387 (432)
255 COG1064 AdhP Zn-dependent alco 95.3 0.12 2.7E-06 44.8 8.6 93 111-217 164-262 (339)
256 KOG2918 Carboxymethyl transfer 95.2 0.53 1.1E-05 40.1 11.8 143 111-268 85-278 (335)
257 PF07757 AdoMet_MTase: Predict 95.2 0.018 3.9E-07 40.8 2.7 31 113-145 58-88 (112)
258 PLN02668 indole-3-acetate carb 95.1 0.35 7.5E-06 42.9 11.0 103 113-218 63-241 (386)
259 COG1041 Predicted DNA modifica 94.9 0.36 7.8E-06 41.9 10.3 100 111-215 195-311 (347)
260 PF04072 LCM: Leucine carboxyl 94.8 0.14 3.1E-06 40.5 7.2 87 112-198 77-183 (183)
261 PF03141 Methyltransf_29: Puta 94.7 0.083 1.8E-06 47.7 6.1 94 112-214 364-467 (506)
262 KOG2730 Methylase [General fun 94.6 0.043 9.3E-07 44.1 3.6 54 113-168 94-154 (263)
263 COG0116 Predicted N6-adenine-s 94.1 0.21 4.5E-06 43.9 7.1 69 111-179 189-306 (381)
264 COG1255 Uncharacterized protei 93.9 1 2.2E-05 32.4 8.9 80 112-202 12-95 (129)
265 COG0275 Predicted S-adenosylme 93.7 0.3 6.5E-06 41.4 7.0 66 100-167 12-83 (314)
266 COG0742 N6-adenine-specific me 93.4 0.77 1.7E-05 36.3 8.5 100 113-217 43-156 (187)
267 PF03686 UPF0146: Uncharacteri 93.3 0.32 6.9E-06 35.7 5.8 87 112-214 12-102 (127)
268 COG4627 Uncharacterized protei 93.3 0.062 1.4E-06 40.8 2.2 40 172-214 47-86 (185)
269 PF06859 Bin3: Bicoid-interact 92.9 0.032 6.9E-07 39.8 0.2 85 173-269 2-94 (110)
270 KOG3924 Putative protein methy 92.9 0.45 9.7E-06 41.8 7.1 110 103-220 184-314 (419)
271 KOG2352 Predicted spermine/spe 92.9 0.92 2E-05 41.0 9.2 97 116-216 51-163 (482)
272 KOG4058 Uncharacterized conser 92.8 0.45 9.7E-06 35.9 6.1 96 112-219 71-177 (199)
273 COG1189 Predicted rRNA methyla 92.8 1.3 2.8E-05 36.3 9.2 139 112-268 78-225 (245)
274 PRK10742 putative methyltransf 92.4 0.85 1.8E-05 37.8 7.9 108 102-218 77-223 (250)
275 PF05958 tRNA_U5-meth_tr: tRNA 92.4 0.21 4.6E-06 43.9 4.7 49 116-166 199-253 (352)
276 KOG0822 Protein kinase inhibit 92.3 1.1 2.5E-05 40.9 9.0 126 73-209 333-473 (649)
277 PF03492 Methyltransf_7: SAM d 92.2 0.37 8E-06 42.1 5.9 106 111-219 14-188 (334)
278 COG0144 Sun tRNA and rRNA cyto 90.7 4.4 9.5E-05 35.8 11.1 105 111-218 154-292 (355)
279 PF05971 Methyltransf_10: Prot 90.6 1.1 2.4E-05 38.3 6.9 73 114-187 103-192 (299)
280 KOG1562 Spermidine synthase [A 90.5 0.86 1.9E-05 38.6 6.0 99 112-215 120-237 (337)
281 KOG1501 Arginine N-methyltrans 90.5 0.7 1.5E-05 41.3 5.7 89 113-202 66-165 (636)
282 KOG2187 tRNA uracil-5-methyltr 90.4 0.35 7.7E-06 43.9 4.0 55 111-167 381-441 (534)
283 PF03514 GRAS: GRAS domain fam 90.1 8.1 0.00018 34.4 12.4 112 101-219 100-248 (374)
284 PF11899 DUF3419: Protein of u 89.9 0.91 2E-05 40.3 6.2 65 152-219 270-339 (380)
285 cd08283 FDH_like_1 Glutathione 89.4 4.3 9.3E-05 36.1 10.2 99 111-215 182-307 (386)
286 PF10354 DUF2431: Domain of un 89.1 6.7 0.00014 30.5 9.8 122 119-269 2-154 (166)
287 KOG1099 SAM-dependent methyltr 88.9 1.8 3.9E-05 35.4 6.5 93 111-211 39-160 (294)
288 COG1063 Tdh Threonine dehydrog 88.7 3 6.5E-05 36.7 8.6 94 115-219 170-274 (350)
289 PF02153 PDH: Prephenate dehyd 88.2 1 2.2E-05 37.8 5.1 74 127-210 1-75 (258)
290 cd00315 Cyt_C5_DNA_methylase C 88.2 4.4 9.6E-05 34.3 9.0 124 116-264 2-140 (275)
291 PF01189 Nol1_Nop2_Fmu: NOL1/N 88.0 2.4 5.1E-05 36.1 7.2 103 111-216 83-221 (283)
292 KOG2651 rRNA adenine N-6-methy 87.5 1.2 2.6E-05 39.1 5.1 42 111-153 151-193 (476)
293 PF05206 TRM13: Methyltransfer 86.8 1.2 2.6E-05 37.4 4.6 37 111-147 16-57 (259)
294 KOG0024 Sorbitol dehydrogenase 86.8 5 0.00011 34.6 8.3 95 111-216 167-275 (354)
295 PRK01747 mnmC bifunctional tRN 86.7 2.1 4.5E-05 41.2 6.8 95 114-211 58-203 (662)
296 PF02636 Methyltransf_28: Puta 85.8 1.4 3E-05 36.8 4.6 35 114-148 19-61 (252)
297 PRK07502 cyclohexadienyl dehyd 84.7 6.4 0.00014 33.8 8.4 89 114-211 6-97 (307)
298 PRK09424 pntA NAD(P) transhydr 83.6 6.8 0.00015 36.3 8.3 96 113-215 164-286 (509)
299 PF07109 Mg-por_mtran_C: Magne 83.3 3.6 7.7E-05 28.8 4.9 81 182-279 5-97 (97)
300 PRK07417 arogenate dehydrogena 80.8 9.7 0.00021 32.2 7.9 78 116-202 2-82 (279)
301 PF05430 Methyltransf_30: S-ad 80.5 11 0.00023 27.8 6.9 52 192-278 71-122 (124)
302 PF06962 rRNA_methylase: Putat 80.3 4 8.7E-05 30.7 4.7 72 139-215 1-93 (140)
303 PF14338 Mrr_N: Mrr N-terminal 78.9 0.86 1.9E-05 31.6 0.7 30 2-31 62-91 (92)
304 PF12692 Methyltransf_17: S-ad 78.8 12 0.00027 28.4 6.7 32 114-145 29-60 (160)
305 PF07279 DUF1442: Protein of u 78.1 35 0.00077 27.7 10.3 97 113-219 41-153 (218)
306 PTZ00357 methyltransferase; Pr 77.4 13 0.00029 35.6 7.9 130 72-202 639-822 (1072)
307 COG3510 CmcI Cephalosporin hyd 77.2 21 0.00045 28.6 7.8 103 113-221 69-187 (237)
308 COG1565 Uncharacterized conser 77.1 7.1 0.00015 34.2 5.8 61 81-148 51-120 (370)
309 COG5379 BtaA S-adenosylmethion 76.7 3.9 8.5E-05 34.7 4.0 67 146-215 296-367 (414)
310 PF02254 TrkA_N: TrkA-N domain 75.9 6.9 0.00015 27.9 4.9 81 122-212 4-94 (116)
311 PF01358 PARP_regulatory: Poly 74.7 12 0.00027 31.7 6.4 52 112-164 57-112 (294)
312 COG0541 Ffh Signal recognition 73.9 12 0.00025 33.8 6.4 104 113-219 99-226 (451)
313 PHA01634 hypothetical protein 73.5 6.3 0.00014 29.1 3.9 40 113-153 28-68 (156)
314 TIGR00675 dcm DNA-methyltransf 72.9 19 0.00041 31.2 7.5 122 117-263 1-136 (315)
315 PF05711 TylF: Macrocin-O-meth 72.0 6.4 0.00014 32.8 4.2 94 114-214 75-212 (248)
316 cd08237 ribitol-5-phosphate_DH 70.8 27 0.00059 30.3 8.2 93 112-215 162-257 (341)
317 PRK08507 prephenate dehydrogen 70.7 21 0.00046 30.1 7.3 78 116-202 2-82 (275)
318 PRK06719 precorrin-2 dehydroge 70.5 40 0.00086 25.9 8.1 77 113-198 12-91 (157)
319 PRK05562 precorrin-2 dehydroge 70.4 42 0.0009 27.5 8.5 80 113-199 24-107 (223)
320 TIGR02822 adh_fam_2 zinc-bindi 70.3 36 0.00078 29.4 8.8 91 111-216 163-256 (329)
321 PF13460 NAD_binding_10: NADH( 69.4 50 0.0011 25.4 10.7 88 120-216 3-99 (183)
322 KOG2920 Predicted methyltransf 69.1 4 8.6E-05 34.5 2.4 96 112-212 115-232 (282)
323 KOG1098 Putative SAM-dependent 69.0 8.4 0.00018 36.2 4.5 44 103-147 35-79 (780)
324 PF01210 NAD_Gly3P_dh_N: NAD-d 68.5 9.6 0.00021 29.2 4.3 81 116-202 1-94 (157)
325 PF04445 SAM_MT: Putative SAM- 68.4 21 0.00045 29.5 6.4 72 103-178 65-157 (234)
326 TIGR01470 cysG_Nterm siroheme 68.3 20 0.00044 28.9 6.3 63 114-179 9-76 (205)
327 PRK00066 ldh L-lactate dehydro 67.4 29 0.00063 30.0 7.5 101 113-214 5-122 (315)
328 KOG1269 SAM-dependent methyltr 67.3 21 0.00046 31.6 6.6 104 113-221 180-320 (364)
329 PF00107 ADH_zinc_N: Zinc-bind 67.3 20 0.00044 25.9 5.8 82 123-217 1-92 (130)
330 cd05290 LDH_3 A subgroup of L- 67.0 25 0.00055 30.3 7.0 98 117-215 2-120 (307)
331 PF03446 NAD_binding_2: NAD bi 66.6 11 0.00023 29.1 4.3 77 117-202 4-85 (163)
332 PF01555 N6_N4_Mtase: DNA meth 66.1 14 0.0003 29.6 5.1 40 112-153 190-230 (231)
333 PRK03659 glutathione-regulated 65.9 28 0.00061 33.1 7.7 85 116-212 402-496 (601)
334 COG0287 TyrA Prephenate dehydr 65.7 23 0.00049 30.2 6.3 81 115-202 4-89 (279)
335 PRK09880 L-idonate 5-dehydroge 65.4 49 0.0011 28.7 8.7 92 113-215 169-267 (343)
336 cd05188 MDR Medium chain reduc 65.3 53 0.0012 26.8 8.6 92 112-216 133-234 (271)
337 KOG2539 Mitochondrial/chloropl 64.6 22 0.00047 32.4 6.2 99 114-215 201-316 (491)
338 TIGR01202 bchC 2-desacetyl-2-h 63.5 38 0.00082 29.0 7.5 85 114-215 145-232 (308)
339 PF14740 DUF4471: Domain of un 63.4 5.2 0.00011 34.1 2.1 77 157-264 200-286 (289)
340 cd05291 HicDH_like L-2-hydroxy 62.9 39 0.00085 29.0 7.4 98 116-214 2-117 (306)
341 cd08254 hydroxyacyl_CoA_DH 6-h 62.5 66 0.0014 27.5 9.0 91 111-215 163-264 (338)
342 PF08845 SymE_toxin: Toxin Sym 62.5 5.7 0.00012 24.8 1.6 17 253-269 31-47 (57)
343 PF07991 IlvN: Acetohydroxy ac 61.1 17 0.00037 28.1 4.3 89 114-214 4-95 (165)
344 PF03807 F420_oxidored: NADP o 60.6 7.4 0.00016 26.7 2.2 73 123-202 6-85 (96)
345 cd01842 SGNH_hydrolase_like_5 60.5 15 0.00033 28.8 4.0 43 172-218 50-102 (183)
346 TIGR03366 HpnZ_proposed putati 60.3 1E+02 0.0022 25.8 9.9 92 113-216 120-220 (280)
347 PF10237 N6-adenineMlase: Prob 60.2 79 0.0017 24.5 10.9 93 112-214 24-123 (162)
348 KOG1596 Fibrillarin and relate 59.9 82 0.0018 26.3 8.1 98 111-216 154-263 (317)
349 COG1748 LYS9 Saccharopine dehy 59.8 51 0.0011 29.5 7.6 80 115-199 2-90 (389)
350 KOG2666 UDP-glucose/GDP-mannos 59.7 9.1 0.0002 33.0 2.8 31 115-145 2-34 (481)
351 PTZ00117 malate dehydrogenase; 58.3 96 0.0021 26.9 9.1 99 114-214 5-122 (319)
352 KOG2352 Predicted spermine/spe 58.0 11 0.00024 34.3 3.3 130 82-220 268-421 (482)
353 PRK10669 putative cation:proto 57.9 53 0.0011 30.9 7.9 81 122-212 423-513 (558)
354 TIGR01771 L-LDH-NAD L-lactate 57.7 29 0.00062 29.8 5.7 94 120-214 2-113 (299)
355 PRK12490 6-phosphogluconate de 56.7 46 0.001 28.4 6.8 77 117-202 3-85 (299)
356 TIGR01763 MalateDH_bact malate 56.7 51 0.0011 28.4 7.0 99 115-215 2-119 (305)
357 cd05213 NAD_bind_Glutamyl_tRNA 55.7 1E+02 0.0023 26.5 8.9 98 113-221 177-278 (311)
358 PRK03562 glutathione-regulated 54.8 55 0.0012 31.4 7.5 86 115-212 401-496 (621)
359 PF05050 Methyltransf_21: Meth 54.7 18 0.00039 27.3 3.7 32 119-150 1-37 (167)
360 PRK05225 ketol-acid reductoiso 54.6 16 0.00034 33.4 3.6 90 113-214 35-131 (487)
361 TIGR03201 dearomat_had 6-hydro 53.7 1.2E+02 0.0026 26.4 9.1 44 111-155 164-209 (349)
362 PRK06545 prephenate dehydrogen 53.5 69 0.0015 28.3 7.6 27 171-202 59-86 (359)
363 TIGR03451 mycoS_dep_FDH mycoth 53.2 1.5E+02 0.0032 25.9 9.6 94 111-215 174-277 (358)
364 TIGR00561 pntA NAD(P) transhyd 52.9 53 0.0012 30.6 6.8 91 113-211 163-281 (511)
365 PLN02353 probable UDP-glucose 52.6 1E+02 0.0022 28.5 8.7 100 116-220 3-132 (473)
366 PRK07680 late competence prote 52.5 71 0.0015 26.8 7.2 81 116-202 2-87 (273)
367 PF14947 HTH_45: Winged helix- 52.4 4.9 0.00011 26.7 0.1 26 1-27 40-66 (77)
368 PRK11908 NAD-dependent epimera 52.3 87 0.0019 27.1 8.0 60 116-177 3-73 (347)
369 PRK12491 pyrroline-5-carboxyla 52.0 76 0.0016 26.8 7.3 79 116-202 4-88 (272)
370 PRK09489 rsmC 16S ribosomal RN 52.0 1.6E+02 0.0035 25.9 9.5 96 113-217 19-115 (342)
371 PLN02602 lactate dehydrogenase 52.0 74 0.0016 28.1 7.4 99 115-214 38-154 (350)
372 cd08255 2-desacetyl-2-hydroxye 51.9 1.2E+02 0.0027 25.0 8.7 92 111-215 95-191 (277)
373 cd08230 glucose_DH Glucose deh 51.7 1.2E+02 0.0027 26.3 8.9 93 113-217 172-272 (355)
374 PHA03108 poly(A) polymerase sm 51.1 1E+02 0.0022 26.2 7.5 33 114-146 61-97 (300)
375 PF03721 UDPG_MGDP_dh_N: UDP-g 50.8 34 0.00073 27.1 4.7 99 116-219 2-124 (185)
376 PTZ00082 L-lactate dehydrogena 50.7 1E+02 0.0023 26.7 8.1 100 114-214 6-128 (321)
377 cd01338 MDH_choloroplast_like 50.6 88 0.0019 27.2 7.6 99 115-214 3-128 (322)
378 COG2085 Predicted dinucleotide 50.4 40 0.00087 27.3 5.0 82 122-215 7-93 (211)
379 PTZ00325 malate dehydrogenase; 50.3 85 0.0019 27.3 7.4 102 113-214 7-125 (321)
380 COG0604 Qor NADPH:quinone redu 50.1 67 0.0014 28.0 6.8 95 111-217 140-244 (326)
381 PRK06718 precorrin-2 dehydroge 50.0 1.2E+02 0.0026 24.3 7.8 63 113-179 9-77 (202)
382 PRK06223 malate dehydrogenase; 49.9 84 0.0018 26.9 7.4 64 115-179 3-77 (307)
383 PRK05442 malate dehydrogenase; 49.7 88 0.0019 27.3 7.4 101 113-214 3-130 (326)
384 PF13241 NAD_binding_7: Putati 49.3 88 0.0019 21.8 7.5 62 113-179 6-67 (103)
385 cd05294 LDH-like_MDH_nadp A la 49.3 79 0.0017 27.3 7.1 99 116-215 2-122 (309)
386 KOG1227 Putative methyltransfe 49.1 7.2 0.00016 33.3 0.6 96 114-220 195-303 (351)
387 PF10017 Methyltransf_33: Hist 49.0 38 0.00083 24.9 4.4 32 243-274 93-125 (127)
388 PRK09496 trkA potassium transp 48.4 84 0.0018 28.5 7.5 63 114-178 231-303 (453)
389 PRK05479 ketol-acid reductoiso 48.2 48 0.001 29.0 5.5 86 114-211 17-105 (330)
390 cd05292 LDH_2 A subgroup of L- 48.2 1.1E+02 0.0024 26.4 7.8 98 116-214 2-116 (308)
391 KOG0023 Alcohol dehydrogenase, 48.1 1.8E+02 0.0039 25.5 8.6 35 111-146 179-214 (360)
392 PF08952 DUF1866: Domain of un 48.0 53 0.0012 24.9 5.0 28 185-214 7-34 (146)
393 TIGR01772 MDH_euk_gproteo mala 47.6 62 0.0013 28.0 6.1 99 117-215 2-117 (312)
394 PRK09496 trkA potassium transp 46.9 1.8E+02 0.0039 26.3 9.4 61 116-179 2-72 (453)
395 TIGR01759 MalateDH-SF1 malate 46.8 92 0.002 27.1 7.1 100 114-214 3-129 (323)
396 PRK12921 2-dehydropantoate 2-r 46.4 1.4E+02 0.003 25.3 8.2 88 116-213 2-101 (305)
397 PRK11524 putative methyltransf 46.1 58 0.0012 27.7 5.7 41 112-154 207-248 (284)
398 COG0373 HemA Glutamyl-tRNA red 45.3 1.2E+02 0.0025 27.5 7.6 99 113-223 177-281 (414)
399 COG0039 Mdh Malate/lactate deh 45.3 1.6E+02 0.0035 25.6 8.2 99 116-215 2-119 (313)
400 PRK14806 bifunctional cyclohex 45.0 1.1E+02 0.0023 30.0 8.1 82 115-202 4-88 (735)
401 PF00056 Ldh_1_N: lactate/mala 44.8 86 0.0019 23.4 5.9 98 116-214 2-118 (141)
402 KOG1209 1-Acyl dihydroxyaceton 44.3 1.8E+02 0.0039 23.9 10.9 76 112-212 5-84 (289)
403 PRK13699 putative methylase; P 44.2 69 0.0015 26.3 5.7 40 112-153 162-202 (227)
404 PLN02688 pyrroline-5-carboxyla 43.8 1.1E+02 0.0024 25.4 7.0 79 116-202 2-86 (266)
405 cd00300 LDH_like L-lactate deh 43.3 94 0.002 26.6 6.6 95 119-214 3-115 (300)
406 PF03486 HI0933_like: HI0933-l 43.1 26 0.00056 31.6 3.2 82 116-197 2-89 (409)
407 KOG2782 Putative SAM dependent 42.9 27 0.00058 28.5 2.9 47 101-149 33-79 (303)
408 TIGR01758 MDH_euk_cyt malate d 42.3 59 0.0013 28.3 5.3 46 169-214 72-125 (324)
409 TIGR00872 gnd_rel 6-phosphoglu 41.9 85 0.0018 26.8 6.1 77 116-202 2-84 (298)
410 cd00704 MDH Malate dehydrogena 41.8 42 0.00091 29.2 4.3 46 169-214 73-126 (323)
411 PRK15001 SAM-dependent 23S rib 41.8 1.2E+02 0.0026 27.1 7.1 89 116-215 47-143 (378)
412 PRK04663 murD UDP-N-acetylmura 41.3 52 0.0011 29.9 5.0 69 115-183 8-79 (438)
413 cd00401 AdoHcyase S-adenosyl-L 41.2 87 0.0019 28.3 6.2 87 113-215 201-290 (413)
414 PRK08293 3-hydroxybutyryl-CoA 41.0 1.7E+02 0.0036 24.8 7.8 84 115-202 4-111 (287)
415 CHL00194 ycf39 Ycf39; Provisio 40.7 2.3E+02 0.005 24.2 11.7 57 120-178 5-70 (317)
416 TIGR03329 Phn_aa_oxid putative 40.7 34 0.00073 31.3 3.7 32 115-146 25-58 (460)
417 COG0686 Ald Alanine dehydrogen 40.7 1.4E+02 0.0029 26.1 6.8 96 114-218 168-270 (371)
418 cd08232 idonate-5-DH L-idonate 40.6 2.3E+02 0.0049 24.2 8.8 89 113-214 165-262 (339)
419 COG0059 IlvC Ketol-acid reduct 40.6 79 0.0017 27.3 5.4 88 113-212 17-107 (338)
420 COG2933 Predicted SAM-dependen 40.6 54 0.0012 27.7 4.4 55 111-168 209-263 (358)
421 COG0031 CysK Cysteine synthase 40.3 1.7E+02 0.0036 25.3 7.5 33 113-145 168-204 (300)
422 cd01337 MDH_glyoxysomal_mitoch 40.3 1E+02 0.0023 26.6 6.4 98 116-215 2-118 (310)
423 PF07101 DUF1363: Protein of u 39.9 11 0.00024 26.0 0.3 18 117-134 6-23 (124)
424 PF01638 HxlR: HxlR-like helix 39.9 6.3 0.00014 27.0 -0.9 28 1-28 40-73 (90)
425 PRK05086 malate dehydrogenase; 39.7 1.3E+02 0.0029 25.9 7.0 98 116-214 2-118 (312)
426 PF06690 DUF1188: Protein of u 39.7 1.3E+02 0.0027 25.0 6.3 68 114-188 42-112 (252)
427 COG3432 Predicted transcriptio 39.4 13 0.00028 25.9 0.6 26 2-27 53-81 (95)
428 COG3320 Putative dehydrogenase 39.2 51 0.0011 29.2 4.3 65 121-185 6-100 (382)
429 TIGR00631 uvrb excinuclease AB 38.2 3.7E+02 0.008 26.1 10.3 39 241-279 159-201 (655)
430 TIGR02764 spore_ybaN_pdaB poly 38.1 52 0.0011 25.9 4.0 51 190-266 138-188 (191)
431 PRK09273 hypothetical protein; 38.0 48 0.001 26.8 3.7 41 114-154 63-103 (211)
432 KOG0780 Signal recognition par 37.9 1.5E+02 0.0033 26.6 6.9 104 112-218 99-226 (483)
433 PRK06522 2-dehydropantoate 2-r 37.9 2.2E+02 0.0047 24.0 8.1 87 116-214 2-100 (304)
434 cd08281 liver_ADH_like1 Zinc-d 37.8 2.7E+02 0.0059 24.3 8.9 93 111-215 189-291 (371)
435 COG0270 Dcm Site-specific DNA 37.3 2.4E+02 0.0052 24.5 8.3 121 114-261 3-141 (328)
436 PRK13699 putative methylase; P 37.2 1.3E+02 0.0029 24.5 6.3 20 190-212 51-70 (227)
437 PF14314 Methyltrans_Mon: Viru 37.0 80 0.0017 30.5 5.5 40 99-141 311-350 (675)
438 TIGR01915 npdG NADPH-dependent 37.0 1.8E+02 0.0038 23.5 7.1 27 171-202 67-93 (219)
439 PLN02712 arogenate dehydrogena 36.8 1.7E+02 0.0037 28.4 7.8 79 114-202 52-134 (667)
440 COG2910 Putative NADH-flavin r 36.7 2E+02 0.0042 23.1 6.7 88 122-214 7-104 (211)
441 TIGR01692 HIBADH 3-hydroxyisob 36.6 1.2E+02 0.0027 25.6 6.3 72 123-202 3-81 (288)
442 PRK06928 pyrroline-5-carboxyla 36.5 1.3E+02 0.0027 25.5 6.3 81 116-202 3-89 (277)
443 PRK08655 prephenate dehydrogen 35.6 1.6E+02 0.0035 26.8 7.2 82 116-209 2-87 (437)
444 PRK10637 cysG siroheme synthas 35.0 1.8E+02 0.0038 26.7 7.4 63 113-179 11-79 (457)
445 cd05278 FDH_like Formaldehyde 34.9 2.9E+02 0.0063 23.6 9.3 93 111-214 165-267 (347)
446 cd00650 LDH_MDH_like NAD-depen 33.9 1.2E+02 0.0025 25.4 5.7 77 138-214 27-119 (263)
447 cd01336 MDH_cytoplasmic_cytoso 33.9 1.1E+02 0.0024 26.6 5.7 47 169-215 75-129 (325)
448 PRK07679 pyrroline-5-carboxyla 33.9 1.9E+02 0.0042 24.2 7.1 81 115-202 4-90 (279)
449 PLN02819 lysine-ketoglutarate 33.7 91 0.002 31.9 5.6 68 113-180 568-656 (1042)
450 COG0286 HsdM Type I restrictio 33.6 97 0.0021 28.7 5.5 42 112-153 185-231 (489)
451 cd05296 GH4_P_beta_glucosidase 33.2 1.8E+02 0.0039 26.4 7.0 63 116-179 2-82 (419)
452 PF05772 NinB: NinB protein; 33.2 69 0.0015 23.7 3.6 28 231-258 46-73 (127)
453 TIGR02825 B4_12hDH leukotriene 33.0 3.1E+02 0.0067 23.3 9.5 92 111-215 136-238 (325)
454 cd01093 CRIB_PAK_like PAK (p21 33.0 21 0.00046 21.1 0.7 18 247-264 27-44 (46)
455 PF11253 DUF3052: Protein of u 32.9 2E+02 0.0044 21.2 8.1 69 173-270 46-114 (127)
456 PRK11064 wecC UDP-N-acetyl-D-m 32.8 3.7E+02 0.0081 24.2 10.2 98 115-218 4-122 (415)
457 COG2081 Predicted flavoprotein 32.6 80 0.0017 28.3 4.5 52 115-166 4-57 (408)
458 PLN02427 UDP-apiose/xylose syn 32.6 1E+02 0.0022 27.3 5.4 64 115-179 15-93 (386)
459 PF06406 StbA: StbA protein; 32.6 1.2E+02 0.0026 26.3 5.6 62 86-148 246-309 (318)
460 cd08234 threonine_DH_like L-th 32.3 3.1E+02 0.0068 23.2 9.4 92 111-215 157-258 (334)
461 PRK08163 salicylate hydroxylas 32.2 65 0.0014 28.5 4.1 32 114-145 4-35 (396)
462 PRK06475 salicylate hydroxylas 32.2 55 0.0012 29.2 3.6 31 115-145 3-33 (400)
463 PF02502 LacAB_rpiB: Ribose/Ga 32.0 60 0.0013 24.5 3.2 49 118-166 60-109 (140)
464 COG0503 Apt Adenine/guanine ph 32.0 1.2E+02 0.0026 23.9 5.0 41 199-267 111-151 (179)
465 PRK08229 2-dehydropantoate 2-r 31.9 3.4E+02 0.0073 23.4 8.9 85 116-211 4-104 (341)
466 TIGR00689 rpiB_lacA_lacB sugar 31.7 78 0.0017 24.0 3.8 37 118-154 59-95 (144)
467 PRK14873 primosome assembly pr 31.6 3.6E+02 0.0078 26.3 9.0 97 114-213 430-535 (665)
468 PRK09599 6-phosphogluconate de 31.6 3.1E+02 0.0068 23.3 8.0 77 117-202 3-85 (301)
469 TIGR01120 rpiB ribose 5-phosph 31.6 79 0.0017 23.9 3.8 37 118-154 60-96 (143)
470 PRK06847 hypothetical protein; 31.3 68 0.0015 28.1 4.0 32 114-145 4-35 (375)
471 cd08238 sorbose_phosphate_red 31.0 3.9E+02 0.0084 23.9 10.4 44 111-154 173-221 (410)
472 TIGR00006 S-adenosyl-methyltra 31.0 64 0.0014 27.9 3.6 26 188-216 217-242 (305)
473 COG2084 MmsB 3-hydroxyisobutyr 30.4 1.2E+02 0.0027 25.8 5.2 79 123-211 7-92 (286)
474 PF09959 DUF2193: Uncharacteri 30.0 2E+02 0.0043 25.8 6.3 87 46-134 66-157 (499)
475 COG0275 Predicted S-adenosylme 29.9 77 0.0017 27.3 3.8 27 188-217 221-247 (314)
476 PLN02927 antheraxanthin epoxid 29.9 66 0.0014 31.1 3.8 34 112-145 79-112 (668)
477 PLN02896 cinnamyl-alcohol dehy 29.9 3.7E+02 0.008 23.3 10.3 67 113-180 9-87 (353)
478 PLN00112 malate dehydrogenase 29.8 2.8E+02 0.0061 25.4 7.6 104 111-215 97-227 (444)
479 cd05293 LDH_1 A subgroup of L- 29.6 3.3E+02 0.0072 23.5 7.8 101 113-214 2-120 (312)
480 PF02056 Glyco_hydro_4: Family 29.5 61 0.0013 25.7 3.0 63 116-178 1-79 (183)
481 PRK07236 hypothetical protein; 29.3 76 0.0017 28.1 4.0 32 114-145 6-37 (386)
482 PRK06130 3-hydroxybutyryl-CoA 29.2 2.8E+02 0.006 23.7 7.4 83 114-202 4-106 (311)
483 cd05298 GH4_GlvA_pagL_like Gly 29.2 84 0.0018 28.7 4.2 35 116-151 2-44 (437)
484 TIGR02818 adh_III_F_hyde S-(hy 29.0 3.6E+02 0.0078 23.6 8.2 94 111-215 183-288 (368)
485 KOG2811 Uncharacterized conser 29.0 88 0.0019 27.7 4.0 31 115-145 184-217 (420)
486 PF07992 Pyr_redox_2: Pyridine 29.0 68 0.0015 25.0 3.3 30 116-145 1-30 (201)
487 PRK04176 ribulose-1,5-biphosph 28.9 1.2E+02 0.0026 25.3 4.9 31 115-145 26-56 (257)
488 PRK05571 ribose-5-phosphate is 28.8 95 0.0021 23.7 3.8 35 120-154 64-98 (148)
489 TIGR01757 Malate-DH_plant mala 28.7 3.3E+02 0.0072 24.5 7.7 104 111-215 41-171 (387)
490 PF13450 NAD_binding_8: NAD(P) 28.6 61 0.0013 20.7 2.4 26 120-145 2-27 (68)
491 PRK10458 DNA cytosine methylas 27.8 2.9E+02 0.0063 25.5 7.4 36 114-150 88-124 (467)
492 PF01494 FAD_binding_3: FAD bi 27.7 66 0.0014 27.5 3.3 30 116-145 3-32 (356)
493 PF06969 HemN_C: HemN C-termin 27.6 27 0.00058 22.0 0.6 22 3-25 44-65 (66)
494 PRK00050 16S rRNA m(4)C1402 me 27.5 80 0.0017 27.1 3.6 27 188-217 213-239 (296)
495 PRK09260 3-hydroxybutyryl-CoA 27.4 3.8E+02 0.0082 22.6 7.8 28 244-271 159-186 (288)
496 COG1733 Predicted transcriptio 27.2 22 0.00047 26.0 0.1 28 1-28 58-91 (120)
497 cd05197 GH4_glycoside_hydrolas 27.1 98 0.0021 28.1 4.3 62 116-178 2-80 (425)
498 PRK07530 3-hydroxybutyryl-CoA 26.9 3.9E+02 0.0084 22.6 8.3 90 114-213 4-117 (292)
499 KOG3851 Sulfide:quinone oxidor 26.7 98 0.0021 27.1 3.9 33 112-144 37-71 (446)
500 PRK11730 fadB multifunctional 26.6 2.8E+02 0.0061 27.2 7.5 150 114-271 313-497 (715)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=100.00 E-value=1.4e-45 Score=306.84 Aligned_cols=234 Identities=35% Similarity=0.660 Sum_probs=203.3
Q ss_pred CeEecChhcchhhcCCC-CChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhh
Q 023625 16 DEYFLTPASRLLLKDTP-LKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMIT 94 (279)
Q Consensus 16 ~~y~~t~~s~~L~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 94 (279)
++|+||++|+.|+.+++ .++..++.+...+..+.+|.+|.+++++|+ ++|+..+|.++|+++.++|+....|..+|..
T Consensus 4 ~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~ 82 (241)
T PF00891_consen 4 DRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAMAE 82 (241)
T ss_dssp EEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHHHH
T ss_pred CEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHHHh
Confidence 49999999995555444 678888877677889999999999999998 8999999999999999999999999999999
Q ss_pred cchhhH-HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCCcc
Q 023625 95 DSELIA-GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~ 173 (279)
.+.... ..+...++ +++..+|||||||+|.++.++++++|+++++++|+|++++.+++ .+||++++||+++++|.+
T Consensus 83 ~~~~~~~~~~~~~~d--~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~-~~rv~~~~gd~f~~~P~~ 159 (241)
T PF00891_consen 83 YSRLNAFDILLEAFD--FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKE-ADRVEFVPGDFFDPLPVA 159 (241)
T ss_dssp HHHHHHHHHHHHHST--TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHH-TTTEEEEES-TTTCCSSE
T ss_pred hhhcchhhhhhcccc--ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhcccc-ccccccccccHHhhhccc
Confidence 888777 66777777 77889999999999999999999999999999999999999988 699999999999888889
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCC--cEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEG--GKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pg--G~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
|+|+++++||+|+|+++.+||++++++|+ || |+|+|+|.++++....+........+|++|++.++|++||.+||
T Consensus 160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~---pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~G~~rt~~e~ 236 (241)
T PF00891_consen 160 DVYLLRHVLHDWSDEDCVKILRNAAAALK---PGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTGGKERTEEEW 236 (241)
T ss_dssp SEEEEESSGGGS-HHHHHHHHHHHHHHSE---ECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHSSS-EEHHHH
T ss_pred cceeeehhhhhcchHHHHHHHHHHHHHhC---CCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 99999999999999999999999999999 78 99999999999987774322222589999999999999999999
Q ss_pred HHHHH
Q 023625 252 KKLFL 256 (279)
Q Consensus 252 ~~ll~ 256 (279)
++||+
T Consensus 237 ~~ll~ 241 (241)
T PF00891_consen 237 EALLK 241 (241)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99985
No 2
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=100.00 E-value=4.6e-40 Score=274.89 Aligned_cols=274 Identities=27% Similarity=0.487 Sum_probs=241.3
Q ss_pred CccccccCceeecCCC--eEecChhcchhh-cCCCCChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhhh
Q 023625 1 MRILVHSGFFAQQKDD--EYFLTPASRLLL-KDTPLKAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWDR 77 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~--~y~~t~~s~~L~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~ 77 (279)
||.|++++++++...+ .|+++|.++++. .++..|+..++....+...++.|..+.++++.++ .+|..++|...++|
T Consensus 64 lr~L~s~~i~k~~~~~~~~Y~~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~ 142 (342)
T KOG3178|consen 64 LRLLVSYSILKCRLVGGEVYSATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGY 142 (342)
T ss_pred HHHHHHhhhceeeeecceeeeccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhh
Confidence 6889999999998864 699999998554 4445789999888888899999999999999988 68888899888999
Q ss_pred hhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCC
Q 023625 78 VADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTND 157 (279)
Q Consensus 78 ~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ 157 (279)
...++.....|+++|...+....+.+++.+.. |++....||||||.|..+..++.+||+++++.+|+|.+++.+....+
T Consensus 143 ~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~G-f~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~ 221 (342)
T KOG3178|consen 143 GGADERFSKDFNGSMSFLSTLVMKKILEVYTG-FKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAP 221 (342)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhhhhhhcc-cccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcC
Confidence 99998888999999999998888888888874 88899999999999999999999999999999999999999887646
Q ss_pred CeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch-hhhhhhhcchh
Q 023625 158 NLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE-SMETQLCFDIL 236 (279)
Q Consensus 158 ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~-~~~~~~~~d~~ 236 (279)
.|+.+.||+|.+.|..|+||+.++||||+|++|+++|+||+++|+ |||+|++.|.+.++...... ........|+.
T Consensus 222 gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvkiLknC~~sL~---~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~l 298 (342)
T KOG3178|consen 222 GVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVKILKNCKKSLP---PGGKIIVVENVTPEEDKFDDIDSSVTRDMDLL 298 (342)
T ss_pred CcceecccccccCCCcCeEEEEeecccCChHHHHHHHHHHHHhCC---CCCEEEEEeccCCCCCCccccccceeehhHHH
Confidence 699999999999999999999999999999999999999999999 79999999999886222111 11122367888
Q ss_pred hhhhcC-CeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 237 MVSLFR-GKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 237 ~~~~~~-~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
|+.... |++|+.+||+.++.++||.+.++.-.+...++|+++|
T Consensus 299 m~~~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 299 MLTQTSGGKERTLKEFQALLPEEGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred HHHHhccceeccHHHHHhcchhhcCceeEEEeccCccchheeCC
Confidence 888764 9999999999999999999999999999999999986
No 3
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=100.00 E-value=1e-32 Score=237.14 Aligned_cols=249 Identities=18% Similarity=0.344 Sum_probs=175.9
Q ss_pred CccccccCceeecCCCeEecChhcc-hhhcCCCC---ChHHHHHHhcChhhHHHHHHHhHhhhcCCCChhHHhhCCChhh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASR-LLLKDTPL---KAAPFVDLVADPLYTTAFHCLGTWLQNDDPSLFETAHGKKVWD 76 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~-~L~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~ 76 (279)
||+|+++|+|++.+ ++|+||+.++ +|.++++. ++..+..+.. ......|.+|.+++|++. +|... ++
T Consensus 44 L~~L~~lgll~~~~-~~y~~t~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r~~~--~~~~~-----~~ 114 (306)
T TIGR02716 44 LETLRQMRVINLED-GKWSLTEFADYMFSPTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVRGQK--NFKGQ-----VP 114 (306)
T ss_pred HHHHHhCCCeEecC-CcEecchhHHhhccCCccchhhhcCchHHHHH-HHHHHHHHhHHHHhcCCc--ccccc-----cC
Confidence 68999999999987 5999999998 55444432 1123333321 223467899999998542 33321 12
Q ss_pred hhhcCchHHHHHHHHhh-hcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-
Q 023625 77 RVADEPKFKSLFYDLMI-TDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG- 154 (279)
Q Consensus 77 ~~~~~~~~~~~f~~~m~-~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~- 154 (279)
+....+.. ..|...|. .......+.+++.++ +.+..+|||||||+|.+++.+++++|+++++++|+|.+++.+++
T Consensus 115 ~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~ 191 (306)
T TIGR02716 115 YPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK--LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNEN 191 (306)
T ss_pred CCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC--CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHH
Confidence 21222222 23444444 333444555666665 67788999999999999999999999999999999999887763
Q ss_pred -----CCCCeEEeeCCCCC-CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-
Q 023625 155 -----TNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM- 227 (279)
Q Consensus 155 -----~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~- 227 (279)
..+|++++.+|+++ +.|++|+|++++++|+|+++++.++|++++++|+ |||+++|.|.+.++.... ...
T Consensus 192 ~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~---pgG~l~i~d~~~~~~~~~-~~~~ 267 (306)
T TIGR02716 192 AAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMR---SGGRLLILDMVIDDPENP-NFDY 267 (306)
T ss_pred HHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcCChHHHHHHHHHHHHhcC---CCCEEEEEEeccCCCCCc-hhhH
Confidence 35799999999997 6777999999999999999999999999999999 799999999988765422 110
Q ss_pred hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 228 ~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
.........|.... ...++.+||.++|+++||+.+++.
T Consensus 268 ~~~~~~~~~~~~~~-~~~~~~~e~~~ll~~aGf~~v~~~ 305 (306)
T TIGR02716 268 LSHYILGAGMPFSV-LGFKEQARYKEILESLGYKDVTMV 305 (306)
T ss_pred HHHHHHHccccccc-ccCCCHHHHHHHHHHcCCCeeEec
Confidence 00111111111111 123357999999999999988654
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.79 E-value=7.4e-19 Score=146.02 Aligned_cols=149 Identities=17% Similarity=0.225 Sum_probs=115.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~v 181 (279)
.+..+|||||||+|.++..+++++ |+++++++|+ +.+++.|++ ...+++++.+|+.+ +.+.+|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 467799999999999999999974 7899999999 999988864 13579999999987 6667999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh------------------cCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL------------------FRG 243 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~------------------~~~ 243 (279)
+|++++++..++|++++++|+ |||.+++.|.+.++.....+ ....+.+... ..-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lk---pgG~l~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 203 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLN---PNGVLVLSEKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENVM 203 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcC---CCeEEEEeecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhccC
Confidence 999998888999999999999 79999999987655432211 0111111000 012
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...+.+++.+++++|||+.+++...
T Consensus 204 ~~~s~~~~~~~l~~aGF~~~~~~~~ 228 (239)
T TIGR00740 204 RTDSIETHKARLKNVGFSHVELWFQ 228 (239)
T ss_pred CCCCHHHHHHHHHHcCCchHHHHHH
Confidence 3459999999999999997765433
No 5
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.78 E-value=1.2e-17 Score=135.94 Aligned_cols=159 Identities=20% Similarity=0.360 Sum_probs=120.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~vl 182 (279)
.++.+|||||||||..+..+++..+..+++++|. +.+++.+++. ...++|+.+|..+ |+| .||+|.++..|
T Consensus 50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence 3688999999999999999999999999999999 9999998852 1239999999999 887 49999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh-hhhhcC-----------------Ce
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL-MVSLFR-----------------GK 244 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~-~~~~~~-----------------~~ 244 (279)
|+++|.+ +.|++++|+|| |||+++++|...+........ ...+... .+-..+ -.
T Consensus 130 rnv~d~~--~aL~E~~RVlK---pgG~~~vle~~~p~~~~~~~~---~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~ 201 (238)
T COG2226 130 RNVTDID--KALKEMYRVLK---PGGRLLVLEFSKPDNPVLRKA---YILYYFKYVLPLIGKLVAKDAEAYEYLAESIRR 201 (238)
T ss_pred hcCCCHH--HHHHHHHHhhc---CCeEEEEEEcCCCCchhhHHH---HHHHHHHhHhhhhceeeecChHHHHHHHHHHHh
Confidence 9999764 88999999999 799999999887765332110 0001111 110111 12
Q ss_pred eCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEe
Q 023625 245 ERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAY 278 (279)
Q Consensus 245 ~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 278 (279)
.-+.+++.++++++||+.+...+.. |...+...+
T Consensus 202 ~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~ 236 (238)
T COG2226 202 FPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGY 236 (238)
T ss_pred CCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEe
Confidence 2388999999999999988865554 444444443
No 6
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.77 E-value=2.1e-17 Score=138.75 Aligned_cols=156 Identities=12% Similarity=0.236 Sum_probs=118.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC--cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~ 173 (279)
..+++.+. +.+..+|||||||+|..+..+++.+ .++++++|+ +.+++.+++. .++++++.+|+.+ +.+ .|
T Consensus 42 ~~~l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 42 TKILSDIE--LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 34555554 6778899999999999999998875 679999999 8888877742 3589999999987 555 49
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
|+|++..++++++.++..++|++++++|+ |||++++.+.......... . .... ..........+.+++.+
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~Lk---PGG~lvi~d~~~~~~~~~~---~--~~~~--~~~~~~~~~~~~~~~~~ 188 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLK---PNGILLITDYCADKIENWD---E--EFKA--YIKKRKYTLIPIQEYGD 188 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcC---CCcEEEEEEeccccccCcH---H--HHHH--HHHhcCCCCCCHHHHHH
Confidence 99999998888887778899999999999 7999999988665432111 0 0000 00001122348899999
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
+++++||+.++..+..
T Consensus 189 ~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 189 LIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHCCCCeeeEEeCc
Confidence 9999999999887764
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.77 E-value=3e-17 Score=137.69 Aligned_cols=161 Identities=19% Similarity=0.267 Sum_probs=118.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC--------CCCeEEeeCCCCC-CCC--ccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT--------NDNLDFLGGNMFE-AIP--QANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~--------~~ri~~~~~d~~~-~~~--~~D~v~ 177 (279)
..+..+|||||||+|.++..++++. |..+++++|+ +.+++.|++. .++++++.+|..+ |.+ .||+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4567899999999999999999875 6779999999 8999887631 2479999999987 665 499999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh--h-hhcC------------
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--V-SLFR------------ 242 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~-~~~~------------ 242 (279)
+..++|++++. .++|++++++|+ |||+++++|...+......+. ...+....+ . ...+
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLk---pGG~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s~ 223 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLK---PGSRVSILDFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSSI 223 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcC---cCcEEEEEECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHHH
Confidence 99999998865 578999999999 799999999875543211110 000111000 0 0000
Q ss_pred CeeCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEe
Q 023625 243 GKERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAY 278 (279)
Q Consensus 243 ~~~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 278 (279)
....+.+|+.++++++||+.++..... +...+..++
T Consensus 224 ~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~~ 260 (261)
T PLN02233 224 NEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVAT 260 (261)
T ss_pred HhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEEe
Confidence 224599999999999999999888775 455665554
No 8
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.76 E-value=2.2e-17 Score=137.67 Aligned_cols=150 Identities=19% Similarity=0.291 Sum_probs=113.2
Q ss_pred CCCCEEEEecCCccHHHHHHHH--HCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIAT--AFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~--~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~~D~v~~~~v 181 (279)
.+..+|||||||+|..+..+++ .+|+.+++++|. +.+++.|++ ...+++++.+|+.+ +.+.+|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 4678999999999999999988 468999999999 999998874 23589999999987 6667999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch------hh------hhhc-C-CeeCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI------LM------VSLF-R-GKERS 247 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~------~~------~~~~-~-~~~r~ 247 (279)
+|++++++...++++++++|+ |||.+++.|.+..+.....+.. ...+.+. .. .... + -...+
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lk---pGG~l~l~e~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~ 210 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLN---PGGALVLSEKFSFEDAKVGELL-FNMHHDFKRANGYSELEISQKRSMLENVMLTDS 210 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcC---CCCEEEEEEecCCCcchhHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCC
Confidence 999998888899999999999 7999999997765543221110 0001000 00 0000 0 11238
Q ss_pred HHHHHHHHHHCCCceeEE
Q 023625 248 VDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~ 265 (279)
+++..++|++|||+.++.
T Consensus 211 ~~~~~~~L~~aGF~~v~~ 228 (247)
T PRK15451 211 VETHKARLHKAGFEHSEL 228 (247)
T ss_pred HHHHHHHHHHcCchhHHH
Confidence 899999999999987654
No 9
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.76 E-value=1.4e-18 Score=142.73 Aligned_cols=161 Identities=22% Similarity=0.393 Sum_probs=81.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..++.+|||||||||.++..++++. |+.+++++|+ +.+++.|++ ...+|+++.+|..+ |++ .||+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 4567899999999999999999875 6789999999 999999874 13589999999988 776 499999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh--h--hcC------------Ce
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV--S--LFR------------GK 244 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~--~~~------------~~ 244 (279)
.+|+++|. .+.|++++++|| |||+++|+|...+....... ....++...+- . ..+ ..
T Consensus 125 glrn~~d~--~~~l~E~~RVLk---PGG~l~ile~~~p~~~~~~~--~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~ 197 (233)
T PF01209_consen 125 GLRNFPDR--ERALREMYRVLK---PGGRLVILEFSKPRNPLLRA--LYKFYFKYILPLIGRLLSGDREAYRYLPESIRR 197 (233)
T ss_dssp -GGG-SSH--HHHHHHHHHHEE---EEEEEEEEEEEB-SSHHHHH--HHHH-----------------------------
T ss_pred hHHhhCCH--HHHHHHHHHHcC---CCeEEEEeeccCCCCchhhc--eeeeeeccccccccccccccccccccccccccc
Confidence 99999885 478999999999 79999999998776421100 00011110000 0 000 11
Q ss_pred eCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEe
Q 023625 245 ERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAY 278 (279)
Q Consensus 245 ~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~ 278 (279)
..+.+++.++++++||+.++..++. |..++..++
T Consensus 198 f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~ 232 (233)
T PF01209_consen 198 FPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGT 232 (233)
T ss_dssp -----------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccC
Confidence 2278999999999999998887764 555665554
No 10
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.75 E-value=5.4e-17 Score=134.17 Aligned_cols=162 Identities=20% Similarity=0.282 Sum_probs=118.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..+..+|||+|||+|.++..+++.. |..+++++|+ +.+++.+++ ..++++++.+|..+ +.+ .+|+|++..
T Consensus 43 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 122 (231)
T TIGR02752 43 VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGF 122 (231)
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence 4567899999999999999999986 6789999999 888877763 12589999999877 544 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch----------------hhhhhcCCe
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI----------------LMVSLFRGK 244 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~----------------~~~~~~~~~ 244 (279)
++|++++. .++|+++.++|+ |||++++.+...+....... ....++.. ..+......
T Consensus 123 ~l~~~~~~--~~~l~~~~~~Lk---~gG~l~~~~~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 195 (231)
T TIGR02752 123 GLRNVPDY--MQVLREMYRVVK---PGGKVVCLETSQPTIPGFKQ--LYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRD 195 (231)
T ss_pred ccccCCCH--HHHHHHHHHHcC---cCeEEEEEECCCCCChHHHH--HHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHH
Confidence 99988765 578999999999 79999988865433211000 00000000 000000112
Q ss_pred eCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEeC
Q 023625 245 ERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAYP 279 (279)
Q Consensus 245 ~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 279 (279)
..+.++++++++++||+++++.... +..+++.++|
T Consensus 196 ~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 196 FPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred cCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 3478999999999999999998886 7778888875
No 11
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.72 E-value=3.5e-16 Score=131.16 Aligned_cols=155 Identities=14% Similarity=0.185 Sum_probs=108.9
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CCccceee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IPQANAVL 177 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~v~ 177 (279)
..+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.+++. +++++.+|+.+. .+.||+|+
T Consensus 19 ~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~~~~~~fD~v~ 94 (255)
T PRK14103 19 YDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVDARTGDVRDWKPKPDTDVVV 94 (255)
T ss_pred HHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCcEEEcChhhCCCCCCceEEE
Confidence 34555554 45678999999999999999999999999999999 8999988763 688999998762 23699999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhh----hhhcch-h-hhhhcCCeeCCHHHH
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMET----QLCFDI-L-MVSLFRGKERSVDDW 251 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~----~~~~d~-~-~~~~~~~~~r~~~e~ 251 (279)
+..++|++++. .++|++++++|+ |||++++....... ......... ..+... . +....+....+.+++
T Consensus 95 ~~~~l~~~~d~--~~~l~~~~~~Lk---pgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 168 (255)
T PRK14103 95 SNAALQWVPEH--ADLLVRWVDELA---PGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGY 168 (255)
T ss_pred EehhhhhCCCH--HHHHHHHHHhCC---CCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHH
Confidence 99999988765 578999999999 79998886321101 000000000 001000 0 000011234589999
Q ss_pred HHHHHHCCCceeEE
Q 023625 252 KKLFLAAGFSHYKI 265 (279)
Q Consensus 252 ~~ll~~aGf~~~~~ 265 (279)
.++|+++||++...
T Consensus 169 ~~~l~~aGf~v~~~ 182 (255)
T PRK14103 169 AELLTDAGCKVDAW 182 (255)
T ss_pred HHHHHhCCCeEEEE
Confidence 99999999985433
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=99.71 E-value=5.2e-16 Score=135.05 Aligned_cols=152 Identities=18% Similarity=0.233 Sum_probs=110.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
.+..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++ ..++++|+.+|+.+ +++ .||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456899999999999999999987 679999999 888876653 24689999999987 554 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc-hhh-hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK-ESM-ETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~-~~~-~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
+|++++. .+++++++++|+ |||++++.+.......... ... .....++........-...+.++|.++++++|
T Consensus 196 ~~h~~d~--~~~l~e~~rvLk---pGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aG 270 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAA---PGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLG 270 (340)
T ss_pred hhccCCH--HHHHHHHHHHcC---CCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCC
Confidence 9999875 588999999999 7999999886543321110 000 00000110000000112247899999999999
Q ss_pred CceeEEEecC
Q 023625 260 FSHYKITPML 269 (279)
Q Consensus 260 f~~~~~~~~~ 269 (279)
|..+++.+..
T Consensus 271 f~~v~~~d~s 280 (340)
T PLN02244 271 LQDIKTEDWS 280 (340)
T ss_pred CCeeEeeeCc
Confidence 9999887654
No 13
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.70 E-value=3.4e-16 Score=134.56 Aligned_cols=141 Identities=21% Similarity=0.330 Sum_probs=110.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCC--ccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIP--QANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~ 185 (279)
.+..+|||||||+|.++..+++..+..+++++|. +.+++.+++. ..+++++.+|+.+ +.+ .||+|++..++|++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhC
Confidence 3567999999999999999999988889999999 8888888753 3578999999887 544 49999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
++.+ .+|++++++|+ |||++++++...++.. ......+..+ ...+.+|+.++++++||+.+++
T Consensus 192 ~d~~--~~L~e~~rvLk---PGG~LvIi~~~~p~~~------~~r~~~~~~~------~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 192 PDPQ--RGIKEAYRVLK---IGGKACLIGPVHPTFW------LSRFFADVWM------LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred CCHH--HHHHHHHHhcC---CCcEEEEEEecCcchh------HHHHhhhhhc------cCCCHHHHHHHHHHCCCeEEEE
Confidence 8865 68999999999 7999998876543210 0011112111 1247899999999999999998
Q ss_pred EecC
Q 023625 266 TPML 269 (279)
Q Consensus 266 ~~~~ 269 (279)
.++.
T Consensus 255 ~~i~ 258 (340)
T PLN02490 255 KRIG 258 (340)
T ss_pred EEcC
Confidence 8764
No 14
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=1.3e-15 Score=138.80 Aligned_cols=150 Identities=16% Similarity=0.217 Sum_probs=114.7
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccc
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QAN 174 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D 174 (279)
+++.+. ..+..+|||||||+|..+..+++.+ +++++++|+ +.+++.|+. ...+++|+.+|+.+ +.+ .||
T Consensus 258 l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 334 (475)
T PLN02336 258 FVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD 334 (475)
T ss_pred HHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence 455444 4567899999999999999999876 779999999 888887753 34589999999987 554 499
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++..+++++++. .++|++++++|+ |||++++.+.......... . .... ....+....+.+++.++
T Consensus 335 ~I~s~~~l~h~~d~--~~~l~~~~r~Lk---pgG~l~i~~~~~~~~~~~~---~---~~~~--~~~~g~~~~~~~~~~~~ 401 (475)
T PLN02336 335 VIYSRDTILHIQDK--PALFRSFFKWLK---PGGKVLISDYCRSPGTPSP---E---FAEY--IKQRGYDLHDVQAYGQM 401 (475)
T ss_pred EEEECCcccccCCH--HHHHHHHHHHcC---CCeEEEEEEeccCCCCCcH---H---HHHH--HHhcCCCCCCHHHHHHH
Confidence 99999999988875 488999999999 7999999987665432221 1 1011 11123456689999999
Q ss_pred HHHCCCceeEEEec
Q 023625 255 FLAAGFSHYKITPM 268 (279)
Q Consensus 255 l~~aGf~~~~~~~~ 268 (279)
++++||+++++.+.
T Consensus 402 l~~aGF~~i~~~d~ 415 (475)
T PLN02336 402 LKDAGFDDVIAEDR 415 (475)
T ss_pred HHHCCCeeeeeecc
Confidence 99999999877654
No 15
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.68 E-value=4e-16 Score=114.13 Aligned_cols=99 Identities=22% Similarity=0.443 Sum_probs=84.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCC-CC-C-CCccceeeehh-h
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNM-FE-A-IPQANAVLLKW-I 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~-~~-~-~~~~D~v~~~~-v 181 (279)
+..+|||||||+|.++..+++.+|..+++++|+ |.+++.+++ ..++++++.+|+ .. + .+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 357999999999999999999999999999999 889988774 358999999999 33 2 33699999999 6
Q ss_pred hccCCh-hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWND-EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+|++.+ ++..++|+++++.|+ |||+++|.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~---pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLK---PGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcC---CCcEEEEEE
Confidence 664443 678899999999999 799998865
No 16
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.67 E-value=1.5e-15 Score=124.98 Aligned_cols=137 Identities=14% Similarity=0.228 Sum_probs=107.4
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhccC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNW 185 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~ 185 (279)
++|||||||+|..+..+++.+|+++++++|+ +.+++.++. ..++++++.+|+.+ +.+ .||+|++..++|++
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 4799999999999999999999999999999 777777663 35689999999976 444 59999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
++. ..+|++++++|+ |||.+++.+...+..... . .... .....+..+|.++++++||++++.
T Consensus 81 ~~~--~~~l~~~~~~Lk---pgG~l~i~~~~~~~~~~~----~-~~~~--------~~~~~s~~~~~~~l~~~Gf~~~~~ 142 (224)
T smart00828 81 KDK--MDLFSNISRHLK---DGGHLVLADFIANLLSAI----E-HEET--------TSYLVTREEWAELLARNNLRVVEG 142 (224)
T ss_pred CCH--HHHHHHHHHHcC---CCCEEEEEEcccccCccc----c-cccc--------ccccCCHHHHHHHHHHCCCeEEEe
Confidence 764 589999999999 799999988753321100 0 0000 011347899999999999999988
Q ss_pred EecC
Q 023625 266 TPML 269 (279)
Q Consensus 266 ~~~~ 269 (279)
.+..
T Consensus 143 ~~~~ 146 (224)
T smart00828 143 VDAS 146 (224)
T ss_pred EECc
Confidence 7764
No 17
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.67 E-value=4.8e-15 Score=123.02 Aligned_cols=160 Identities=19% Similarity=0.292 Sum_probs=118.1
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
.+..+|||+|||+|.++..+++.+| ..+++++|+ +.+++.+++. ..++.+..+|+.+ +.+ .+|+|++..
T Consensus 50 ~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~ 129 (239)
T PRK00216 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAF 129 (239)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEec
Confidence 3568999999999999999999998 789999999 7787777642 3578999999987 433 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh-----hhcC------------C
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV-----SLFR------------G 243 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~------------~ 243 (279)
++|++++. ..+|+++.++|+ |||.+++++...+...... .........++ ...+ .
T Consensus 130 ~l~~~~~~--~~~l~~~~~~L~---~gG~li~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (239)
T PRK00216 130 GLRNVPDI--DKALREMYRVLK---PGGRLVILEFSKPTNPPLK---KAYDFYLFKVLPLIGKLISKNAEAYSYLAESIR 201 (239)
T ss_pred ccccCCCH--HHHHHHHHHhcc---CCcEEEEEEecCCCchHHH---HHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHH
Confidence 99988764 578999999999 7999999987665432110 00000000000 0000 1
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEecC-CceeEEEEeC
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPML-GVRSLIEAYP 279 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 279 (279)
..++.++|.++++++||+.+++.... +..+++.+++
T Consensus 202 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 202 AFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred hCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEec
Confidence 23478899999999999999998864 7778887764
No 18
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.67 E-value=3e-15 Score=129.06 Aligned_cols=146 Identities=16% Similarity=0.168 Sum_probs=105.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc------cCCCCeEEeeCCCCC-CCC-ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ------GTNDNLDFLGGNMFE-AIP-QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh 183 (279)
.+++|||||||+|.++..+++..+. +++++|. +.++..++ ....++.++.+|+.+ +.+ .||+|++..++|
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 4589999999999999999998766 5999998 55554322 123589999999876 544 599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+..+. ..+|++++++|+ |||.+++.+.+.+........ ....+.. |. ..-..++.+++.++++++||+.+
T Consensus 201 H~~dp--~~~L~~l~~~Lk---pGG~lvl~~~~i~~~~~~~l~-p~~~y~~--~~--~~~~lps~~~l~~~L~~aGF~~i 270 (322)
T PRK15068 201 HRRSP--LDHLKQLKDQLV---PGGELVLETLVIDGDENTVLV-PGDRYAK--MR--NVYFIPSVPALKNWLERAGFKDV 270 (322)
T ss_pred ccCCH--HHHHHHHHHhcC---CCcEEEEEEEEecCCCccccC-chhHHhc--Cc--cceeCCCHHHHHHHHHHcCCceE
Confidence 88765 578999999999 799998876665543322000 0000100 00 00123488999999999999999
Q ss_pred EEEecC
Q 023625 264 KITPML 269 (279)
Q Consensus 264 ~~~~~~ 269 (279)
++....
T Consensus 271 ~~~~~~ 276 (322)
T PRK15068 271 RIVDVS 276 (322)
T ss_pred EEEeCC
Confidence 887653
No 19
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.67 E-value=4.1e-15 Score=122.10 Aligned_cols=160 Identities=19% Similarity=0.241 Sum_probs=117.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
.+..+|||+|||+|.++..+++.+|. .+++++|+ +.+++.+++ ...++++..+|+.+ +.+ .+|+|++..++|
T Consensus 38 ~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeeeC
Confidence 46789999999999999999999987 79999999 777777664 23579999999987 443 599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC-----------------CeeC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR-----------------GKER 246 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----------------~~~r 246 (279)
+.++ ...+|+++.+.|+ |||++++++...+...... .........++...+ ....
T Consensus 118 ~~~~--~~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (223)
T TIGR01934 118 NVTD--IQKALREMYRVLK---PGGRLVILEFSKPANALLK---KFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFP 189 (223)
T ss_pred Cccc--HHHHHHHHHHHcC---CCcEEEEEEecCCCchhhH---HHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCC
Confidence 8776 4588999999999 7999999887644321110 000000000000000 1123
Q ss_pred CHHHHHHHHHHCCCceeEEEecCC-ceeEEEEeC
Q 023625 247 SVDDWKKLFLAAGFSHYKITPMLG-VRSLIEAYP 279 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~~~~~~~-~~~~i~~~~ 279 (279)
+.++|.++|+++||+++++.+..+ ...++++||
T Consensus 190 ~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 190 SQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred CHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 788999999999999999998864 467888875
No 20
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.66 E-value=4.8e-15 Score=118.88 Aligned_cols=147 Identities=20% Similarity=0.299 Sum_probs=110.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC------CeEEEeeC-hhHHhhccc------C--CCCeEEeeCCCCC-CCC--cc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD------IKCTVFDL-PHVVDNLQG------T--NDNLDFLGGNMFE-AIP--QA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-~~~~~~a~~------~--~~ri~~~~~d~~~-~~~--~~ 173 (279)
....++|||+||||..+..++++-+. .++++.|+ |+++..+++ + ..++.++++|..+ |++ .+
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 34589999999999999999998877 78999999 999987763 1 3469999999998 887 49
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch---------------hhh
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI---------------LMV 238 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~---------------~~~ 238 (279)
|.|.+..-+.+|++.+ +.|++++|+|| |||++.+.|..--++..-..+. ...+++. ..+
T Consensus 179 D~yTiafGIRN~th~~--k~l~EAYRVLK---pGGrf~cLeFskv~~~~l~~fy-~~ysf~VlpvlG~~iagd~~sYqYL 252 (296)
T KOG1540|consen 179 DAYTIAFGIRNVTHIQ--KALREAYRVLK---PGGRFSCLEFSKVENEPLKWFY-DQYSFDVLPVLGEIIAGDRKSYQYL 252 (296)
T ss_pred eeEEEecceecCCCHH--HHHHHHHHhcC---CCcEEEEEEccccccHHHHHHH-HhhhhhhhchhhHhhhhhHhhhhhH
Confidence 9999999999999965 88999999999 8999999987544421110100 0111111 111
Q ss_pred hhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 239 SLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 239 ~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
+..=.+.-+.+|+..+.++|||+.+.
T Consensus 253 veSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 253 VESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 11111223889999999999999886
No 21
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.66 E-value=4e-15 Score=127.04 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=104.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc---c---CCCCeEEeeCCCCC-CC-Cccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ---G---TNDNLDFLGGNMFE-AI-PQANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~---~---~~~ri~~~~~d~~~-~~-~~~D~v~~~~vl 182 (279)
..+++|||||||+|.++..++...+. .++++|. +.++..++ . ...++.+..+++.+ +. ..||+|++..+|
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL 198 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVL 198 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchh
Confidence 34689999999999999999988664 7999998 66654432 1 23578888888765 32 369999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
|++.+. ...|++++++|+ |||.+++.+.+.+...... |........+. -...+.+++..+++++||
T Consensus 199 ~H~~dp--~~~L~el~r~Lk---pGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv-------~flpS~~~L~~~L~~aGF 266 (314)
T TIGR00452 199 YHRKSP--LEHLKQLKHQLV---IKGELVLETLVIDGDLNTVLVPKDRYAKMKNV-------YFIPSVSALKNWLEKVGF 266 (314)
T ss_pred hccCCH--HHHHHHHHHhcC---CCCEEEEEEEEecCccccccCchHHHHhcccc-------ccCCCHHHHHHHHHHCCC
Confidence 998775 578999999999 7999999877665432110 00000000011 112388999999999999
Q ss_pred ceeEEEecC
Q 023625 261 SHYKITPML 269 (279)
Q Consensus 261 ~~~~~~~~~ 269 (279)
+.+++....
T Consensus 267 ~~V~i~~~~ 275 (314)
T TIGR00452 267 ENFRILDVL 275 (314)
T ss_pred eEEEEEecc
Confidence 999887653
No 22
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.66 E-value=3.4e-15 Score=126.46 Aligned_cols=146 Identities=16% Similarity=0.313 Sum_probs=111.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..+..+|||||||+|..+..+++.. +..+++++|. +.+++.|++. .+++++..+|+.+ +.+ .||+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4678899999999999988777764 5678999999 8889888741 2589999999877 554 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++|++++. .++++++.++|+ |||++++.+......... ....+..++....+...+..++.++++++||
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lk---pGG~l~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLK---PGGRFAISDVVLRGELPE------EIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcC---CCcEEEEEEeeccCCCCH------HHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 99987764 478999999999 799999998775442111 1122233332233455688999999999999
Q ss_pred ceeEEEe
Q 023625 261 SHYKITP 267 (279)
Q Consensus 261 ~~~~~~~ 267 (279)
..+++..
T Consensus 224 ~~v~i~~ 230 (272)
T PRK11873 224 VDITIQP 230 (272)
T ss_pred CceEEEe
Confidence 9887744
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.64 E-value=6.9e-15 Score=118.42 Aligned_cols=142 Identities=15% Similarity=0.181 Sum_probs=106.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC-c
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP-Q 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~ 172 (279)
+.+++.++ ..+..+|||+|||+|..+..|+++ +.+++++|+ +.+++.+++ ...++++...|+.+ +.+ .
T Consensus 20 ~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 95 (197)
T PRK11207 20 SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGE 95 (197)
T ss_pred HHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCC
Confidence 34555554 345689999999999999999986 568999999 888887763 12458888899876 444 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~ 252 (279)
||+|++..++|++++++...++++++++|+ |||.+++++.+..+....+ . .. ....+.+|+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk---pgG~~~~~~~~~~~~~~~~---~-----~~-------~~~~~~~el~ 157 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTK---PGGYNLIVAAMDTADYPCT---V-----GF-------PFAFKEGELR 157 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcC---CCcEEEEEEEecCCCCCCC---C-----CC-------CCccCHHHHH
Confidence 999999999999998888999999999999 7999887775544322110 0 00 0123788898
Q ss_pred HHHHHCCCceeEEE
Q 023625 253 KLFLAAGFSHYKIT 266 (279)
Q Consensus 253 ~ll~~aGf~~~~~~ 266 (279)
++++ ||+++...
T Consensus 158 ~~~~--~~~~~~~~ 169 (197)
T PRK11207 158 RYYE--GWEMVKYN 169 (197)
T ss_pred HHhC--CCeEEEee
Confidence 8887 89877663
No 24
>PRK06922 hypothetical protein; Provisional
Probab=99.63 E-value=5.2e-15 Score=134.87 Aligned_cols=144 Identities=20% Similarity=0.266 Sum_probs=110.5
Q ss_pred CChhhhhhcCchHHHHHHHHhhhcchh--hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhH
Q 023625 72 KKVWDRVADEPKFKSLFYDLMITDSEL--IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHV 148 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~ 148 (279)
..+|+++..+++...+|...|...... ........++ +.+..+|||||||+|.++..+++.+|+.+++++|+ +.+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d--~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~M 454 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD--YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENV 454 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh--hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHH
Confidence 467899988888888887666542221 1111122233 44678999999999999999999999999999999 788
Q ss_pred HhhcccC----CCCeEEeeCCCCC-C--CC--ccceeeehhhhccC-----------ChhHHHHHHHHHHHhCCCCCCCc
Q 023625 149 VDNLQGT----NDNLDFLGGNMFE-A--IP--QANAVLLKWILHNW-----------NDEESVKLLKKCKEAIPSKDEGG 208 (279)
Q Consensus 149 ~~~a~~~----~~ri~~~~~d~~~-~--~~--~~D~v~~~~vlh~~-----------~~~~~~~~L~~~~~~L~~~~pgG 208 (279)
++.+++. ..+++++.+|..+ + ++ .+|+|+++.++|+| ++++..++|++++++|+ |||
T Consensus 455 Le~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK---PGG 531 (677)
T PRK06922 455 IDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK---PGG 531 (677)
T ss_pred HHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC---CCc
Confidence 8887642 3467888899865 3 33 49999999999976 34678899999999999 799
Q ss_pred EEEEEeeecCCC
Q 023625 209 KVIIIDMAIENQ 220 (279)
Q Consensus 209 ~lli~e~~~~~~ 220 (279)
++++.|.+.++.
T Consensus 532 rLII~D~v~~E~ 543 (677)
T PRK06922 532 RIIIRDGIMTED 543 (677)
T ss_pred EEEEEeCccCCc
Confidence 999999766543
No 25
>PRK08317 hypothetical protein; Provisional
Probab=99.62 E-value=1.5e-14 Score=119.90 Aligned_cols=150 Identities=19% Similarity=0.275 Sum_probs=107.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..+..+|||+|||+|.++..+++.+ |..+++++|+ +..++.+++ ...++++..+|+.. +.+ .||+|++.++
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCceEEEEech
Confidence 5667899999999999999999998 7889999999 777777654 24679999999876 443 5999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM-ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+|++++. ..+++++.++|+ |||.+++.+............. ....... .+........+..+|.++++++||
T Consensus 97 ~~~~~~~--~~~l~~~~~~L~---~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~aGf 169 (241)
T PRK08317 97 LQHLEDP--ARALAEIARVLR---PGGRVVVLDTDWDTLVWHSGDRALMRKILN--FWSDHFADPWLGRRLPGLFREAGL 169 (241)
T ss_pred hhccCCH--HHHHHHHHHHhc---CCcEEEEEecCCCceeecCCChHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHcCC
Confidence 9998875 578999999999 7999999885432211110000 0000111 111112233456789999999999
Q ss_pred ceeEEEe
Q 023625 261 SHYKITP 267 (279)
Q Consensus 261 ~~~~~~~ 267 (279)
+.+++..
T Consensus 170 ~~~~~~~ 176 (241)
T PRK08317 170 TDIEVEP 176 (241)
T ss_pred CceeEEE
Confidence 9876644
No 26
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.62 E-value=8.6e-15 Score=122.75 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=105.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--CCC--ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--AIP--QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~~--~~D~v~~~~ 180 (279)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++ ..++++++.+|+.+ +.+ .||+|++..
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 34679999999999999999987 468999999 899988774 23678999999865 222 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh--hhhhhcchh---hhhhcCCeeCCHHHHHHHH
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM--ETQLCFDIL---MVSLFRGKERSVDDWKKLF 255 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~--~~~~~~d~~---~~~~~~~~~r~~~e~~~ll 255 (279)
++|++++.. .+|+++.++|+ |||.+++............... .......+. -.........+++++.+++
T Consensus 121 vl~~~~~~~--~~l~~~~~~Lk---pgG~l~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l 195 (255)
T PRK11036 121 VLEWVADPK--SVLQTLWSVLR---PGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWL 195 (255)
T ss_pred HHHhhCCHH--HHHHHHHHHcC---CCeEEEEEEECccHHHHHHHHccChHHHHhcCccccccCCCCCCCCCHHHHHHHH
Confidence 999887764 78999999999 7999988654322100000000 000000000 0000112235789999999
Q ss_pred HHCCCceeEEEecCCce
Q 023625 256 LAAGFSHYKITPMLGVR 272 (279)
Q Consensus 256 ~~aGf~~~~~~~~~~~~ 272 (279)
+++||+++++.-+..+.
T Consensus 196 ~~aGf~~~~~~gi~~~~ 212 (255)
T PRK11036 196 EEAGWQIMGKTGVRVFH 212 (255)
T ss_pred HHCCCeEeeeeeEEEEe
Confidence 99999998776554443
No 27
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.62 E-value=4.4e-15 Score=127.29 Aligned_cols=143 Identities=10% Similarity=0.100 Sum_probs=104.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~vl 182 (279)
+..+|||||||+|.++..+++ ++.+++++|. +.+++.|+. ...+++++.+|+.+ +.+ .||+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 456999999999999998886 4679999999 888888873 12479999999866 433 59999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh--hhcC----CeeCCHHHHHHHHH
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV--SLFR----GKERSVDDWKKLFL 256 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~--~~~~----~~~r~~~e~~~ll~ 256 (279)
|++.+.+ .+|++++++|+ |||.+++......... . ........... ...+ .+..+++|+.++++
T Consensus 209 eHv~d~~--~~L~~l~r~Lk---PGG~liist~nr~~~~----~-~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~ 278 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTI---PNGATVLSTINRTMRA----Y-ASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQ 278 (322)
T ss_pred HhcCCHH--HHHHHHHHHcC---CCcEEEEEECCcCHHH----H-HHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHH
Confidence 9998864 78999999999 7999998764321100 0 00000000000 1111 23569999999999
Q ss_pred HCCCceeEEEe
Q 023625 257 AAGFSHYKITP 267 (279)
Q Consensus 257 ~aGf~~~~~~~ 267 (279)
++||++.++.-
T Consensus 279 ~aGf~i~~~~G 289 (322)
T PLN02396 279 RASVDVKEMAG 289 (322)
T ss_pred HcCCeEEEEee
Confidence 99999988843
No 28
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.61 E-value=3.8e-14 Score=119.10 Aligned_cols=106 Identities=14% Similarity=0.253 Sum_probs=90.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CCccceee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IPQANAVL 177 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~v~ 177 (279)
..++..++ ..+..+|||||||+|.++..+++.+|..+++++|+ +.+++.+++...+++++.+|+.+. ...||+|+
T Consensus 21 ~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 21 RDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 45666554 56678999999999999999999999999999999 899998887657899999998762 23699999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+..++|..++. .++|++++++|+ |||.+++.
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lk---pgG~~~~~ 129 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLA---PGGVLAVQ 129 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcC---CCcEEEEE
Confidence 99999988764 588999999999 79998875
No 29
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.61 E-value=9.9e-15 Score=113.58 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=96.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCCccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIPQANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~v~~~~vlh~~~ 186 (279)
..+..+|||||||+|.++..+.+... +++++|+ +.+++. ..+.....+... +...||+|++..+||+++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~-----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK-----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH-----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh-----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcc
Confidence 45678999999999999999976633 9999999 777766 122222222112 233699999999999999
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh--cCCeeCCHHHHHHHHHHCCCceeE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL--FRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
+ ...+|+++++.|+ |||.+++.+....... + .......+... .....++.++|+++++++||++++
T Consensus 93 d--~~~~l~~l~~~Lk---pgG~l~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 93 D--PEEFLKELSRLLK---PGGYLVISDPNRDDPS---P----RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp H--HHHHHHHHHHCEE---EEEEEEEEEEBTTSHH---H----HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred c--HHHHHHHHHHhcC---CCCEEEEEEcCCcchh---h----hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 6 5689999999999 7999999887653310 0 01111111111 234667999999999999999875
No 30
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.60 E-value=2.5e-15 Score=116.12 Aligned_cols=136 Identities=23% Similarity=0.421 Sum_probs=100.5
Q ss_pred CCCEEEEecCCccHHHHHHH-HHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C--C-Cccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIA-TAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A--I-PQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~--~-~~~D~v~~~~v 181 (279)
...+|||+|||+|.++..++ +.+|..+++++|+ +.+++.|+. ..++++|..+|+.+ + . ..||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 46799999999999999999 5688999999999 999998875 23589999999998 5 3 36999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh--c-CCeeCCHHHHHHHHHHC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL--F-RGKERSVDDWKKLFLAA 258 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~--~-~~~~r~~~e~~~ll~~a 258 (279)
+|++++.. .+|+++.++|+ ++|.+++.+......... .... ...+.+... . .+. +.++|..+|++|
T Consensus 83 l~~~~~~~--~~l~~~~~~lk---~~G~~i~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~a 151 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLK---PGGILIISDPNHNDELPE-QLEE---LMNLYSEVWSMIYIGN--DKEEWKYILEEA 151 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEE---EEEEEEEEEEEHSHHHHH-HHHH---HHHHHHHHHHHCC-----CCCGHHHHHHHT
T ss_pred hhhccCHH--HHHHHHHHHcC---CCcEEEEEECChHHHHHH-HHHH---HHHHHHHHhhhhhccc--CHHHHHHHHHhc
Confidence 99888864 78999999999 799999988773221100 0000 001111111 0 122 778999999999
Q ss_pred C
Q 023625 259 G 259 (279)
Q Consensus 259 G 259 (279)
|
T Consensus 152 g 152 (152)
T PF13847_consen 152 G 152 (152)
T ss_dssp T
T ss_pred C
Confidence 8
No 31
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.60 E-value=3.9e-14 Score=116.15 Aligned_cols=181 Identities=11% Similarity=0.074 Sum_probs=115.3
Q ss_pred hhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc
Q 023625 76 DRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG 154 (279)
Q Consensus 76 ~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 154 (279)
+.+..++.....+...|..........+++.++....+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~ 95 (219)
T TIGR02021 18 ARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARN 95 (219)
T ss_pred HHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence 33333333334444444332233333344433311235789999999999999999886 458999999 888888764
Q ss_pred C------CCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh
Q 023625 155 T------NDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME 228 (279)
Q Consensus 155 ~------~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~ 228 (279)
. .+++++..+|+.+....||+|++..+++++++++..++++++.+.++ +++ ++.+. +... . . .
T Consensus 96 ~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~---~~~-~i~~~---~~~~-~--~-~ 164 (219)
T TIGR02021 96 RAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTK---ERV-IFTFA---PKTA-W--L-A 164 (219)
T ss_pred HHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhC---CCE-EEEEC---CCch-H--H-H
Confidence 1 24899999998774367999999999998988888899999999888 343 33321 1110 0 0 0
Q ss_pred hhhhcchhhhh---hcCCeeCCHHHHHHHHHHCCCceeEEEecC
Q 023625 229 TQLCFDILMVS---LFRGKERSVDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 229 ~~~~~d~~~~~---~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
........+.. ...-..++.+++.++++++||+++......
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 165 FLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 00000000000 011233589999999999999999887554
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.60 E-value=9.8e-15 Score=122.63 Aligned_cols=160 Identities=11% Similarity=0.134 Sum_probs=109.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 173 (279)
..+++.+. +.++.+|||||||-|.++..+++++ +++++++.+ ++..+.+++ +.+++++...|+.+-.+.|
T Consensus 52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 34566665 7889999999999999999999998 899999999 666666542 4679999999987633479
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh-hcCCeeCCHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS-LFRGKERSVDDWK 252 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~r~~~e~~ 252 (279)
|.|++..++.+..++....+++++.+.|+ |||++++......+..... ......+...-. ..+|...+.+++.
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk---pgG~~~lq~i~~~~~~~~~---~~~~~~~~i~kyiFPgg~lps~~~~~ 202 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLK---PGGRLVLQTITHRDPPYHA---ERRSSSDFIRKYIFPGGYLPSLSEIL 202 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSE---TTEEEEEEEEEE--HHHHH---CTTCCCHHHHHHTSTTS---BHHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcC---CCcEEEEEecccccccchh---hcCCCceEEEEeeCCCCCCCCHHHHH
Confidence 99999999999998888999999999999 7999998777765532110 000001111111 2356667899999
Q ss_pred HHHHHCCCceeEEEecC
Q 023625 253 KLFLAAGFSHYKITPML 269 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~~ 269 (279)
..++++||++.++...+
T Consensus 203 ~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 203 RAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHTT-EEEEEEE-H
T ss_pred HHHhcCCEEEEEEEEcC
Confidence 99999999998887654
No 33
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.58 E-value=4.5e-14 Score=113.49 Aligned_cols=141 Identities=11% Similarity=0.113 Sum_probs=102.1
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D 174 (279)
.+.+.+. ..+..+|||+|||+|..+..++++ +.+++++|+ +.+++.+++ ..-++.+...|+.. +.+ .||
T Consensus 21 ~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 21 AVREAVK--TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCC
Confidence 3444444 334579999999999999999986 568999999 888887653 11246777778755 333 599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
+|++..++|++++++...++++++++|+ |||++++++....+....++ .. ....+++|+.++
T Consensus 97 ~I~~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~lli~~~~~~~~~~~~~--------~~-------~~~~~~~el~~~ 158 (195)
T TIGR00477 97 FIFSTVVFMFLQAGRVPEIIANMQAHTR---PGGYNLIVAAMDTADYPCHM--------PF-------SFTFKEDELRQY 158 (195)
T ss_pred EEEEecccccCCHHHHHHHHHHHHHHhC---CCcEEEEEEecccCCCCCCC--------Cc-------CccCCHHHHHHH
Confidence 9999999999988888899999999999 79998887755433211100 00 112378899988
Q ss_pred HHHCCCceeEEE
Q 023625 255 FLAAGFSHYKIT 266 (279)
Q Consensus 255 l~~aGf~~~~~~ 266 (279)
|+ +|+++...
T Consensus 159 f~--~~~~~~~~ 168 (195)
T TIGR00477 159 YA--DWELLKYN 168 (195)
T ss_pred hC--CCeEEEee
Confidence 86 47777665
No 34
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.57 E-value=6.4e-14 Score=116.22 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=125.2
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCcc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~ 173 (279)
..+++.+. +.++.+|||||||-|.+++..+++| +.+++++++ ++..+.+++ ..+++++...|..+..+.|
T Consensus 62 ~~~~~kl~--L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~f 138 (283)
T COG2230 62 DLILEKLG--LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPF 138 (283)
T ss_pred HHHHHhcC--CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccccccc
Confidence 44666665 8899999999999999999999999 899999999 777776653 4568999999988754559
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHH
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKK 253 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ 253 (279)
|-|++..+++++..+.-...++++++.|+ |||++++.....++.... ....+..-+ ...+|...+..++.+
T Consensus 139 DrIvSvgmfEhvg~~~~~~ff~~~~~~L~---~~G~~llh~I~~~~~~~~----~~~~~i~~y--iFPgG~lPs~~~i~~ 209 (283)
T COG2230 139 DRIVSVGMFEHVGKENYDDFFKKVYALLK---PGGRMLLHSITGPDQEFR----RFPDFIDKY--IFPGGELPSISEILE 209 (283)
T ss_pred ceeeehhhHHHhCcccHHHHHHHHHhhcC---CCceEEEEEecCCCcccc----cchHHHHHh--CCCCCcCCCHHHHHH
Confidence 99999999999999999999999999999 799999988877664431 001111111 123577778999999
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
..+++||.+.+....+
T Consensus 210 ~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 210 LASEAGFVVLDVESLR 225 (283)
T ss_pred HHHhcCcEEehHhhhc
Confidence 9999999988776554
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.56 E-value=6.2e-14 Score=109.87 Aligned_cols=164 Identities=15% Similarity=0.216 Sum_probs=119.5
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CCccceee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IPQANAVL 177 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~~~D~v~ 177 (279)
..++..++ .....+|+|+|||+|..+..|++++|..+++++|. +.|++.|++...+++|..+|+.+- -+..|+++
T Consensus 20 ~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf 97 (257)
T COG4106 20 RDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF 97 (257)
T ss_pred HHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence 45666676 67788999999999999999999999999999999 999999987668999999999873 34699999
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh----hhhhc------CCeeCC
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL----MVSLF------RGKERS 247 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~----~~~~~------~~~~r~ 247 (279)
...+||-++|. .++|.++...|. |||.|.+. .+++-..+.+ ..+.+.. .-... ....-+
T Consensus 98 aNAvlqWlpdH--~~ll~rL~~~L~---Pgg~LAVQ---mPdN~depsH---~~mr~~A~~~p~~~~l~~~~~~r~~v~s 166 (257)
T COG4106 98 ANAVLQWLPDH--PELLPRLVSQLA---PGGVLAVQ---MPDNLDEPSH---RLMRETADEAPFAQELGGRGLTRAPLPS 166 (257)
T ss_pred hhhhhhhcccc--HHHHHHHHHhhC---CCceEEEE---CCCccCchhH---HHHHHHHhcCchhhhhCccccccCCCCC
Confidence 99999977775 688999999999 79987764 3333333211 1111110 00011 123348
Q ss_pred HHHHHHHHHHCCCceeEEE------ecCCceeEEEEe
Q 023625 248 VDDWKKLFLAAGFSHYKIT------PMLGVRSLIEAY 278 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~------~~~~~~~~i~~~ 278 (279)
...|-++|...+-++ +++ ++++..+||+..
T Consensus 167 ~a~Yy~lLa~~~~rv-DiW~T~Y~h~l~~a~aIvdWv 202 (257)
T COG4106 167 PAAYYELLAPLACRV-DIWHTTYYHQLPGADAIVDWV 202 (257)
T ss_pred HHHHHHHhCccccee-eeeeeeccccCCCccchhhhe
Confidence 899999999887553 343 335566776643
No 36
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.56 E-value=5.9e-14 Score=113.35 Aligned_cols=104 Identities=13% Similarity=0.219 Sum_probs=89.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC--ccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~~~~ 187 (279)
.++..+|||||||+|..+..+++..|..+++++|+ +.+++.|++...++++..+|+.++.+ .||+|++..+||++++
T Consensus 41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p 120 (204)
T TIGR03587 41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINP 120 (204)
T ss_pred cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCH
Confidence 34667999999999999999999889999999999 89999998744678899999887654 5999999999999998
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
++..++++++.++++ +.++|.|...+.
T Consensus 121 ~~~~~~l~el~r~~~-----~~v~i~e~~~~~ 147 (204)
T TIGR03587 121 DNLPTAYRELYRCSN-----RYILIAEYYNPS 147 (204)
T ss_pred HHHHHHHHHHHhhcC-----cEEEEEEeeCCC
Confidence 888999999999976 688888875443
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.55 E-value=7.1e-14 Score=115.59 Aligned_cols=145 Identities=18% Similarity=0.172 Sum_probs=101.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHH----CCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CC--Cccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATA----FPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AI--PQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~--~~~D~v~~~~v 181 (279)
.+..+|||||||+|.++..|++. .|+.+++++|+ +.+++.|++. ..++++...+... +. ..||+|++..+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999988764 45679999999 9999888753 2356666554432 22 25999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh------hhcC-----CeeCCHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV------SLFR-----GKERSVDD 250 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~------~~~~-----~~~r~~~e 250 (279)
+|++++++..++|++++++++ |.+++.+...+... .......... .... .+.++.+|
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~-----~~~~i~dl~~~~~~-------~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~e 206 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALAR-----RLVLHNDLIRSRLA-------YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAE 206 (232)
T ss_pred eecCChHHHHHHHHHHHHhcC-----eeEEEeccccCHHH-------HHHHHHHHHHhccCceeeccchHHHHhhcCHHH
Confidence 999999888899999999988 56666655443210 0000000000 0000 23459999
Q ss_pred HHHHHHHCCCceeEEEecC
Q 023625 251 WKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~~ 269 (279)
+.+++++ ||++....+..
T Consensus 207 l~~ll~~-Gf~~~~~~~~~ 224 (232)
T PRK06202 207 LAALAPQ-GWRVERQWPFR 224 (232)
T ss_pred HHHHhhC-CCeEEecccee
Confidence 9999999 99987766543
No 38
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.55 E-value=3.3e-13 Score=106.73 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=121.0
Q ss_pred hCCCC-EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----c-CCCCe-EEeeCCCCCC---CC--------
Q 023625 111 FEGLK-SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----G-TNDNL-DFLGGNMFEA---IP-------- 171 (279)
Q Consensus 111 ~~~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~-~~~ri-~~~~~d~~~~---~~-------- 171 (279)
++... +|||||+|||..+..+++++|+++..-.|. +......+ + ..+++ .-+..|+.++ .+
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~ 101 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPE 101 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCC
Confidence 44555 499999999999999999999999888887 33322222 1 01222 1233444432 11
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc-CCeeCCHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF-RGKERSVDD 250 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~r~~~e 250 (279)
.+|+|++.+++|-.+.+.+..+++.+.++|+ |||.+++..+..-+..... .....+|..+.... ....|+.++
T Consensus 102 ~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~---~gG~L~~YGPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 102 SFDAIFCINMLHISPWSAVEGLFAGAARLLK---PGGLLFLYGPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred CcceeeehhHHHhcCHHHHHHHHHHHHHhCC---CCCEEEEeCCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 4999999999999999999999999999999 7999999988766543321 22335666665544 366789999
Q ss_pred HHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 251 WKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+.++.+++||+..+++.+|..+-++++|+
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998776666664
No 39
>PRK05785 hypothetical protein; Provisional
Probab=99.55 E-value=2.7e-13 Score=111.38 Aligned_cols=154 Identities=13% Similarity=0.152 Sum_probs=105.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~ 187 (279)
.+..+|||||||+|.++..+++.+ +.+++++|. +++++.|+.. ..++.+|+.+ |.+ .||+|++..++|+++|
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d 125 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---DDKVVGSFEALPFRDKSFDVVMSSFALHASDN 125 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---cceEEechhhCCCCCCCEEEEEecChhhccCC
Confidence 346799999999999999999987 578999999 9999998753 3467788877 655 4999999999998877
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchh--hh-hhcCC-------------eeCCHHHH
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDIL--MV-SLFRG-------------KERSVDDW 251 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~--~~-~~~~~-------------~~r~~~e~ 251 (279)
. .+.|++++++|+ | .+.++|...++....... ...++... .+ ...++ .-.+.+++
T Consensus 126 ~--~~~l~e~~RvLk---p--~~~ile~~~p~~~~~~~~--~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~ 196 (226)
T PRK05785 126 I--EKVIAEFTRVSR---K--QVGFIAMGKPDNVIKRKY--LSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFH 196 (226)
T ss_pred H--HHHHHHHHHHhc---C--ceEEEEeCCCCcHHHHHH--HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHH
Confidence 5 578999999999 6 344556544332111000 00111100 00 01111 12278999
Q ss_pred HHHHHHCCCceeEEEecC-CceeEEEEeC
Q 023625 252 KKLFLAAGFSHYKITPML-GVRSLIEAYP 279 (279)
Q Consensus 252 ~~ll~~aGf~~~~~~~~~-~~~~~i~~~~ 279 (279)
.++++++| ..++...+. |..++..++|
T Consensus 197 ~~~~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 197 REIFEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHHHHh-CceEEEEccccEEEEEEEee
Confidence 99999984 667777764 5566666653
No 40
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.54 E-value=3.2e-14 Score=100.49 Aligned_cols=89 Identities=24% Similarity=0.457 Sum_probs=75.8
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHH
Q 023625 118 VDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~ 191 (279)
||+|||+|..+..++++ +..+++++|. +.+++.+++ ...++.+..+|+.+ |++ .||+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999998 8889999999 888888875 23567799999988 665 49999999999999 4467
Q ss_pred HHHHHHHHhCCCCCCCcEEEE
Q 023625 192 KLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli 212 (279)
+++++++++|| |||+++|
T Consensus 78 ~~l~e~~rvLk---~gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLK---PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHEE---EEEEEEE
T ss_pred HHHHHHHHHcC---cCeEEeC
Confidence 99999999999 7998875
No 41
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.52 E-value=3.3e-13 Score=113.34 Aligned_cols=99 Identities=19% Similarity=0.351 Sum_probs=83.0
Q ss_pred CCCEEEEecCCccH----HHHHHHHHCC-----CCeEEEeeC-hhHHhhcccC---------------------------
Q 023625 113 GLKSLVDVAGGTGI----MARAIATAFP-----DIKCTVFDL-PHVVDNLQGT--------------------------- 155 (279)
Q Consensus 113 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~~--------------------------- 155 (279)
+..+|+|+|||+|. +++.+++..+ +.++++.|+ +.+++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5667777665 478999999 9999988752
Q ss_pred -----CCCeEEeeCCCCCC-CC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 156 -----NDNLDFLGGNMFEA-IP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 156 -----~~ri~~~~~d~~~~-~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+|+|..+|+.++ .+ .||+|+++++||++++++..+++++++++|+ |||.+++-.
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~---pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK---PGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC---CCeEEEEEC
Confidence 13789999999983 32 5999999999999999888999999999999 799988743
No 42
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.52 E-value=5.1e-13 Score=110.80 Aligned_cols=136 Identities=18% Similarity=0.299 Sum_probs=101.9
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDE 188 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~ 188 (279)
..+|||+|||+|.++..+++.+|..+++++|+ +.++..++. ..++++++.+|+.+ +.+ .||+|++.+++|+..+.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 47899999999999999999999999999999 788777764 23588999999887 433 59999999999987664
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 189 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 189 ~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
.++|+++.++|+ |||.+++.+....... . .... ....+....+.++|.++++++ |+...+.
T Consensus 115 --~~~l~~~~~~L~---~~G~l~~~~~~~~~~~------~---~~~~--~~~~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 115 --SQALSELARVLK---PGGLLAFSTFGPGTLH------E---LRQS--FGQHGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHcC---CCcEEEEEeCCccCHH------H---HHHH--HHHhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 578999999999 7999988754322110 0 0000 000123345788999999988 8766553
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.51 E-value=7.1e-15 Score=105.09 Aligned_cols=88 Identities=26% Similarity=0.474 Sum_probs=59.1
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CC---CeEEeeCCCCCC-CC-ccceeeehhhhccCC
Q 023625 118 VDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----ND---NLDFLGGNMFEA-IP-QANAVLLKWILHNWN 186 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~---ri~~~~~d~~~~-~~-~~D~v~~~~vlh~~~ 186 (279)
||||||+|.++..+++++|..+++++|+ +.+++.+++. .. ++++...|.... .+ .||+|++.+++|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 8999777751 12 345555555543 23 699999999999994
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKV 210 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~l 210 (279)
+...+|+++++.|+ |||+|
T Consensus 81 --~~~~~l~~~~~~L~---pgG~l 99 (99)
T PF08242_consen 81 --DIEAVLRNIYRLLK---PGGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-T---SS-EE
T ss_pred --hHHHHHHHHHHHcC---CCCCC
Confidence 45699999999999 79975
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.51 E-value=6.1e-13 Score=109.84 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=101.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCCccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIPQANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~ 184 (279)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.|++ ..+++.+..+|+......||+|++..++|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~ 139 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIH 139 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhc
Confidence 456799999999999999999875 45999999 888888764 125899999995434446999999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh-h-hhcCCeeCCHHHHHHHHHHCCCce
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM-V-SLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
+++++...+++++.+.++ ++.++... +..... . .......... . ........+.++|.++++++||++
T Consensus 140 ~~~~~~~~~l~~l~~~~~----~~~~i~~~---~~~~~~-~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~ 209 (230)
T PRK07580 140 YPQEDAARMLAHLASLTR----GSLIFTFA---PYTPLL-A--LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFKV 209 (230)
T ss_pred CCHHHHHHHHHHHHhhcC----CeEEEEEC---CccHHH-H--HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCce
Confidence 999999999999998766 44333321 111000 0 0000000000 0 001123458899999999999999
Q ss_pred eEEEecC
Q 023625 263 YKITPML 269 (279)
Q Consensus 263 ~~~~~~~ 269 (279)
.++....
T Consensus 210 ~~~~~~~ 216 (230)
T PRK07580 210 VRTERIS 216 (230)
T ss_pred Eeeeecc
Confidence 9887764
No 45
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.51 E-value=5.9e-13 Score=106.40 Aligned_cols=120 Identities=20% Similarity=0.347 Sum_probs=93.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC-ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP-QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh 183 (279)
..+..+|||||||+|.++..+++++|+.+++++|. +.+++.+++ ...+++++.+|...+.+ .||+|++....+
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEECCCcc
Confidence 45678999999999999999999999999999999 888887764 12578999998865444 599999876544
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
. ...+++.+.+.|+ |||++++.....+ +.+++.+++++.||+.+
T Consensus 109 ~-----~~~~l~~~~~~Lk---~gG~lv~~~~~~~----------------------------~~~~~~~~l~~~g~~~~ 152 (187)
T PRK08287 109 N-----LTAIIDWSLAHLH---PGGRLVLTFILLE----------------------------NLHSALAHLEKCGVSEL 152 (187)
T ss_pred C-----HHHHHHHHHHhcC---CCeEEEEEEecHh----------------------------hHHHHHHHHHHCCCCcc
Confidence 2 3467899999999 7998877432110 34577889999999876
Q ss_pred EEE
Q 023625 264 KIT 266 (279)
Q Consensus 264 ~~~ 266 (279)
++.
T Consensus 153 ~~~ 155 (187)
T PRK08287 153 DCV 155 (187)
T ss_pred eEE
Confidence 654
No 46
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.51 E-value=4.4e-13 Score=122.30 Aligned_cols=144 Identities=15% Similarity=0.217 Sum_probs=109.6
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC---CCC--
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE---AIP-- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~---~~~-- 171 (279)
..+++.++ ..+..+|||||||+|.++..+++.. .+++++|. +.+++.++. ..++++++.+|+.. +.+
T Consensus 27 ~~il~~l~--~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~ 102 (475)
T PLN02336 27 PEILSLLP--PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDG 102 (475)
T ss_pred hHHHhhcC--ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCC
Confidence 34455444 3456799999999999999999875 47999999 888877653 23579999999863 333
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
.||+|++..++|++++++..++|++++++|+ |||.+++.|.......... . . ......|+..+|
T Consensus 103 ~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk---~gG~l~~~d~~~~~~~~~~----~--~-------~~~~~~~~~~~~ 166 (475)
T PLN02336 103 SVDLIFSNWLLMYLSDKEVENLAERMVKWLK---VGGYIFFRESCFHQSGDSK----R--K-------NNPTHYREPRFY 166 (475)
T ss_pred CEEEEehhhhHHhCCHHHHHHHHHHHHHhcC---CCeEEEEEeccCCCCCccc----c--c-------CCCCeecChHHH
Confidence 5999999999999999888999999999999 7999999987654332110 0 0 112334578899
Q ss_pred HHHHHHCCCceeE
Q 023625 252 KKLFLAAGFSHYK 264 (279)
Q Consensus 252 ~~ll~~aGf~~~~ 264 (279)
.++|.++||....
T Consensus 167 ~~~f~~~~~~~~~ 179 (475)
T PLN02336 167 TKVFKECHTRDED 179 (475)
T ss_pred HHHHHHheeccCC
Confidence 9999999988653
No 47
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.50 E-value=5.3e-13 Score=113.77 Aligned_cols=132 Identities=17% Similarity=0.154 Sum_probs=100.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccceeeehhhhccC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNW 185 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~ 185 (279)
+..+|||+|||+|..+..+++. +.+++++|. +.+++.+++ ..-++++...|+.. +.+ .||+|++..++|++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999985 578999999 888877653 22378888888876 334 59999999999999
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
++++...+++++.++|+ |||.++++...-.+....++ .. ....+++|++++++. |+++..
T Consensus 198 ~~~~~~~~l~~~~~~Lk---pgG~~l~v~~~~~~~~~~~~--------p~-------~~~~~~~el~~~~~~--~~i~~~ 257 (287)
T PRK12335 198 NRERIPAIIKNMQEHTN---PGGYNLIVCAMDTEDYPCPM--------PF-------SFTFKEGELKDYYQD--WEIVKY 257 (287)
T ss_pred CHHHHHHHHHHHHHhcC---CCcEEEEEEecccccCCCCC--------CC-------CcccCHHHHHHHhCC--CEEEEE
Confidence 98888999999999999 79998877654433221100 00 112378899998865 887766
Q ss_pred E
Q 023625 266 T 266 (279)
Q Consensus 266 ~ 266 (279)
.
T Consensus 258 ~ 258 (287)
T PRK12335 258 N 258 (287)
T ss_pred e
Confidence 3
No 48
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.50 E-value=7.1e-13 Score=110.97 Aligned_cols=147 Identities=13% Similarity=0.165 Sum_probs=102.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--cccee
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAV 176 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v 176 (279)
..+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ +.+++.++.....+.++.+|+.+ +.+ .||+|
T Consensus 32 ~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V 107 (251)
T PRK10258 32 DALLAMLP--QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLA 107 (251)
T ss_pred HHHHHhcC--ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEE
Confidence 44455444 235679999999999999988774 578999999 99999888654456788999877 554 49999
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHH
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFL 256 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~ 256 (279)
++..++|..++. ..+|+++.++|+ |||.+++......... . ....+..+.. ........+.+++.++++
T Consensus 108 ~s~~~l~~~~d~--~~~l~~~~~~Lk---~gG~l~~~~~~~~~~~---e--l~~~~~~~~~-~~~~~~~~~~~~l~~~l~ 176 (251)
T PRK10258 108 WSNLAVQWCGNL--STALRELYRVVR---PGGVVAFTTLVQGSLP---E--LHQAWQAVDE-RPHANRFLPPDAIEQALN 176 (251)
T ss_pred EECchhhhcCCH--HHHHHHHHHHcC---CCeEEEEEeCCCCchH---H--HHHHHHHhcc-CCccccCCCHHHHHHHHH
Confidence 999999866553 588999999999 7999988765432110 0 0011100000 001123348899999999
Q ss_pred HCCCce
Q 023625 257 AAGFSH 262 (279)
Q Consensus 257 ~aGf~~ 262 (279)
..|+..
T Consensus 177 ~~~~~~ 182 (251)
T PRK10258 177 GWRYQH 182 (251)
T ss_pred hCCcee
Confidence 888764
No 49
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.49 E-value=1.6e-12 Score=103.16 Aligned_cols=133 Identities=19% Similarity=0.228 Sum_probs=103.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC-CCccceeeehhhhccCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA-IPQANAVLLKWILHNWN 186 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~~~D~v~~~~vlh~~~ 186 (279)
+..+|||+|||+|.++..+++..+ +++++|+ +.+++.+++ ...+++++.+|..+. .+.||+|++.-.+|..+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 457899999999999999999876 8999999 888887764 224688899998773 34699999988777654
Q ss_pred hh-------------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCC
Q 023625 187 DE-------------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 187 ~~-------------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
++ ...++|+++.+.|+ |||++++++.... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk---~gG~~~~~~~~~~----------------------------~ 145 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK---EGGRVQLIQSSLN----------------------------G 145 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC---CCCEEEEEEeccC----------------------------C
Confidence 32 13578999999999 7999998763221 2
Q ss_pred HHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 248 VDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
..++.+++++.||....+...+-+.--++++
T Consensus 146 ~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~ 176 (179)
T TIGR00537 146 EPDTFDKLDERGFRYEIVAERGLFFEELFAI 176 (179)
T ss_pred hHHHHHHHHhCCCeEEEEEEeecCceEEEEE
Confidence 4678899999999998888777665555554
No 50
>PRK04266 fibrillarin; Provisional
Probab=99.48 E-value=3.2e-12 Score=104.62 Aligned_cols=140 Identities=6% Similarity=0.113 Sum_probs=96.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh----cccCCCCeEEeeCCCCCC-----CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN----LQGTNDNLDFLGGNMFEA-----IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~----a~~~~~ri~~~~~d~~~~-----~~-~~D~v~~~ 179 (279)
..+..+|||+|||+|.++..+++..+..+++++|+ +.+++. ++.. .++.++.+|...+ .+ .+|+|+.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~-~nv~~i~~D~~~~~~~~~l~~~~D~i~~- 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER-KNIIPILADARKPERYAHVVEKVDVIYQ- 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc-CCcEEEECCCCCcchhhhccccCCEEEE-
Confidence 56788999999999999999999987668999999 766653 3333 6789999998653 12 4898874
Q ss_pred hhhccCChh-HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 180 WILHNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 180 ~vlh~~~~~-~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
+.+++ +...+|++++++|+ |||+++|.=...+-+....+ .+..++..++++++
T Consensus 148 ----d~~~p~~~~~~L~~~~r~LK---pGG~lvI~v~~~~~d~~~~~-------------------~~~~~~~~~~l~~a 201 (226)
T PRK04266 148 ----DVAQPNQAEIAIDNAEFFLK---DGGYLLLAIKARSIDVTKDP-------------------KEIFKEEIRKLEEG 201 (226)
T ss_pred ----CCCChhHHHHHHHHHHHhcC---CCcEEEEEEecccccCcCCH-------------------HHHHHHHHHHHHHc
Confidence 33333 33457899999999 79999984211110000000 01224456999999
Q ss_pred CCceeEEEecCCc---eeEEEEe
Q 023625 259 GFSHYKITPMLGV---RSLIEAY 278 (279)
Q Consensus 259 Gf~~~~~~~~~~~---~~~i~~~ 278 (279)
||+.++...+... +.++.++
T Consensus 202 GF~~i~~~~l~p~~~~h~~~v~~ 224 (226)
T PRK04266 202 GFEILEVVDLEPYHKDHAAVVAR 224 (226)
T ss_pred CCeEEEEEcCCCCcCCeEEEEEE
Confidence 9999999887644 4444443
No 51
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.47 E-value=2e-12 Score=104.99 Aligned_cols=132 Identities=12% Similarity=0.160 Sum_probs=100.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCC-C---
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFE-A--- 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~--- 169 (279)
++..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ...++++..+|+++ +
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45679999999999999999986 678999999 777776421 12479999999998 3
Q ss_pred CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHH
Q 023625 170 IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVD 249 (279)
Q Consensus 170 ~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~ 249 (279)
.+.||.|+-+.++|+++++.....++++.++|+ |||+++++....+......| -...+.+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk---pgG~~ll~~~~~~~~~~~gp-----------------p~~~~~~ 170 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLP---PGARQLLITLDYDQSEMAGP-----------------PFSVSPA 170 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcC---CCCeEEEEEEEcCCCCCCCc-----------------CCCCCHH
Confidence 235999999999999999999999999999999 79988877665533211101 0113888
Q ss_pred HHHHHHHHCCCceeEEE
Q 023625 250 DWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~ 266 (279)
|++++|+. +|.+..+.
T Consensus 171 eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 171 EVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHhcC-CceEEEEe
Confidence 99998874 45555443
No 52
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.47 E-value=1.2e-13 Score=99.12 Aligned_cols=89 Identities=24% Similarity=0.443 Sum_probs=74.2
Q ss_pred EEEecCCccHHHHHHHHHC---CCCeEEEeeC-hhHHhhcccC----CCCeEEeeCCCCC-CC--Cccceeeeh-hhhcc
Q 023625 117 LVDVAGGTGIMARAIATAF---PDIKCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFE-AI--PQANAVLLK-WILHN 184 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~-~~--~~~D~v~~~-~vlh~ 184 (279)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++. ..+++++.+|+.+ +. +.||+|++. .++|+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 9999888752 2589999999987 43 369999995 55999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCc
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGG 208 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG 208 (279)
+++++..++|+++.+.++ |||
T Consensus 81 ~~~~~~~~ll~~~~~~l~---pgG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLR---PGG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEE---EEE
T ss_pred CCHHHHHHHHHHHHHHhC---CCC
Confidence 999999999999999999 676
No 53
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.47 E-value=3.5e-13 Score=107.12 Aligned_cols=142 Identities=18% Similarity=0.336 Sum_probs=100.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-C---CCCe-EEeeCCCCC--CCC-ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-T---NDNL-DFLGGNMFE--AIP-QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~---~~ri-~~~~~d~~~--~~~-~~D~v~~~~vlh 183 (279)
+..+.||.|+|.|..+..++...- -++-++|. +..++.|++ . ..++ ++.+.-+.+ |.+ .||+||+.+++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 467999999999999998876542 36788888 888888884 1 1343 455444443 443 599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+++|++.+++|++|+++|+ |+|.|+|=|.+...... .+|- ..++-.|+.+.|+++|++||++++
T Consensus 134 hLTD~dlv~fL~RCk~~L~---~~G~IvvKEN~~~~~~~---------~~D~----~DsSvTRs~~~~~~lF~~AGl~~v 197 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALK---PNGVIVVKENVSSSGFD---------EFDE----EDSSVTRSDEHFRELFKQAGLRLV 197 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEE---EEEEEEEEEEEESSSEE---------EEET----TTTEEEEEHHHHHHHHHHCT-EEE
T ss_pred cCCHHHHHHHHHHHHHhCc---CCcEEEEEecCCCCCCc---------ccCC----ccCeeecCHHHHHHHHHHcCCEEE
Confidence 9999999999999999999 79999998988764310 1111 234567899999999999999999
Q ss_pred EEEecCCc
Q 023625 264 KITPMLGV 271 (279)
Q Consensus 264 ~~~~~~~~ 271 (279)
.....+++
T Consensus 198 ~~~~Q~~f 205 (218)
T PF05891_consen 198 KEEKQKGF 205 (218)
T ss_dssp EEEE-TT-
T ss_pred EeccccCC
Confidence 87665443
No 54
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.46 E-value=2e-12 Score=107.54 Aligned_cols=144 Identities=14% Similarity=0.135 Sum_probs=98.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhc---cc---CCCCeEEeeCCCCC-C-CCccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNL---QG---TNDNLDFLGGNMFE-A-IPQANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a---~~---~~~ri~~~~~d~~~-~-~~~~D~v~~~~vlh 183 (279)
.+++|||||||+|.++..++++.+. .++++|. +....+. +. ...++.+.+.-+.. + ...||+|++..||+
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 4689999999999999999999765 6999996 4333322 22 22334444333333 2 23599999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCc--hhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDK--ESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
|..++ ...|+.+++.|+ |||.+++-..+++...... |...++.+.+. --.-+...+..|++++||+
T Consensus 194 Hrr~P--l~~L~~Lk~~L~---~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv-------~FiPs~~~L~~wl~r~gF~ 261 (315)
T PF08003_consen 194 HRRSP--LDHLKQLKDSLR---PGGELVLETLVIDGDENTVLVPEDRYAKMRNV-------WFIPSVAALKNWLERAGFK 261 (315)
T ss_pred ccCCH--HHHHHHHHHhhC---CCCEEEEEEeeecCCCceEEccCCcccCCCce-------EEeCCHHHHHHHHHHcCCc
Confidence 98876 578999999999 7998887777766544321 11111111111 1123889999999999999
Q ss_pred eeEEEecC
Q 023625 262 HYKITPML 269 (279)
Q Consensus 262 ~~~~~~~~ 269 (279)
.+++.++.
T Consensus 262 ~v~~v~~~ 269 (315)
T PF08003_consen 262 DVRCVDVS 269 (315)
T ss_pred eEEEecCc
Confidence 99997654
No 55
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.46 E-value=2.4e-12 Score=113.49 Aligned_cols=147 Identities=9% Similarity=0.058 Sum_probs=108.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCCCCCccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFEAIPQANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~ 187 (279)
..+..+|||||||+|.++..+++.+ +++++++|+ +.+++.+++. ...+++...|+.+....||+|++..++++.++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~~~~ehvg~ 243 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSVGMFEHVGP 243 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEeCchhhCCh
Confidence 5677899999999999999999876 679999999 8888887752 23578888887653346999999999999888
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
.....+++++.++|+ |||++++.+...+..... ...+.+-+. ..+|...+.+++...++ .||.+.++..
T Consensus 244 ~~~~~~l~~i~r~Lk---pGG~lvl~~i~~~~~~~~-----~~~~i~~yi--fp~g~lps~~~i~~~~~-~~~~v~d~~~ 312 (383)
T PRK11705 244 KNYRTYFEVVRRCLK---PDGLFLLHTIGSNKTDTN-----VDPWINKYI--FPNGCLPSVRQIAQASE-GLFVMEDWHN 312 (383)
T ss_pred HHHHHHHHHHHHHcC---CCcEEEEEEccCCCCCCC-----CCCCceeee--cCCCcCCCHHHHHHHHH-CCcEEEEEec
Confidence 777899999999999 799999987654432211 011221111 12345557788877755 5898887766
Q ss_pred cC
Q 023625 268 ML 269 (279)
Q Consensus 268 ~~ 269 (279)
.+
T Consensus 313 ~~ 314 (383)
T PRK11705 313 FG 314 (383)
T ss_pred Ch
Confidence 54
No 56
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.45 E-value=3.4e-13 Score=108.97 Aligned_cols=142 Identities=15% Similarity=0.185 Sum_probs=105.2
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCC----CeEEeeCCCCCCCCccceeeehhh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TND----NLDFLGGNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~----ri~~~~~d~~~~~~~~D~v~~~~v 181 (279)
+.+|||||||+|.++..|++. +.+++++|. +.+++.|++ ... |+++...|.....+.||+|++..+
T Consensus 90 g~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsev 167 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEV 167 (282)
T ss_pred CceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHH
Confidence 477999999999999999997 478999999 899988874 112 578888888776666999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcc-hhhh-hh----cCCeeCCHHHHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD-ILMV-SL----FRGKERSVDDWKKLF 255 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d-~~~~-~~----~~~~~r~~~e~~~ll 255 (279)
++|..|. ..+++.+.+.|+ |||+++|......-.... ...+++ .... +- +..+.-+++|...++
T Consensus 168 leHV~dp--~~~l~~l~~~lk---P~G~lfittinrt~lS~~-----~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l 237 (282)
T KOG1270|consen 168 LEHVKDP--QEFLNCLSALLK---PNGRLFITTINRTILSFA-----GTIFLAEIVLRIVPKGTHTWEKFINPEELTSIL 237 (282)
T ss_pred HHHHhCH--HHHHHHHHHHhC---CCCceEeeehhhhHHHhh-----ccccHHHHHHHhcCCCCcCHHHcCCHHHHHHHH
Confidence 9998775 488999999999 799999987544322111 011111 1111 11 113445899999999
Q ss_pred HHCCCceeEEEe
Q 023625 256 LAAGFSHYKITP 267 (279)
Q Consensus 256 ~~aGf~~~~~~~ 267 (279)
..+++++..+.-
T Consensus 238 ~~~~~~v~~v~G 249 (282)
T KOG1270|consen 238 NANGAQVNDVVG 249 (282)
T ss_pred HhcCcchhhhhc
Confidence 999998877653
No 57
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.43 E-value=2.7e-13 Score=108.81 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=103.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-C--CCccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-A--IPQANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~~~~D~v~~~~vlh~ 184 (279)
...+|||||||-|.++..+++.. .++++.|. ++.++.|+. ..-.+++.+....+ . ...||+|++..||+|
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEH 136 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEH 136 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHc
Confidence 57899999999999999999985 88999999 899998884 22234566665554 2 246999999999999
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhh--hhhcC----CeeCCHHHHHHHHHHC
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILM--VSLFR----GKERSVDDWKKLFLAA 258 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~--~~~~~----~~~r~~~e~~~ll~~a 258 (279)
.++++ .++++|.+.+| |||.+++......-.. . .......-+. ++--+ .+...++|+..++.++
T Consensus 137 v~dp~--~~~~~c~~lvk---P~G~lf~STinrt~ka----~-~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~ 206 (243)
T COG2227 137 VPDPE--SFLRACAKLVK---PGGILFLSTINRTLKA----Y-LLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGA 206 (243)
T ss_pred cCCHH--HHHHHHHHHcC---CCcEEEEeccccCHHH----H-HHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccC
Confidence 99986 58999999999 7998888776532210 0 0000000011 11111 3455889999999999
Q ss_pred CCceeEEEec
Q 023625 259 GFSHYKITPM 268 (279)
Q Consensus 259 Gf~~~~~~~~ 268 (279)
|+.+.+...+
T Consensus 207 ~~~~~~~~g~ 216 (243)
T COG2227 207 NLKIIDRKGL 216 (243)
T ss_pred CceEEeecce
Confidence 9998877544
No 58
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.43 E-value=1.7e-12 Score=111.02 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=95.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC----------CCCeEEeeCCCCCCCCccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----------NDNLDFLGGNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----------~~ri~~~~~d~~~~~~~~D~v~~~~v 181 (279)
+..+|||||||+|.++..+++. +.+++++|+ +.+++.+++. ..+++|..+|+.+....||+|++..+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~v 221 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDV 221 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCE
Confidence 4579999999999999999986 578999999 8888877642 13578888887543346999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc----CCeeCCHHHHHHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF----RGKERSVDDWKKLFLA 257 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~----~~~~r~~~e~~~ll~~ 257 (279)
+|+++++....+++.+.+. . + |+++|.. .+..... ........ .+... .....+++++++++++
T Consensus 222 L~H~p~~~~~~ll~~l~~l-~---~-g~liIs~--~p~~~~~---~~l~~~g~--~~~g~~~~~r~y~~s~eel~~lL~~ 289 (315)
T PLN02585 222 LIHYPQDKADGMIAHLASL-A---E-KRLIISF--APKTLYY---DILKRIGE--LFPGPSKATRAYLHAEADVERALKK 289 (315)
T ss_pred EEecCHHHHHHHHHHHHhh-c---C-CEEEEEe--CCcchHH---HHHHHHHh--hcCCCCcCceeeeCCHHHHHHHHHH
Confidence 9989988877888888754 4 2 4444422 1111000 00000000 00000 0112379999999999
Q ss_pred CCCceeEEEec
Q 023625 258 AGFSHYKITPM 268 (279)
Q Consensus 258 aGf~~~~~~~~ 268 (279)
+||++.+....
T Consensus 290 AGf~v~~~~~~ 300 (315)
T PLN02585 290 AGWKVARREMT 300 (315)
T ss_pred CCCEEEEEEEe
Confidence 99998765433
No 59
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.43 E-value=6.1e-12 Score=107.84 Aligned_cols=98 Identities=15% Similarity=0.303 Sum_probs=79.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCC--CC-cc-----ce
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEA--IP-QA-----NA 175 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~--~~-~~-----D~ 175 (279)
++..+|||+|||+|..+..|+++.+ ..+++++|+ +.+++.+++. ..++.++.+|+.+. .+ .+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 3557899999999999999999987 589999999 8888776531 23567789999763 22 22 35
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+++...+++++++++..+|++++++|+ |||.+++
T Consensus 142 ~~~gs~~~~~~~~e~~~~L~~i~~~L~---pgG~~li 175 (301)
T TIGR03438 142 FFPGSTIGNFTPEEAVAFLRRIRQLLG---PGGGLLI 175 (301)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcC---CCCEEEE
Confidence 566688999999999999999999999 7998876
No 60
>PLN03075 nicotianamine synthase; Provisional
Probab=99.42 E-value=1.6e-12 Score=109.18 Aligned_cols=98 Identities=16% Similarity=0.263 Sum_probs=80.7
Q ss_pred CCCCEEEEecCCccHHHH--HHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCCCC---Cccceeee
Q 023625 112 EGLKSLVDVAGGTGIMAR--AIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFEAI---PQANAVLL 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~---~~~D~v~~ 178 (279)
.+.++|+|||||.|-++. .+++.+|+.+++++|. +.+++.|++ ..+|++|..+|..+.. ..||+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 367899999999885433 3445689999999999 888888774 2468999999998732 36999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
. ++|+|..++-.++|+++++.|+ |||.+++-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~Lk---PGG~Lvlr 232 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMA---PGALLMLR 232 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcC---CCcEEEEe
Confidence 9 9999987777899999999999 79988763
No 61
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.41 E-value=2.4e-11 Score=96.50 Aligned_cols=118 Identities=19% Similarity=0.263 Sum_probs=90.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-CCC-ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-AIP-QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh 183 (279)
++..+|||+|||+|..+..++++.|..+++++|. +.+++.+++ ..++++++.+|+.+ +.. .||+|++...
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~-- 121 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV-- 121 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence 4478999999999999999999999999999999 888877763 12459999999877 323 5999998652
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
.....+++.+++.|+ |||++++++... ...++.++.+.-|+.+.
T Consensus 122 ----~~~~~~l~~~~~~Lk---pGG~lv~~~~~~-----------------------------~~~~l~~~~~~~~~~~~ 165 (187)
T PRK00107 122 ----ASLSDLVELCLPLLK---PGGRFLALKGRD-----------------------------PEEEIAELPKALGGKVE 165 (187)
T ss_pred ----cCHHHHHHHHHHhcC---CCeEEEEEeCCC-----------------------------hHHHHHHHHHhcCceEe
Confidence 124578999999999 799999874211 23456666777798877
Q ss_pred EEEe
Q 023625 264 KITP 267 (279)
Q Consensus 264 ~~~~ 267 (279)
+++.
T Consensus 166 ~~~~ 169 (187)
T PRK00107 166 EVIE 169 (187)
T ss_pred eeEE
Confidence 7654
No 62
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.40 E-value=3.1e-12 Score=99.66 Aligned_cols=150 Identities=18% Similarity=0.151 Sum_probs=104.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeE-EeeCCCCC-C-CC--ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLD-FLGGNMFE-A-IP--QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~-~~~~d~~~-~-~~--~~D~v~~~~ 180 (279)
.....||+||||||..-... .--|.++++++|. +.+.+.+.. ....++ |+.++..+ + .+ ++|+|+...
T Consensus 75 ~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~Tl 153 (252)
T KOG4300|consen 75 SGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTL 153 (252)
T ss_pred cCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEE
Confidence 34556899999999975422 2226789999999 777665542 235676 88888776 4 33 599999999
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+|- +.++.++.|+++.++|+ |||+++++|++..+....... -....+-.....+.|...|.+.| +.|++|-|
T Consensus 154 vLC--Sve~~~k~L~e~~rlLR---pgG~iifiEHva~~y~~~n~i--~q~v~ep~~~~~~dGC~ltrd~~-e~Leda~f 225 (252)
T KOG4300|consen 154 VLC--SVEDPVKQLNEVRRLLR---PGGRIIFIEHVAGEYGFWNRI--LQQVAEPLWHLESDGCVLTRDTG-ELLEDAEF 225 (252)
T ss_pred EEe--ccCCHHHHHHHHHHhcC---CCcEEEEEecccccchHHHHH--HHHHhchhhheeccceEEehhHH-HHhhhccc
Confidence 886 55567899999999999 799999999987765433110 01122222222344667777666 56789999
Q ss_pred ceeEEEecCC
Q 023625 261 SHYKITPMLG 270 (279)
Q Consensus 261 ~~~~~~~~~~ 270 (279)
+..+....+.
T Consensus 226 ~~~~~kr~~~ 235 (252)
T KOG4300|consen 226 SIDSCKRFNF 235 (252)
T ss_pred ccchhhcccC
Confidence 9887766653
No 63
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.38 E-value=1.3e-11 Score=100.61 Aligned_cols=132 Identities=11% Similarity=0.166 Sum_probs=100.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCCC----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFEA---- 169 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~~---- 169 (279)
.+..+|||+|||.|..+..|+++ +.+++++|+ +..++.+.. ...+|++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 45679999999999999999985 788999999 777776421 136799999999973
Q ss_pred CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHH
Q 023625 170 IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVD 249 (279)
Q Consensus 170 ~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~ 249 (279)
.+.||+|+-+.++|+++++...+.++.+.++|+ |||+++++....++.....|. ...+.+
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~---pgG~~~l~~~~~~~~~~~gPp-----------------~~~~~~ 173 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLP---AGCRGLLVTLDYPQEELAGPP-----------------FSVSDE 173 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC---CCCeEEEEEEEeCCccCCCCC-----------------CCCCHH
Confidence 235899999999999999999999999999999 799866665555432211110 123889
Q ss_pred HHHHHHHHCCCceeEEE
Q 023625 250 DWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~ 266 (279)
|++++++. +|.+..+.
T Consensus 174 el~~~~~~-~~~i~~~~ 189 (218)
T PRK13255 174 EVEALYAG-CFEIELLE 189 (218)
T ss_pred HHHHHhcC-CceEEEee
Confidence 99999964 26655554
No 64
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.38 E-value=1.1e-11 Score=98.29 Aligned_cols=124 Identities=20% Similarity=0.304 Sum_probs=90.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-C-CCccceeeehhhhccC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-A-IPQANAVLLKWILHNW 185 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~-~~~~D~v~~~~vlh~~ 185 (279)
..+|||||||+|..+..++...|..+++++|. +.+++.+++ . .++++++.+|+.+ + ...||+|++.. +|+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~- 120 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LAS- 120 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhC-
Confidence 67999999999999999999999999999999 777765542 1 2579999999976 3 23699998866 543
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHH---CCCce
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLA---AGFSH 262 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~---aGf~~ 262 (279)
...+++.+.+.|+ |||.+++... . . ...++..+.++ .||..
T Consensus 121 ----~~~~~~~~~~~Lk---pgG~lvi~~~---~---~-----------------------~~~~~~~~~e~~~~~~~~~ 164 (181)
T TIGR00138 121 ----LNVLLELTLNLLK---VGGYFLAYKG---K---K-----------------------YLDEIEEAKRKCQVLGVEP 164 (181)
T ss_pred ----HHHHHHHHHHhcC---CCCEEEEEcC---C---C-----------------------cHHHHHHHHHhhhhcCceE
Confidence 2356888899999 7999887531 0 0 23455555555 69998
Q ss_pred eEEEecCCc-eeEE
Q 023625 263 YKITPMLGV-RSLI 275 (279)
Q Consensus 263 ~~~~~~~~~-~~~i 275 (279)
++..+..++ ..++
T Consensus 165 ~~~~~~~~~~~~~~ 178 (181)
T TIGR00138 165 LEVPPLTGPDRHLV 178 (181)
T ss_pred eeccccCCCceEEE
Confidence 888766543 3444
No 65
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.37 E-value=2.7e-12 Score=102.53 Aligned_cols=145 Identities=15% Similarity=0.277 Sum_probs=109.8
Q ss_pred EEEEecCCccHHHHHHHHHCCC--CeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC-----CC--ccceeeehhh
Q 023625 116 SLVDVAGGTGIMARAIATAFPD--IKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA-----IP--QANAVLLKWI 181 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-----~~--~~D~v~~~~v 181 (279)
+|++||||.|....-+++.+|+ +++...|. |.+++..++ ...++.....|+..+ .+ ..|++.+..+
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFv 153 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFV 153 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEE
Confidence 8999999999999999999988 99999999 888888775 235666666666542 11 4899999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCe---eCCHHHHHHHHHHC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGK---ERSVDDWKKLFLAA 258 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~r~~~e~~~ll~~a 258 (279)
|..++++.....+++++++|| |||.|++-|....+-... .+. ....++-+..+...|. -.+.+++.+||.+|
T Consensus 154 LSAi~pek~~~a~~nl~~llK---PGG~llfrDYg~~Dlaql-RF~-~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~a 228 (264)
T KOG2361|consen 154 LSAIHPEKMQSVIKNLRTLLK---PGGSLLFRDYGRYDLAQL-RFK-KGQCISENFYVRGDGTRAYFFTEEELDELFTKA 228 (264)
T ss_pred EeccChHHHHHHHHHHHHHhC---CCcEEEEeecccchHHHH-hcc-CCceeecceEEccCCceeeeccHHHHHHHHHhc
Confidence 999999999999999999999 899999988765543211 000 1113333333333232 24999999999999
Q ss_pred CCceeEE
Q 023625 259 GFSHYKI 265 (279)
Q Consensus 259 Gf~~~~~ 265 (279)
||..++.
T Consensus 229 gf~~~~~ 235 (264)
T KOG2361|consen 229 GFEEVQL 235 (264)
T ss_pred ccchhcc
Confidence 9987765
No 66
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.36 E-value=9.7e-12 Score=108.68 Aligned_cols=108 Identities=19% Similarity=0.326 Sum_probs=85.9
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C----CCCeEEeeCCCCCCC-C
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T----NDNLDFLGGNMFEAI-P 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~----~~ri~~~~~d~~~~~-~ 171 (279)
-+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.+++ . ..++++..+|.++.. +
T Consensus 219 llL~~lp--~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 219 FFMQHLP--ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHhCC--cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 3455554 22346999999999999999999999999999999 788887763 1 137899999998754 3
Q ss_pred -ccceeeehhhhc---cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWILH---NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vlh---~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||+|++.-.+| .++++.+.++++.+++.|+ |||.++++-
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk---pGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK---INGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc---cCCEEEEEE
Confidence 599999965554 3566677899999999999 799999874
No 67
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.35 E-value=3e-12 Score=100.07 Aligned_cols=132 Identities=13% Similarity=0.259 Sum_probs=94.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCCCCC--ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFEAIP--QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~ 184 (279)
-.+..+++|+|||.|.++..|+.++ -+++++|. +..++.|++ ..++|+++..|+.+..| .||+|+++.++|.
T Consensus 41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 3556899999999999999999986 36999999 999999884 24789999999987544 5999999999999
Q ss_pred CCh-hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 185 WND-EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 185 ~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+++ ++...++.++.++|+ |||.+++.... +. .... -|.....+.+.++|.+. |+.+
T Consensus 119 L~~~~~L~~~l~~l~~~L~---pgG~LV~g~~r-d~-----------~c~~-------wgh~~ga~tv~~~~~~~-~~~~ 175 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALA---PGGHLVFGHAR-DA-----------NCRR-------WGHAAGAETVLEMLQEH-LTEV 175 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEE---EEEEEEEEEE--HH-----------HHHH-------TT-S--HHHHHHHHHHH-SEEE
T ss_pred CCCHHHHHHHHHHHHHHhC---CCCEEEEEEec-CC-----------cccc-------cCcccchHHHHHHHHHH-hhhe
Confidence 986 678899999999999 79999886542 11 0110 13344667788888886 5555
Q ss_pred EEEe
Q 023625 264 KITP 267 (279)
Q Consensus 264 ~~~~ 267 (279)
+...
T Consensus 176 ~~~~ 179 (201)
T PF05401_consen 176 ERVE 179 (201)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 4443
No 68
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.34 E-value=1.1e-11 Score=97.93 Aligned_cols=109 Identities=17% Similarity=0.248 Sum_probs=83.3
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC-ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~-~~D 174 (279)
.++++++ ..+..++||+|||.|..+..|+++ +..|+++|. +..++.++. ..-.|+....|+.+ .++ .||
T Consensus 21 ~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 21 EVLEAVP--LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHCT--TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 3555555 445789999999999999999998 678999999 767766542 23458999999987 454 599
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
+|++..++++++.+...++++++.+.++ |||.++++..+-
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~---pGG~~li~~~~~ 136 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATK---PGGYNLIVTFME 136 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEE---EEEEEEEEEEB-
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcC---CcEEEEEEEecc
Confidence 9999899999999999999999999999 799888866543
No 69
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.34 E-value=2.4e-11 Score=97.65 Aligned_cols=147 Identities=10% Similarity=0.050 Sum_probs=93.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCC--ccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIP--QANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~v~~~~vlh~~ 185 (279)
++..+|||||||+|.++..+++. ...+++++|+ +.+++.++. .+++++.+|+.+ +.+ .||+|++.+++|++
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~--~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~ 88 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA--RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQAT 88 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH--cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcC
Confidence 45679999999999999988876 3567899999 788887764 357888888764 233 49999999999998
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh-----hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM-----ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
++. ..+|+++.++++ .+++.-+............ .....+........+.+..+.+++.++++++||
T Consensus 89 ~d~--~~~l~e~~r~~~------~~ii~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ll~~~Gf 160 (194)
T TIGR02081 89 RNP--EEILDEMLRVGR------HAIVSFPNFGYWRVRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDLCGELNL 160 (194)
T ss_pred cCH--HHHHHHHHHhCC------eEEEEcCChhHHHHHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHHHHHCCC
Confidence 774 467888877665 2222211100000000000 000000000000112345689999999999999
Q ss_pred ceeEEEecC
Q 023625 261 SHYKITPML 269 (279)
Q Consensus 261 ~~~~~~~~~ 269 (279)
++++....+
T Consensus 161 ~v~~~~~~~ 169 (194)
T TIGR02081 161 RILDRAAFD 169 (194)
T ss_pred EEEEEEEec
Confidence 998876553
No 70
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.34 E-value=7.5e-11 Score=98.56 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=93.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------CCCeEEeeCCCCCCCCccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------NDNLDFLGGNMFEAIPQANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~ri~~~~~d~~~~~~~~D~v~~~~vlh~ 184 (279)
.+..+|||+|||+|.+++.+++..+ .+++++|+ +.+++.|++. .+++.+..+|. .||+|++...
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~--- 188 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL--- 188 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc---
Confidence 4678999999999999998777544 36999999 8888877742 23444444332 5899987532
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
.+....+++++.++|+ |||.+++.+.... ..+++.+.+++.||++.+
T Consensus 189 --~~~~~~l~~~~~~~Lk---pgG~lilsgi~~~----------------------------~~~~v~~~l~~~Gf~~~~ 235 (250)
T PRK00517 189 --ANPLLELAPDLARLLK---PGGRLILSGILEE----------------------------QADEVLEAYEEAGFTLDE 235 (250)
T ss_pred --HHHHHHHHHHHHHhcC---CCcEEEEEECcHh----------------------------hHHHHHHHHHHCCCEEEE
Confidence 2334678999999999 7999988643211 345788999999999999
Q ss_pred EEecCCceeEEEEeC
Q 023625 265 ITPMLGVRSLIEAYP 279 (279)
Q Consensus 265 ~~~~~~~~~~i~~~~ 279 (279)
+.....+.+++..+|
T Consensus 236 ~~~~~~W~~~~~~~~ 250 (250)
T PRK00517 236 VLERGEWVALVGKKK 250 (250)
T ss_pred EEEeCCEEEEEEEeC
Confidence 998888888875543
No 71
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.33 E-value=3.1e-11 Score=99.89 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=98.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-C--C-Cccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-A--I-PQANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~--~-~~~D~v~~~~vl 182 (279)
.+..+|||||||+|.++..+++. ..+++++|. +..++.+++ ...++++...|+.+ + . ..||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 35679999999999999988875 467999999 777776663 23467788777754 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcc---hhhhhhc---CCeeCCHHHHHHHHH
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFD---ILMVSLF---RGKERSVDDWKKLFL 256 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d---~~~~~~~---~~~~r~~~e~~~ll~ 256 (279)
++.++. ..+|+++.+.|+ |||.+++..... . . .......... ....... .....+.++|.++++
T Consensus 125 ~~~~~~--~~~l~~~~~~L~---~gG~l~v~~~~~--~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 125 EHVPDP--ASFVRACAKLVK---PGGLVFFSTLNR--N--L-KSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred hccCCH--HHHHHHHHHHcC---CCcEEEEEecCC--C--h-HHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence 988765 478999999999 799988765321 1 1 0000000000 0000000 123448899999999
Q ss_pred HCCCceeEEEe
Q 023625 257 AAGFSHYKITP 267 (279)
Q Consensus 257 ~aGf~~~~~~~ 267 (279)
++||++++...
T Consensus 195 ~~Gf~~v~~~~ 205 (233)
T PRK05134 195 QAGLEVQDITG 205 (233)
T ss_pred HCCCeEeeeee
Confidence 99999887753
No 72
>PTZ00146 fibrillarin; Provisional
Probab=99.33 E-value=9.9e-11 Score=98.08 Aligned_cols=133 Identities=8% Similarity=0.064 Sum_probs=91.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hh----HHhhcccCCCCeEEeeCCCCCC------CCccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PH----VVDNLQGTNDNLDFLGGNMFEA------IPQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~d~~~~------~~~~D~v~~ 178 (279)
+.+..+|||+|||+|.++..+++... .-+++.+|+ +. +++.++.. .+|.++.+|...+ .+.+|+|++
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r-~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR-PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc-CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 56778999999999999999999863 458999998 54 44555443 6889999998653 235899988
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
... .+++...++.++.+.|+ |||.++|.....+-....++ .++-.+|. ++|+++
T Consensus 209 Dva----~pdq~~il~~na~r~LK---pGG~~vI~ika~~id~g~~p------------------e~~f~~ev-~~L~~~ 262 (293)
T PTZ00146 209 DVA----QPDQARIVALNAQYFLK---NGGHFIISIKANCIDSTAKP------------------EVVFASEV-QKLKKE 262 (293)
T ss_pred eCC----CcchHHHHHHHHHHhcc---CCCEEEEEEeccccccCCCH------------------HHHHHHHH-HHHHHc
Confidence 653 23345567778999999 79999984222111111100 00011344 788999
Q ss_pred CCceeEEEecCC
Q 023625 259 GFSHYKITPMLG 270 (279)
Q Consensus 259 Gf~~~~~~~~~~ 270 (279)
||+.++...+..
T Consensus 263 GF~~~e~v~L~P 274 (293)
T PTZ00146 263 GLKPKEQLTLEP 274 (293)
T ss_pred CCceEEEEecCC
Confidence 999999988753
No 73
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.30 E-value=2.1e-11 Score=95.88 Aligned_cols=99 Identities=20% Similarity=0.431 Sum_probs=80.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCCC--ccceeeehhhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAIP--QANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~ 184 (279)
...+|||+|||+|.++..+++++|..+++++|+ +.+++.++. . .+.+++...|.+++.+ .||+|++.=.+|.
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA 110 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence 678999999999999999999999999999999 888888764 1 1239999999998654 5999999877775
Q ss_pred CCh---hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WND---EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~~---~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-.+ +-..++++.+.+.|+ |||.++++-
T Consensus 111 ~~~~~~~~~~~~i~~a~~~Lk---~~G~l~lv~ 140 (170)
T PF05175_consen 111 GGDDGLDLLRDFIEQARRYLK---PGGRLFLVI 140 (170)
T ss_dssp TSHCHHHHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ccccchhhHHHHHHHHHHhcc---CCCEEEEEe
Confidence 544 346789999999999 799997644
No 74
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.30 E-value=9e-11 Score=98.17 Aligned_cols=124 Identities=23% Similarity=0.373 Sum_probs=93.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC--ccceeeehhh---
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP--QANAVLLKWI--- 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~v~~~~v--- 181 (279)
...+|||+|||+|.++..+++.+|..+++++|+ +.+++.++. ..++++++.+|+.++.+ .||+|++.-.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~ 166 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIP 166 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCc
Confidence 346999999999999999999999999999999 888887763 12479999999987543 5999987322
Q ss_pred ---hccCChh------------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh
Q 023625 182 ---LHNWNDE------------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240 (279)
Q Consensus 182 ---lh~~~~~------------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 240 (279)
+|.+..+ ....+++++.+.|+ |||.+++...
T Consensus 167 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~---~gG~~~~~~~------------------------- 218 (251)
T TIGR03534 167 EADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK---PGGWLLLEIG------------------------- 218 (251)
T ss_pred hhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc---cCCEEEEEEC-------------------------
Confidence 2222221 12478999999999 7998876210
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
....+++.++++++||+.+++..-
T Consensus 219 ----~~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 219 ----YDQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ----ccHHHHHHHHHHhCCCCceEEEeC
Confidence 013467889999999998877553
No 75
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.30 E-value=6.1e-11 Score=87.98 Aligned_cols=95 Identities=16% Similarity=0.263 Sum_probs=75.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC--C-C-Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE--A-I-PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~-~~~D~v~~~~ 180 (279)
..+..+|+|+|||+|.++..+++++|..+++++|+ +.+++.++. ...+++++.+|... + . +.+|+|++..
T Consensus 17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~ 96 (124)
T TIGR02469 17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG 96 (124)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence 34567999999999999999999999999999999 888877653 12578999888763 1 2 3699999866
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..+ ...++++++++.|+ |||.+++.
T Consensus 97 ~~~-----~~~~~l~~~~~~Lk---~gG~li~~ 121 (124)
T TIGR02469 97 SGG-----LLQEILEAIWRRLR---PGGRIVLN 121 (124)
T ss_pred cch-----hHHHHHHHHHHHcC---CCCEEEEE
Confidence 443 34588999999999 79988764
No 76
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.30 E-value=3.6e-11 Score=104.35 Aligned_cols=100 Identities=17% Similarity=0.332 Sum_probs=82.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC-ccceeeehhhhccC-
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP-QANAVLLKWILHNW- 185 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~- 185 (279)
...+|||+|||+|.++..+++++|..+++++|+ +.+++.++. ..-..++...|.++..+ .||+|++.-.+|..
T Consensus 196 ~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIvsNPPFH~g~ 275 (342)
T PRK09489 196 TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMIISNPPFHDGI 275 (342)
T ss_pred CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEEECCCccCCc
Confidence 346899999999999999999999999999999 788887764 22245678888877544 59999999888863
Q ss_pred --ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 186 --NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 186 --~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..+...++++++.+.|+ |||.++|+..
T Consensus 276 ~~~~~~~~~~i~~a~~~Lk---pgG~L~iVan 304 (342)
T PRK09489 276 QTSLDAAQTLIRGAVRHLN---SGGELRIVAN 304 (342)
T ss_pred cccHHHHHHHHHHHHHhcC---cCCEEEEEEe
Confidence 34556799999999999 7999988654
No 77
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.28 E-value=1.1e-10 Score=98.99 Aligned_cols=135 Identities=19% Similarity=0.382 Sum_probs=98.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC--ccceeeehhh--
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP--QANAVLLKWI-- 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~--~~D~v~~~~v-- 181 (279)
.+..+|||+|||+|..+..+++..|..+++++|+ +.+++.+++ ...++.++.+|++++.+ .||+|++.-.
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy~ 186 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPYI 186 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCcC
Confidence 4567999999999999999999999999999999 888877764 23589999999987644 5999987421
Q ss_pred ----hccCCh------------------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 182 ----LHNWND------------------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 182 ----lh~~~~------------------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
++...+ +...++++++.+.|+ |||.+++ +. + .
T Consensus 187 ~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk---~gG~l~~-e~-----g-~---------------- 240 (275)
T PRK09328 187 PEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK---PGGWLLL-EI-----G-Y---------------- 240 (275)
T ss_pred CcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc---cCCEEEE-EE-----C-c----------------
Confidence 111111 223578899999999 7998876 21 0 0
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEE-ecCCceeEEEEe
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSLIEAY 278 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~~ 278 (279)
...+++.+++++.||+.+++. +..+..-++.++
T Consensus 241 ------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 ------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 023568899999999877664 445555555554
No 78
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.27 E-value=6.7e-11 Score=97.27 Aligned_cols=144 Identities=13% Similarity=0.107 Sum_probs=98.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCC-CeEEeeCCCCC-C--C-Cccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TND-NLDFLGGNMFE-A--I-PQANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~-ri~~~~~d~~~-~--~-~~~D~v~~~~vl 182 (279)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.++. ... ++++...|+.+ + . ..||+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 36799999999999999998864 45999999 777777664 122 58888888765 2 2 259999999999
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch--hhhhhc---CCeeCCHHHHHHHHHH
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI--LMVSLF---RGKERSVDDWKKLFLA 257 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~--~~~~~~---~~~~r~~~e~~~ll~~ 257 (279)
|+..+. ..+|+++.++|+ |||.+++.....+.. . .. ......+. ...... .....+..++.+++++
T Consensus 123 ~~~~~~--~~~l~~~~~~L~---~gG~l~i~~~~~~~~--~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 193 (224)
T TIGR01983 123 EHVPDP--QAFIRACAQLLK---PGGILFFSTINRTPK--S-YL-LAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLES 193 (224)
T ss_pred HhCCCH--HHHHHHHHHhcC---CCcEEEEEecCCCch--H-HH-HHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHH
Confidence 988775 478999999999 799988765421110 0 00 00000000 000000 1223478899999999
Q ss_pred CCCceeEEEe
Q 023625 258 AGFSHYKITP 267 (279)
Q Consensus 258 aGf~~~~~~~ 267 (279)
+||+++++..
T Consensus 194 ~G~~i~~~~~ 203 (224)
T TIGR01983 194 AGLRVKDVKG 203 (224)
T ss_pred cCCeeeeeee
Confidence 9999988764
No 79
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.25 E-value=2.1e-10 Score=93.21 Aligned_cols=103 Identities=11% Similarity=0.123 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCC-CC--
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFE-AI-- 170 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~~-- 170 (279)
.+..+||+.|||.|.-+..|+++ +.+++++|+ +..++.+.+ ...++++.++|+++ +.
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34679999999999999999997 667999999 777776421 14589999999998 32
Q ss_pred ---CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 171 ---PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 171 ---~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
..||+|+-+.+|+.++++...+..+.+.++|+ |||.++++....+.
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~---pgg~llll~~~~~~ 168 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS---NNTQILLLVMEHDK 168 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC---CCcEEEEEEEecCC
Confidence 25999999999999999999999999999999 79999988765543
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=99.21 E-value=1e-09 Score=87.55 Aligned_cols=124 Identities=17% Similarity=0.307 Sum_probs=91.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCC-eEEeeCCCCCCCC--ccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDN-LDFLGGNMFEAIP--QANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~r-i~~~~~d~~~~~~--~~D~v~~~~v 181 (279)
.+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..++ +.++.+|+.++.+ .+|+|++...
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 45679999999999999999988 578999999 888887753 1223 8899999887544 5999997654
Q ss_pred hccCC-------------------hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC
Q 023625 182 LHNWN-------------------DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR 242 (279)
Q Consensus 182 lh~~~-------------------~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 242 (279)
+.... ......+++++.++|+ |||.++++....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk---~gG~~~~~~~~~------------------------- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK---PGGRILLLQSSL------------------------- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC---CCeEEEEEEccc-------------------------
Confidence 32211 1224568999999999 799887753210
Q ss_pred CeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 243 GKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 243 ~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...+++.++++++||++..+...
T Consensus 152 ---~~~~~l~~~~~~~g~~~~~~~~~ 174 (188)
T PRK14968 152 ---TGEDEVLEYLEKLGFEAEVVAEE 174 (188)
T ss_pred ---CCHHHHHHHHHHCCCeeeeeeec
Confidence 13457889999999998876544
No 81
>PHA03411 putative methyltransferase; Provisional
Probab=99.21 E-value=2.9e-10 Score=94.29 Aligned_cols=125 Identities=11% Similarity=0.135 Sum_probs=92.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-CC-ccceeeehhhhccCChhH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-IP-QANAVLLKWILHNWNDEE 189 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-~~-~~D~v~~~~vlh~~~~~~ 189 (279)
...+|||+|||+|.++..++++.+..+++++|+ +.+++.+++...+++++.+|+.+. .. .||+|++.-.++..+..+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d 143 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTD 143 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchh
Confidence 356999999999999999999887789999999 999998887556899999999873 23 599999987777654432
Q ss_pred H------------------HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHH
Q 023625 190 S------------------VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDW 251 (279)
Q Consensus 190 ~------------------~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~ 251 (279)
. .+.++.....|+ |+|.+.++ +... | ++ ....+.+||
T Consensus 144 ~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~---p~G~~~~~---yss~----~------~y---------~~sl~~~~y 198 (279)
T PHA03411 144 TKDVFEYTGGEFEFKVMTLGQKFADVGYFIV---PTGSAGFA---YSGR----P------YY---------DGTMKSNKY 198 (279)
T ss_pred hhhhhhhccCccccccccHHHHHhhhHheec---CCceEEEE---Eecc----c------cc---------cccCCHHHH
Confidence 2 345666677788 67766554 1111 1 10 112278899
Q ss_pred HHHHHHCCCce
Q 023625 252 KKLFLAAGFSH 262 (279)
Q Consensus 252 ~~ll~~aGf~~ 262 (279)
+.+++++||..
T Consensus 199 ~~~l~~~g~~~ 209 (279)
T PHA03411 199 LKWSKQTGLVT 209 (279)
T ss_pred HHHHHhcCcEe
Confidence 99999999863
No 82
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8.8e-10 Score=92.00 Aligned_cols=110 Identities=15% Similarity=0.291 Sum_probs=87.1
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCCCC-cc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEAIP-QA 173 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~~~-~~ 173 (279)
+-+++.++ .....+|+|+|||.|.+++.+++.+|..+++.+|. ...++.++.. ..+.++...|.+++.. .|
T Consensus 148 ~lLl~~l~--~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kf 225 (300)
T COG2813 148 RLLLETLP--PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKF 225 (300)
T ss_pred HHHHHhCC--ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccccccc
Confidence 34566665 33445999999999999999999999999999999 7778887741 2333678888888765 59
Q ss_pred ceeeehhhhccC---ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 174 NAVLLKWILHNW---NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 174 D~v~~~~vlh~~---~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|+|++.=.+|.- .+.-+.++++.+.+.|+ +||.|.|+-.
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~---~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLK---PGGELWIVAN 267 (300)
T ss_pred cEEEeCCCccCCcchhHHHHHHHHHHHHHhhc---cCCEEEEEEc
Confidence 999998888752 23344589999999999 7999998765
No 83
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.21 E-value=6.1e-11 Score=95.83 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=77.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCC-CC-C--CC--ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNM-FE-A--IP--QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~-~~-~--~~--~~D~v~~~~ 180 (279)
+..+|||+|||+|..+..+++.+|+.+++++|+ +.+++.+++ ...+++++.+|+ .. + .+ .+|+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 567999999999999999999999999999999 888887763 126799999998 33 3 32 499999865
Q ss_pred hhccCC------hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWN------DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~------~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+... ......+|++++++|+ |||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lk---pgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLK---PGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcC---CCCEEEEEc
Confidence 432111 1123578999999999 799998854
No 84
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.20 E-value=8.1e-10 Score=85.84 Aligned_cols=95 Identities=21% Similarity=0.289 Sum_probs=79.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC---CCccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA---IPQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~~~~D~v~~~~v 181 (279)
..++.+++|||||+|..+++++...|..+++.+|. ++.++..+. ..++++++.||..+- .+.+|.|++.--
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGGg 111 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGGG 111 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECCC
Confidence 67788999999999999999999999999999998 777766553 258999999998762 346999999765
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
- ....+|+.+...|+ |||+|++.-
T Consensus 112 ~------~i~~ile~~~~~l~---~ggrlV~na 135 (187)
T COG2242 112 G------NIEEILEAAWERLK---PGGRLVANA 135 (187)
T ss_pred C------CHHHHHHHHHHHcC---cCCeEEEEe
Confidence 2 34578999999999 799998743
No 85
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.18 E-value=7.9e-10 Score=91.26 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=112.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC--CeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC------CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD--IKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA------IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~------~~~~D~v 176 (279)
...-+||||.||+|.+....++.+|. .++...|. +..++..++ +.+-++|..+|.|+. .|..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 35679999999999999999999997 78999999 777777653 455669999999983 2458999
Q ss_pred eehhhhccCChhHHH-HHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCC-----eeCCHHH
Q 023625 177 LLKWILHNWNDEESV-KLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG-----KERSVDD 250 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~-~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~r~~~e 250 (279)
+.+.+...++|++.+ ..|+-+++++. |||.++....-+..+-. +........-+| +.|+..|
T Consensus 214 iVsGL~ElF~Dn~lv~~sl~gl~~al~---pgG~lIyTgQPwHPQle---------~IAr~LtsHr~g~~WvMRrRsq~E 281 (311)
T PF12147_consen 214 IVSGLYELFPDNDLVRRSLAGLARALE---PGGYLIYTGQPWHPQLE---------MIARVLTSHRDGKAWVMRRRSQAE 281 (311)
T ss_pred EEecchhhCCcHHHHHHHHHHHHHHhC---CCcEEEEcCCCCCcchH---------HHHHHHhcccCCCceEEEecCHHH
Confidence 999999999998755 47999999999 79987764422221110 111111111112 4579999
Q ss_pred HHHHHHHCCCceeEE-EecCCceeEEEEe
Q 023625 251 WKKLFLAAGFSHYKI-TPMLGVRSLIEAY 278 (279)
Q Consensus 251 ~~~ll~~aGf~~~~~-~~~~~~~~~i~~~ 278 (279)
+.+|+++|||..+.. .+.-|..+|-.++
T Consensus 282 mD~Lv~~aGF~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 282 MDQLVEAAGFEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred HHHHHHHcCCchhhheeccCCceEEEeec
Confidence 999999999985543 4445666666655
No 86
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=91.89 Aligned_cols=98 Identities=12% Similarity=0.120 Sum_probs=75.2
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC---
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--- 171 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--- 171 (279)
+++.+. ..+..+|||||||+|..+..+++..+ ..+++++|. +.+++.+++ ...+++++.+|..+..+
T Consensus 64 ~~~~l~--~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 64 MCELIE--PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHhcC--CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 444443 45678999999999999999998864 568999999 888877663 23468999999987332
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.||+|++...+++++ +++.+.|+ |||++++.
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~---~gG~lvi~ 172 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLK---DGGVLVIP 172 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcC---cCcEEEEE
Confidence 599999988876554 35667899 79998774
No 87
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.16 E-value=5.1e-10 Score=91.10 Aligned_cols=132 Identities=14% Similarity=0.204 Sum_probs=100.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------------CCCCeEEeeCCCCC-CC-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------------TNDNLDFLGGNMFE-AI- 170 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------------~~~ri~~~~~d~~~-~~- 170 (279)
..+..+||..|||.|.-+..|+++ +.+++++|+ +..++.+.+ ...+|++.++|+|+ +.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 456779999999999999999997 578999999 888877520 13578999999998 32
Q ss_pred C--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCC-CchhhhhhhhcchhhhhhcCCeeCC
Q 023625 171 P--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQ-DKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 171 ~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
. .||+|+=+.+|+.++++...+..+.+.+.|+ |||+++++....+.... ++|+ ..+
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~---p~g~~lLi~l~~~~~~~~GPPf------------------~v~ 171 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK---PGGRGLLITLEYPQGEMEGPPF------------------SVT 171 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE---EEEEEEEEEEES-CSCSSSSS----------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhC---CCCcEEEEEEEcCCcCCCCcCC------------------CCC
Confidence 2 4999999999999999999999999999999 79996666555443322 2221 127
Q ss_pred HHHHHHHHHHCCCceeEEE
Q 023625 248 VDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~ 266 (279)
.+|++++|. .+|++..+.
T Consensus 172 ~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 172 EEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp HHHHHHHHT-TTEEEEEEE
T ss_pred HHHHHHHhc-CCcEEEEEe
Confidence 889999999 788877664
No 88
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.16 E-value=2.1e-09 Score=94.37 Aligned_cols=135 Identities=16% Similarity=0.286 Sum_probs=95.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC-CC---ccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA-IP---QANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~-~~---~~D~v~~~~vl 182 (279)
.+..+|||+|||+|.++..+++++|..+++++|+ +.+++.+++ ...+++++.+|++++ .+ .||+|++.=.-
T Consensus 250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCC
Confidence 3456999999999999999999999999999999 899988774 345899999999763 22 49999984321
Q ss_pred ccCC---------------------h--hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 183 HNWN---------------------D--EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 183 h~~~---------------------~--~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
..-+ + +-..++++.+.+.|+ |||.++ +|.-.+
T Consensus 330 I~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk---pgG~li-lEiG~~--------------------- 384 (423)
T PRK14966 330 IENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA---EGGFLL-LEHGFD--------------------- 384 (423)
T ss_pred CCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC---CCcEEE-EEECcc---------------------
Confidence 0000 0 113467777778899 688765 332110
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEE-ecCCceeEEEEe
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSLIEAY 278 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~~ 278 (279)
..+++.+++++.||+.+++. +..+..-++.++
T Consensus 385 -------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~ 417 (423)
T PRK14966 385 -------QGAAVRGVLAENGFSGVETLPDLAGLDRVTLGK 417 (423)
T ss_pred -------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEE
Confidence 24578889999999877664 456655555443
No 89
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.15 E-value=1.1e-09 Score=88.40 Aligned_cols=94 Identities=17% Similarity=0.264 Sum_probs=74.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc----C--CCCeEEeeCCCCC--C-C-Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG----T--NDNLDFLGGNMFE--A-I-PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~--~-~-~~~D~v~~ 178 (279)
..+..+|||+|||+|.++..+++.. +..+++++|. +.+++.+++ . .++++++.+|..+ + . +.+|+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 5677899999999999999998864 5679999999 888887653 1 4689999999865 2 2 35999998
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.. ...+...+++.+.+.|+ |||++++
T Consensus 118 ~~-----~~~~~~~~l~~~~~~Lk---pgG~lv~ 143 (198)
T PRK00377 118 GG-----GSEKLKEIISASWEIIK---KGGRIVI 143 (198)
T ss_pred CC-----CcccHHHHHHHHHHHcC---CCcEEEE
Confidence 43 22345678999999999 7998875
No 90
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.14 E-value=5.8e-10 Score=94.40 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=99.2
Q ss_pred HHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeE
Q 023625 88 FYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLD 160 (279)
Q Consensus 88 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~ 160 (279)
|....+..+++... +++.+ ..++.+|||||||||.++++.++... .+++++|+ |..++.|++ ..+++.
T Consensus 140 FGTG~H~TT~lcl~-~l~~~---~~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 140 FGTGHHPTTRLCLE-LLEKY---VKPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp S-SSHCHHHHHHHH-HHHHH---SSTTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred ccCCCCHHHHHHHH-HHHHh---ccCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 55444455555544 33333 34568999999999999998888643 37999999 888888774 345666
Q ss_pred EeeCCCCC-CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh
Q 023625 161 FLGGNMFE-AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS 239 (279)
Q Consensus 161 ~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~ 239 (279)
+. ...+ ....||+|+..-. .+-...+...+.+.|+ |||.+++.-....
T Consensus 215 v~--~~~~~~~~~~dlvvANI~-----~~vL~~l~~~~~~~l~---~~G~lIlSGIl~~--------------------- 263 (295)
T PF06325_consen 215 VS--LSEDLVEGKFDLVVANIL-----ADVLLELAPDIASLLK---PGGYLILSGILEE--------------------- 263 (295)
T ss_dssp ES--CTSCTCCS-EEEEEEES------HHHHHHHHHHCHHHEE---EEEEEEEEEEEGG---------------------
T ss_pred EE--EecccccccCCEEEECCC-----HHHHHHHHHHHHHhhC---CCCEEEEccccHH---------------------
Confidence 53 1111 2246999987432 2345678888899999 6888877554321
Q ss_pred hcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 240 LFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 240 ~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
..+++.+.+++ ||++.+......+.+++--|
T Consensus 264 -------~~~~v~~a~~~-g~~~~~~~~~~~W~~l~~~K 294 (295)
T PF06325_consen 264 -------QEDEVIEAYKQ-GFELVEEREEGEWVALVFKK 294 (295)
T ss_dssp -------GHHHHHHHHHT-TEEEEEEEEETTEEEEEEEE
T ss_pred -------HHHHHHHHHHC-CCEEEEEEEECCEEEEEEEe
Confidence 24567788877 99999999999998876444
No 91
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.13 E-value=1.8e-10 Score=97.50 Aligned_cols=90 Identities=17% Similarity=0.299 Sum_probs=73.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCC---CeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPD---IKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNW 185 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~ 185 (279)
...+|||+|||+|.++..+++..|. .+++++|+ +.+++.|++...++.+..+|..+ |++ .||+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 4578999999999999999998874 37899999 88998887655789999999887 654 4999987542
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ ..+++++++|+ |||+++++.
T Consensus 161 -~----~~~~e~~rvLk---pgG~li~~~ 181 (272)
T PRK11088 161 -P----CKAEELARVVK---PGGIVITVT 181 (272)
T ss_pred -C----CCHHHHHhhcc---CCCEEEEEe
Confidence 1 23678899999 799999875
No 92
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.13 E-value=1.6e-09 Score=92.92 Aligned_cols=95 Identities=20% Similarity=0.421 Sum_probs=75.1
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeehh-----
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLKW----- 180 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~~----- 180 (279)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ..++++++.+|+++..+ .||+|++.=
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888888764 23689999999987544 599999741
Q ss_pred --------hhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 181 --------ILHNWND----------EESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 181 --------vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.+++.+. +....+++++.+.|+ |||++++
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~---pgG~l~~ 261 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT---EDGVLVV 261 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC---CCCEEEE
Confidence 1121111 234688999999999 7998775
No 93
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.13 E-value=1.1e-09 Score=85.68 Aligned_cols=144 Identities=12% Similarity=0.129 Sum_probs=95.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC---CC--ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA---IP--QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~---~~--~~D~v~~~~vlh~ 184 (279)
.+++++|||+|||.|.++..|.+. .++++.++++ +..+..+.+ ..+.++.+|+.+. ++ .||.|+++++|..
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~--rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~ 87 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA--RGVSVIQGDLDEGLADFPDQSFDYVILSQTLQA 87 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH--cCCCEEECCHHHhHhhCCCCCccEEehHhHHHh
Confidence 357899999999999999888875 6899999999 665555543 3688999998763 44 4999999999988
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC---------CCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHH
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN---------QSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLF 255 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~---------~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll 255 (279)
...++ ++|+++.++-+ +.+|.=+.... .+.. |.. ..+.....-..+-...|..+++++.
T Consensus 88 ~~~P~--~vL~EmlRVgr------~~IVsFPNFg~W~~R~~l~~~Grm-Pvt---~~lPy~WYdTPNih~~Ti~DFe~lc 155 (193)
T PF07021_consen 88 VRRPD--EVLEEMLRVGR------RAIVSFPNFGHWRNRLQLLLRGRM-PVT---KALPYEWYDTPNIHLCTIKDFEDLC 155 (193)
T ss_pred HhHHH--HHHHHHHHhcC------eEEEEecChHHHHHHHHHHhcCCC-CCC---CCCCCcccCCCCcccccHHHHHHHH
Confidence 76654 67888876644 33332211100 0000 000 0000000011123345999999999
Q ss_pred HHCCCceeEEEecC
Q 023625 256 LAAGFSHYKITPML 269 (279)
Q Consensus 256 ~~aGf~~~~~~~~~ 269 (279)
++.|+++.+...+.
T Consensus 156 ~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 156 RELGIRIEERVFLD 169 (193)
T ss_pred HHCCCEEEEEEEEc
Confidence 99999999887664
No 94
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.13 E-value=3.8e-09 Score=89.95 Aligned_cols=131 Identities=14% Similarity=0.278 Sum_probs=93.0
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeeh------
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLK------ 179 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~------ 179 (279)
.+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|++ ...+++++.+|++++.+ .||+|++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999999999999999999 888887774 23569999999988654 59999884
Q ss_pred -------hhhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcC
Q 023625 180 -------WILHNWND----------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFR 242 (279)
Q Consensus 180 -------~vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 242 (279)
.++++-+. +...++++++.+.|+ |||.+++ |....
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~---~gG~l~~-e~g~~------------------------ 247 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK---PNGFLVC-EIGNW------------------------ 247 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc---CCCEEEE-EECcc------------------------
Confidence 12222111 145678999999999 6886654 43211
Q ss_pred CeeCCHHHHHHHHH-HCCCceeEEE-ecCCceeEEEE
Q 023625 243 GKERSVDDWKKLFL-AAGFSHYKIT-PMLGVRSLIEA 277 (279)
Q Consensus 243 ~~~r~~~e~~~ll~-~aGf~~~~~~-~~~~~~~~i~~ 277 (279)
..+++.+++. +.||..+++. ++.+..-++.+
T Consensus 248 ----q~~~~~~~~~~~~~~~~~~~~~D~~g~~R~~~~ 280 (284)
T TIGR00536 248 ----QQKSLKELLRIKFTWYDVENGRDLNGKERVVLG 280 (284)
T ss_pred ----HHHHHHHHHHhcCCCceeEEecCCCCCceEEEE
Confidence 2335667777 4688766554 45555444433
No 95
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.12 E-value=8.3e-10 Score=94.12 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=86.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC-Cccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI-PQANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~-~~~D~v~~~~vlh 183 (279)
.+..+|||+|||+|.++..+++. +..+++++|+ +.+++.+++ ..+++.+..++..... ..||+|++....
T Consensus 158 ~~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~- 235 (288)
T TIGR00406 158 LKDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA- 235 (288)
T ss_pred CCCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH-
Confidence 35689999999999999988865 4458999999 888887764 2356777776643322 369999985433
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCcee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHY 263 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~ 263 (279)
+....++.++.++|+ |||.+++...... ..+++.+.+++. |+.+
T Consensus 236 ----~~l~~ll~~~~~~Lk---pgG~li~sgi~~~----------------------------~~~~v~~~~~~~-f~~~ 279 (288)
T TIGR00406 236 ----EVIKELYPQFSRLVK---PGGWLILSGILET----------------------------QAQSVCDAYEQG-FTVV 279 (288)
T ss_pred ----HHHHHHHHHHHHHcC---CCcEEEEEeCcHh----------------------------HHHHHHHHHHcc-Ccee
Confidence 234678999999999 7999888653211 235667777766 8877
Q ss_pred EEEecCC
Q 023625 264 KITPMLG 270 (279)
Q Consensus 264 ~~~~~~~ 270 (279)
++.....
T Consensus 280 ~~~~~~~ 286 (288)
T TIGR00406 280 EIRQREE 286 (288)
T ss_pred eEeccCC
Confidence 7665443
No 96
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.12 E-value=1.5e-09 Score=88.71 Aligned_cols=125 Identities=11% Similarity=0.220 Sum_probs=97.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CCC--ccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AIP--QANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~--~~D~v~~~ 179 (279)
....+|||+|||+|..+..++++.+.++++++++ +.+.+.|++ ..+|++++..|+.. ..+ .||+|++.
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N 122 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICN 122 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence 4488999999999999999999999999999999 888888874 47899999999976 122 48999985
Q ss_pred hhhccCChh----------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCC
Q 023625 180 WILHNWNDE----------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRG 243 (279)
Q Consensus 180 ~vlh~~~~~----------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 243 (279)
=..+..++. ....+++.+.+.|+ |||++.++-.. +
T Consensus 123 PPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk---~~G~l~~V~r~-----------e--------------- 173 (248)
T COG4123 123 PPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK---PGGRLAFVHRP-----------E--------------- 173 (248)
T ss_pred CCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc---CCCEEEEEecH-----------H---------------
Confidence 444433322 34678889999999 79998875421 0
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
...|+.+++++.+|...++..+
T Consensus 174 ---rl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 174 ---RLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred ---HHHHHHHHHHhcCCCceEEEEe
Confidence 3458889999999887777554
No 97
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.11 E-value=4.3e-10 Score=90.36 Aligned_cols=98 Identities=19% Similarity=0.310 Sum_probs=75.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC-C---CC--ccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE-A---IP--QANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~-~---~~--~~D~v~~~~ 180 (279)
...+|||||||+|.++..+++++|+..++++|+ +.+++.++. .-.+++++.+|+.+ + .+ .+|.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 456999999999999999999999999999999 888877653 12589999999864 1 23 488888754
Q ss_pred hhccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+ |+... ...++++++++|+ |||.+++..
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lk---pgG~l~~~t 132 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLK---KGGVIHFKT 132 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhC---CCCEEEEEe
Confidence 332 22211 1468999999999 799988755
No 98
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.11 E-value=7.2e-10 Score=94.16 Aligned_cols=97 Identities=21% Similarity=0.438 Sum_probs=75.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeehh---
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLKW--- 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~~--- 180 (279)
+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+. ..++++++.+|++++.+ .||+|++.=
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 457899999999999999999999999999999 888888774 23689999999987554 599999741
Q ss_pred ----------hhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 181 ----------ILHNWND----------EESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 181 ----------vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.+++.+. +....+++++.+.|+ |||++++
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~---~gG~l~~ 249 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN---ENGVLVV 249 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC---CCCEEEE
Confidence 1111111 123678999999999 7997764
No 99
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.10 E-value=7.4e-10 Score=84.87 Aligned_cols=124 Identities=19% Similarity=0.184 Sum_probs=93.5
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC--C-ccceeeehhhhc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI--P-QANAVLLKWILH 183 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~--~-~~D~v~~~~vlh 183 (279)
..+|||+|||+|+++..|++.--..+.+++|. +..++.|+. ..+.|+|+..|+.+|. + +||+|+-...+.
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 44999999999999999999875566899999 888887763 3456999999999852 2 588887654432
Q ss_pred c------CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHH
Q 023625 184 N------WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLA 257 (279)
Q Consensus 184 ~------~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~ 257 (279)
. -.+......+..+.+.|+ |||.++|... .+|.+|+.+.++.
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~---~~gifvItSC-----------------------------N~T~dELv~~f~~ 195 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLS---PGGIFVITSC-----------------------------NFTKDELVEEFEN 195 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccC---CCcEEEEEec-----------------------------CccHHHHHHHHhc
Confidence 2 222233456788888888 7888877432 1288899999999
Q ss_pred CCCceeEEEecC
Q 023625 258 AGFSHYKITPML 269 (279)
Q Consensus 258 aGf~~~~~~~~~ 269 (279)
-||.....++.|
T Consensus 196 ~~f~~~~tvp~p 207 (227)
T KOG1271|consen 196 FNFEYLSTVPTP 207 (227)
T ss_pred CCeEEEEeeccc
Confidence 999988877765
No 100
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.10 E-value=2.1e-09 Score=87.23 Aligned_cols=96 Identities=16% Similarity=0.242 Sum_probs=73.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------CC--ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA---------IP--QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~--~~D~v~~ 178 (279)
+.+..+|||+|||+|.++..+++.. +..+++++|+.++. .. .+++++.+|+.++ .+ .+|+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~----~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD----PI-VGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc----CC-CCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4667899999999999999999986 45799999995432 22 4689999999873 22 4999998
Q ss_pred hhhhccCChh---------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 179 KWILHNWNDE---------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 179 ~~vlh~~~~~---------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+.|..... ....+|+++.++|+ |||.+++..
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk---pGG~~vi~~ 165 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA---PGGSFVVKV 165 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC---CCCEEEEEE
Confidence 7665543321 12468999999999 799988854
No 101
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2e-09 Score=90.42 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=101.0
Q ss_pred HHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeE----
Q 023625 88 FYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLD---- 160 (279)
Q Consensus 88 f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~---- 160 (279)
|....+..+++... +++.+ ..++.+|+|+|||||.++++.++... .+++++|+ |..++.++.. ...+.
T Consensus 141 FGTG~HpTT~lcL~-~Le~~---~~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~ 215 (300)
T COG2264 141 FGTGTHPTTSLCLE-ALEKL---LKKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQ 215 (300)
T ss_pred cCCCCChhHHHHHH-HHHHh---hcCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhh
Confidence 54444444444443 34444 35789999999999999999888643 37999999 8888887742 12232
Q ss_pred EeeCCCCC-CCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhh
Q 023625 161 FLGGNMFE-AIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMV 238 (279)
Q Consensus 161 ~~~~d~~~-~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~ 238 (279)
....+..+ +.. .||+|+.+= |- +-.+++...+.+.++ |||++++.... .+
T Consensus 216 ~~~~~~~~~~~~~~~DvIVANI-LA----~vl~~La~~~~~~lk---pgg~lIlSGIl-~~------------------- 267 (300)
T COG2264 216 AKGFLLLEVPENGPFDVIVANI-LA----EVLVELAPDIKRLLK---PGGRLILSGIL-ED------------------- 267 (300)
T ss_pred cccccchhhcccCcccEEEehh-hH----HHHHHHHHHHHHHcC---CCceEEEEeeh-Hh-------------------
Confidence 33333333 232 599998743 31 224688899999999 79988775532 11
Q ss_pred hhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEE
Q 023625 239 SLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIE 276 (279)
Q Consensus 239 ~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~ 276 (279)
..+.+.+.++++||.++++.....+.+++-
T Consensus 268 --------q~~~V~~a~~~~gf~v~~~~~~~eW~~i~~ 297 (300)
T COG2264 268 --------QAESVAEAYEQAGFEVVEVLEREEWVAIVG 297 (300)
T ss_pred --------HHHHHHHHHHhCCCeEeEEEecCCEEEEEE
Confidence 245678889999999999998888887764
No 102
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.10 E-value=1.3e-09 Score=88.76 Aligned_cols=100 Identities=15% Similarity=0.227 Sum_probs=76.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI--- 170 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~--- 170 (279)
..+++.++ ..+..+|||||||+|..+..+++.. ++.+++++|. +.+++.+++ ...+++++.+|.....
T Consensus 66 ~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 66 AIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 33555554 5678899999999999999998875 4578999999 888887764 1257999999987632
Q ss_pred CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 171 PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..||+|++....+..+ +.+.+.|+ |||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lk---pgG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLK---DGGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhC---CCcEEEEE
Confidence 2599999987665433 34566799 79998875
No 103
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.07 E-value=5e-10 Score=87.08 Aligned_cols=123 Identities=20% Similarity=0.251 Sum_probs=84.8
Q ss_pred EEeeC-hhHHhhcccC--------CCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCc
Q 023625 141 TVFDL-PHVVDNLQGT--------NDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGG 208 (279)
Q Consensus 141 ~~~D~-~~~~~~a~~~--------~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG 208 (279)
+++|. +++++.|++. ..+++++.+|..+ |.+ .||+|++..++|+++|. .+.|++++++|+ |||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLk---pGG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLK---PGS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcC---cCe
Confidence 47898 8999887531 2479999999987 655 49999999999998764 588999999999 799
Q ss_pred EEEEEeeecCCCCCCchhhhhhhhcchhhh-----hhc----------CCeeCCHHHHHHHHHHCCCceeEEEecCC
Q 023625 209 KVIIIDMAIENQSQDKESMETQLCFDILMV-----SLF----------RGKERSVDDWKKLFLAAGFSHYKITPMLG 270 (279)
Q Consensus 209 ~lli~e~~~~~~~~~~~~~~~~~~~d~~~~-----~~~----------~~~~r~~~e~~~ll~~aGf~~~~~~~~~~ 270 (279)
++++.|...++....... .......... ... -....+.+|+.++|+++||+.++......
T Consensus 76 ~l~i~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~ 150 (160)
T PLN02232 76 RVSILDFNKSNQSVTTFM--QGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISG 150 (160)
T ss_pred EEEEEECCCCChHHHHHH--HHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcc
Confidence 999999865443111000 0000000000 000 01234889999999999999888877653
No 104
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.06 E-value=1.7e-09 Score=88.29 Aligned_cols=99 Identities=12% Similarity=0.194 Sum_probs=75.6
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---C
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI---P 171 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~ 171 (279)
.+++.+. ..+..+|||||||+|.++..+++..+ +.+++++|+ +.+++.|++ ..++++++.+|..+.. .
T Consensus 68 ~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 68 MMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 3444444 56778999999999999999999865 467999998 888887764 1257999999997632 2
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.||+|++....+. +.+.+.+.|+ |||++++.
T Consensus 146 ~fD~Ii~~~~~~~--------~~~~~~~~L~---~gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPK--------IPEALIDQLK---EGGILVMP 176 (215)
T ss_pred CCCEEEEcCCccc--------ccHHHHHhcC---cCcEEEEE
Confidence 5999998765543 3445678899 79998874
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.06 E-value=3.7e-09 Score=96.70 Aligned_cols=132 Identities=14% Similarity=0.330 Sum_probs=94.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeehh----
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLKW---- 180 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~~---- 180 (279)
..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+. ..++++++.+|+++..+ .||+|++.-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 46899999999999999999999999999999 888888774 24689999999987543 599999831
Q ss_pred ----------hhccCC------h----hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhh
Q 023625 181 ----------ILHNWN------D----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSL 240 (279)
Q Consensus 181 ----------vlh~~~------~----~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~ 240 (279)
++.+.+ . +...++++++.+.|+ |||.+++ |.- . .
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~---~gG~l~l-Eig--~---~----------------- 272 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK---PNGKIIL-EIG--F---K----------------- 272 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc---CCCEEEE-EEC--C---c-----------------
Confidence 111111 0 123467888899999 7998765 321 1 0
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEE-ecCCceeEEEE
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKIT-PMLGVRSLIEA 277 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~-~~~~~~~~i~~ 277 (279)
..+++.+++++.||..+++. +..+..-++.+
T Consensus 273 ------q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~ 304 (506)
T PRK01544 273 ------QEEAVTQIFLDHGYNIESVYKDLQGHSRVILI 304 (506)
T ss_pred ------hHHHHHHHHHhcCCCceEEEecCCCCceEEEe
Confidence 34567888899999877664 45555444433
No 106
>PRK14967 putative methyltransferase; Provisional
Probab=99.06 E-value=6.1e-09 Score=85.57 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=74.6
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC--ccceeeehhhhc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP--QANAVLLKWILH 183 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh 183 (279)
..+..+|||+|||+|.++..+++. +..+++++|+ +.+++.++. ...+++++.+|+.+..+ .||+|++.-..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 345689999999999999998876 3348999999 788876654 22368899999877433 599999863222
Q ss_pred cCCh-------------------hHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 184 NWND-------------------EESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 184 ~~~~-------------------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.-++ .....+++++.+.|+ |||+++++..-.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk---~gG~l~~~~~~~ 162 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA---PGGSLLLVQSEL 162 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC---CCcEEEEEEecc
Confidence 1111 113568889999999 799998865433
No 107
>PRK04457 spermidine synthase; Provisional
Probab=99.04 E-value=9.7e-10 Score=92.25 Aligned_cols=98 Identities=16% Similarity=0.362 Sum_probs=77.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CCC-ccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AIP-QANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~-~~D~v~~~~ 180 (279)
++.++|||||||+|.++..+++.+|..+++++|+ |.+++.|++ ..+|++++.+|..+ ..+ .||+|++..
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 3567999999999999999999999999999999 999998874 13789999999854 233 599998742
Q ss_pred hhcc--CChh-HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 181 ILHN--WNDE-ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 181 vlh~--~~~~-~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+. .+.. ....+++++++.|+ |||.+++.
T Consensus 145 -~~~~~~~~~l~t~efl~~~~~~L~---pgGvlvin 176 (262)
T PRK04457 145 -FDGEGIIDALCTQPFFDDCRNALS---SDGIFVVN 176 (262)
T ss_pred -CCCCCCccccCcHHHHHHHHHhcC---CCcEEEEE
Confidence 221 1111 12689999999999 79988774
No 108
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.03 E-value=3.3e-09 Score=85.42 Aligned_cols=96 Identities=18% Similarity=0.306 Sum_probs=74.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC---C-Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA---I-PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~---~-~~~D~v~~~~ 180 (279)
..+..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ..++++++.+|..+. . +.+|.+++..
T Consensus 38 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d~v~~~~ 117 (196)
T PRK07402 38 LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPDRVCIEG 117 (196)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCCEEEEEC
Confidence 45678999999999999999998889899999999 888887764 125799999988641 2 2356665421
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
......+++++.+.|+ |||++++...
T Consensus 118 ------~~~~~~~l~~~~~~Lk---pgG~li~~~~ 143 (196)
T PRK07402 118 ------GRPIKEILQAVWQYLK---PGGRLVATAS 143 (196)
T ss_pred ------CcCHHHHHHHHHHhcC---CCeEEEEEee
Confidence 2235688999999999 7999888754
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.02 E-value=3e-09 Score=75.53 Aligned_cols=93 Identities=24% Similarity=0.396 Sum_probs=76.3
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc-----cCCCCeEEeeCCCCCCC----CccceeeehhhhccC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ-----GTNDNLDFLGGNMFEAI----PQANAVLLKWILHNW 185 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-----~~~~ri~~~~~d~~~~~----~~~D~v~~~~vlh~~ 185 (279)
+|+|+|||.|..+..+++ .+..+++++|. +..+..++ ....++++..+|+.+.. +++|++++..+++.+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999999 66666655 12467899999998732 259999999999865
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.+....+++++.+.++ |||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~---~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLK---PGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcC---CCCEEEEE
Confidence 5567899999999999 79988765
No 110
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.98 E-value=1.7e-08 Score=79.82 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=103.4
Q ss_pred HHHHHHhHhhhcCCCChhHHhhCCChhhhhhcCchHHHHHHHHhhh----cchhhHHHHHHhchhhhCCCCEEEEecCCc
Q 023625 49 TAFHCLGTWLQNDDPSLFETAHGKKVWDRVADEPKFKSLFYDLMIT----DSELIAGIVIKDCKEVFEGLKSLVDVAGGT 124 (279)
Q Consensus 49 ~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~----~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~ 124 (279)
.-++.|.|.|-+.. + ..-++.+.++|+....|+...+. +-......+++.+. ..++...|.|+|||.
T Consensus 13 srFR~lNE~LYT~~-s-------~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~-~~~~~~viaD~GCGd 83 (219)
T PF05148_consen 13 SRFRWLNEQLYTTS-S-------EEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLK-KRPKSLVIADFGCGD 83 (219)
T ss_dssp HHHHHHHHHHHHS--H-------HHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHC-TS-TTS-EEEES-TT
T ss_pred CchHHHHHhHhcCC-H-------HHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH-hcCCCEEEEECCCch
Confidence 34455666665442 1 12345566777766665554443 32233455565554 134457899999999
Q ss_pred cHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhC
Q 023625 125 GIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAI 201 (279)
Q Consensus 125 G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L 201 (279)
+.++..+.+ ..++.-+|+-.. +-.++..|+.. |.+ ..|+++++..|..- +....|+++.|+|
T Consensus 84 A~la~~~~~---~~~V~SfDLva~---------n~~Vtacdia~vPL~~~svDv~VfcLSLMGT---n~~~fi~EA~RvL 148 (219)
T PF05148_consen 84 AKLAKAVPN---KHKVHSFDLVAP---------NPRVTACDIANVPLEDESVDVAVFCLSLMGT---NWPDFIREANRVL 148 (219)
T ss_dssp -HHHHH--S------EEEEESS-S---------STTEEES-TTS-S--TT-EEEEEEES---SS----HHHHHHHHHHHE
T ss_pred HHHHHhccc---CceEEEeeccCC---------CCCEEEecCccCcCCCCceeEEEEEhhhhCC---CcHHHHHHHHhee
Confidence 999976542 357889997321 12356688866 765 49999998887642 3578999999999
Q ss_pred CCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEe
Q 023625 202 PSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAY 278 (279)
Q Consensus 202 ~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~ 278 (279)
+ |||.+.|.|.... .-..+++.+.+++.||+.......+....+++++
T Consensus 149 K---~~G~L~IAEV~SR--------------------------f~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~ 196 (219)
T PF05148_consen 149 K---PGGILKIAEVKSR--------------------------FENVKQFIKALKKLGFKLKSKDESNKHFVLFEFK 196 (219)
T ss_dssp E---EEEEEEEEEEGGG---------------------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEE
T ss_pred c---cCcEEEEEEeccc--------------------------CcCHHHHHHHHHHCCCeEEecccCCCeEEEEEEE
Confidence 9 7999999885321 0156788999999999998876666666666665
No 111
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.98 E-value=2.4e-08 Score=83.37 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=86.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCCCC-----Cccceeeehhhh---
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFEAI-----PQANAVLLKWIL--- 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~~~-----~~~D~v~~~~vl--- 182 (279)
..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++. ..++++..+|+++.. ..||+|++.=..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 45899999999999999999999999999999 8888887752 123688999987632 259999874211
Q ss_pred ---ccCChh------------------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhc
Q 023625 183 ---HNWNDE------------------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLF 241 (279)
Q Consensus 183 ---h~~~~~------------------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~ 241 (279)
+..+++ -...+++.+.+.|+ |||++++.-. . +
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~---~gG~l~l~~~-~-~---------------------- 219 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA---PGGHLLVETS-E-R---------------------- 219 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC---CCCEEEEEEC-c-c----------------------
Confidence 111111 12478888889999 7998875321 0 0
Q ss_pred CCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 242 RGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 242 ~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
..+++.+++++.||+..-+.
T Consensus 220 -----~~~~v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 220 -----QAPLAVEAFARAGLIARVAS 239 (251)
T ss_pred -----hHHHHHHHHHHCCCCceeeE
Confidence 23467788899998755433
No 112
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=98.98 E-value=1.3e-09 Score=80.06 Aligned_cols=96 Identities=15% Similarity=0.247 Sum_probs=75.7
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-C--C--Cccceeeehhhh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-A--I--PQANAVLLKWIL 182 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~--~--~~~D~v~~~~vl 182 (279)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++. ..++++++.+|+.+ . . ..||+|++.-..
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 888887763 34789999999976 2 3 359999997666
Q ss_pred ccCCh------hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWND------EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~------~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.... +....+++++.+.|+ |||.++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~---~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLK---PGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcC---CCeEEEEEe
Confidence 54321 234688999999999 799888764
No 113
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.96 E-value=4.8e-09 Score=84.06 Aligned_cols=107 Identities=19% Similarity=0.405 Sum_probs=79.0
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--------------------------
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-------------------------- 155 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------------------------- 155 (279)
.+..++..+-....+|||||.+|.++..+++.+....++++|+ +..+..|++.
T Consensus 48 rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~i 127 (288)
T KOG2899|consen 48 RLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPI 127 (288)
T ss_pred hhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccc
Confidence 4444444456778999999999999999999998888999999 7777777620
Q ss_pred ---------------------CCCeEEeeCCCCC-CCCccceeeeh----hhhccCChhHHHHHHHHHHHhCCCCCCCcE
Q 023625 156 ---------------------NDNLDFLGGNMFE-AIPQANAVLLK----WILHNWNDEESVKLLKKCKEAIPSKDEGGK 209 (279)
Q Consensus 156 ---------------------~~ri~~~~~d~~~-~~~~~D~v~~~----~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~ 209 (279)
..+..+...||.. ..+.||+|++- ||=-+|.|+-.+.+++++++.|. |||.
T Consensus 128 s~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~---pgGi 204 (288)
T KOG2899|consen 128 SQRNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH---PGGI 204 (288)
T ss_pred cccccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC---cCcE
Confidence 1122333334443 24569999763 44446899999999999999999 6886
Q ss_pred EEE
Q 023625 210 VII 212 (279)
Q Consensus 210 lli 212 (279)
+++
T Consensus 205 Lvv 207 (288)
T KOG2899|consen 205 LVV 207 (288)
T ss_pred EEE
Confidence 654
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.95 E-value=7.9e-09 Score=90.24 Aligned_cols=99 Identities=14% Similarity=0.248 Sum_probs=76.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC---CCC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE---AIP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--~~D~v~~~~v 181 (279)
....+||||||+|.++..+++++|+..++++|+ +.+++.+.. .-.++.++.+|... ..+ .+|.|++...
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 456899999999999999999999999999999 777776642 12579999999743 333 4899987543
Q ss_pred hccCChhH-----HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 182 LHNWNDEE-----SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 182 lh~~~~~~-----~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
. -|+... ...+|+.++++|+ |||.+.+...
T Consensus 202 d-PW~KkrHRRlv~~~fL~e~~RvLk---pGG~l~l~TD 236 (390)
T PRK14121 202 V-PWDKKPHRRVISEDFLNEALRVLK---PGGTLELRTD 236 (390)
T ss_pred C-CccccchhhccHHHHHHHHHHHcC---CCcEEEEEEE
Confidence 2 132221 1478999999999 7999888653
No 115
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.91 E-value=9.6e-09 Score=82.13 Aligned_cols=95 Identities=15% Similarity=0.278 Sum_probs=70.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------CC--ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA---------IP--QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~--~~D~v~~ 178 (279)
..++.+|||+|||+|.++..+++++ +..+++++|+.+.. .. .+++++.+|+.++ .+ .+|+|++
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~ 104 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PI-ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS 104 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cC-CCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence 4678899999999999999999887 56789999994432 22 5688888888652 22 4999998
Q ss_pred hhhhc---cCCh------hHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILH---NWND------EESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh---~~~~------~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
....| .|.. +...++|+++.++|+ |||++++.
T Consensus 105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk---pgG~lvi~ 145 (188)
T TIGR00438 105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLK---PKGNFVVK 145 (188)
T ss_pred CCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc---CCCEEEEE
Confidence 53322 1111 223678999999999 79998875
No 116
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.91 E-value=2.2e-08 Score=87.10 Aligned_cols=121 Identities=13% Similarity=0.019 Sum_probs=87.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCC--ccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIP--QANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~--~~D~v~~~~v 181 (279)
..++.+|||+|||+|.++.+.+.. ..+++++|+ +.++..++.. ...+.+..+|+.+ +.+ .+|+|++.-.
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 466789999999999999887654 678999999 8888766631 1348899999987 543 5999998422
Q ss_pred hc-------cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHH
Q 023625 182 LH-------NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKL 254 (279)
Q Consensus 182 lh-------~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~l 254 (279)
.. +...+...++|+++++.|+ |||+++++-. . ..+|.++
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk---~gG~lv~~~~---~----------------------------~~~~~~~ 303 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLK---SEGWIVYAVP---T----------------------------RIDLESL 303 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHcc---CCcEEEEEEc---C----------------------------CCCHHHH
Confidence 11 1122334689999999999 7999887542 1 1145577
Q ss_pred HHHCCCceeEEEec
Q 023625 255 FLAAGFSHYKITPM 268 (279)
Q Consensus 255 l~~aGf~~~~~~~~ 268 (279)
++++|| +......
T Consensus 304 ~~~~g~-i~~~~~~ 316 (329)
T TIGR01177 304 AEDAFR-VVKRFEV 316 (329)
T ss_pred HhhcCc-chheeee
Confidence 899999 7777654
No 117
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.88 E-value=2.9e-08 Score=80.90 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=69.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---Cccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI---PQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~~~D~v~~~~v 181 (279)
..+..+|||||||+|..+..+++... +++++|. +.+++.+++ ...++++..+|..+.. ..||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccC
Confidence 45678999999999999988887753 7999998 788777764 1246999999987643 25999999876
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.+ .+++.+.|+ |||++++.-
T Consensus 154 ~~~~--------~~~l~~~L~---~gG~lv~~~ 175 (212)
T PRK00312 154 APEI--------PRALLEQLK---EGGILVAPV 175 (212)
T ss_pred chhh--------hHHHHHhcC---CCcEEEEEE
Confidence 6543 445678899 799988754
No 118
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.86 E-value=8.7e-09 Score=81.97 Aligned_cols=137 Identities=14% Similarity=0.129 Sum_probs=92.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC--CCeEEe-eCCCCCC--CCccceeeehhhhccC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN--DNLDFL-GGNMFEA--IPQANAVLLKWILHNW 185 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~--~ri~~~-~~d~~~~--~~~~D~v~~~~vlh~~ 185 (279)
.+.+++||+|||||..+.+|...- -+.+++|+ ..|+++|.+.+ +....- ..+|... ...+|+|....||-.+
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~AaDVl~Yl 201 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIVAADVLPYL 201 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchhhhhHHHhh
Confidence 457899999999999998887763 35789999 88999887531 111111 1124432 3359999999999888
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~ 265 (279)
.. ...++--+...|+ |||.+.+.-.-.++.... . ..... --..++.-++++++..||.++++
T Consensus 202 G~--Le~~~~~aa~~L~---~gGlfaFSvE~l~~~~~f------~-l~ps~------RyAH~~~YVr~~l~~~Gl~~i~~ 263 (287)
T COG4976 202 GA--LEGLFAGAAGLLA---PGGLFAFSVETLPDDGGF------V-LGPSQ------RYAHSESYVRALLAASGLEVIAI 263 (287)
T ss_pred cc--hhhHHHHHHHhcC---CCceEEEEecccCCCCCe------e-cchhh------hhccchHHHHHHHHhcCceEEEe
Confidence 77 3477888999999 799877755444433211 0 00000 01125566789999999999999
Q ss_pred Eec
Q 023625 266 TPM 268 (279)
Q Consensus 266 ~~~ 268 (279)
.++
T Consensus 264 ~~t 266 (287)
T COG4976 264 EDT 266 (287)
T ss_pred ecc
Confidence 765
No 119
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.85 E-value=1.1e-07 Score=80.49 Aligned_cols=130 Identities=19% Similarity=0.351 Sum_probs=89.9
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CC-CCeEEeeCCCCCCCC-ccceeeehh--hhcc--
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TN-DNLDFLGGNMFEAIP-QANAVLLKW--ILHN-- 184 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~-~ri~~~~~d~~~~~~-~~D~v~~~~--vlh~-- 184 (279)
+|+|+|||||..++.++++.|++++++.|+ +.+++.|+. .. .++.++.+|.+++.. .||+|+++= +-..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 989988874 22 667777779998765 699998731 1111
Q ss_pred -CCh------------------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCee
Q 023625 185 -WND------------------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKE 245 (279)
Q Consensus 185 -~~~------------------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 245 (279)
..+ +-..+++.++.+.|+ |||.++ +|.-..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~---~~g~l~-le~g~~--------------------------- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK---PGGVLI-LEIGLT--------------------------- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC---CCcEEE-EEECCC---------------------------
Confidence 000 134567777888888 555444 443211
Q ss_pred CCHHHHHHHHHHCC-CceeEEEe-cCCceeEEEE
Q 023625 246 RSVDDWKKLFLAAG-FSHYKITP-MLGVRSLIEA 277 (279)
Q Consensus 246 r~~~e~~~ll~~aG-f~~~~~~~-~~~~~~~i~~ 277 (279)
..+++.+++.+.| |..+.+.+ ..+..-++.+
T Consensus 242 -q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~ 274 (280)
T COG2890 242 -QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLA 274 (280)
T ss_pred -cHHHHHHHHHhcCCceEEEEEecCCCceEEEEE
Confidence 3567889999999 66555544 3444444433
No 120
>PRK00811 spermidine synthase; Provisional
Probab=98.85 E-value=1.8e-08 Score=85.61 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=74.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----------CCCCeEEeeCCCCC--C--CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----------TNDNLDFLGGNMFE--A--IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------~~~ri~~~~~d~~~--~--~~~~D~v 176 (279)
+..++||+||||+|..+..+++..+..+++++|+ +.+++.+++ ..+|++++.+|... . ...||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 4567999999999999999998655668999999 899988874 14689999999865 2 2359999
Q ss_pred eehhhhccCChhH--HHHHHHHHHHhCCCCCCCcEEEE
Q 023625 177 LLKWILHNWNDEE--SVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 177 ~~~~vlh~~~~~~--~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++...-+.-+... ...+++.+++.|+ |||.+++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~---~gGvlv~ 189 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALK---EDGIFVA 189 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcC---CCcEEEE
Confidence 9854322212211 2577899999999 7997775
No 121
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=6.7e-08 Score=78.63 Aligned_cols=118 Identities=18% Similarity=0.337 Sum_probs=90.5
Q ss_pred HHHHhhhcchhh----HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHH-HCCCCeEEEeeC-hhHHhhccc------C
Q 023625 88 FYDLMITDSELI----AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIAT-AFPDIKCTVFDL-PHVVDNLQG------T 155 (279)
Q Consensus 88 f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~-~~p~~~~~~~D~-~~~~~~a~~------~ 155 (279)
|...|...++.. +..|+.... ..++.+|+|.|.|+|.++..|+. ..|.-+++.+|. +...+.|++ .
T Consensus 67 ~~~~~~R~tQiIyPKD~~~I~~~~g--i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l 144 (256)
T COG2519 67 YLLSMKRRTQIIYPKDAGYIVARLG--ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGL 144 (256)
T ss_pred HHHhCcCCCceecCCCHHHHHHHcC--CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcc
Confidence 333455444432 223444443 78899999999999999999997 567789999999 888888874 4
Q ss_pred CCCeEEeeCCCCCC-CC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 156 NDNLDFLGGNMFEA-IP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 156 ~~ri~~~~~d~~~~-~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.+++++..+|+.+. .+ .+|++++ +++++. ..|.++.++|+ |||.+++..+..
T Consensus 145 ~d~v~~~~~Dv~~~~~~~~vDav~L-----Dmp~PW--~~le~~~~~Lk---pgg~~~~y~P~v 198 (256)
T COG2519 145 GDRVTLKLGDVREGIDEEDVDAVFL-----DLPDPW--NVLEHVSDALK---PGGVVVVYSPTV 198 (256)
T ss_pred ccceEEEeccccccccccccCEEEE-----cCCChH--HHHHHHHHHhC---CCcEEEEEcCCH
Confidence 57799999999884 33 6999998 667764 78999999999 799998876544
No 122
>PRK01581 speE spermidine synthase; Validated
Probab=98.81 E-value=2.2e-08 Score=86.30 Aligned_cols=99 Identities=11% Similarity=0.173 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------------CCCCeEEeeCCCCC--C-C-Cccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------------TNDNLDFLGGNMFE--A-I-PQAN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~--~-~-~~~D 174 (279)
....+||+||||.|..+.++++..+..+++++|+ +.+++.|+. ..+|++++.+|..+ . . ..||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4567999999999999999998666678999999 889998884 14799999999875 2 2 2599
Q ss_pred eeeehhhhc---cCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 175 AVLLKWILH---NWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 175 ~v~~~~vlh---~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
+|++-..-. ....--...+++.+++.|+ |||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk---PgGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLT---EDGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcC---CCcEEEEe
Confidence 999853100 0111123568999999999 79987764
No 123
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.80 E-value=1.5e-07 Score=79.53 Aligned_cols=96 Identities=15% Similarity=0.249 Sum_probs=77.0
Q ss_pred CCEEEEecCCccH----HHHHHHHHCC----CCeEEEeeC-hhHHhhccc------------------------------
Q 023625 114 LKSLVDVAGGTGI----MARAIATAFP----DIKCTVFDL-PHVVDNLQG------------------------------ 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~------------------------------ 154 (279)
.-+|...||+||. +++.+.+..+ +.++++.|+ +.+++.|+.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999997 3444444432 467999999 888888762
Q ss_pred ------CCCCeEEeeCCCCC-CCC---ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 155 ------TNDNLDFLGGNMFE-AIP---QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 155 ------~~~ri~~~~~d~~~-~~~---~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
...+|+|..+|+.+ +.+ .||+|+++++|.+++++...+++++++++|+ |||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~---pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK---PDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC---CCcEEEE
Confidence 02567899999988 433 5999999999999999999999999999999 7997765
No 124
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.78 E-value=1.7e-07 Score=77.39 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=76.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---------CCcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---------IPQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---------~~~~ 173 (279)
..+.++|||||||+|.-+..+++..| +.+++.+|. ++.++.|++ ..++++++.+|..+- .+.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 45678999999999999999998865 679999999 888887774 357899999998752 1359
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+|++- -..+.-..++..+.+.|+ |||.|++-+..+
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~---~GG~ii~dn~l~ 181 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVK---VGGIIAFDNTLW 181 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcC---CCeEEEEEcCCc
Confidence 999883 233455688999999999 788666544433
No 125
>PHA03412 putative methyltransferase; Provisional
Probab=98.76 E-value=1.7e-07 Score=76.22 Aligned_cols=89 Identities=10% Similarity=0.110 Sum_probs=69.0
Q ss_pred CCEEEEecCCccHHHHHHHHHC---CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC-ccceeeehhhhccCCh
Q 023625 114 LKSLVDVAGGTGIMARAIATAF---PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWND 187 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~~ 187 (279)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|++...++.++.+|+.. +.. .||+|++.=..+....
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 5799999999999999999875 3568999999 89999998765789999999986 333 5999998544442221
Q ss_pred ----------hHHHHHHHHHHHhCC
Q 023625 188 ----------EESVKLLKKCKEAIP 202 (279)
Q Consensus 188 ----------~~~~~~L~~~~~~L~ 202 (279)
.-...++.++.+.++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~ 154 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIAR 154 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcC
Confidence 113458888888666
No 126
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.76 E-value=2.9e-08 Score=79.72 Aligned_cols=95 Identities=16% Similarity=0.277 Sum_probs=68.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEE-eeC-CCCC----CC---C-ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDF-LGG-NMFE----AI---P-QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~-~~~-d~~~----~~---~-~~D~v~~~~v 181 (279)
+.+.++|||||+|..++.+++.+. ++++.|. +.+++.+++. .+++. ... .+.+ ++ + +.|+|++..+
T Consensus 33 ~h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~-~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa 109 (261)
T KOG3010|consen 33 GHRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKH-PPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA 109 (261)
T ss_pred CcceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcC-CCcccccCCccccccccccccCCCcceeeehhhhh
Confidence 445899999999988888888765 4899999 9999998864 22221 111 2221 11 2 4999999999
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+|-+.- .++.+.++++||+ +||.+++...
T Consensus 110 ~HWFdl---e~fy~~~~rvLRk--~Gg~iavW~Y 138 (261)
T KOG3010|consen 110 VHWFDL---ERFYKEAYRVLRK--DGGLIAVWNY 138 (261)
T ss_pred HHhhch---HHHHHHHHHHcCC--CCCEEEEEEc
Confidence 996544 4789999999996 6777766553
No 127
>PLN02672 methionine S-methyltransferase
Probab=98.76 E-value=7.3e-08 Score=94.00 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=55.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------------------CCCeEEeeCCCCCCCC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------------------NDNLDFLGGNMFEAIP 171 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------------~~ri~~~~~d~~~~~~ 171 (279)
..+|+|+|||+|..++.+++++|..+++++|+ +.+++.|+.. .+|++|+.+|++++..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 36899999999999999999999999999999 8888777421 1489999999988542
Q ss_pred ----ccceeeeh
Q 023625 172 ----QANAVLLK 179 (279)
Q Consensus 172 ----~~D~v~~~ 179 (279)
.+|+|+++
T Consensus 199 ~~~~~fDlIVSN 210 (1082)
T PLN02672 199 DNNIELDRIVGC 210 (1082)
T ss_pred ccCCceEEEEEC
Confidence 48998873
No 128
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.74 E-value=1.2e-07 Score=81.68 Aligned_cols=93 Identities=14% Similarity=0.253 Sum_probs=70.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCC---Cccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAI---PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~---~~~D~v~~~~ 180 (279)
..+..+|||||||+|.++..+++..+. .+++++|. +.+++.|++ ..+++.++.+|..+.. ..||+|++..
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~ 157 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTV 157 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECC
Confidence 456789999999999999999998764 47999999 888877763 1357999999986632 3599999876
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+++. ...+.+.|+ |||++++..
T Consensus 158 g~~~i--------p~~~~~~Lk---pgG~Lvv~~ 180 (322)
T PRK13943 158 GVDEV--------PETWFTQLK---EGGRVIVPI 180 (322)
T ss_pred chHHh--------HHHHHHhcC---CCCEEEEEe
Confidence 55433 234567899 799988754
No 129
>PLN02366 spermidine synthase
Probab=98.74 E-value=9.2e-08 Score=81.86 Aligned_cols=98 Identities=17% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CC--Ccccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AI--PQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~--~~~D~v 176 (279)
++.++||+||||.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|... .. ..||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4678999999999999999987633468999999 778888775 14699999999753 23 259999
Q ss_pred eehhhhccCChh--HHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 177 LLKWILHNWNDE--ESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 177 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++-..-+.-+.. -...+++.+++.|+ |||.+++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~---pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALR---PGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcC---CCcEEEE
Confidence 984332211111 13478999999999 7998765
No 130
>PRK03612 spermidine synthase; Provisional
Probab=98.73 E-value=1.4e-07 Score=86.83 Aligned_cols=98 Identities=15% Similarity=0.334 Sum_probs=73.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhcccC------------CCCeEEeeCCCCCC---C-Ccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQGT------------NDNLDFLGGNMFEA---I-PQA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~------------~~ri~~~~~d~~~~---~-~~~ 173 (279)
++.++|||||||+|..+.++++ +|. .+++++|+ +++++.+++. .+|++++.+|..+- . ..|
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 4568999999999999999997 455 79999999 9999988751 36899999998761 2 369
Q ss_pred ceeeehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 174 NAVLLKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 174 D~v~~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|+|++...-...+.. -..++++++++.|+ |||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~---pgG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA---PDGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcC---CCeEEEEe
Confidence 999986432211110 12357899999999 79987764
No 131
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.73 E-value=6.6e-07 Score=72.62 Aligned_cols=158 Identities=16% Similarity=0.186 Sum_probs=106.9
Q ss_pred hhhhhcCchHHHHHHHHhhhc----chhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHh
Q 023625 75 WDRVADEPKFKSLFYDLMITD----SELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVD 150 (279)
Q Consensus 75 ~~~~~~~~~~~~~f~~~m~~~----~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 150 (279)
++.+.++|.....|+...+.. -.-....+++.+. .-+....|.|+|||.+.++. .-..++..+|+-.
T Consensus 139 ~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik-~r~~~~vIaD~GCGEakiA~-----~~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 139 FDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIK-RRPKNIVIADFGCGEAKIAS-----SERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHH-hCcCceEEEecccchhhhhh-----ccccceeeeeeec---
Confidence 455667777666666555432 1122345665554 13456789999999999876 1224688888632
Q ss_pred hcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhh
Q 023625 151 NLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESM 227 (279)
Q Consensus 151 ~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~ 227 (279)
.+-.++..|+.. |.+ +.|+++++..|.. .+...++++++++|+ |||.++|.|.-..
T Consensus 210 ------~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk---~gG~l~IAEv~SR--------- 268 (325)
T KOG3045|consen 210 ------VNERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILK---PGGLLYIAEVKSR--------- 268 (325)
T ss_pred ------CCCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhc---cCceEEEEehhhh---------
Confidence 234456778877 655 5899988877753 235678999999999 7999999884211
Q ss_pred hhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCceeEEEEeC
Q 023625 228 ETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGVRSLIEAYP 279 (279)
Q Consensus 228 ~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~~~i~~~~ 279 (279)
+. +...+.+.+...||.+......+....++++++
T Consensus 269 ----f~-------------dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK 303 (325)
T KOG3045|consen 269 ----FS-------------DVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKK 303 (325)
T ss_pred ----cc-------------cHHHHHHHHHHcCCeeeehhhhcceEEEEEEec
Confidence 11 445688889999999887777777777777653
No 132
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.72 E-value=9.2e-08 Score=75.09 Aligned_cols=89 Identities=18% Similarity=0.382 Sum_probs=64.4
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCC--ccc
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIP--QAN 174 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~--~~D 174 (279)
.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|+ +.+++.+++. .++++++.+|+.+ +.+ .+|
T Consensus 4 ~i~~~~~--~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 4 KIVRAAN--LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHhcC--CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 3555554 556789999999999999999998 468999999 7788777642 3589999999987 544 388
Q ss_pred eeeehhhhccCChhHHHHHHH
Q 023625 175 AVLLKWILHNWNDEESVKLLK 195 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~ 195 (279)
.|++.-.. +.+.+...++++
T Consensus 80 ~vi~n~Py-~~~~~~i~~~l~ 99 (169)
T smart00650 80 KVVGNLPY-NISTPILFKLLE 99 (169)
T ss_pred EEEECCCc-ccHHHHHHHHHh
Confidence 88775444 344444334443
No 133
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.69 E-value=3e-07 Score=75.24 Aligned_cols=140 Identities=19% Similarity=0.263 Sum_probs=90.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC-ccceeeehhhhccCChhHH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDEES 190 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~~~ 190 (279)
...++||||.|.|..+..++..+.+ +.+.+. +.|....++. .++++..|-....+ .||+|.+.++|-.-.++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~k--g~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P-- 167 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKK--GFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP-- 167 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhC--CCeEEehhhhhccCCceEEEeehhhhhccCCH--
Confidence 4578999999999999999988766 677777 6666555542 34444443333223 59999999999655554
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCC------C--CCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 191 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQ------S--QDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~lli~e~~~~~~------~--~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
..+|++++++|+ |+|++++.= ++|-. . ...|. + ..++ ....-+-....+.+.|+.+||++
T Consensus 168 ~~LL~~i~~~l~---p~G~lilAv-VlP~~pyVE~~~g~~~~P~-e---~l~~----~g~~~E~~v~~l~~v~~p~GF~v 235 (265)
T PF05219_consen 168 LTLLRDIRRALK---PNGRLILAV-VLPFRPYVEFGGGKSNRPS-E---LLPV----KGATFEEQVSSLVNVFEPAGFEV 235 (265)
T ss_pred HHHHHHHHHHhC---CCCEEEEEE-EecccccEEcCCCCCCCch-h---hcCC----CCCcHHHHHHHHHHHHHhcCCEE
Confidence 589999999999 788776543 33321 1 00010 0 1111 00111113344558899999999
Q ss_pred eEEEecCC
Q 023625 263 YKITPMLG 270 (279)
Q Consensus 263 ~~~~~~~~ 270 (279)
.+....|.
T Consensus 236 ~~~tr~PY 243 (265)
T PF05219_consen 236 ERWTRLPY 243 (265)
T ss_pred EEEeccCc
Confidence 99988764
No 134
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.69 E-value=1e-07 Score=80.51 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=74.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------CCCeEEeeCCCCC---C-CCccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------NDNLDFLGGNMFE---A-IPQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~~ri~~~~~d~~~---~-~~~~D~v~~ 178 (279)
..++||+||||+|..+..+++..+..+++++|+ +.+++.+++. .++++++.+|..+ . ...||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 456999999999999999998766678999999 8888877641 3688888888765 1 235999998
Q ss_pred hhhhccCChhH--HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILHNWNDEE--SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh~~~~~~--~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
...-+.-+... ...+++++++.|+ |||.+++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~---pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALN---EDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhC---CCcEEEEc
Confidence 65432222222 3578899999999 79988875
No 135
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.67 E-value=5.2e-08 Score=77.87 Aligned_cols=98 Identities=14% Similarity=0.300 Sum_probs=70.5
Q ss_pred CCCEEEEecCCccH----HHHHHHHHC----C-CCeEEEeeC-hhHHhhccc----------------------------
Q 023625 113 GLKSLVDVAGGTGI----MARAIATAF----P-DIKCTVFDL-PHVVDNLQG---------------------------- 154 (279)
Q Consensus 113 ~~~~vlDvG~G~G~----~~~~l~~~~----p-~~~~~~~D~-~~~~~~a~~---------------------------- 154 (279)
+.-+|..+||++|. +++.+.+.. + ..++.+.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45699999999997 333344411 2 468999999 888988862
Q ss_pred -----CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 155 -----TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 155 -----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
...+|+|..+|+.+ +.+ .+|+|++++||-.++++...+++++++++|+ |||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~---pgG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK---PGGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE---EEEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC---CCCEEEEe
Confidence 13689999999998 322 5999999999999999999999999999999 79988773
No 136
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.67 E-value=7.9e-08 Score=77.66 Aligned_cols=101 Identities=14% Similarity=0.265 Sum_probs=72.3
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCCCC--
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEAIP-- 171 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~~~-- 171 (279)
..+++.++ +.+..+|||||||+|..+..+++.. +.-+++.+|. +...+.|++ ...++.++.+|.....+
T Consensus 62 a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 62 ARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 34566665 6788999999999999999999875 3446899998 888888774 23589999999876443
Q ss_pred -ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||.|++.......+. .+.+.|+ +||++++.-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~---~gGrLV~pi 172 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLK---PGGRLVAPI 172 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEE---EEEEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcC---CCcEEEEEE
Confidence 4999999887754443 3455678 799988743
No 137
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.66 E-value=2.6e-07 Score=76.25 Aligned_cols=103 Identities=17% Similarity=0.317 Sum_probs=76.3
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHH-CCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-C---
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-I--- 170 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-~--- 170 (279)
|+..++ ..++.+|||.|.|+|.++..|++. .|.-++.-+|. ++..+.|++ ..+++++...|+.+. +
T Consensus 32 I~~~l~--i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~ 109 (247)
T PF08704_consen 32 ILMRLD--IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE 109 (247)
T ss_dssp HHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred HHHHcC--CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence 444444 788999999999999999999974 58889999999 888888774 457899999999642 2
Q ss_pred --CccceeeehhhhccCChhHHHHHHHHHHHhC-CCCCCCcEEEEEeeec
Q 023625 171 --PQANAVLLKWILHNWNDEESVKLLKKCKEAI-PSKDEGGKVIIIDMAI 217 (279)
Q Consensus 171 --~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L-~~~~pgG~lli~e~~~ 217 (279)
..+|.|++ |++++. ..+..+.++| + |||++.+.-+++
T Consensus 110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~---~gG~i~~fsP~i 149 (247)
T PF08704_consen 110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKK---PGGRICCFSPCI 149 (247)
T ss_dssp -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-E---EEEEEEEEESSH
T ss_pred ccCcccEEEE-----eCCCHH--HHHHHHHHHHhc---CCceEEEECCCH
Confidence 24899988 667664 5689999999 7 799998876544
No 138
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.65 E-value=5.7e-07 Score=75.06 Aligned_cols=97 Identities=15% Similarity=0.306 Sum_probs=80.8
Q ss_pred CCCEEEEecCCccH----HHHHHHHHCC-----CCeEEEeeC-hhHHhhccc----------------------------
Q 023625 113 GLKSLVDVAGGTGI----MARAIATAFP-----DIKCTVFDL-PHVVDNLQG---------------------------- 154 (279)
Q Consensus 113 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-~~~~~~a~~---------------------------- 154 (279)
+.-+|.-+||+||. +++.+.+..| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36689999999996 6666777776 478999999 888888762
Q ss_pred ------CCCCeEEeeCCCCCC--CC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 155 ------TNDNLDFLGGNMFEA--IP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 155 ------~~~ri~~~~~d~~~~--~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
....|.|..+|+.++ .+ .+|+|++++||=.++.+.-.+++++.+..|+ |||.|++
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~---~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK---PGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC---CCCEEEE
Confidence 134689999999984 33 4999999999999999999999999999999 7998877
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.5e-07 Score=72.81 Aligned_cols=99 Identities=10% Similarity=0.202 Sum_probs=76.1
Q ss_pred HHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCCC---c
Q 023625 102 IVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAIP---Q 172 (279)
Q Consensus 102 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~~---~ 172 (279)
.+++.+. ..+..+|||||||+|..+.-|++.-. +++.+++ ++..+.|++ . -.+|.+..+|-..-++ .
T Consensus 63 ~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aP 138 (209)
T COG2518 63 RMLQLLE--LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAP 138 (209)
T ss_pred HHHHHhC--CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCC
Confidence 3555554 67889999999999999999998754 7889998 777787874 1 2469999999988443 5
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
||.|+.....-..|+. +.+.|+ +||++++...
T Consensus 139 yD~I~Vtaaa~~vP~~--------Ll~QL~---~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVPEA--------LLDQLK---PGGRLVIPVG 170 (209)
T ss_pred cCEEEEeeccCCCCHH--------HHHhcc---cCCEEEEEEc
Confidence 9999998777655552 345578 7999998665
No 140
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=3.7e-07 Score=82.22 Aligned_cols=104 Identities=13% Similarity=0.214 Sum_probs=77.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCC---C-C-ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEA---I-P-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~---~-~-~~D~v~~~~ 180 (279)
..++.+|||+|||+|..+..+++..++.+++++|. +..++.+++ ...+++++.+|..+. . + .||.|++.-
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 45678999999999999999999988789999999 888877764 233578999998762 1 2 499998522
Q ss_pred ------hhc-------cCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 181 ------ILH-------NWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 181 ------vlh-------~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++. ...+++ ..++|+++.+.|+ |||++++....+
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk---pGG~lvystcs~ 375 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK---PGGTLLYATCSI 375 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 111 112222 2478999999999 799998877433
No 141
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.61 E-value=3.8e-07 Score=82.15 Aligned_cols=106 Identities=13% Similarity=0.217 Sum_probs=77.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC----Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI----PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~----~~~D~v~~ 178 (279)
..++.+|||+|||+|..+..+++..+..+++++|. +..++.+++ ...++.+..+|... +. ..||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 34678999999999999999999988789999999 888877653 11234447777654 21 24999986
Q ss_pred h------hhhccCCh-------hH-------HHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 179 K------WILHNWND-------EE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 179 ~------~vlh~~~~-------~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
- .+++..++ ++ ..++|+++.+.|+ |||++++....+..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk---pgG~lvystcs~~~ 373 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK---TGGTLVYATCSVLP 373 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEeCCCCh
Confidence 2 35554443 11 3689999999999 79999988765543
No 142
>PRK04148 hypothetical protein; Provisional
Probab=98.61 E-value=6e-07 Score=66.66 Aligned_cols=88 Identities=15% Similarity=0.200 Sum_probs=67.8
Q ss_pred CCCEEEEecCCccH-HHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC----ccceeeehhhhccCC
Q 023625 113 GLKSLVDVAGGTGI-MARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP----QANAVLLKWILHNWN 186 (279)
Q Consensus 113 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~v~~~~vlh~~~ 186 (279)
...+|+|||||+|. ++..|.+. +..++++|+ +..++.+++. .++++.+|+++|-+ ++|+|++.+ +
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~~~~y~~a~liysir-----p 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPNLEIYKNAKLIYSIR-----P 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh--CCeEEECcCCCCCHHHHhcCCEEEEeC-----C
Confidence 35789999999996 77777765 578999999 8888888764 57999999999643 599999865 5
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.+...-+.++++... .-++|.-
T Consensus 87 p~el~~~~~~la~~~~-----~~~~i~~ 109 (134)
T PRK04148 87 PRDLQPFILELAKKIN-----VPLIIKP 109 (134)
T ss_pred CHHHHHHHHHHHHHcC-----CCEEEEc
Confidence 6666777777777765 4455543
No 143
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=6.3e-07 Score=81.17 Aligned_cols=103 Identities=15% Similarity=0.238 Sum_probs=75.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC---CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA---IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~---~~-~~D~v~~~ 179 (279)
..+..+|||+|||+|..+..+++.. +..+++++|+ +..++.+++ . ..+++++.+|+.+. .+ .||+|++.
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEc
Confidence 3566899999999999999999986 6779999999 888877653 1 14589999998762 33 59999873
Q ss_pred hh------hc-------cCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 180 WI------LH-------NWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 180 ~v------lh-------~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
-. +. .+++++ ...+|+++.+.|+ |||+++.....
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk---pGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK---KGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC---CCCEEEEEcCC
Confidence 21 11 112222 2468999999999 79998865543
No 144
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.57 E-value=8.8e-07 Score=67.27 Aligned_cols=116 Identities=18% Similarity=0.291 Sum_probs=93.5
Q ss_pred chhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-C---
Q 023625 96 SELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-A--- 169 (279)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~--- 169 (279)
+.++++.+++.++ +..+.-|+++|.|+|.++.+++++. +....+.++. ++......+.-+.+.++.||.+. .
T Consensus 33 Ss~lA~~M~s~I~--pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l 110 (194)
T COG3963 33 SSILARKMASVID--PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL 110 (194)
T ss_pred cHHHHHHHHhccC--cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH
Confidence 4556666777776 5677899999999999999999875 4456778877 77777666655778899999876 2
Q ss_pred --C--CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 170 --I--PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 170 --~--~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
. +.+|.|++.-.+-.++....+++|+.+..-|+ +||.++.+..-
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~---~gg~lvqftYg 158 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP---AGGPLVQFTYG 158 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC---CCCeEEEEEec
Confidence 1 24999999999999999999999999999999 78988876654
No 145
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.57 E-value=3.3e-07 Score=75.75 Aligned_cols=141 Identities=18% Similarity=0.328 Sum_probs=80.4
Q ss_pred CCCEEEEecCCccH--HHHHHH-HHCCCCeEEEeeC-hhHHhhccc---CCCC--eEEeeCCCCCCC-----C---c-cc
Q 023625 113 GLKSLVDVAGGTGI--MARAIA-TAFPDIKCTVFDL-PHVVDNLQG---TNDN--LDFLGGNMFEAI-----P---Q-AN 174 (279)
Q Consensus 113 ~~~~vlDvG~G~G~--~~~~l~-~~~p~~~~~~~D~-~~~~~~a~~---~~~r--i~~~~~d~~~~~-----~---~-~D 174 (279)
+...+||+|||-=. ..-+++ +..|+++++.+|. |-++..++. ..++ ..++.+|+.+|- | + .|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 67899999999542 333444 4579999999999 888887774 2234 899999998741 1 1 23
Q ss_pred -----eeeehhhhccCCh-hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCH
Q 023625 175 -----AVLLKWILHNWND-EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSV 248 (279)
Q Consensus 175 -----~v~~~~vlh~~~~-~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~ 248 (279)
.+++..+||+++| ++...+++.++++|. ||+.|+|.....+.. +. ......+.+-........|+.
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~la---pGS~L~ish~t~d~~----p~-~~~~~~~~~~~~~~~~~~Rs~ 219 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALA---PGSYLAISHATDDGA----PE-RAEALEAVYAQAGSPGRPRSR 219 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS----TT-EEEEEEEB-TTS----HH-HHHHHHHHHHHCCS----B-H
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCC---CCceEEEEecCCCCC----HH-HHHHHHHHHHcCCCCceecCH
Confidence 6788999999988 788999999999999 688877776654321 11 111122222222334778899
Q ss_pred HHHHHHHHHCCCcee
Q 023625 249 DDWKKLFLAAGFSHY 263 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~ 263 (279)
+|+.++|. ||..+
T Consensus 220 ~ei~~~f~--g~elv 232 (267)
T PF04672_consen 220 EEIAAFFD--GLELV 232 (267)
T ss_dssp HHHHHCCT--TSEE-
T ss_pred HHHHHHcC--CCccC
Confidence 99999987 67654
No 146
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=8e-07 Score=80.48 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=76.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCCC--ccceeeeh--
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAIP--QANAVLLK-- 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~~--~~D~v~~~-- 179 (279)
..++.+|||+|||+|..+..+++..+ ..+++++|+ +..++.+++ . ..+++++.+|..+..+ .||+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 34568999999999999999988764 458999999 888877763 1 2468999999876222 59999862
Q ss_pred ----hhh-------ccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 180 ----WIL-------HNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 180 ----~vl-------h~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.++ ..+++++ -.++|.++.+.|+ |||++++....+.
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk---pgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK---PGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC---CCcEEEEEeCCCC
Confidence 111 1233332 2468999999999 7999998775443
No 147
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.55 E-value=8.2e-07 Score=69.89 Aligned_cols=102 Identities=19% Similarity=0.248 Sum_probs=67.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCCCC------C-ccce
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFEAI------P-QANA 175 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~------~-~~D~ 175 (279)
.....+|||+|||+|..++.+++..+..+++..|.+++++..+. ...++.+...|..++. + .||+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 45678999999999999999999877789999999667765542 2467888888876522 2 4999
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+.+.++++ ++....+++-+.+.++ |+|.+++.-...
T Consensus 123 IlasDv~Y~--~~~~~~L~~tl~~ll~---~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYD--EELFEPLVRTLKRLLK---PNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S---GGGHHHHHHHHHHHBT---T-TTEEEEEE-S
T ss_pred EEEecccch--HHHHHHHHHHHHHHhC---CCCEEEEEeCEe
Confidence 999999984 5677889999999999 577777665544
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.53 E-value=4.9e-07 Score=72.45 Aligned_cols=93 Identities=18% Similarity=0.335 Sum_probs=68.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC----CC--ccceeeehhh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA----IP--QANAVLLKWI 181 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~----~~--~~D~v~~~~v 181 (279)
...+||||||.|.++..+++.+|+..++++|+ ...+..+.. .-.++.++.+|...- ++ ..|-|++.
T Consensus 18 ~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~-- 95 (195)
T PF02390_consen 18 NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN-- 95 (195)
T ss_dssp CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE--
T ss_pred CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe--
Confidence 34899999999999999999999999999999 666665542 247999999998761 22 36666553
Q ss_pred hccCChh-----------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDE-----------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~-----------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+||+ -...+|+.+++.|+ |||.|.+..
T Consensus 96 ---FPDPWpK~rH~krRl~~~~fl~~~~~~L~---~gG~l~~~T 133 (195)
T PF02390_consen 96 ---FPDPWPKKRHHKRRLVNPEFLELLARVLK---PGGELYFAT 133 (195)
T ss_dssp ---S-----SGGGGGGSTTSHHHHHHHHHHEE---EEEEEEEEE
T ss_pred ---CCCCCcccchhhhhcCCchHHHHHHHHcC---CCCEEEEEe
Confidence 2333 12478999999999 799988765
No 149
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.52 E-value=3.9e-07 Score=78.79 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=72.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------------CCCeEEeeCCCCCC-----C-
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------------NDNLDFLGGNMFEA-----I- 170 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------------~~ri~~~~~d~~~~-----~- 170 (279)
+..+|||+|||.|.-+....+... ..++++|+ +..++.|++. .-...|+.+|.+.. .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 678999999999998888877643 37999999 7778777630 12346788888752 1
Q ss_pred -C--ccceeeehhhhccC--ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 171 -P--QANAVLLKWILHNW--NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 171 -~--~~D~v~~~~vlh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ .||+|-+...||.. +.+.+..+|+++.+.|+ |||.++..-
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk---~GG~FIgT~ 186 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK---PGGYFIGTT 186 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC---CCCEEEEEe
Confidence 2 59999999999983 56677789999999999 799887654
No 150
>PLN02476 O-methyltransferase
Probab=98.48 E-value=1.1e-06 Score=73.71 Aligned_cols=99 Identities=11% Similarity=0.153 Sum_probs=77.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C------Ccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I------PQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~------~~~ 173 (279)
..+.++|||||+++|..+..+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+- . ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45678999999999999999999876 568999999 877887764 457999999998651 1 259
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+|++- -+..+-...++.+.+.|+ |||.|++-+..+
T Consensus 196 D~VFID-----a~K~~Y~~y~e~~l~lL~---~GGvIV~DNvL~ 231 (278)
T PLN02476 196 DFAFVD-----ADKRMYQDYFELLLQLVR---VGGVIVMDNVLW 231 (278)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcC---CCcEEEEecCcc
Confidence 999984 345667889999999999 688665544433
No 151
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.47 E-value=1.7e-06 Score=78.13 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=77.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-C----C--Ccccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-A----I--PQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~----~--~~~D~v 176 (279)
..++.+|||+|||+|..+..+++... ..+++++|+ +..++.+++ . ..+++++.+|..+ + . ..||.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 34678999999999999999999864 468999999 888877663 1 2468999999875 2 1 249999
Q ss_pred eeh------hhhccCCh-------hH-------HHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 177 LLK------WILHNWND-------EE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 177 ~~~------~vlh~~~~-------~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++- .+++..++ ++ -.++|+++.+.|+ |||+++.....+
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk---pgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK---PGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 972 24443332 22 3688999999999 799998866443
No 152
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.46 E-value=1.8e-07 Score=75.43 Aligned_cols=97 Identities=21% Similarity=0.341 Sum_probs=75.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-------CCcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-------IPQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-------~~~~ 173 (279)
..+.++||+||+++|.-+..+++..| +.+++.+|. ++..+.|++ ..+||+++.+|..+ + ...|
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 34678999999999999999999987 589999999 888888874 35799999999864 1 1259
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|+|++-. ...+-...+..+.+.|+ |||.|++-+.
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~---~ggvii~DN~ 156 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLR---PGGVIIADNV 156 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEE---EEEEEEEETT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhcc---CCeEEEEccc
Confidence 9999843 45667788999999999 5665554443
No 153
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.46 E-value=1.2e-06 Score=73.64 Aligned_cols=83 Identities=14% Similarity=0.324 Sum_probs=62.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCCccce
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIPQANA 175 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~~D~ 175 (279)
..+++... ..+..+|||||||+|.++..++++. .+++++|+ +.+++.+++. .++++++.+|+.+ +.+.+|.
T Consensus 19 ~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 19 DRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 44555443 4567899999999999999999983 57999999 7888777642 3689999999988 6677898
Q ss_pred eeehhhhccCChh
Q 023625 176 VLLKWILHNWNDE 188 (279)
Q Consensus 176 v~~~~vlh~~~~~ 188 (279)
|++.-.. +++.+
T Consensus 95 Vv~NlPy-~i~s~ 106 (258)
T PRK14896 95 VVSNLPY-QISSP 106 (258)
T ss_pred EEEcCCc-ccCcH
Confidence 8775443 44433
No 154
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.45 E-value=2.2e-06 Score=77.08 Aligned_cols=105 Identities=12% Similarity=0.181 Sum_probs=76.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C--CC-ccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A--IP-QANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~--~~-~~D~v~~~ 179 (279)
..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++. ..+++++.+|... + .+ .||.|++-
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 4567899999999999999999986 4578999999 8888777631 2458899999865 2 12 49999862
Q ss_pred ------hhhc-------cCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 180 ------WILH-------NWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 180 ------~vlh-------~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.++. .++.+ .-.++|.++.+.|+ |||.++.....+.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk---pGG~LvYsTCs~~ 370 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE---KGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEECCCC
Confidence 1222 12221 22678999999999 7998877665443
No 155
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.44 E-value=8.5e-07 Score=75.04 Aligned_cols=82 Identities=15% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC--CCCeEEeeCCCCC-CCCcc--c
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT--NDNLDFLGGNMFE-AIPQA--N 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~--~~ri~~~~~d~~~-~~~~~--D 174 (279)
..+++.+. ..+..+|||||||+|.++..++++.+ +++++|+ +.+++.+++. .++++++.+|+.+ +.+.. |
T Consensus 32 ~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 32 DKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 33444443 45678999999999999999999975 7999999 8888887752 2689999999987 44443 5
Q ss_pred eeeehhhhccCCh
Q 023625 175 AVLLKWILHNWND 187 (279)
Q Consensus 175 ~v~~~~vlh~~~~ 187 (279)
.|+. +.-++.+.
T Consensus 108 ~vv~-NlPY~iss 119 (272)
T PRK00274 108 KVVA-NLPYNITT 119 (272)
T ss_pred eEEE-eCCccchH
Confidence 5544 33343433
No 156
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.43 E-value=2.4e-06 Score=71.94 Aligned_cols=104 Identities=16% Similarity=0.264 Sum_probs=75.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC-C--CCccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE-A--IPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~-~--~~~~D~v~~~~ 180 (279)
..++.+|||+|||+|..+..+++... ...++++|+ +..++.+++ . ..+++++..|... + .+.||+|++--
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 35678999999999999999999875 358999999 888776653 1 2468888888654 2 23599998621
Q ss_pred ------hhc-------cCChhHH-------HHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 181 ------ILH-------NWNDEES-------VKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 181 ------vlh-------~~~~~~~-------~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++. .|++++. .++|+++.+.|+ |||+|+.....+
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk---pgG~lvYstcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK---PGGVLVYSTCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCC
Confidence 221 2333322 569999999999 799988765443
No 157
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.43 E-value=1.6e-06 Score=72.56 Aligned_cols=90 Identities=13% Similarity=0.279 Sum_probs=63.0
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-CCCccc-
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-AIPQAN- 174 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~~~~~D- 174 (279)
..+++..+ ..+..+|||||||+|.++..++++.+ +++++|. +.+++.++.. .++++++.+|+.+ +.+.+|
T Consensus 19 ~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 19 QKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 34555444 45678999999999999999999986 4889998 7777776642 3689999999987 555566
Q ss_pred -eeeehhhhccCChhHHHHHHHHHH
Q 023625 175 -AVLLKWILHNWNDEESVKLLKKCK 198 (279)
Q Consensus 175 -~v~~~~vlh~~~~~~~~~~L~~~~ 198 (279)
.+++++.-++++. .++.++.
T Consensus 95 ~~~vvsNlPy~i~~----~il~~ll 115 (253)
T TIGR00755 95 QLKVVSNLPYNISS----PLIFKLL 115 (253)
T ss_pred cceEEEcCChhhHH----HHHHHHh
Confidence 3334444444444 4444444
No 158
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=8.3e-06 Score=63.55 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=54.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCCccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIPQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~~~D~v~~~ 179 (279)
.+++|+|+|||||.+++..+-..|. +++++|+ |+.++.+++ ...+++|+..|..+....+|.++++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 4678999999999999988877654 8999999 999988875 3468999999987655567777764
No 159
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.40 E-value=2.8e-06 Score=72.96 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=90.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEee----CCCCCCC----Ccccee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLG----GNMFEAI----PQANAV 176 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~----~d~~~~~----~~~D~v 176 (279)
...++||||||+|.....++.+.+++++++.|+ +.+++.|+. ..++|++.. .+++... ..||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457999999999999888888889999999999 888888773 346787754 2334321 249999
Q ss_pred eehhhhccCChhH---HHHHHHHHH----------------HhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcch-h
Q 023625 177 LLKWILHNWNDEE---SVKLLKKCK----------------EAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDI-L 236 (279)
Q Consensus 177 ~~~~vlh~~~~~~---~~~~L~~~~----------------~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~-~ 236 (279)
++.=.+|.-..+. ...-.++.+ +.+. +||.+-++..+..+.. .+..- .
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~---~GGe~~fi~~mi~eS~---------~~~~~~g 261 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWC---EGGEVAFIKRMIEESK---------AFAKQVL 261 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheee---CCcEeeeehHhhHHHH---------HHHhhCc
Confidence 9977776433331 112222222 2222 3555555554443321 01010 1
Q ss_pred hhhhcCCeeCCHHHHHHHHHHCCCceeEEEec
Q 023625 237 MVSLFRGKERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 237 ~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
.....-|+.-+.+.+.+.|++.|.+.+.+..+
T Consensus 262 wftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 262 WFTSLVSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEEEeeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 11111255568999999999999987777665
No 160
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.39 E-value=6.4e-06 Score=65.76 Aligned_cols=122 Identities=14% Similarity=0.197 Sum_probs=88.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CCC-----ccceeeehhhhccCCh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AIP-----QANAVLLKWILHNWND 187 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~-----~~D~v~~~~vlh~~~~ 187 (279)
.-++|||||=+....+. .++-..++-+|+.+. .-.+...||++ |.| .||+|.++.||...|+
T Consensus 52 ~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~---------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~ 119 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ---------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPD 119 (219)
T ss_pred cceEEeecccCCCCccc---ccCceeeEEeecCCC---------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCC
Confidence 36999999976665433 345567888998431 22345678887 665 3999999999999885
Q ss_pred -hHHHHHHHHHHHhCCCCCCCcE-----EEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCc
Q 023625 188 -EESVKLLKKCKEAIPSKDEGGK-----VIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFS 261 (279)
Q Consensus 188 -~~~~~~L~~~~~~L~~~~pgG~-----lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~ 261 (279)
.+.-++|+++++.|+ |+|. ++|+- |.+. ..+++..+.+.|.++++.-||.
T Consensus 120 p~~RG~Ml~r~~~fL~---~~g~~~~~~LFlVl---P~~C------------------v~NSRy~~~~~l~~im~~LGf~ 175 (219)
T PF11968_consen 120 PKQRGEMLRRAHKFLK---PPGLSLFPSLFLVL---PLPC------------------VTNSRYMTEERLREIMESLGFT 175 (219)
T ss_pred HHHHHHHHHHHHHHhC---CCCccCcceEEEEe---CchH------------------hhcccccCHHHHHHHHHhCCcE
Confidence 566799999999999 6787 66653 2211 1345556889999999999999
Q ss_pred eeEEEecCCc
Q 023625 262 HYKITPMLGV 271 (279)
Q Consensus 262 ~~~~~~~~~~ 271 (279)
.++....+..
T Consensus 176 ~~~~~~~~Kl 185 (219)
T PF11968_consen 176 RVKYKKSKKL 185 (219)
T ss_pred EEEEEecCeE
Confidence 9888766543
No 161
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.38 E-value=2.3e-06 Score=69.16 Aligned_cols=100 Identities=18% Similarity=0.321 Sum_probs=79.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEee-CCCCC---C--CCcccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLG-GNMFE---A--IPQANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~-~d~~~---~--~~~~D~v 176 (279)
..+.++||+||.+.|.-++.++...| +.+.+.+|. ++..+.|++ ..++|+.+. +|..+ . .+.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 46789999999999999999999999 789999999 889988884 467888888 57665 2 2369999
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
|+- -...+-...|..+.+.|+ ||| ++++|.+...
T Consensus 137 FID-----adK~~yp~~le~~~~lLr---~GG-liv~DNvl~~ 170 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLR---PGG-LIVADNVLFG 170 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhC---CCc-EEEEeecccC
Confidence 983 345566789999999999 577 4555555544
No 162
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.37 E-value=8.6e-07 Score=70.38 Aligned_cols=94 Identities=11% Similarity=0.228 Sum_probs=68.8
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--CC--ccceeeehhhhc-----
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--IP--QANAVLLKWILH----- 183 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~~--~~D~v~~~~vlh----- 183 (279)
..-|||||||+|..+..+.+. +...+++|+ |.|++.|.+..-.-.++.+|+-+. ++ .||.+|+...+.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA 128 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNA 128 (270)
T ss_pred CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeeccc
Confidence 678999999999998877764 578999999 999999885211245777888774 32 499988765542
Q ss_pred ----cCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 184 ----NWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 184 ----~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+.+......++..++.+|+ +|++.++
T Consensus 129 ~~s~~~P~~Rl~~FF~tLy~~l~---rg~raV~ 158 (270)
T KOG1541|consen 129 DKSLHVPKKRLLRFFGTLYSCLK---RGARAVL 158 (270)
T ss_pred CccccChHHHHHHHhhhhhhhhc---cCceeEE
Confidence 1233455667888999999 6887665
No 163
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.37 E-value=3.3e-06 Score=71.12 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=71.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC-ccceeeehhhhccC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP-QANAVLLKWILHNW 185 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~ 185 (279)
.+.|||||||+|.++.-.+++.. -++..++..++.+.|+. ..+||.++.|.+.+ ..| .+|++++--.=..+
T Consensus 178 ~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG~mL 256 (517)
T KOG1500|consen 178 DKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMGYML 256 (517)
T ss_pred CcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccchhhh
Confidence 57899999999999987777643 37888888888888874 47999999999988 778 59999874332333
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
-.+...+-.-.+++-|+ |.|+++
T Consensus 257 ~NERMLEsYl~Ark~l~---P~GkMf 279 (517)
T KOG1500|consen 257 VNERMLESYLHARKWLK---PNGKMF 279 (517)
T ss_pred hhHHHHHHHHHHHhhcC---CCCccc
Confidence 34444455556779999 688765
No 164
>PLN02823 spermine synthase
Probab=98.32 E-value=3.3e-06 Score=73.12 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=72.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCCC---C-Cccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFEA---I-PQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~~---~-~~~D~v~ 177 (279)
+..++||.||||.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|...- . ..||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 3467999999999999999998766778999999 999998874 147999999998762 2 2599999
Q ss_pred ehhhhccCC--hh---HHHHHHH-HHHHhCCCCCCCcEEEE
Q 023625 178 LKWILHNWN--DE---ESVKLLK-KCKEAIPSKDEGGKVII 212 (279)
Q Consensus 178 ~~~vlh~~~--~~---~~~~~L~-~~~~~L~~~~pgG~lli 212 (279)
+-. ...+. +. -...+++ .+++.|+ |||.+++
T Consensus 182 ~D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~---p~Gvlv~ 218 (336)
T PLN02823 182 GDL-ADPVEGGPCYQLYTKSFYERIVKPKLN---PGGIFVT 218 (336)
T ss_pred ecC-CCccccCcchhhccHHHHHHHHHHhcC---CCcEEEE
Confidence 852 11110 00 0235677 7899999 7887655
No 165
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.32 E-value=3.2e-06 Score=68.11 Aligned_cols=109 Identities=12% Similarity=0.213 Sum_probs=65.3
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--------------CCCCeEEeeCCCC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG--------------TNDNLDFLGGNMF 167 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------------~~~ri~~~~~d~~ 167 (279)
+++.+. +.+...++|+|||.|......+...+--+++++++ +...+.|+. ...++++..+||.
T Consensus 34 il~~~~--l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 34 ILDELN--LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp HHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred HHHHhC--CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 444444 66788999999999999998887776555999998 655544431 1467899999998
Q ss_pred C-CC-----CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 168 E-AI-----PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 168 ~-~~-----~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
+ +. ..+|+|++.+.+ ++++ ...-|.+....|| +|.+|+-.....+.
T Consensus 112 ~~~~~~~~~s~AdvVf~Nn~~--F~~~-l~~~L~~~~~~lk---~G~~IIs~~~~~~~ 163 (205)
T PF08123_consen 112 DPDFVKDIWSDADVVFVNNTC--FDPD-LNLALAELLLELK---PGARIISTKPFCPR 163 (205)
T ss_dssp THHHHHHHGHC-SEEEE--TT--T-HH-HHHHHHHHHTTS----TT-EEEESS-SS-T
T ss_pred ccHhHhhhhcCCCEEEEeccc--cCHH-HHHHHHHHHhcCC---CCCEEEECCCcCCC
Confidence 7 32 369999998875 4554 4555677778888 68777765555544
No 166
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.30 E-value=3e-06 Score=76.73 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=64.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCC-----C--Cccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEA-----I--PQANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~-----~--~~~D~v~ 177 (279)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|++. .++++++.+|+.+. . ..||+|+
T Consensus 295 ~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi 372 (443)
T PRK13168 295 PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVL 372 (443)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEE
Confidence 3456799999999999999999875 58999999 8888887741 25799999998642 2 2489998
Q ss_pred ehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 178 LKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 178 ~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+. -|-.....+++.+.+ ++ |++.+++
T Consensus 373 ~d-----PPr~g~~~~~~~l~~-~~---~~~ivyv 398 (443)
T PRK13168 373 LD-----PPRAGAAEVMQALAK-LG---PKRIVYV 398 (443)
T ss_pred EC-----cCCcChHHHHHHHHh-cC---CCeEEEE
Confidence 72 222223345555555 46 5665555
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.30 E-value=3e-06 Score=76.24 Aligned_cols=129 Identities=18% Similarity=0.252 Sum_probs=79.5
Q ss_pred ChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhhh--CCCCEEEEecCCccHHHHHHHHHC----CCCeEEEeeC-
Q 023625 73 KVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEVF--EGLKSLVDVAGGTGIMARAIATAF----PDIKCTVFDL- 145 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~- 145 (279)
..|+.+++|+..-..|.+|+.. .+.+...... .....|+|||||+|-++...+++. -..++..++-
T Consensus 151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn 223 (448)
T PF05185_consen 151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN 223 (448)
T ss_dssp HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence 3478888888877777777543 1222111000 125689999999999988776654 3468999997
Q ss_pred hhHHhhcc------cCCCCeEEeeCCCCC-CCC-ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 146 PHVVDNLQ------GTNDNLDFLGGNMFE-AIP-QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 146 ~~~~~~a~------~~~~ri~~~~~d~~~-~~~-~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
+.++...+ ...++|+++.+|+.+ ..| .+|+|++-..=.....+-....|....+.|+ |||.++
T Consensus 224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk---p~Gi~I 294 (448)
T PF05185_consen 224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLK---PDGIMI 294 (448)
T ss_dssp THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEE---EEEEEE
T ss_pred HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcC---CCCEEe
Confidence 54443321 236899999999998 556 6999987543221222344566888888999 677543
No 168
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.30 E-value=6.2e-06 Score=69.55 Aligned_cols=97 Identities=14% Similarity=0.284 Sum_probs=75.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CCC-ccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AIP-QANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~~-~~D~v~~ 178 (279)
..++||-||||.|..+.++++..+-.+++.+|+ +.+++.+++ ..+|++++.+|..+ ..+ .||+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 346999999999999999999998889999999 999998884 14899999999876 233 5999998
Q ss_pred hhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 179 KWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 179 ~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
-..=. ..+. -...+++.++++|+ ++|.++..
T Consensus 156 D~tdp-~gp~~~Lft~eFy~~~~~~L~---~~Gi~v~q 189 (282)
T COG0421 156 DSTDP-VGPAEALFTEEFYEGCRRALK---EDGIFVAQ 189 (282)
T ss_pred cCCCC-CCcccccCCHHHHHHHHHhcC---CCcEEEEe
Confidence 43211 0110 12578999999999 68876665
No 169
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.29 E-value=4.1e-06 Score=71.43 Aligned_cols=89 Identities=15% Similarity=0.319 Sum_probs=65.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCCc
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIPQ 172 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~~ 172 (279)
..+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ ..++++++.+|+.+ +.+.
T Consensus 26 ~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 26 DKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 34555443 5567899999999999999999874 46899999 788877663 13689999999987 5667
Q ss_pred cceeeehhhhccCChhHHHHHH
Q 023625 173 ANAVLLKWILHNWNDEESVKLL 194 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L 194 (279)
+|+++. +.-++++.+...++|
T Consensus 102 ~d~Vva-NlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCVA-NVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEEe-cCCcccCcHHHHHHH
Confidence 887765 444556665555555
No 170
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.28 E-value=4.6e-06 Score=69.08 Aligned_cols=98 Identities=17% Similarity=0.226 Sum_probs=76.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--C-C-------Cc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--A-I-------PQ 172 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~-~-------~~ 172 (279)
..+.++||+||.++|.-+..+++..| +.+++.+|. ++..+.|++ ..++|+++.||..+ + . ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 34678999999999999999999874 679999999 777777763 46899999999865 2 1 35
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
||+|++-. ....-...++.+.+.|+ |||.| ++|.++
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~---~GGvi-v~DNvl 192 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVK---VGGVI-GYDNTL 192 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcC---CCeEE-EEcCCC
Confidence 99999843 45566788889999999 67764 445443
No 171
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.24 E-value=1.9e-05 Score=63.59 Aligned_cols=125 Identities=13% Similarity=0.237 Sum_probs=86.7
Q ss_pred EEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--c-cceeeehhhhccCC
Q 023625 117 LVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--Q-ANAVLLKWILHNWN 186 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~-~D~v~~~~vlh~~~ 186 (279)
|.||||-+|.+.+.|+++..--+++..|+ +.-++.|++ +.+++++..+|-+++++ . .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988888999999 888888774 46899999999888644 3 788887653 4
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
-....++|.+....++ ...++++ .++. ....++++|.+.||.+.+-.
T Consensus 77 G~lI~~ILe~~~~~~~---~~~~lIL-qP~~-----------------------------~~~~LR~~L~~~gf~I~~E~ 123 (205)
T PF04816_consen 77 GELIIEILEAGPEKLS---SAKRLIL-QPNT-----------------------------HAYELRRWLYENGFEIIDED 123 (205)
T ss_dssp HHHHHHHHHHTGGGGT---T--EEEE-EESS------------------------------HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHhhHHHhc---cCCeEEE-eCCC-----------------------------ChHHHHHHHHHCCCEEEEeE
Confidence 4567788888877776 2334433 2211 45678999999999987654
Q ss_pred ec---CCceeEEEEe
Q 023625 267 PM---LGVRSLIEAY 278 (279)
Q Consensus 267 ~~---~~~~~~i~~~ 278 (279)
-+ ..++.||.+.
T Consensus 124 lv~e~~~~YeIi~~~ 138 (205)
T PF04816_consen 124 LVEENGRFYEIIVAE 138 (205)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred EEeECCEEEEEEEEE
Confidence 33 3455666654
No 172
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.20 E-value=1e-05 Score=64.96 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=63.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCCC---C-ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEAI---P-QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~~---~-~~D~v~~~~vl 182 (279)
...+|||+|||+|.++.+++.+.. .+++++|. +..++.+++ . ..+++++.+|+.+.. . .||+|++.=..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 457999999999999997666553 58999999 888776663 1 257999999987622 2 49999985432
Q ss_pred ccCChhHHHHHHHHHHH--hCCCCCCCcEEEEEeee
Q 023625 183 HNWNDEESVKLLKKCKE--AIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~--~L~~~~pgG~lli~e~~ 216 (279)
+. .....++..+.+ .++ |++ ++++++.
T Consensus 132 ~~---g~~~~~l~~l~~~~~l~---~~~-iv~ve~~ 160 (199)
T PRK10909 132 RK---GLLEETINLLEDNGWLA---DEA-LIYVESE 160 (199)
T ss_pred CC---ChHHHHHHHHHHCCCcC---CCc-EEEEEec
Confidence 21 112234444443 366 555 5555543
No 173
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.19 E-value=1e-05 Score=67.94 Aligned_cols=98 Identities=15% Similarity=0.181 Sum_probs=74.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------C----CCCeEEeeCCCCCC---------
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------T----NDNLDFLGGNMFEA--------- 169 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~----~~ri~~~~~d~~~~--------- 169 (279)
.++...++|+|||-|.-++..-++.- -.+++.|+ .-.++.|+. . .=...|+++|.+..
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~ 193 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK 193 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence 36778899999999999887776532 26999999 555777763 1 11367888987641
Q ss_pred CCccceeeehhhhcc-C-ChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 170 IPQANAVLLKWILHN-W-NDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 170 ~~~~D~v~~~~vlh~-~-~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.|.||+|-+..++|. | +.+.+..+|+|+++.|+ |||.++-
T Consensus 194 dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk---pGG~FIg 235 (389)
T KOG1975|consen 194 DPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK---PGGVFIG 235 (389)
T ss_pred CCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC---CCcEEEE
Confidence 235999999999987 3 55678899999999999 7996653
No 174
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.17 E-value=1.2e-05 Score=68.56 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh 183 (279)
..+.|||||||+|.+++-.+++. ..++.++|-..+++.|++ ..+.|+++.|.+.+ .+| ..|+|++-+.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 57899999999999999888886 458999998888777764 46789999998887 444 699998866443
Q ss_pred cCC-hhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 184 NWN-DEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 184 ~~~-~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.+- +.-.-.+|-.=-+-|+ |||.++
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~---~~G~i~ 164 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLK---EGGLIY 164 (346)
T ss_pred HHHHhhhhhhhhhhhhhccC---CCceEc
Confidence 322 2222233333335678 688654
No 175
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.17 E-value=9.1e-06 Score=66.40 Aligned_cols=92 Identities=17% Similarity=0.284 Sum_probs=68.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cCCC-CeEEeeCCCCC--C-C-C--ccceeeehhhh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GTND-NLDFLGGNMFE--A-I-P--QANAVLLKWIL 182 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~-ri~~~~~d~~~--~-~-~--~~D~v~~~~vl 182 (279)
..+||||||.|.+...+|+++|+..++++++ ...+..+. +..- ++.++++|... + . + +.|-|++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5899999999999999999999999999998 66655543 2333 89999999764 1 1 2 35655552
Q ss_pred ccCChh-----------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDE-----------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~-----------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+||+ -....|+.+.+.|+ |||.|.+..
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk---~gG~l~~aT 164 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLK---PGGVLHFAT 164 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHcc---CCCEEEEEe
Confidence 2332 12468999999999 799988755
No 176
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.14 E-value=8.6e-06 Score=77.77 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=71.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCCC---CC-ccceeeeh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFEA---IP-QANAVLLK 179 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~---~~-~~D~v~~~ 179 (279)
..+++|||+|||+|.++..+++. ...+++.+|+ +.+++.+++ .. ++++++.+|.++. .+ .||+|++.
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 34689999999999999999986 3346999999 888888874 22 5899999998762 23 59999983
Q ss_pred hhh--c------cC-ChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 180 WIL--H------NW-NDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 180 ~vl--h------~~-~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
=.- . .+ ...+-..+++.+.+.|+ |||.+++.
T Consensus 616 PP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~---~gG~l~~~ 655 (702)
T PRK11783 616 PPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR---PGGTLYFS 655 (702)
T ss_pred CCCCCCCCccchhhhHHHHHHHHHHHHHHHcC---CCCEEEEE
Confidence 110 0 00 11234578888999999 79977654
No 177
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.13 E-value=1.6e-05 Score=67.28 Aligned_cols=100 Identities=13% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccC---CC--CeEEeeCCCCC---CCCccceeeehhhhc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQGT---ND--NLDFLGGNMFE---AIPQANAVLLKWILH 183 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~---~~--ri~~~~~d~~~---~~~~~D~v~~~~vlh 183 (279)
..+|||+|+|+|..+-+..+.++.. +++++|. +.+++.++.+ .. +......++.. +.+..|+|+++++|-
T Consensus 34 P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~L~ 113 (274)
T PF09243_consen 34 PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYVLN 113 (274)
T ss_pred CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehhhh
Confidence 4699999999999999999988854 5889998 7887766631 01 11101112221 234569999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.+++++...+++++.+.+. +.|+|+|.-.+
T Consensus 114 EL~~~~r~~lv~~LW~~~~-----~~LVlVEpGt~ 143 (274)
T PF09243_consen 114 ELPSAARAELVRSLWNKTA-----PVLVLVEPGTP 143 (274)
T ss_pred cCCchHHHHHHHHHHHhcc-----CcEEEEcCCCh
Confidence 9999888899999988877 48999986443
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=98.12 E-value=2e-05 Score=65.77 Aligned_cols=88 Identities=15% Similarity=0.185 Sum_probs=68.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCCCC-Cccceeeehh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFEAI-PQANAVLLKW 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~~~-~~~D~v~~~~ 180 (279)
+..++||=||||.|..++++++. |. +++.+|+ +.+++.+++ ..+|++++.. +.+.. ..||+|+.-.
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcC
Confidence 56789999999999999999996 54 9999999 889988875 2578888762 32222 4699999854
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
. .+ ....+.++++|+ |||.++.
T Consensus 148 ~----~~---~~fy~~~~~~L~---~~Gi~v~ 169 (262)
T PRK00536 148 E----PD---IHKIDGLKRMLK---EDGVFIS 169 (262)
T ss_pred C----CC---hHHHHHHHHhcC---CCcEEEE
Confidence 2 22 356788999999 7887665
No 179
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.10 E-value=2.3e-05 Score=69.68 Aligned_cols=99 Identities=11% Similarity=0.118 Sum_probs=69.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CC-CCeEEeeCCCCCCC------C-cccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TN-DNLDFLGGNMFEAI------P-QANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~-~ri~~~~~d~~~~~------~-~~D~v 176 (279)
.+..+|||+|||+|.++.+.+.. ...+++.+|+ +.+++.+++ .. ++++++.+|.++.. . .||+|
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlV 297 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVI 297 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEE
Confidence 45689999999999998876643 3448999999 888887764 22 47999999998621 2 59999
Q ss_pred eehhhhccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHNWND-------EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++.=.-..-+. ..-..+++.+.+.|+ |||.++.+.
T Consensus 298 ilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk---~gG~lv~~s 339 (396)
T PRK15128 298 VMDPPKFVENKSQLMGACRGYKDINMLAIQLLN---PGGILLTFS 339 (396)
T ss_pred EECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC---CCeEEEEEe
Confidence 97522110111 123455667889999 799887654
No 180
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.08 E-value=9.8e-06 Score=67.07 Aligned_cols=97 Identities=13% Similarity=0.146 Sum_probs=76.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCC--ccceeeehhhhccCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWN 186 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~ 186 (279)
.+....++|+|||.|-+.. .+|.+..++.|+ ...+..++.. +.......|+.. |.+ .+|..+...++|+++
T Consensus 43 ~~~gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~-~~~~~~~ad~l~~p~~~~s~d~~lsiavihhls 117 (293)
T KOG1331|consen 43 QPTGSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS-GGDNVCRADALKLPFREESFDAALSIAVIHHLS 117 (293)
T ss_pred cCCcceeeecccCCcccCc----CCCcceeeecchhhhhccccccC-CCceeehhhhhcCCCCCCccccchhhhhhhhhh
Confidence 3457889999999999863 358889999999 6777777754 332566778877 544 599999999999987
Q ss_pred hh-HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 187 DE-ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 187 ~~-~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
-. ...++++++.+.++ |||..+|.-.
T Consensus 118 T~~RR~~~l~e~~r~lr---pgg~~lvyvw 144 (293)
T KOG1331|consen 118 TRERRERALEELLRVLR---PGGNALVYVW 144 (293)
T ss_pred hHHHHHHHHHHHHHHhc---CCCceEEEEe
Confidence 64 55689999999999 7998776543
No 181
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.6e-05 Score=62.83 Aligned_cols=100 Identities=15% Similarity=0.248 Sum_probs=72.1
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhccc---------------CCCCeEEeeC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQG---------------TNDNLDFLGG 164 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~---------------~~~ri~~~~~ 164 (279)
+.+.++..+.++.+.||||+|+|.++..++.-- +....+++|. |+.++.+++ ...++.++.|
T Consensus 72 ~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvG 151 (237)
T KOG1661|consen 72 ALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVG 151 (237)
T ss_pred HHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeC
Confidence 455555457788999999999999998887543 3333488898 888877653 1467889999
Q ss_pred CCCCC---CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 165 NMFEA---IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 165 d~~~~---~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|...- ...||.|.....- .++.++..+-|+ |||+++|-
T Consensus 152 Dgr~g~~e~a~YDaIhvGAaa--------~~~pq~l~dqL~---~gGrllip 192 (237)
T KOG1661|consen 152 DGRKGYAEQAPYDAIHVGAAA--------SELPQELLDQLK---PGGRLLIP 192 (237)
T ss_pred CccccCCccCCcceEEEccCc--------cccHHHHHHhhc---cCCeEEEe
Confidence 98762 3359999987432 345666677788 69998873
No 182
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.06 E-value=2.1e-05 Score=68.03 Aligned_cols=65 Identities=18% Similarity=0.214 Sum_probs=52.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-C--C-Cccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-A--I-PQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~--~-~~~D~v~~~ 179 (279)
+..+|||+|||+|.++..+++. ..+++++|. +.+++.|++. .++++|+.+|+.+ . . ..+|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 4579999999999999999984 468999999 8888877641 2579999999865 2 2 248999874
No 183
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.06 E-value=5.2e-05 Score=65.21 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=74.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC----CCeEEEeeC-hhHHhhccc-C----CCCeEE--eeCCCCCC---C-----C
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP----DIKCTVFDL-PHVVDNLQG-T----NDNLDF--LGGNMFEA---I-----P 171 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~~-~----~~ri~~--~~~d~~~~---~-----~ 171 (279)
++...|+|+|||+|.=...|+++.. ..+++.+|+ .+.++.+.. + -+.+++ +.+|+.+. . +
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 4566899999999998887777663 467999999 667766542 1 144555 78888652 1 1
Q ss_pred -cccee-eehhhhccCChhHHHHHHHHHHH-hCCCCCCCcEEEE-Eee
Q 023625 172 -QANAV-LLKWILHNWNDEESVKLLKKCKE-AIPSKDEGGKVII-IDM 215 (279)
Q Consensus 172 -~~D~v-~~~~vlh~~~~~~~~~~L~~~~~-~L~~~~pgG~lli-~e~ 215 (279)
...++ ++...+.+++++++..+|+++++ .|+ ||+.++| +|.
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~---~~d~lLiG~D~ 199 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS---PSDSFLIGLDG 199 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC---CCCEEEEecCC
Confidence 24444 55679999999999999999999 999 6887776 443
No 184
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.04 E-value=2.2e-05 Score=62.87 Aligned_cols=142 Identities=16% Similarity=0.263 Sum_probs=91.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-CC--CeEEeeCCCCC-CCC--ccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-ND--NLDFLGGNMFE-AIP--QANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~--ri~~~~~d~~~-~~~--~~D~v~~~~vlh~ 184 (279)
+....++|||||-|++...+..+. --+.+..|. ..+++.++.- .+ .+....+|-.. ++. ++|+++.+..+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH- 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH- 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-
Confidence 456789999999999999999886 337889998 7788877742 12 34456666544 443 599999999998
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCee------CCHHHHHHHHHHC
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKE------RSVDDWKKLFLAA 258 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~------r~~~e~~~ll~~a 258 (279)
|..+ ...-+.+|+.+|| |+|.++ ..++... ..++......+.-+-..||.. -...++-.||..|
T Consensus 149 W~Nd-LPg~m~~ck~~lK---PDg~Fi--asmlggd----TLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rA 218 (325)
T KOG2940|consen 149 WTND-LPGSMIQCKLALK---PDGLFI--ASMLGGD----TLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRA 218 (325)
T ss_pred hhcc-CchHHHHHHHhcC---CCccch--hHHhccc----cHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhc
Confidence 4432 4567888999999 688443 2222221 111222222222222223221 1346788999999
Q ss_pred CCceeEE
Q 023625 259 GFSHYKI 265 (279)
Q Consensus 259 Gf~~~~~ 265 (279)
||+...+
T Consensus 219 GF~m~tv 225 (325)
T KOG2940|consen 219 GFSMLTV 225 (325)
T ss_pred Cccccee
Confidence 9997665
No 185
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.04 E-value=2.1e-05 Score=64.56 Aligned_cols=76 Identities=17% Similarity=0.421 Sum_probs=60.4
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI 170 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~ 170 (279)
+...+++.-+ .++...||+||.|||.++..++++ ..+++.+++ |.++....+ .+.+.+++.||+++ +.
T Consensus 46 v~~~I~~ka~--~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~ 121 (315)
T KOG0820|consen 46 VIDQIVEKAD--LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL 121 (315)
T ss_pred HHHHHHhccC--CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC
Confidence 3345665554 778899999999999999999998 456888887 777765542 24789999999999 78
Q ss_pred Cccceeee
Q 023625 171 PQANAVLL 178 (279)
Q Consensus 171 ~~~D~v~~ 178 (279)
|-+|.++.
T Consensus 122 P~fd~cVs 129 (315)
T KOG0820|consen 122 PRFDGCVS 129 (315)
T ss_pred cccceeec
Confidence 88998887
No 186
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.02 E-value=1e-05 Score=67.26 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=73.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---C-CC-cccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---A-IP-QANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~-~~-~~D~v 176 (279)
+..++||=||+|.|..+.++++..+..+++++|+ +.+++.+++ ..+|++++.+|... . .. .||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 4678999999999999999998766778999999 889988874 14799999999864 2 33 69999
Q ss_pred eehhhhccCChh--HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 177 LLKWILHNWNDE--ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 177 ~~~~vlh~~~~~--~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++-..--.-+.. -....++.+++.|+ |||.+++..
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~---~~Gv~v~~~ 191 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLK---PDGVLVLQA 191 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEE---EEEEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcC---CCcEEEEEc
Confidence 873321111111 12578999999999 688776644
No 187
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.98 E-value=3.2e-05 Score=63.37 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=76.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh-cccCCCCeE-EeeCCCCC--------CCCccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN-LQGTNDNLD-FLGGNMFE--------AIPQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~~~~ri~-~~~~d~~~--------~~~~~D~v~~~~v 181 (279)
...++||+|||+|.++..++++ +..+++++|. +.++.. .++. +++. +...|+.. +...+|+.+++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~-~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~ 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQD-ERVKVLERTNIRYVTPADIFPDFATFDVSFISLI 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcC-CCeeEeecCCcccCCHhHcCCCceeeeEEEeehH
Confidence 5679999999999999999987 3457999999 546554 4443 4543 33334331 1224787777654
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEE-EEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeC-------CHHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVI-IIDMAIENQSQDKESMETQLCFDILMVSLFRGKER-------SVDDWKK 253 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r-------~~~e~~~ 253 (279)
+ +|..+.++|+ | |.++ ++.+-..-.... . .-+|-.+ -.+++..
T Consensus 153 ~----------~l~~i~~~l~---~-~~~~~L~KPqFE~~~~~---------~------~~~giv~~~~~~~~~~~~~~~ 203 (228)
T TIGR00478 153 S----------ILPELDLLLN---P-NDLTLLFKPQFEAGREK---------K------NKKGVVRDKEAIALALHKVID 203 (228)
T ss_pred h----------HHHHHHHHhC---c-CeEEEEcChHhhhcHhh---------c------CcCCeecCHHHHHHHHHHHHH
Confidence 3 4888899999 6 5443 443322211100 0 0012222 3456677
Q ss_pred HHHHCCCceeEEEecC
Q 023625 254 LFLAAGFSHYKITPML 269 (279)
Q Consensus 254 ll~~aGf~~~~~~~~~ 269 (279)
.+.+.||++..+.+.|
T Consensus 204 ~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 204 KGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHcCCCeEeeEEECC
Confidence 7788899988776543
No 188
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.97 E-value=4.3e-05 Score=69.06 Aligned_cols=91 Identities=20% Similarity=0.304 Sum_probs=63.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCCC-----C-C-ccceee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFEA-----I-P-QANAVL 177 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~~-----~-~-~~D~v~ 177 (279)
..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+.. ..+++|+.+|+.+. . . .+|+|+
T Consensus 290 ~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi 367 (431)
T TIGR00479 290 LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLL 367 (431)
T ss_pred cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEE
Confidence 3456799999999999999999874 47999999 8888887741 25899999998641 1 1 489988
Q ss_pred ehhhhccCChhH-HHHHHHHHHHhCCCCCCCcEEEE
Q 023625 178 LKWILHNWNDEE-SVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 178 ~~~vlh~~~~~~-~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+.- +... ...+++.+.+ ++ |++.+++
T Consensus 368 ~dP-----Pr~G~~~~~l~~l~~-l~---~~~ivyv 394 (431)
T TIGR00479 368 LDP-----PRKGCAAEVLRTIIE-LK---PERIVYV 394 (431)
T ss_pred ECc-----CCCCCCHHHHHHHHh-cC---CCEEEEE
Confidence 621 1111 2355555543 67 5665544
No 189
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.95 E-value=4.2e-05 Score=62.90 Aligned_cols=67 Identities=12% Similarity=0.311 Sum_probs=51.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCC----CCCCC----ccceee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNM----FEAIP----QANAVL 177 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~----~~~~~----~~D~v~ 177 (279)
....|+|+|||+|..+..++...|.++++.+|. +.++..|.+ +.+++.++..++ +.+.+ ..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 345799999999999999999999999999999 666665553 368888885544 43322 377777
Q ss_pred eh
Q 023625 178 LK 179 (279)
Q Consensus 178 ~~ 179 (279)
++
T Consensus 228 sN 229 (328)
T KOG2904|consen 228 SN 229 (328)
T ss_pred cC
Confidence 63
No 190
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=0.001 Score=51.65 Aligned_cols=67 Identities=10% Similarity=0.322 Sum_probs=51.3
Q ss_pred CCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhcc----cCCCCeEEeeCCCCCCC--Cccceeeehh
Q 023625 114 LKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQ----GTNDNLDFLGGNMFEAI--PQANAVLLKW 180 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~--~~~D~v~~~~ 180 (279)
..-++|||||+|..+..|++.. |+..+...|+ |.+++... ....+++.+..|+.+.. .+.|+++++-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 5789999999999999988865 6778999999 88877644 23456788888887732 3578777643
No 191
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.88 E-value=4.8e-05 Score=60.20 Aligned_cols=89 Identities=21% Similarity=0.366 Sum_probs=67.4
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhh---cc---cCCCCeEEeeCCCCC-CC-CccceeeehhhhccCC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDN---LQ---GTNDNLDFLGGNMFE-AI-PQANAVLLKWILHNWN 186 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~---a~---~~~~ri~~~~~d~~~-~~-~~~D~v~~~~vlh~~~ 186 (279)
+++|||.|.|.-++-++=.+|+.+++.+|. ..-+.. +. .+ ++++++.+...+ .. ..||+|+++.+-.
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~aRAv~~--- 126 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEPEYRESFDVVTARAVAP--- 126 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEEESSSS---
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecccccCCCccEEEeehhcC---
Confidence 899999999999999999999999999997 433322 22 24 579999998887 23 3699999988742
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
...+++-+.+.++ +||+++..-
T Consensus 127 ---l~~l~~~~~~~l~---~~G~~l~~K 148 (184)
T PF02527_consen 127 ---LDKLLELARPLLK---PGGRLLAYK 148 (184)
T ss_dssp ---HHHHHHHHGGGEE---EEEEEEEEE
T ss_pred ---HHHHHHHHHHhcC---CCCEEEEEc
Confidence 3477888888899 799888754
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.88 E-value=3.1e-05 Score=65.74 Aligned_cols=77 Identities=18% Similarity=0.222 Sum_probs=59.9
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcccC---CCCeEEeeCCCCC-C--C-
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQGT---NDNLDFLGGNMFE-A--I- 170 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~---~~ri~~~~~d~~~-~--~- 170 (279)
..++++.+. ..+...+||.+||.|..+..+++..| +.+++++|. +.+++.+++. .+|++++.+|+.+ . .
T Consensus 8 l~Evl~~L~--~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 8 LDEVVDALA--IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred HHHHHHhhC--CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHH
Confidence 355666664 35667999999999999999999996 789999999 9999888742 3589999999864 1 1
Q ss_pred ---Cccceeee
Q 023625 171 ---PQANAVLL 178 (279)
Q Consensus 171 ---~~~D~v~~ 178 (279)
+.+|.|++
T Consensus 86 ~~~~~vDgIl~ 96 (296)
T PRK00050 86 EGLGKVDGILL 96 (296)
T ss_pred cCCCccCEEEE
Confidence 14677665
No 193
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.87 E-value=5.3e-05 Score=60.48 Aligned_cols=97 Identities=14% Similarity=0.227 Sum_probs=62.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---C--C-c-cceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---I--P-Q-ANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~--~-~-~D~v~~ 178 (279)
...++||++||+|.++.+++.+... +++.+|. +.+++.+++ ..++++++.+|.++. . . . +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4679999999999999999998653 7999998 777766653 235789999998551 1 1 2 677666
Q ss_pred hhhhccCChhHHHHHHHHHH--HhCCCCCCCcEEEEEeeec
Q 023625 179 KWILHNWNDEESVKLLKKCK--EAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~--~~L~~~~pgG~lli~e~~~ 217 (279)
-=.... .....++..+. ..++ ++ .++|+|+..
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~---~~-~iiv~E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILE---DT-VLIVVEEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCC---CC-eEEEEEecC
Confidence 322211 11233344333 3466 34 467777543
No 194
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.84 E-value=6.5e-05 Score=66.54 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=51.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC---C-Cccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA---I-PQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~---~-~~~D~v~~~ 179 (279)
+..+|||++||+|.++..++.. ..+++++|. +.+++.|+. . .++++|..+|+.+. . ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 4579999999999999999864 468999999 888887764 1 24799999998652 1 348998873
No 195
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.79 E-value=0.00012 Score=67.42 Aligned_cols=98 Identities=15% Similarity=0.210 Sum_probs=68.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC---CCC--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE---AIP--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~---~~~--~~D~v~~~~v 181 (279)
....+||||||.|.++..+++.+|+..++++|. ...+..+.. .-.++.++.+|+.. .++ +.|-|++.+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 456899999999999999999999999999998 544443321 12577788877632 233 3677766321
Q ss_pred hccCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
= -|+.. -...+|+.+++.|+ |||.+.+..
T Consensus 427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk---~gG~i~~~T 462 (506)
T PRK01544 427 D-PWIKNKQKKKRIFNKERLKILQDKLK---DNGNLVFAS 462 (506)
T ss_pred C-CCCCCCCccccccCHHHHHHHHHhcC---CCCEEEEEc
Confidence 1 12211 12478999999999 799888754
No 196
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.70 E-value=6.6e-05 Score=62.35 Aligned_cols=137 Identities=15% Similarity=0.189 Sum_probs=80.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcc----------------------c-----------CCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQ----------------------G-----------TND 157 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~----------------------~-----------~~~ 157 (279)
++.++||||+|+-.+- ++.+.+.. ..+..|. +...+..+ . ...
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 4568999999996553 33333333 3777776 54443221 0 011
Q ss_pred CeE-EeeCCCCCC--C------Cc-cceeeehhhhccCC--hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch
Q 023625 158 NLD-FLGGNMFEA--I------PQ-ANAVLLKWILHNWN--DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE 225 (279)
Q Consensus 158 ri~-~~~~d~~~~--~------~~-~D~v~~~~vlh~~~--~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~ 225 (279)
.|. ++..|..++ . |. ||++++..+|.... .++-.+.++++.++|| |||.+++....-.... .
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk---pGG~Lil~~~l~~t~Y-~-- 207 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK---PGGHLILAGVLGSTYY-M-- 207 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE---EEEEEEEEEESS-SEE-E--
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC---CCcEEEEEEEcCceeE-E--
Confidence 233 667788762 2 33 99999998886543 4567899999999999 7999988775432100 0
Q ss_pred hhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 226 SMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 226 ~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
..... +..-..+++.+++.++++||.+.+...
T Consensus 208 --vG~~~--------F~~l~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 208 --VGGHK--------FPCLPLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp --ETTEE--------EE---B-HHHHHHHHHHTTEEEEEEEG
T ss_pred --ECCEe--------cccccCCHHHHHHHHHHcCCEEEeccc
Confidence 00000 011123889999999999999988875
No 197
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.67 E-value=1.9e-05 Score=70.43 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=65.8
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEe---eC-hhHHhhcccCCCCeEEeeCCCCC---CCC--ccceeeehhhhc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVF---DL-PHVVDNLQGTNDNLDFLGGNMFE---AIP--QANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~--~~D~v~~~~vlh 183 (279)
....+||||||+|.++..|+++. +..+.+ |. +..+..|.+. .+..+-+-+.+ |+| .||+|.+++++-
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleR--Gvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALER--GVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhc--CcchhhhhhccccccCCccchhhhhcccccc
Confidence 45679999999999999999874 222211 22 2233333221 13323222211 566 499999999999
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.|.+.+ ..+|-++-|+|+ |||.+++..+-..
T Consensus 193 ~W~~~~-g~~l~evdRvLR---pGGyfv~S~ppv~ 223 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLR---PGGYFVLSGPPVY 223 (506)
T ss_pred cchhcc-cceeehhhhhhc---cCceEEecCCccc
Confidence 998887 468999999999 7998887665443
No 198
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00034 Score=58.04 Aligned_cols=92 Identities=15% Similarity=0.307 Sum_probs=61.7
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCCc--
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIPQ-- 172 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~-- 172 (279)
.+.+++... ..+...|+|||+|.|.++..|+++... ++++++ +..++..++ ..++++++.+|+.+ ++++
T Consensus 19 ~~kIv~~a~--~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~ 94 (259)
T COG0030 19 IDKIVEAAN--ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLA 94 (259)
T ss_pred HHHHHHhcC--CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhc
Confidence 345666554 455789999999999999999999765 555555 555544443 35899999999998 6663
Q ss_pred -cceeeehhhhccCChhHHHHHHHH
Q 023625 173 -ANAVLLKWILHNWNDEESVKLLKK 196 (279)
Q Consensus 173 -~D~v~~~~vlh~~~~~~~~~~L~~ 196 (279)
.+.|+ ++.=++++.+-..++|+.
T Consensus 95 ~~~~vV-aNlPY~Isspii~kll~~ 118 (259)
T COG0030 95 QPYKVV-ANLPYNISSPILFKLLEE 118 (259)
T ss_pred CCCEEE-EcCCCcccHHHHHHHHhc
Confidence 34444 344455555544444443
No 199
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00046 Score=55.06 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC-C-------
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA-I------- 170 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~-~------- 170 (279)
..++.+.+. .+.+..+|+|+|+.+|.++..+++... +.+++++|+.++-.. ..+.++.+|+..+ .
T Consensus 33 L~el~~k~~-i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~-----~~V~~iq~d~~~~~~~~~l~~~ 106 (205)
T COG0293 33 LLELNEKFK-LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPI-----PGVIFLQGDITDEDTLEKLLEA 106 (205)
T ss_pred HHHHHHhcC-eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccC-----CCceEEeeeccCccHHHHHHHH
Confidence 345666663 578899999999999999998888764 456999998544322 4599999999873 1
Q ss_pred -Cc--cceeeehh---hhccC------ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 171 -PQ--ANAVLLKW---ILHNW------NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 171 -~~--~D~v~~~~---vlh~~------~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+. +|+|++-. +--.+ .-.-+...+.-+...|+ |||.+++-..
T Consensus 107 l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~---~~G~fv~K~f 160 (205)
T COG0293 107 LGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLK---PGGSFVAKVF 160 (205)
T ss_pred cCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC---CCCeEEEEEE
Confidence 22 58888521 11111 22244556667778899 6888776543
No 200
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.57 E-value=0.00038 Score=61.65 Aligned_cols=91 Identities=16% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC--C-CCccceeeehhhhcc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE--A-IPQANAVLLKWILHN 184 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~--~-~~~~D~v~~~~vlh~ 184 (279)
..+|||++||+|..++.++...+..++++.|+ +..++.++.. .+.+++..+|... . ...||+|++- ..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD-P~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID-PF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC-CC--
Confidence 46899999999999999998877668999999 8888877641 2456788888754 2 2359999883 22
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.....+|..+.+.++ +||.+.|.
T Consensus 135 ---Gs~~~~l~~al~~~~---~~gilyvS 157 (382)
T PRK04338 135 ---GSPAPFLDSAIRSVK---RGGLLCVT 157 (382)
T ss_pred ---CCcHHHHHHHHHHhc---CCCEEEEE
Confidence 112456777677788 68888887
No 201
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.51 E-value=0.00032 Score=56.64 Aligned_cols=90 Identities=22% Similarity=0.382 Sum_probs=66.3
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhH---Hhhccc-C-CCCeEEeeCCCCC-C-CCc-cceeeehhhhcc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHV---VDNLQG-T-NDNLDFLGGNMFE-A-IPQ-ANAVLLKWILHN 184 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~---~~~a~~-~-~~ri~~~~~d~~~-~-~~~-~D~v~~~~vlh~ 184 (279)
..+++|||.|.|.=++-++=.+|+.+++.+|. ..- ++.+.. + -++++++.+...+ . .+. ||+|.++.+--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva~- 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVAS- 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehccc-
Confidence 58999999999999999999999999999996 433 333332 2 2679999998876 2 235 99999987642
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
...++.=+...++ +||.++.
T Consensus 147 -----L~~l~e~~~pllk---~~g~~~~ 166 (215)
T COG0357 147 -----LNVLLELCLPLLK---VGGGFLA 166 (215)
T ss_pred -----hHHHHHHHHHhcc---cCCcchh
Confidence 3345666667778 5776543
No 202
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.49 E-value=8e-05 Score=63.36 Aligned_cols=100 Identities=19% Similarity=0.405 Sum_probs=65.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCe-EEEeeChhHHhhcc-c-----CCCCeEEeeCCCCC---CCCccceeeehhhh-
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIK-CTVFDLPHVVDNLQ-G-----TNDNLDFLGGNMFE---AIPQANAVLLKWIL- 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~~~~~~~a~-~-----~~~ri~~~~~d~~~---~~~~~D~v~~~~vl- 182 (279)
..+|||||.|.|.-+-++-.-+|.++ ++++.....+...- . ...+......|+.. ++|..|.|.+.-++
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~~~ 193 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIVLD 193 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhhhh
Confidence 35699999999999999999999885 67777644443221 1 11233344445443 45555555444444
Q ss_pred ---ccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 183 ---HNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 183 ---h~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
|+=++......++++...+. |||.++|+|.-
T Consensus 194 eLl~d~~ek~i~~~ie~lw~l~~---~gg~lVivErG 227 (484)
T COG5459 194 ELLPDGNEKPIQVNIERLWNLLA---PGGHLVIVERG 227 (484)
T ss_pred hhccccCcchHHHHHHHHHHhcc---CCCeEEEEeCC
Confidence 44444444458999999999 79999999963
No 203
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.48 E-value=0.00049 Score=57.94 Aligned_cols=93 Identities=15% Similarity=0.352 Sum_probs=63.7
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc---CCCCeEEeeCCCCC-CCCc-
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG---TNDNLDFLGGNMFE-AIPQ- 172 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~---~~~ri~~~~~d~~~-~~~~- 172 (279)
+++.+++.++ ..+...|+|||+|.|.++..|++.. .++++++. +..++..++ ..++++++.+|+++ +.+.
T Consensus 18 ~~~~Iv~~~~--~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 18 IADKIVDALD--LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHT--CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHhcC--CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 3455666655 4578999999999999999999987 67888888 666666554 35899999999997 4332
Q ss_pred ---cceeeehhhhccCChhHHHHHHHHHHH
Q 023625 173 ---ANAVLLKWILHNWNDEESVKLLKKCKE 199 (279)
Q Consensus 173 ---~D~v~~~~vlh~~~~~~~~~~L~~~~~ 199 (279)
-.+.+..+.=+..+. .++.++..
T Consensus 94 ~~~~~~~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEETGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEecccchH----HHHHHHhh
Confidence 233444444333333 45555555
No 204
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.47 E-value=0.00061 Score=58.48 Aligned_cols=93 Identities=19% Similarity=0.443 Sum_probs=71.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhccc------------CCCCeEEeeCCCCCCC----Ccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQG------------TNDNLDFLGGNMFEAI----PQA 173 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~~----~~~ 173 (279)
++..++|-+|||.|..++++++ || --+++.+|+ |.+++.++. ..+|++++..|.++-. ..|
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 5678999999999999999887 68 457999999 999998872 2579999999998732 248
Q ss_pred ceeeehhhhccCChhH--------HHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 174 NAVLLKWILHNWNDEE--------SVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~--------~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
|+++. +++|+. ...+-+-+++.|+ ++|.+++.
T Consensus 367 D~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~---e~Gl~VvQ 406 (508)
T COG4262 367 DVVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLA---ETGLMVVQ 406 (508)
T ss_pred cEEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcC---cCceEEEe
Confidence 98887 344432 2456667778899 68877764
No 205
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.44 E-value=0.00041 Score=54.42 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=71.5
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cCCCCeEEeeCCCCCCCCccceeeehhhhccC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GTNDNLDFLGGNMFEAIPQANAVLLKWILHNW 185 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~ 185 (279)
.-.+++|||+|.|+|..+++-++... ..++..|+ |..+..++ .+.-.|.+...|...+.+.+|+++.+.++++.
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~ 155 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNH 155 (218)
T ss_pred ccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCc
Confidence 44578999999999999998887642 35667777 44333333 23456788888877655579999999999754
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
+ .+.+++. +...++. .|-.++|-++-.+.
T Consensus 156 ~--~a~~l~~-~~~~l~~--~g~~vlvgdp~R~~ 184 (218)
T COG3897 156 T--EADRLIP-WKDRLAE--AGAAVLVGDPGRAY 184 (218)
T ss_pred h--HHHHHHH-HHHHHHh--CCCEEEEeCCCCCC
Confidence 4 4556676 6666664 46677776655544
No 206
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.42 E-value=0.00034 Score=55.40 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=60.4
Q ss_pred HHHHhchhhhC--CCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------
Q 023625 102 IVIKDCKEVFE--GLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA--------- 169 (279)
Q Consensus 102 ~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~--------- 169 (279)
++.+.++. +. +..++||+||++|.++..++++. +..+++++|+...-. ...+.++.+|+.++
T Consensus 11 ei~~~~~~-~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~-----~~~~~~i~~d~~~~~~~~~i~~~ 84 (181)
T PF01728_consen 11 EIDEKFKI-FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDP-----LQNVSFIQGDITNPENIKDIRKL 84 (181)
T ss_dssp HHHHTTSS-S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS------TTEEBTTGGGEEEEHSHHGGGS
T ss_pred HHHHHCCC-CCcccccEEEEcCCcccceeeeeeecccccceEEEEecccccc-----ccceeeeecccchhhHHHhhhhh
Confidence 44555541 22 45899999999999999999988 678999999844411 13344444444321
Q ss_pred C----Cccceeeehhhhcc---------CChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 170 I----PQANAVLLKWILHN---------WNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 170 ~----~~~D~v~~~~vlh~---------~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
. ..+|+|++-..... .+-+.+...|.-+.+.|+ |||.+++-
T Consensus 85 ~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~---~gG~~v~K 138 (181)
T PF01728_consen 85 LPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLK---PGGTFVIK 138 (181)
T ss_dssp HGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHC---TTEEEEEE
T ss_pred ccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc---CCCEEEEE
Confidence 1 24788876431111 112234455555667789 79977653
No 207
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.41 E-value=0.00025 Score=56.90 Aligned_cols=91 Identities=20% Similarity=0.339 Sum_probs=63.9
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC--CCccceeeehhh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA--IPQANAVLLKWI 181 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~--~~~~D~v~~~~v 181 (279)
..++.+|+|+-||.|.++..+++..+..+++..|+ |..++..++ ..+++....+|..+- ...+|-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 45678999999999999999999777888999999 888776553 467899999998772 235998888543
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEE
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKV 210 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~l 210 (279)
. .+..+|..+.+.++ +||.+
T Consensus 179 -----~-~~~~fl~~~~~~~~---~~g~i 198 (200)
T PF02475_consen 179 -----E-SSLEFLDAALSLLK---EGGII 198 (200)
T ss_dssp -----S-SGGGGHHHHHHHEE---EEEEE
T ss_pred -----H-HHHHHHHHHHHHhc---CCcEE
Confidence 2 24467888888888 46644
No 208
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.40 E-value=0.00044 Score=52.45 Aligned_cols=84 Identities=19% Similarity=0.344 Sum_probs=59.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHH----CCCCeEEEeeC-hhHHhhccc--------CCCCeEEeeCCCCCC--CCcccee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATA----FPDIKCTVFDL-PHVVDNLQG--------TNDNLDFLGGNMFEA--IPQANAV 176 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~--~~~~D~v 176 (279)
.+..+|+|+|||.|+++..|+.. .++++++++|. +..++.+.. ...++.+..++.... ....+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 56789999999999999999992 27899999998 766666653 135667777766542 2346777
Q ss_pred eehhhhccCChhHHHHHHHHHHH
Q 023625 177 LLKWILHNWNDEESVKLLKKCKE 199 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~ 199 (279)
+.-|.--++++ .+|+...+
T Consensus 104 vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 104 VGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEeecccchHH----HHHHHHHH
Confidence 77666655555 44555544
No 209
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.39 E-value=0.0062 Score=48.94 Aligned_cols=86 Identities=9% Similarity=0.186 Sum_probs=68.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC---ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP---QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~---~~D~v~~~~vl 182 (279)
....+.||||-++.+.+.+.+.++...++..|. +.-++.|.+ +.++++...+|-+.++. ..|+++...+
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 455699999999999999999999999999998 777776653 46899999999988643 4888877543
Q ss_pred ccCChhHHHHHHHHHHHhCC
Q 023625 183 HNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~ 202 (279)
.-.-...+|.+-.+-++
T Consensus 95 ---GG~lI~~ILee~~~~l~ 111 (226)
T COG2384 95 ---GGTLIREILEEGKEKLK 111 (226)
T ss_pred ---cHHHHHHHHHHhhhhhc
Confidence 34456778888877777
No 210
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.38 E-value=0.00015 Score=56.01 Aligned_cols=62 Identities=26% Similarity=0.512 Sum_probs=46.1
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC---CC--c-cceeee
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA---IP--Q-ANAVLL 178 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~---~~--~-~D~v~~ 178 (279)
..|+|+-||.|..++.+++.+. +++.+|+ |..++.++. ..++|+++.+|+++- .. . +|+|++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 3799999999999999999864 5899999 877877763 367999999999862 11 2 688876
No 211
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.36 E-value=0.0038 Score=51.65 Aligned_cols=120 Identities=16% Similarity=0.281 Sum_probs=80.3
Q ss_pred HHHHHhhhcchhh----HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-hhHHhhccc------
Q 023625 87 LFYDLMITDSELI----AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-PHVVDNLQG------ 154 (279)
Q Consensus 87 ~f~~~m~~~~~~~----~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------ 154 (279)
.+..+|...++.+ ...|+..++ ..++.+|++-|.|+|.++.++++.- |.-++.-+|. ..-.+.|.+
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~--i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hg 154 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE--IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHG 154 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc--CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhC
Confidence 3455555444432 223444454 6889999999999999999999986 6678888998 444444542
Q ss_pred CCCCeEEeeCCCCCC-CC----ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 155 TNDNLDFLGGNMFEA-IP----QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 155 ~~~ri~~~~~d~~~~-~~----~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.++.+++...|+... +. .+|+|++ +++.+. ..+-.++++++. .||+++-+.+++
T Consensus 155 i~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~--~g~r~csFSPCI 213 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKD--EGGRLCSFSPCI 213 (314)
T ss_pred CCcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhh--cCceEEeccHHH
Confidence 478999999998763 22 4999998 333332 335556667775 466777666554
No 212
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0014 Score=53.32 Aligned_cols=103 Identities=19% Similarity=0.315 Sum_probs=76.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC----CeEEEeeC-hhHHhhcc-----cC-CCCeEEeeCCCCCC---CCc---cc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD----IKCTVFDL-PHVVDNLQ-----GT-NDNLDFLGGNMFEA---IPQ---AN 174 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~-~~~~~~a~-----~~-~~ri~~~~~d~~~~---~~~---~D 174 (279)
.+..+++|+|.|+..-+..|+..+.. ++++-+|+ ..+++... +. .--+.-+++|+..+ .|+ -=
T Consensus 77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl 156 (321)
T COG4301 77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL 156 (321)
T ss_pred hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence 45789999999999999888888765 78999998 55554322 22 23456677888653 332 23
Q ss_pred eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE-Eeeec
Q 023625 175 AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII-IDMAI 217 (279)
Q Consensus 175 ~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli-~e~~~ 217 (279)
.+++...|-++++++|..+|.+++.+|+ ||-.+++ +|..-
T Consensus 157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~---pGd~~LlGvDl~k 197 (321)
T COG4301 157 FVFLGSTLGNLTPGECAVFLTQLRGALR---PGDYFLLGVDLRK 197 (321)
T ss_pred EEEecccccCCChHHHHHHHHHHHhcCC---CcceEEEeccccC
Confidence 4567889999999999999999999999 6877666 45443
No 213
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=97.32 E-value=0.00025 Score=62.24 Aligned_cols=52 Identities=21% Similarity=0.279 Sum_probs=43.2
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE 168 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~ 168 (279)
.+|||++||+|.++..+++... +++++|. +++++.+++. .++++|+.+|..+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 7999999 8888887741 2478999998754
No 214
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.31 E-value=0.0012 Score=55.47 Aligned_cols=96 Identities=10% Similarity=0.285 Sum_probs=58.2
Q ss_pred CCEEEEecCCccHHHHHHHH-H-CCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCC-C--CCccceeeehh
Q 023625 114 LKSLVDVAGGTGIMARAIAT-A-FPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFE-A--IPQANAVLLKW 180 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~-~-~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~--~~~~D~v~~~~ 180 (279)
.++|+=||+|.=-++.-+.. + .++..++++|+ +..++.+++ +..+++|+++|..+ + ...||+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999997766655544 3 36788999999 888887763 36799999999876 2 34799999877
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..- ...++-.++|.++.+.|+ ||.+|++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~---~ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMA---PGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS----TTSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCC---CCcEEEEe
Confidence 553 233455799999999999 68877663
No 215
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.30 E-value=0.0017 Score=50.67 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=62.9
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHhhcccCCCCeEEeeC-CCCCC---------CC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVDNLQGTNDNLDFLGG-NMFEA---------IP 171 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~~a~~~~~ri~~~~~-d~~~~---------~~ 171 (279)
+-+.|. .+.+..+|||+||.+|.++.-..++. |+-.+.++|+-+... .....++.+ |+.+| .|
T Consensus 60 indKy~-~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~p-----~~Ga~~i~~~dvtdp~~~~ki~e~lp 133 (232)
T KOG4589|consen 60 INDKYR-FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIEP-----PEGATIIQGNDVTDPETYRKIFEALP 133 (232)
T ss_pred ehhhcc-ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeeccC-----CCCcccccccccCCHHHHHHHHHhCC
Confidence 444554 36788999999999999999877776 998999999744432 133444444 55443 23
Q ss_pred --ccceeeehhh--------h-ccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 172 --QANAVLLKWI--------L-HNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 172 --~~D~v~~~~v--------l-h~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
..|+|++-.. + |...-+-|..+|.-....+. |+|.+++
T Consensus 134 ~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~---p~g~fvc 182 (232)
T KOG4589|consen 134 NRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI---PNGSFVC 182 (232)
T ss_pred CCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC---CCcEEEE
Confidence 2677765221 1 11223345556655556667 6887665
No 216
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.29 E-value=0.00072 Score=52.69 Aligned_cols=96 Identities=16% Similarity=0.265 Sum_probs=72.1
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC-CCCccceeeehhhhccCCh
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE-AIPQANAVLLKWILHNWND 187 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~ 187 (279)
..+.|+|.|+|.++.-.+++ .-+++.+.. |...+.|.+. ..+++++.+|..+ .+..+|+|++-..=-.+-+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 58899999999999866665 347888888 7777666642 4689999999988 7778999987543223345
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+..+.+++.+.+-|+ -+++++=.+.
T Consensus 112 E~qVpV~n~vleFLr---~d~tiiPq~v 136 (252)
T COG4076 112 EKQVPVINAVLEFLR---YDPTIIPQEV 136 (252)
T ss_pred ccccHHHHHHHHHhh---cCCccccHHH
Confidence 556788999999998 4777765443
No 217
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.27 E-value=0.014 Score=49.05 Aligned_cols=135 Identities=16% Similarity=0.196 Sum_probs=87.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeCh-hHH-------hh---c----------------------cc-----
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLP-HVV-------DN---L----------------------QG----- 154 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~-------~~---a----------------------~~----- 154 (279)
...+||-=|||-|.++.++++.. -.+.+-+.. .|+ .. . +.
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 45789999999999999999983 344444431 111 10 0 00
Q ss_pred --------CCCCeEEeeCCCCC--CCC----ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 155 --------TNDNLDFLGGNMFE--AIP----QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 155 --------~~~ri~~~~~d~~~--~~~----~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
...++....|||.+ +.+ .+|+|+....+. +-+.....|+.|.++|| |||..+=+.+..-..
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFID--TA~Ni~~Yi~tI~~lLk---pgG~WIN~GPLlyh~ 208 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFID--TAENIIEYIETIEHLLK---PGGYWINFGPLLYHF 208 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEee--chHHHHHHHHHHHHHhc---cCCEEEecCCccccC
Confidence 13578899999987 223 599998886664 34568899999999999 788433222221111
Q ss_pred CCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 221 SQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 221 ~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
. +.. ......-+.+.+|+.++.++.||+++.-..
T Consensus 209 ~------------~~~-~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 209 E------------PMS-IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred C------------CCC-CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 0 000 000113456999999999999999876544
No 218
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.26 E-value=0.0041 Score=48.86 Aligned_cols=140 Identities=16% Similarity=0.171 Sum_probs=84.0
Q ss_pred hhCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeChhHHh-----------hccc-CCCCeEEeeCCCCC-CCC-ccc
Q 023625 110 VFEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDLPHVVD-----------NLQG-TNDNLDFLGGNMFE-AIP-QAN 174 (279)
Q Consensus 110 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~~~~~-----------~a~~-~~~ri~~~~~d~~~-~~~-~~D 174 (279)
++++..+|+|+=.|.|.++.-|...- |.-.+..+-..+... .+++ ...+++.+..+... ..| +.|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 37889999999999999998877653 332333332111111 1111 12344444444433 222 467
Q ss_pred eeeehhhhcc-----CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHH
Q 023625 175 AVLLKWILHN-----WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVD 249 (279)
Q Consensus 175 ~v~~~~vlh~-----~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~ 249 (279)
+++....-|+ +...-+.++-+.++++|| |||.++|.|+......... .... -..++..
T Consensus 125 ~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK---PGGv~~V~dH~a~pG~~~~---dt~~-----------~~ri~~a 187 (238)
T COG4798 125 LVPTAQNYHDMHNKNIHPATAAKVNAAVFKALK---PGGVYLVEDHRADPGSGLS---DTIT-----------LHRIDPA 187 (238)
T ss_pred ccccchhhhhhhccccCcchHHHHHHHHHHhcC---CCcEEEEEeccccCCCChh---hhhh-----------hcccChH
Confidence 6665433332 235567889999999999 7999999998876543321 1110 0112567
Q ss_pred HHHHHHHHCCCceeEEE
Q 023625 250 DWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 250 e~~~ll~~aGf~~~~~~ 266 (279)
-..+..+.+||+..--.
T Consensus 188 ~V~a~veaaGFkl~aeS 204 (238)
T COG4798 188 VVIAEVEAAGFKLEAES 204 (238)
T ss_pred HHHHHHHhhcceeeeee
Confidence 78888899999876443
No 219
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.20 E-value=0.00037 Score=51.93 Aligned_cols=68 Identities=18% Similarity=0.324 Sum_probs=49.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccC----CCCeEEeeCCCCCCCC---ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQGT----NDNLDFLGGNMFEAIP---QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~----~~ri~~~~~d~~~~~~---~~D~v~~~~vl 182 (279)
.++++.|+|||.|.++.+.. +|+. .++++|+ |+.++.+... .-.+++.+.|+.++.+ -||..++.-.+
T Consensus 48 Egkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEecCCC
Confidence 47899999999999995443 4544 5899999 9999887742 3456788888877432 27777765433
No 220
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.20 E-value=0.0056 Score=52.75 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=67.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC--C-ccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI--P-QANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~--~-~~D~v~~~~vlh~~~~ 187 (279)
+.++.++||+||++|.++..++++ +.+++++|..++....... ++|++..+|.+... + .+|.+++-.+. .+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~-~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P 282 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDT-GQVEHLRADGFKFRPPRKNVDWLVCDMVE---KP 282 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCC-CCEEEEeccCcccCCCCCCCCEEEEeccc---CH
Confidence 356789999999999999999998 5699999976555544444 89999999988732 2 48998886654 34
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
.. +++-+.+.+.. .-.+-.|+..-++-
T Consensus 283 ~r---va~lm~~Wl~~--g~cr~aIfnLKlpm 309 (357)
T PRK11760 283 AR---VAELMAQWLVN--GWCREAIFNLKLPM 309 (357)
T ss_pred HH---HHHHHHHHHhc--CcccEEEEEEEcCC
Confidence 43 44444455652 11345566655544
No 221
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.16 E-value=0.0041 Score=47.18 Aligned_cols=96 Identities=20% Similarity=0.328 Sum_probs=64.1
Q ss_pred EEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhcccCC--C-C--eEEeeCCCCC---CCC---ccceeeehhhhc
Q 023625 117 LVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQGTN--D-N--LDFLGGNMFE---AIP---QANAVLLKWILH 183 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~~~--~-r--i~~~~~d~~~---~~~---~~D~v~~~~vlh 183 (279)
++|+|||+|... .+.+..+. ..++++|. +.++..++... . . +.+..+|... +.. .+|++......|
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999987 34444333 47888898 66666544221 1 1 5777777654 332 489994444444
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
... ....++++.+.++ |+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~---~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLK---PGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcC---CCcEEEEEeccCCC
Confidence 333 5688999999999 78988887765443
No 222
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=97.16 E-value=0.0003 Score=55.57 Aligned_cols=147 Identities=18% Similarity=0.230 Sum_probs=80.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC-CCCCCCCccceeeehhhhccCChhHH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG-NMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~-d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
...++||+|.|.|..+..++..+.+ +...++ ..+..+.+.. +..+... +..+..-++|+|.+.++|...-++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~kk--~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p-- 185 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLKKK--NYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP-- 185 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHhhc--CCceeeehhhhhcCceeehHHHHHHHHhhcCh--
Confidence 4579999999999999887765543 233333 3344444332 1121111 111111149999999998654443
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeC--CHHHHHHHHHHCCCceeEEEec
Q 023625 191 VKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKER--SVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r--~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
-++|+.++.+++| .+|++++. .++|-...-. .........-.-+...+|+.+ ....+.++|+++||.+....+.
T Consensus 186 ~kLL~Di~~vl~p--sngrviva-LVLP~~hYVE-~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrl 261 (288)
T KOG3987|consen 186 FKLLEDIHLVLAP--SNGRVIVA-LVLPYMHYVE-TNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRL 261 (288)
T ss_pred HHHHHHHHHHhcc--CCCcEEEE-EEecccceee-cCCCCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhhhcC
Confidence 6899999999995 47876653 3333210000 000000000000112235433 3345778999999998777665
Q ss_pred C
Q 023625 269 L 269 (279)
Q Consensus 269 ~ 269 (279)
|
T Consensus 262 P 262 (288)
T KOG3987|consen 262 P 262 (288)
T ss_pred C
Confidence 5
No 223
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.13 E-value=0.012 Score=49.74 Aligned_cols=136 Identities=15% Similarity=0.199 Sum_probs=86.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-----hh-HH------------------------------------hh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-----PH-VV------------------------------------DN 151 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----~~-~~------------------------------------~~ 151 (279)
.-+||-=|||.|.++..|+...+.+++--+.. .. ++ ..
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 45789999999999999999888777632110 00 00 00
Q ss_pred cc--cCCCCeEEeeCCCCC--CCC----ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCC
Q 023625 152 LQ--GTNDNLDFLGGNMFE--AIP----QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQD 223 (279)
Q Consensus 152 a~--~~~~ri~~~~~d~~~--~~~----~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~ 223 (279)
++ ...+..+...|||.+ +.+ .+|+|+.++.+. +-......|..|.+.|+ |||..+=+.+..-.-...
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk---~GGvWiNlGPLlYHF~d~ 305 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILK---PGGVWINLGPLLYHFEDT 305 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhcc---CCcEEEeccceeeeccCC
Confidence 00 012344557799987 222 399998876653 44567899999999999 688665444433221111
Q ss_pred chhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 224 KESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 224 ~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
. + .....+-+.+.+++.++.+.-||++.+-.
T Consensus 306 ~---------g---~~~~~siEls~edl~~v~~~~GF~~~ke~ 336 (369)
T KOG2798|consen 306 H---------G---VENEMSIELSLEDLKRVASHRGFEVEKER 336 (369)
T ss_pred C---------C---CcccccccccHHHHHHHHHhcCcEEEEee
Confidence 0 0 00112456699999999999999987654
No 224
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.09 E-value=0.00098 Score=52.60 Aligned_cols=100 Identities=21% Similarity=0.295 Sum_probs=62.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------------CCCCeEEeeCCCCCCCCc-cceeeeh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------------TNDNLDFLGGNMFEAIPQ-ANAVLLK 179 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~ri~~~~~d~~~~~~~-~D~v~~~ 179 (279)
...++|||||-|.++..|...+|+.-..++++ -.+.+-.++ .-.++.+...+.+.-.|+ |.--.++
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLs 140 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLS 140 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccc
Confidence 35799999999999999999999998999887 555543331 113455555544432232 1111122
Q ss_pred hhhccCChh-----------HHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 180 WILHNWNDE-----------ESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 180 ~vlh~~~~~-----------~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
-.++.++|+ -+..++.+..=+|+ +||.++.+..+
T Consensus 141 kmff~fpdpHfk~~khk~rii~~~l~~eyay~l~---~gg~~ytitDv 185 (249)
T KOG3115|consen 141 KMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLR---EGGILYTITDV 185 (249)
T ss_pred cceeecCChhHhhhhccceeechhHHHHHHhhhh---cCceEEEEeeH
Confidence 222223333 12457788888899 69998877654
No 225
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.08 E-value=0.0045 Score=50.08 Aligned_cols=127 Identities=14% Similarity=0.163 Sum_probs=87.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCC---CCC--ccceeee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFE---AIP--QANAVLL 178 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~---~~~--~~D~v~~ 178 (279)
+...+|||.=.|-|..+++.+++.. ..++-++. |.+++.|.- ...+|+++.||..+ .++ +||+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi- 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII- 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe-
Confidence 4678999999999999999998743 26777777 888888763 13478999999886 344 488876
Q ss_pred hhhhccCC------hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH
Q 023625 179 KWILHNWN------DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252 (279)
Q Consensus 179 ~~vlh~~~------~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~ 252 (279)
|+-| .=-...+-++++++|+ |||+++=.- ..+.. .+..+. -+....
T Consensus 211 ----HDPPRfS~AgeLYseefY~El~RiLk---rgGrlFHYv---G~Pg~--------ryrG~d----------~~~gVa 262 (287)
T COG2521 211 ----HDPPRFSLAGELYSEEFYRELYRILK---RGGRLFHYV---GNPGK--------RYRGLD----------LPKGVA 262 (287)
T ss_pred ----eCCCccchhhhHhHHHHHHHHHHHcC---cCCcEEEEe---CCCCc--------ccccCC----------hhHHHH
Confidence 3211 1124578899999999 799986322 11110 011111 245678
Q ss_pred HHHHHCCCceeEEEec
Q 023625 253 KLFLAAGFSHYKITPM 268 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~ 268 (279)
+.|+++||.+++....
T Consensus 263 ~RLr~vGF~~v~~~~~ 278 (287)
T COG2521 263 ERLRRVGFEVVKKVRE 278 (287)
T ss_pred HHHHhcCceeeeeehh
Confidence 8999999997766544
No 226
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.00047 Score=52.38 Aligned_cols=96 Identities=20% Similarity=0.250 Sum_probs=64.6
Q ss_pred CCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhccc--------CCCCeEEeeCCCCCCC----C-ccceeee
Q 023625 114 LKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQG--------TNDNLDFLGGNMFEAI----P-QANAVLL 178 (279)
Q Consensus 114 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~ri~~~~~d~~~~~----~-~~D~v~~ 178 (279)
+.+|+++|||- |..+..++..-|...+.+.|- ...++..+. ...++.++.-+....+ . .||.|+.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 47899999995 455555666668888888897 666665543 1234444444443321 2 5999999
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..++. =++....+.+-|...|+ |.|+-+++.
T Consensus 110 ADClF--fdE~h~sLvdtIk~lL~---p~g~Al~fs 140 (201)
T KOG3201|consen 110 ADCLF--FDEHHESLVDTIKSLLR---PSGRALLFS 140 (201)
T ss_pred ccchh--HHHHHHHHHHHHHHHhC---cccceeEec
Confidence 99884 45666788899999999 677755543
No 227
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.01 E-value=0.0043 Score=49.08 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=62.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCe---------EEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC-C-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIK---------CTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI-P- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~- 171 (279)
+.+...|+|-=||+|.+.++.+...++.. +++.|+ +.+++.++. ....+.+...|+.+ +. .
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~~~~ 105 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPLPDG 105 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGGTTS
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcccccC
Confidence 45678999999999999999888777766 999999 888887764 34678999999987 53 2
Q ss_pred ccceeeehhhhcc-CCh-----hHHHHHHHHHHHhCC
Q 023625 172 QANAVLLKWILHN-WND-----EESVKLLKKCKEAIP 202 (279)
Q Consensus 172 ~~D~v~~~~vlh~-~~~-----~~~~~~L~~~~~~L~ 202 (279)
.+|+|+..-..-. ... +--.++++++.++++
T Consensus 106 ~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~ 142 (179)
T PF01170_consen 106 SVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK 142 (179)
T ss_dssp BSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST
T ss_pred CCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC
Confidence 4898887433221 121 122456788888888
No 228
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.0072 Score=48.85 Aligned_cols=101 Identities=14% Similarity=0.235 Sum_probs=74.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCC---------Ccc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAI---------PQA 173 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~---------~~~ 173 (279)
.-+.++.+|||.=+|.-+.+++.+.|. -+++.+|. +...+.+.+ ....|+++.++..+.+ +.|
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 346789999999999999999999985 57999998 555555442 4689999999887531 249
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
|.+|+- +|-+ .....+.++.+.++ +||.|++-...++.
T Consensus 151 DfaFvD----adK~-nY~~y~e~~l~Llr---~GGvi~~DNvl~~G 188 (237)
T KOG1663|consen 151 DFAFVD----ADKD-NYSNYYERLLRLLR---VGGVIVVDNVLWPG 188 (237)
T ss_pred eEEEEc----cchH-HHHHHHHHHHhhcc---cccEEEEeccccCC
Confidence 998873 2344 34588999999999 67766554444444
No 229
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.95 E-value=0.019 Score=48.20 Aligned_cols=146 Identities=12% Similarity=0.071 Sum_probs=93.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCCCC------Cc-----
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFEAI------PQ----- 172 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~~~------~~----- 172 (279)
.+...||.+|||-=.-...+... +++++.-+|.|++++.-++ ...+..++..|+...+ .+
T Consensus 80 ~g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ 158 (260)
T TIGR00027 80 AGIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTA 158 (260)
T ss_pred cCCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCC
Confidence 34568999999998888776422 3578888899998875332 2468899999987321 12
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh-hcC---CeeCCH
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS-LFR---GKERSV 248 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~---~~~r~~ 248 (279)
.-++++-.++..++++++.++|+.+.+... ||+.| +.|.+.+-.... .......... ... ..+ -...+.
T Consensus 159 ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~---~gs~l-~~d~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (260)
T TIGR00027 159 PTAWLWEGLLMYLTEEAVDALLAFIAELSA---PGSRL-AFDYVRPLDGEW-RAGMRAPVYH--AARGVDGSGLVFGIDR 231 (260)
T ss_pred CeeeeecchhhcCCHHHHHHHHHHHHHhCC---CCcEE-EEEeccccchhH-HHHHHHHHHH--hhhcccccccccCCCh
Confidence 336777889999999999999999999887 46654 456554411111 0000000000 000 000 111367
Q ss_pred HHHHHHHHHCCCceeEE
Q 023625 249 DDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~ 265 (279)
++..++|++.||+..+.
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 89999999999998765
No 230
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.93 E-value=0.00095 Score=58.89 Aligned_cols=52 Identities=21% Similarity=0.259 Sum_probs=42.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE 168 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~ 168 (279)
.+|||++||+|.++..+++... +++++|. +.+++.+++. .++++|+.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998753 7999999 8888877641 2478999998754
No 231
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.87 E-value=0.014 Score=53.06 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=71.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCC---CCC-ccceeee-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFE---AIP-QANAVLL- 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~---~~~-~~D~v~~- 178 (279)
..++.+|||+.+|+|.=+..+++...+ -.++..|+ +.-+...++ . ..++.+...|... ..+ .||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 356789999999999999999998754 47889998 555554442 1 2567777777654 233 4898885
Q ss_pred ---h--hh-------hccCChhHH-------HHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 ---K--WI-------LHNWNDEES-------VKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ---~--~v-------lh~~~~~~~-------~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+ .+ ...|+.++. .+||.++.+.|+ |||+|+....
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk---pGG~LVYSTC 243 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK---PGGTLVYSTC 243 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC---CCcEEEEECC
Confidence 2 12 223444333 689999999999 7998866553
No 232
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.84 E-value=0.0033 Score=51.63 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=63.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCCCCC--ccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFEAIP--QANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~~~~--~~D~v~~~~vlh~ 184 (279)
+...+|+|||||-=-++.-.....|+.++++.|+ ...++.... +..+.++...|.....| .+|+.++.-++|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~ 183 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPC 183 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHH
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHH
Confidence 4478999999999999998888888999999999 777766553 45678888889998544 5999999999987
Q ss_pred CChhHHHHHHHHHHHhCC
Q 023625 185 WNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~ 202 (279)
+..++. ..-.++.+.++
T Consensus 184 le~q~~-g~g~~ll~~~~ 200 (251)
T PF07091_consen 184 LERQRR-GAGLELLDALR 200 (251)
T ss_dssp HHHHST-THHHHHHHHSC
T ss_pred HHHHhc-chHHHHHHHhC
Confidence 766543 33344555565
No 233
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.82 E-value=0.0018 Score=49.00 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=43.0
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeCCCCC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGGNMFE 168 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~d~~~ 168 (279)
+++|||||.|.++..+++.+|..+++++|. |...+.+++. ..++++....+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999999 8887766531 1457777776654
No 234
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.71 E-value=0.0087 Score=50.78 Aligned_cols=100 Identities=24% Similarity=0.451 Sum_probs=71.9
Q ss_pred CCEEEEecCCccHHHHHHHHHC--------------------CCCeEEEeeC---hhHHhhccc----------------
Q 023625 114 LKSLVDVAGGTGIMARAIATAF--------------------PDIKCTVFDL---PHVVDNLQG---------------- 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~---~~~~~~a~~---------------- 154 (279)
..+||.||||.|.=..+|+..+ +.+.++.+|+ ..++.....
T Consensus 87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~ 166 (315)
T PF11312_consen 87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN 166 (315)
T ss_pred CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence 4699999999998777777665 2367889997 344433210
Q ss_pred ------CCCCeEEeeCCCCC-CC---------CccceeeehhhhccC---ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 155 ------TNDNLDFLGGNMFE-AI---------PQANAVLLKWILHNW---NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 155 ------~~~ri~~~~~d~~~-~~---------~~~D~v~~~~vlh~~---~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..-.++|...|+++ .. +..++|.+.+.++.+ +-.+..++|.++...++ ||..++|+|.
T Consensus 167 ~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~---~GslLLVvDS 243 (315)
T PF11312_consen 167 WPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICP---PGSLLLVVDS 243 (315)
T ss_pred cccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC---CCcEEEEEcC
Confidence 01257899999987 22 136888777666543 45577899999999999 7999999985
Q ss_pred e
Q 023625 216 A 216 (279)
Q Consensus 216 ~ 216 (279)
-
T Consensus 244 p 244 (315)
T PF11312_consen 244 P 244 (315)
T ss_pred C
Confidence 3
No 235
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=96.62 E-value=0.064 Score=43.43 Aligned_cols=133 Identities=10% Similarity=0.107 Sum_probs=84.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhH----HhhcccCCCCeEEeeCCCCCCC------Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHV----VDNLQGTNDNLDFLGGNMFEAI------PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~----~~~a~~~~~ri~~~~~d~~~~~------~~~D~v~~ 178 (279)
+.++.+||-+|.++|....++...-. +-.+.+++. |.. +..|++. .+|--+-.|...|. +..|+|+.
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R-~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR-PNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS-TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC-CceeeeeccCCChHHhhcccccccEEEe
Confidence 67889999999999999999998754 667778877 533 3445554 77888888887752 35888876
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
- +- .++++.-++.|+..-|| +||.++++=-...-+...+|. . ...+=.+-|++.
T Consensus 150 D-Va---Qp~Qa~I~~~Na~~fLk---~gG~~~i~iKa~siD~t~~p~---~----------------vf~~e~~~L~~~ 203 (229)
T PF01269_consen 150 D-VA---QPDQARIAALNARHFLK---PGGHLIISIKARSIDSTADPE---E----------------VFAEEVKKLKEE 203 (229)
T ss_dssp E--S---STTHHHHHHHHHHHHEE---EEEEEEEEEEHHHH-SSSSHH---H----------------HHHHHHHHHHCT
T ss_pred c-CC---ChHHHHHHHHHHHhhcc---CCcEEEEEEecCcccCcCCHH---H----------------HHHHHHHHHHHc
Confidence 3 32 24567778888989999 699888754322211111110 0 112224556888
Q ss_pred CCceeEEEecCC
Q 023625 259 GFSHYKITPMLG 270 (279)
Q Consensus 259 Gf~~~~~~~~~~ 270 (279)
||+..+...+.+
T Consensus 204 ~~~~~e~i~LeP 215 (229)
T PF01269_consen 204 GFKPLEQITLEP 215 (229)
T ss_dssp TCEEEEEEE-TT
T ss_pred CCChheEeccCC
Confidence 999999988754
No 236
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.57 E-value=0.0021 Score=56.27 Aligned_cols=104 Identities=15% Similarity=0.139 Sum_probs=79.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CCC--ccceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AIP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~~ 180 (279)
..+...++|+|||.|.....+.. +..+.++++|. +.-+.++.. ...+..++.+|+.. |.+ .+|.+.+..
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CcccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 34556899999999999987766 46678999998 444444332 34566678889988 565 499999988
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
+..+.++. ..++++++++++ |||...+.+.+....
T Consensus 187 ~~~~~~~~--~~~y~Ei~rv~k---pGG~~i~~e~i~~~~ 221 (364)
T KOG1269|consen 187 VVCHAPDL--EKVYAEIYRVLK---PGGLFIVKEWIKTAK 221 (364)
T ss_pred ecccCCcH--HHHHHHHhcccC---CCceEEeHHHHHhhh
Confidence 88777775 578999999999 799888888765543
No 237
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=96.57 E-value=0.038 Score=44.34 Aligned_cols=119 Identities=15% Similarity=0.180 Sum_probs=83.4
Q ss_pred HHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc----CCCCeEEeeCC
Q 023625 90 DLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----TNDNLDFLGGN 165 (279)
Q Consensus 90 ~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~~~ri~~~~~d 165 (279)
..|..+....++...+++ ...+.+||.||=|-|.....+.++.|..+.++---|.+..+.+. ..++|....|-
T Consensus 81 ~VMm~WEtpiMha~A~ai---~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~ 157 (271)
T KOG1709|consen 81 GVMMRWETPIMHALAEAI---STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGR 157 (271)
T ss_pred hhhhhhhhHHHHHHHHHH---hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecc
Confidence 445555555556555554 46789999999999999999999888877766655889888774 24677777774
Q ss_pred CCC---CCC--ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 166 MFE---AIP--QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 166 ~~~---~~~--~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
..+ .++ .||-|+.--.-- .-++...+-+.+.+.|| |+|.+-.+...
T Consensus 158 WeDvl~~L~d~~FDGI~yDTy~e--~yEdl~~~hqh~~rLLk---P~gv~SyfNg~ 208 (271)
T KOG1709|consen 158 WEDVLNTLPDKHFDGIYYDTYSE--LYEDLRHFHQHVVRLLK---PEGVFSYFNGL 208 (271)
T ss_pred hHhhhccccccCcceeEeechhh--HHHHHHHHHHHHhhhcC---CCceEEEecCc
Confidence 433 334 488887633211 12456778889999999 79987776644
No 238
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.56 E-value=0.0011 Score=47.47 Aligned_cols=91 Identities=18% Similarity=0.309 Sum_probs=39.7
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeeC-h---hHHhhccc--CCCCeEEeeCCCCCC---C--Cccceeeehhhhc
Q 023625 118 VDVAGGTGIMARAIATAFPDI---KCTVFDL-P---HVVDNLQG--TNDNLDFLGGNMFEA---I--PQANAVLLKWILH 183 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~-~---~~~~~a~~--~~~ri~~~~~d~~~~---~--~~~D~v~~~~vlh 183 (279)
||||+..|..+..+++..+.. +++.+|. + ...+..++ ..++++++.++..+- . ..+|++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999998877654 6899998 5 23333332 357899999998652 2 2589888743 23
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+.+..-++.+.+.|+ |||.|++-|
T Consensus 80 --~~~~~~~dl~~~~~~l~---~ggviv~dD 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLA---PGGVIVFDD 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEE---EEEEEEEE-
T ss_pred --CHHHHHHHHHHHHHHcC---CCeEEEEeC
Confidence 33567788999999999 688776654
No 239
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.55 E-value=0.21 Score=39.83 Aligned_cols=141 Identities=11% Similarity=0.134 Sum_probs=92.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHH----hhcccCCCCeEEeeCCCCCCC------Cccceeeeh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVV----DNLQGTNDNLDFLGGNMFEAI------PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~----~~a~~~~~ri~~~~~d~~~~~------~~~D~v~~~ 179 (279)
+.++.+||=+|..+|....++....++-.+.++.. |.+. ..+++. .++--+-+|...|. +..|+|+.
T Consensus 74 i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R-~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~- 151 (231)
T COG1889 74 IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR-PNIIPILEDARKPEKYRHLVEKVDVIYQ- 151 (231)
T ss_pred cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC-CCceeeecccCCcHHhhhhcccccEEEE-
Confidence 67899999999999999999999888656666665 4433 344443 67777888887763 35788875
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCC
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAG 259 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aG 259 (279)
.+- .++++.-+..|+..-|+ +||.++++=-...-+...+|. .. -.+| .+-|++.|
T Consensus 152 DVA---Qp~Qa~I~~~Na~~FLk---~~G~~~i~iKArSIdvT~dp~---~v---------------f~~e-v~kL~~~~ 206 (231)
T COG1889 152 DVA---QPNQAEILADNAEFFLK---KGGYVVIAIKARSIDVTADPE---EV---------------FKDE-VEKLEEGG 206 (231)
T ss_pred ecC---CchHHHHHHHHHHHhcc---cCCeEEEEEEeecccccCCHH---HH---------------HHHH-HHHHHhcC
Confidence 222 34566677788888888 688766654433333222110 00 1123 34568889
Q ss_pred CceeEEEecCCc---eeEEEEe
Q 023625 260 FSHYKITPMLGV---RSLIEAY 278 (279)
Q Consensus 260 f~~~~~~~~~~~---~~~i~~~ 278 (279)
|++.++.++.+. +.+|.++
T Consensus 207 f~i~e~~~LePye~DH~~i~~~ 228 (231)
T COG1889 207 FEILEVVDLEPYEKDHALIVAK 228 (231)
T ss_pred ceeeEEeccCCcccceEEEEEe
Confidence 999999887543 5666554
No 240
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.53 E-value=0.024 Score=48.56 Aligned_cols=147 Identities=13% Similarity=0.145 Sum_probs=92.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeChhHHhhccc--------CCCCeEEeeCCCCC-CCC------ccc--
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDLPHVVDNLQG--------TNDNLDFLGGNMFE-AIP------QAN-- 174 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~~~~~~~a~~--------~~~ri~~~~~d~~~-~~~------~~D-- 174 (279)
+...||-+|||-=.-+..+- +| ++++.-+|+|++++.=++ ...+..+++.|+.+ +++ +||
T Consensus 92 g~~qvViLgaGLDTRayRl~--~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~ 169 (297)
T COG3315 92 GIRQVVILGAGLDTRAYRLD--WPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRS 169 (297)
T ss_pred cccEEEEeccccccceeecC--CCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcC
Confidence 46899999998766554433 34 478888899999975432 23489999999995 443 233
Q ss_pred ---eeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCch--hhhhhhhcchhhh-hhcCCeeCCH
Q 023625 175 ---AVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKE--SMETQLCFDILMV-SLFRGKERSV 248 (279)
Q Consensus 175 ---~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~--~~~~~~~~d~~~~-~~~~~~~r~~ 248 (279)
++++-.++..+++++..++|++|..... ||..++.... .+....... ............. ....-.....
T Consensus 170 ~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~---~gS~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 245 (297)
T COG3315 170 RPTLWIAEGLLMYLPEEAVDRLLSRIAALSA---PGSRVAFDYS-LPGSLRDRLRRPAARKTMRGEDLDRGELVYFGDDP 245 (297)
T ss_pred CCeEEEeccccccCCHHHHHHHHHHHHHhCC---CCceEEEecc-ccHHHHhcccchhhhhhccccccccccceeccCCH
Confidence 6778889999999999999999999998 5666555432 111110000 0000000000000 0000112357
Q ss_pred HHHHHHHHHCCCceeEE
Q 023625 249 DDWKKLFLAAGFSHYKI 265 (279)
Q Consensus 249 ~e~~~ll~~aGf~~~~~ 265 (279)
.++..++.+.||.....
T Consensus 246 ~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 246 AEIETWLAERGWRSTLN 262 (297)
T ss_pred HHHHHHHHhcCEEEEec
Confidence 89999999999987766
No 241
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=96.53 E-value=0.022 Score=54.75 Aligned_cols=104 Identities=13% Similarity=0.136 Sum_probs=67.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHC------------------------------------------CCCeEEEeeC-hhH
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAF------------------------------------------PDIKCTVFDL-PHV 148 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------------p~~~~~~~D~-~~~ 148 (279)
.+...++|-.||+|.++++.+... ...+++++|+ +.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 456899999999999999887631 1236899999 888
Q ss_pred Hhhccc------CCCCeEEeeCCCCC-CCC----ccceeeehhhhc-cCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 149 VDNLQG------TNDNLDFLGGNMFE-AIP----QANAVLLKWILH-NWN-DEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 149 ~~~a~~------~~~ri~~~~~d~~~-~~~----~~D~v~~~~vlh-~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
++.|+. ..+++++..+|+.+ +.+ .+|+|++.=..- .+. +++...+.+.+.+.++..-+|++++++..
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 988874 35679999999976 322 389988753221 122 23334444444444432115888777653
No 242
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=96.31 E-value=0.017 Score=49.91 Aligned_cols=101 Identities=20% Similarity=0.311 Sum_probs=64.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHH-------CCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCC-C-CC--
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATA-------FPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFE-A-IP-- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~-~-~~-- 171 (279)
.....+|+|-.||+|.++.++.+. .+..++.++|+ +.++..++. . .....+..+|.+. + ..
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 345678999999999999998874 47788999999 776665541 1 2334588888876 2 22
Q ss_pred -ccceeeehhhh--ccCChh-----------------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 -QANAVLLKWIL--HNWNDE-----------------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 -~~D~v~~~~vl--h~~~~~-----------------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.||+|++.=.+ ..|.+. .-...+.++.+.|+ +||++.++-
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk---~~G~~~~Il 183 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK---PGGRAAIIL 183 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc---cccceeEEe
Confidence 59999874222 211111 11347888899999 699876644
No 243
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.21 E-value=0.023 Score=52.80 Aligned_cols=67 Identities=10% Similarity=0.153 Sum_probs=46.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCC--------CeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC--------C
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPD--------IKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA--------I 170 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~--------~ 170 (279)
...+|+|.+||+|.++.++++..+. ..++++|+ +..+..++. . ...+.+...|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 4569999999999999999987752 56789999 777776653 1 12345565654431 1
Q ss_pred Cccceeeeh
Q 023625 171 PQANAVLLK 179 (279)
Q Consensus 171 ~~~D~v~~~ 179 (279)
+.||+|+..
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 358998873
No 244
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.12 E-value=0.027 Score=49.80 Aligned_cols=91 Identities=13% Similarity=0.223 Sum_probs=67.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHHhhccc----C-CCCeEEeeCCCCCC--C--Cccceeeehhhhc
Q 023625 115 KSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVVDNLQG----T-NDNLDFLGGNMFEA--I--PQANAVLLKWILH 183 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~~~a~~----~-~~ri~~~~~d~~~~--~--~~~D~v~~~~vlh 183 (279)
-+|||+-||+|..++.++.+.++ -+++..|+ +..++.+++ . ..++++..+|...- . ..||+|.+ ....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl-DPfG 124 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI-DPFG 124 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe-CCCC
Confidence 58999999999999999998654 46999999 888877664 1 24578888888752 1 35999987 3332
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+ ...+|..+.+.++ +||.|.+.-
T Consensus 125 --s---~~~fld~al~~~~---~~glL~vTa 147 (374)
T TIGR00308 125 --T---PAPFVDSAIQASA---ERGLLLVTA 147 (374)
T ss_pred --C---cHHHHHHHHHhcc---cCCEEEEEe
Confidence 1 1357888888888 688888873
No 245
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.01 E-value=0.022 Score=45.63 Aligned_cols=99 Identities=16% Similarity=0.221 Sum_probs=53.7
Q ss_pred CCEEEEecCCccH---HHHHHHHHC-CCCeEEEeeC-hhHH-hhccc---CCCCeEEeeCCCCCC-----C------Ccc
Q 023625 114 LKSLVDVAGGTGI---MARAIATAF-PDIKCTVFDL-PHVV-DNLQG---TNDNLDFLGGNMFEA-----I------PQA 173 (279)
Q Consensus 114 ~~~vlDvG~G~G~---~~~~l~~~~-p~~~~~~~D~-~~~~-~~a~~---~~~ri~~~~~d~~~~-----~------~~~ 173 (279)
...|+++|--.|. +...+++.. ++.+++++|+ .... ..+.+ ..+||+++.||-.++ . +..
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 5799999965554 444556666 7889999998 2222 22222 358999999998753 1 112
Q ss_pred ceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 174 NAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 174 D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.+|+. ..=|. .+.+.+.|+.....++ +|+.++|-|....
T Consensus 113 vlVil-Ds~H~--~~hvl~eL~~y~plv~---~G~Y~IVeDt~~~ 151 (206)
T PF04989_consen 113 VLVIL-DSSHT--HEHVLAELEAYAPLVS---PGSYLIVEDTIIE 151 (206)
T ss_dssp EEEEE-SS------SSHHHHHHHHHHT-----TT-EEEETSHHHH
T ss_pred eEEEE-CCCcc--HHHHHHHHHHhCccCC---CCCEEEEEecccc
Confidence 34433 33332 2447788999999999 7888888776544
No 246
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.00 E-value=0.021 Score=50.53 Aligned_cols=96 Identities=16% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCCCC------C-ccceee
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFEAI------P-QANAVL 177 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~~~------~-~~D~v~ 177 (279)
+++|||+=|=||.++.+.+.. ++ ++|.+|+ ..+++-|++ ...++.|+.+|.++-+ . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 789999999999999988875 45 8999999 888888874 2468999999998732 2 599999
Q ss_pred ehh------hhccCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 LKW------ILHNWN-DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 ~~~------vlh~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+-= -=..|+ ..+-..++..+.+.|+ |||.++++.
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~---pgG~l~~~s 336 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLA---PGGTLVTSS 336 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcC---CCCEEEEEe
Confidence 811 000011 2345688999999999 799888765
No 247
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=95.84 E-value=0.039 Score=47.24 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE 168 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~ 168 (279)
..++++.+. ..++..+||.=+|.|..+.+++++.|+.+++++|. +.+++.+++ ..+|++++.++|.+
T Consensus 9 l~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 345666664 45677999999999999999999988899999999 888888764 24588888888754
No 248
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.71 E-value=0.047 Score=46.36 Aligned_cols=99 Identities=16% Similarity=0.265 Sum_probs=68.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------C-CCCeEEeeCCCCCC------CCccceee
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------T-NDNLDFLGGNMFEA------IPQANAVL 177 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~ri~~~~~d~~~~------~~~~D~v~ 177 (279)
..+++|||+=|=||.++.+.+.. .-.+++.+|. ..+++.+++ . .++++|+..|.++- ...||+|+
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II 200 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII 200 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence 45789999999999999976654 2347999999 888887774 2 36899999999862 13599998
Q ss_pred eh---hhhccCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 178 LK---WILHNWN-DEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 178 ~~---~vlh~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+- ..=..+. ..+-.++++.+.+.++ |||.|+.+.
T Consensus 201 lDPPsF~k~~~~~~~~y~~L~~~a~~ll~---~gG~l~~~s 238 (286)
T PF10672_consen 201 LDPPSFAKSKFDLERDYKKLLRRAMKLLK---PGGLLLTCS 238 (286)
T ss_dssp E--SSEESSTCEHHHHHHHHHHHHHHTEE---EEEEEEEEE
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHHHHhcC---CCCEEEEEc
Confidence 71 0000011 2345678999999999 789876544
No 249
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=95.64 E-value=0.052 Score=46.49 Aligned_cols=66 Identities=21% Similarity=0.252 Sum_probs=49.6
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMF 167 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~ 167 (279)
..++++.+. ..+...+||.=-|.|..+.++++++|+++++++|. |.+++.+++ ..+|+.++.++|.
T Consensus 9 l~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 355666665 56778999999999999999999999999999999 899987774 2578999988875
No 250
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.58 E-value=0.053 Score=47.08 Aligned_cols=98 Identities=18% Similarity=0.281 Sum_probs=76.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC--CC-Cccceeeehhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE--AI-PQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~--~~-~~~D~v~~~~v 181 (279)
..+.+|+|+=+|.|.+++.++++..- +++..|+ |..++..++ ..++++.+.||..+ +. +.||-|+|...
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 45889999999999999999987543 3999999 888876653 35679999999987 33 46999999764
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
- .+.+.+..+.+.++ +||.+...+.+-.+
T Consensus 266 ~------~a~~fl~~A~~~~k---~~g~iHyy~~~~e~ 294 (341)
T COG2520 266 K------SAHEFLPLALELLK---DGGIIHYYEFVPED 294 (341)
T ss_pred C------cchhhHHHHHHHhh---cCcEEEEEeccchh
Confidence 3 24567778888888 68888888776544
No 251
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=95.54 E-value=0.021 Score=45.28 Aligned_cols=99 Identities=13% Similarity=0.161 Sum_probs=64.3
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCC-------CCccceeee
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEA-------IPQANAVLL 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~-------~~~~D~v~~ 178 (279)
.+.++||+=||+|.++.+.+.+.- .+++.+|. +..+...++ ..+++.++..|.+.. ...||+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 478999999999999999988753 37999998 777766553 235789999996541 125999998
Q ss_pred hhhhccCChhHHHHHHHHHH--HhCCCCCCCcEEEEEeeecC
Q 023625 179 KWILHNWNDEESVKLLKKCK--EAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~--~~L~~~~pgG~lli~e~~~~ 218 (279)
-=.. ..... ..++|..+. ..|+ + +.++|+|+...
T Consensus 121 DPPY-~~~~~-~~~~l~~l~~~~~l~---~-~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPY-AKGLY-YEELLELLAENNLLN---E-DGLIIIEHSKK 156 (183)
T ss_dssp --ST-TSCHH-HHHHHHHHHHTTSEE---E-EEEEEEEEETT
T ss_pred CCCc-ccchH-HHHHHHHHHHCCCCC---C-CEEEEEEecCC
Confidence 4322 22221 245666665 6677 3 45777787655
No 252
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=95.51 E-value=0.09 Score=43.52 Aligned_cols=98 Identities=18% Similarity=0.195 Sum_probs=60.8
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc-----------CCCCeEEeeCCCCCC------CCc-cce
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG-----------TNDNLDFLGGNMFEA------IPQ-ANA 175 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~d~~~~------~~~-~D~ 175 (279)
..+||++|+|+|..++..+. .....++..|.+..++.-+. .+..+.+...+-..+ .+. +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 56899999999966655554 45778999998777654331 233455544444332 234 899
Q ss_pred eeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 176 VLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 176 v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
|+.+.+++.- +...-+++-++..|. .++.+++.-...
T Consensus 166 ilasDvvy~~--~~~e~Lv~tla~ll~---~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEE--ESFEGLVKTLAFLLA---KDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecC--CcchhHHHHHHHHHh---cCCeEEEEEecc
Confidence 9999988643 223345555556676 467555544433
No 253
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=95.49 E-value=0.32 Score=40.00 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=56.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----cCCCCeEEeeCCCCCCCC-----ccceeeehhhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----GTNDNLDFLGGNMFEAIP-----QANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~~~~ri~~~~~d~~~~~~-----~~D~v~~~~vl 182 (279)
.+++||-|| -.-..+++++...+..+++++|+ +..++..+ +.+-.|+.+..|+..++| .||+++.-=.
T Consensus 44 ~gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPP- 121 (243)
T PF01861_consen 44 EGKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPP- 121 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE----
T ss_pred cCCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCC-
Confidence 468999998 55566777777777789999999 66666544 333459999999998765 4999987321
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 183 HNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++.+-..-+|.+...+|+. +|+..++
T Consensus 122 --yT~~G~~LFlsRgi~~Lk~--~g~~gy~ 147 (243)
T PF01861_consen 122 --YTPEGLKLFLSRGIEALKG--EGCAGYF 147 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-S--TT-EEEE
T ss_pred --CCHHHHHHHHHHHHHHhCC--CCceEEE
Confidence 3556778899999999995 6655443
No 254
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.35 E-value=0.064 Score=48.37 Aligned_cols=84 Identities=20% Similarity=0.312 Sum_probs=60.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCC--C-C---Cccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFE--A-I---PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~--~-~---~~~D~v~~ 178 (279)
..+..+++|+=||.|.++..|+++ ..+++++++ ++.++.|+. ..++++|+.+|..+ + . ..+|+|+.
T Consensus 291 ~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vvv 368 (432)
T COG2265 291 LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVV 368 (432)
T ss_pred hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccCCCCEEEE
Confidence 456789999999999999999965 467999999 888888774 23569999999876 2 2 14788887
Q ss_pred hhhhccCChhHHH-HHHHHHHHhC
Q 023625 179 KWILHNWNDEESV-KLLKKCKEAI 201 (279)
Q Consensus 179 ~~vlh~~~~~~~~-~~L~~~~~~L 201 (279)
+-|..-+. .+++.+.+.-
T Consensus 369 -----DPPR~G~~~~~lk~l~~~~ 387 (432)
T COG2265 369 -----DPPRAGADREVLKQLAKLK 387 (432)
T ss_pred -----CCCCCCCCHHHHHHHHhcC
Confidence 33333333 5566555543
No 255
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.29 E-value=0.12 Score=44.76 Aligned_cols=93 Identities=17% Similarity=0.190 Sum_probs=64.9
Q ss_pred hCCCCEEEEecC-CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC---CCCCCC-ccceeeehhhhcc
Q 023625 111 FEGLKSLVDVAG-GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN---MFEAIP-QANAVLLKWILHN 184 (279)
Q Consensus 111 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d---~~~~~~-~~D~v~~~~vlh~ 184 (279)
..+..+|+=+|. |-|+.+..++++.- ++++++|. ++-.+.|+++ ..-.++... ..++.. .+|+++..-. .
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l-GAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~- 239 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL-GADHVINSSDSDALEAVKEIADAIIDTVG-P- 239 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh-CCcEEEEcCCchhhHHhHhhCcEEEECCC-h-
Confidence 566788887774 67889999999776 99999999 7778888887 333334332 222223 2898887543 1
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
..+....++|+ +||+++++-...
T Consensus 240 -------~~~~~~l~~l~---~~G~~v~vG~~~ 262 (339)
T COG1064 240 -------ATLEPSLKALR---RGGTLVLVGLPG 262 (339)
T ss_pred -------hhHHHHHHHHh---cCCEEEEECCCC
Confidence 23556667788 799999988663
No 256
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.53 Score=40.06 Aligned_cols=143 Identities=17% Similarity=0.297 Sum_probs=98.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeChhHHhh-cc---c-----------------------CCCCeEE
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDLPHVVDN-LQ---G-----------------------TNDNLDF 161 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~-a~---~-----------------------~~~ri~~ 161 (279)
..+...|+.+|||.-.+...|...+ +.++++-+|.|.+++. .. . ...+...
T Consensus 85 ~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~ 164 (335)
T KOG2918|consen 85 TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTDLHSGRYHL 164 (335)
T ss_pred cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcceeccCceee
Confidence 4567899999999999999999988 7788999999777653 21 0 0233444
Q ss_pred eeCCCCC--CC-----C-----c-cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhh
Q 023625 162 LGGNMFE--AI-----P-----Q-ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESME 228 (279)
Q Consensus 162 ~~~d~~~--~~-----~-----~-~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~ 228 (279)
...|+.+ .+ + + .-++++--+|-.++++++..+++-+.+... .+.+++.|.+.+.+.-+
T Consensus 165 ~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~----~a~fv~YEQi~~~D~Fg----- 235 (335)
T KOG2918|consen 165 IGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFE----NAHFVNYEQINPNDRFG----- 235 (335)
T ss_pred eccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCC----cccEEEEeccCCCChHH-----
Confidence 4444442 00 0 1 234555667778899999999999999887 68899999888554221
Q ss_pred hhhhcchhhhhhc-------CC--eeCCHHHHHHHHHHCCCceeEEEec
Q 023625 229 TQLCFDILMVSLF-------RG--KERSVDDWKKLFLAAGFSHYKITPM 268 (279)
Q Consensus 229 ~~~~~d~~~~~~~-------~~--~~r~~~e~~~ll~~aGf~~~~~~~~ 268 (279)
-.|.... .| ..-|.+..++-+.++||+.+.+.++
T Consensus 236 ------~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 236 ------KVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ------HHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhhH
Confidence 1122211 11 2237788889999999998877665
No 257
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.20 E-value=0.018 Score=40.80 Aligned_cols=31 Identities=16% Similarity=0.308 Sum_probs=25.6
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
+....+|+|||+|.+.--|.+. +.++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4668999999999999888775 567888883
No 258
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=95.11 E-value=0.35 Score=42.89 Aligned_cols=103 Identities=17% Similarity=0.270 Sum_probs=63.0
Q ss_pred CCCEEEEecCCccHHHHHHHH--------H-------CCCCeEEEeeChhH--------Hhhccc-----------CCCC
Q 023625 113 GLKSLVDVAGGTGIMARAIAT--------A-------FPDIKCTVFDLPHV--------VDNLQG-----------TNDN 158 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~--------~-------~p~~~~~~~D~~~~--------~~~a~~-----------~~~r 158 (279)
+.-+|+|+|||+|.++..+.. + -|..++..-|+|.. +..-++ ...+
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 356899999999977654422 2 25678888887521 110000 0112
Q ss_pred ---eEEeeCCCCCC-CC--ccceeeehhhhccCCh--h----------------------------------HHHHHHHH
Q 023625 159 ---LDFLGGNMFEA-IP--QANAVLLKWILHNWND--E----------------------------------ESVKLLKK 196 (279)
Q Consensus 159 ---i~~~~~d~~~~-~~--~~D~v~~~~vlh~~~~--~----------------------------------~~~~~L~~ 196 (279)
+.-++|+|++. +| .-++++++..||-++. + |...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 24466788874 45 4899999999986552 0 12334444
Q ss_pred HHHhCCCCCCCcEEEEEeeecC
Q 023625 197 CKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 197 ~~~~L~~~~pgG~lli~e~~~~ 218 (279)
=++=|. |||++++.-.-.+
T Consensus 223 Ra~ELv---pGG~mvl~~~Gr~ 241 (386)
T PLN02668 223 RAQEMK---RGGAMFLVCLGRT 241 (386)
T ss_pred HHHHhc---cCcEEEEEEecCC
Confidence 456677 7999998766554
No 259
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=94.90 E-value=0.36 Score=41.86 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=71.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----CCCeEEeeC-CCCC-CCCc--cceeeehh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----NDNLDFLGG-NMFE-AIPQ--ANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----~~ri~~~~~-d~~~-~~~~--~D~v~~~~ 180 (279)
..++..|+|==||||.++++..-. ++++++.|+ ..+++-|+.+ .....+... |... |+++ +|.|..--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 456789999999999999987765 789999999 8888888742 134444444 7766 6664 88886511
Q ss_pred ------hhccCC-hhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ------ILHNWN-DEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 ------vlh~~~-~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
....-. ++-..++|..+.++|+ +||++++.-+
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk---~gG~~vf~~p 311 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLK---PGGRIVFAAP 311 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhh---cCcEEEEecC
Confidence 111111 3456788999999999 6998887543
No 260
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=94.78 E-value=0.14 Score=40.50 Aligned_cols=87 Identities=16% Similarity=0.279 Sum_probs=60.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc----C----CCCeEEeeCCCCCC-C----------Cc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG----T----NDNLDFLGGNMFEA-I----------PQ 172 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~----~----~~ri~~~~~d~~~~-~----------~~ 172 (279)
++...||.+|||-=.....+....++++++-+|+|++++.-++ . ..+.++++.|+.++ + ++
T Consensus 77 ~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 77 PGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 3445999999999999999999888899999999998875442 1 12356799999862 1 11
Q ss_pred -cceeeehhhhccCChhHHHHHHHHHH
Q 023625 173 -ANAVLLKWILHNWNDEESVKLLKKCK 198 (279)
Q Consensus 173 -~D~v~~~~vlh~~~~~~~~~~L~~~~ 198 (279)
.-++++-.++..++++++..+|+.++
T Consensus 157 ~ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 157 RPTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp SEEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CCeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 34677778899999999998888763
No 261
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=94.70 E-value=0.083 Score=47.75 Aligned_cols=94 Identities=22% Similarity=0.322 Sum_probs=63.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hh----HHhhcccCCCCeEEeeCCCCCCC---C-ccceeeehhhh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PH----VVDNLQGTNDNLDFLGGNMFEAI---P-QANAVLLKWIL 182 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~----~~~~a~~~~~ri~~~~~d~~~~~---~-~~D~v~~~~vl 182 (279)
...+.|+|..+|.|.++.+|.+. | +.+... |. .+...-. -..--+-+|..+++ | .||++...+++
T Consensus 364 ~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd--RGLIG~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 364 GRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD--RGLIGVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred cceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh--cccchhccchhhccCCCCcchhheehhhhh
Confidence 45678999999999999999764 3 444443 22 2222111 11222344555543 4 49999999888
Q ss_pred ccCChh-HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWNDE-ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~~-~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-.+.+. +...+|-++-|.|+ |+|.++|-|
T Consensus 438 s~~~~rC~~~~illEmDRILR---P~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILR---PGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcC---CCceEEEec
Confidence 766543 55688999999999 799998855
No 262
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.59 E-value=0.043 Score=44.15 Aligned_cols=54 Identities=20% Similarity=0.333 Sum_probs=45.0
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE 168 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~ 168 (279)
....|+|.-||-|..++.++.++|. ++.+|+ |.-+..|+. ..+||+|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999999775 778888 766777663 36799999999986
No 263
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.08 E-value=0.21 Score=43.91 Aligned_cols=69 Identities=17% Similarity=0.274 Sum_probs=55.1
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCC---------------------------------------eEEEeeC-hhHHh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDI---------------------------------------KCTVFDL-PHVVD 150 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~---------------------------------------~~~~~D~-~~~~~ 150 (279)
+.+...++|==||+|.++++.+...+++ .+++.|+ +.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 4556799999999999999998877532 2679999 89998
Q ss_pred hccc------CCCCeEEeeCCCCC-CCC--ccceeeeh
Q 023625 151 NLQG------TNDNLDFLGGNMFE-AIP--QANAVLLK 179 (279)
Q Consensus 151 ~a~~------~~~ri~~~~~d~~~-~~~--~~D~v~~~ 179 (279)
.|+. +.+.|+|..+|+.. +.+ .+|+|++.
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 8773 46889999999876 333 68888884
No 264
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.86 E-value=1 Score=32.38 Aligned_cols=80 Identities=11% Similarity=0.066 Sum_probs=57.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC----CccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI----PQANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~----~~~D~v~~~~vlh~~~~ 187 (279)
...++|++||-|-=......++++ ++.++..|+.+- .++ ..+.+..-|+++|- .++|+|++.. ++
T Consensus 12 ~~~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~--~a~---~g~~~v~DDitnP~~~iY~~A~lIYSiR-----pp 80 (129)
T COG1255 12 NARGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEK--TAP---EGLRFVVDDITNPNISIYEGADLIYSIR-----PP 80 (129)
T ss_pred hcCCcEEEEccchHHHHHHHHHHc-CCcEEEEecccc--cCc---ccceEEEccCCCccHHHhhCccceeecC-----CC
Confidence 345699999988766555444443 378999998333 332 57899999999973 3699999854 56
Q ss_pred hHHHHHHHHHHHhCC
Q 023625 188 EESVKLLKKCKEAIP 202 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~ 202 (279)
++....+-+++++++
T Consensus 81 pEl~~~ildva~aVg 95 (129)
T COG1255 81 PELQSAILDVAKAVG 95 (129)
T ss_pred HHHHHHHHHHHHhhC
Confidence 667777778888876
No 265
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.65 E-value=0.3 Score=41.41 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=54.9
Q ss_pred HHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCe-EEEeeC-hhHHhhccc----CCCCeEEeeCCCC
Q 023625 100 AGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIK-CTVFDL-PHVVDNLQG----TNDNLDFLGGNMF 167 (279)
Q Consensus 100 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~ 167 (279)
.+++++.+. ..+....+|.==|.|..+.++++++|... ++++|. |.+++.|++ ..+|+.++.++|.
T Consensus 12 l~E~i~~L~--~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~ 83 (314)
T COG0275 12 LNEVVELLA--PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFA 83 (314)
T ss_pred HHHHHHhcc--cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHH
Confidence 355666665 46678999999999999999999999765 999999 999999885 2579999988775
No 266
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=93.36 E-value=0.77 Score=36.32 Aligned_cols=100 Identities=15% Similarity=0.180 Sum_probs=63.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----C--CCCeEEeeCCCCCC---C---Cccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----T--NDNLDFLGGNMFEA---I---PQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~--~~ri~~~~~d~~~~---~---~~~D~v~~~ 179 (279)
.+.++||+=+|+|.++.+-+.+.- .+++.+|. ..+....++ + ..+.++...|...- . +.||+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 478999999999999999998854 36888887 666555443 2 37888888887631 1 139999985
Q ss_pred hhhc-cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 180 WILH-NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 180 ~vlh-~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
=..+ .+.+.+...++-.-...|+ |+| ++++|.-.
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~---~~~-~iv~E~~~ 156 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLK---PGA-LIVVEHDK 156 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcC---CCc-EEEEEeCC
Confidence 4444 1122121222222345688 566 45555443
No 267
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.30 E-value=0.32 Score=35.74 Aligned_cols=87 Identities=11% Similarity=0.111 Sum_probs=46.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCC----ccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIP----QANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~----~~D~v~~~~vlh~~~~ 187 (279)
.+..+|++||-|.=.-....++.. +..+++.|..+. .+. ..+.++.-|+++|-. ++|+|++.+ ++
T Consensus 12 ~~~~kiVEVGiG~~~~vA~~L~~~-G~dV~~tDi~~~--~a~---~g~~~v~DDif~P~l~iY~~a~lIYSiR-----PP 80 (127)
T PF03686_consen 12 NNYGKIVEVGIGFNPEVAKKLKER-GFDVIATDINPR--KAP---EGVNFVVDDIFNPNLEIYEGADLIYSIR-----PP 80 (127)
T ss_dssp S-SSEEEEET-TT--HHHHHHHHH-S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEEES-------
T ss_pred CCCCcEEEECcCCCHHHHHHHHHc-CCcEEEEECccc--ccc---cCcceeeecccCCCHHHhcCCcEEEEeC-----CC
Confidence 345699999977766554444443 388999998332 222 678999999999742 689999866 44
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.+...-+.++++... .-++|.-
T Consensus 81 ~El~~~il~lA~~v~-----adlii~p 102 (127)
T PF03686_consen 81 PELQPPILELAKKVG-----ADLIIRP 102 (127)
T ss_dssp TTSHHHHHHHHHHHT------EEEEE-
T ss_pred hHHhHHHHHHHHHhC-----CCEEEEC
Confidence 455556666766654 5555543
No 268
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=0.062 Score=40.78 Aligned_cols=40 Identities=25% Similarity=0.456 Sum_probs=36.8
Q ss_pred ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 172 QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.|+|+..|++.++.-++-...++.+++.|| |||+|-|.-
T Consensus 47 s~d~iyaeHvlEHlt~~Eg~~alkechr~Lr---p~G~LriAv 86 (185)
T COG4627 47 SVDAIYAEHVLEHLTYDEGTSALKECHRFLR---PGGKLRIAV 86 (185)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHhC---cCcEEEEEc
Confidence 5999999999999999999999999999999 799887754
No 269
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=92.91 E-value=0.032 Score=39.80 Aligned_cols=85 Identities=16% Similarity=0.291 Sum_probs=42.7
Q ss_pred cceeeehhhh---c-cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhh--hhcchhhhhhcCCeeC
Q 023625 173 ANAVLLKWIL---H-NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQ--LCFDILMVSLFRGKER 246 (279)
Q Consensus 173 ~D~v~~~~vl---h-~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~--~~~d~~~~~~~~~~~r 246 (279)
||+|++..|- | +|.|+....+++++++.|+ |||.++ +|+- |+..+. .-..-.+......-..
T Consensus 2 yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~---pGG~li-lEpQ--------~w~sY~~~~~~~~~~~~n~~~i~l 69 (110)
T PF06859_consen 2 YDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR---PGGILI-LEPQ--------PWKSYKKAKRLSEEIRENYKSIKL 69 (110)
T ss_dssp EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE---EEEEEE-EE-----------HHHHHTTTTS-HHHHHHHHH---
T ss_pred ccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC---CCCEEE-EeCC--------CcHHHHHHhhhhHHHHhHHhceEE
Confidence 7888875542 2 4789999999999999999 677555 4431 110000 0000001111112223
Q ss_pred CHHHHHHHHHH--CCCceeEEEecC
Q 023625 247 SVDDWKKLFLA--AGFSHYKITPML 269 (279)
Q Consensus 247 ~~~e~~~ll~~--aGf~~~~~~~~~ 269 (279)
.++++.+.|.+ .||...+....+
T Consensus 70 rP~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 70 RPDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp -GGGHHHHHTSTTT---EEEEE---
T ss_pred ChHHHHHHHHhcccceEEEEEcccC
Confidence 56678888877 599988765553
No 270
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.89 E-value=0.45 Score=41.82 Aligned_cols=110 Identities=15% Similarity=0.285 Sum_probs=72.3
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEe---eChhHHhhcc------------cCCCCeEEeeCCCC
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVF---DLPHVVDNLQ------------GTNDNLDFLGGNMF 167 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~~~~~~~a~------------~~~~ri~~~~~d~~ 167 (279)
+++.+. ..+....+|+|+|.|.....++.....-.-+++ |.|.-+...+ .....++.+.++|.
T Consensus 184 i~dEl~--~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~ 261 (419)
T KOG3924|consen 184 IVDELK--LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFL 261 (419)
T ss_pred HHHHhc--cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccC
Confidence 344443 567889999999999998877765433333444 4333332222 11356889999998
Q ss_pred CC------CCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 168 EA------IPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 168 ~~------~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
.+ .+.+++|++.++.. +++...+ ++++..-++ +|-+++-.+...+.+
T Consensus 262 ~~~~v~eI~~eatvi~vNN~~F--dp~L~lr-~~eil~~ck---~gtrIiS~~~L~~r~ 314 (419)
T KOG3924|consen 262 DPKRVTEIQTEATVIFVNNVAF--DPELKLR-SKEILQKCK---DGTRIISSKPLVPRP 314 (419)
T ss_pred CHHHHHHHhhcceEEEEecccC--CHHHHHh-hHHHHhhCC---CcceEeccccccccc
Confidence 74 23599999999873 5554333 347777777 688888888877743
No 271
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=92.88 E-value=0.92 Score=41.04 Aligned_cols=97 Identities=18% Similarity=0.240 Sum_probs=69.4
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----CCCCeEEeeCCCCC-CCC--ccceeeehhhhccC-C
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNW-N 186 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~-~ 186 (279)
+++-+|||.-.++..+-+.. .-.++..|. +.+++.... ..+-+.+...|+.. .++ .||+++....++.+ .
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 99999999998887776643 235788888 444443332 12557788888877 454 69999999888775 3
Q ss_pred hhH-------HHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 187 DEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 187 ~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
|++ +-..+.+++++++ |||+.+.+...
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~---~~gk~~svtl~ 163 (482)
T KOG2352|consen 130 DEDALLNTAHVSNMLDEVSRVLA---PGGKYISVTLV 163 (482)
T ss_pred CchhhhhhHHhhHHHhhHHHHhc---cCCEEEEEEee
Confidence 332 2346889999999 79998887764
No 272
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.81 E-value=0.45 Score=35.94 Aligned_cols=96 Identities=18% Similarity=0.287 Sum_probs=60.5
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc------cCCCCeEEeeCCCCC-CCCccceeeeh---h
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ------GTNDNLDFLGGNMFE-AIPQANAVLLK---W 180 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~ri~~~~~d~~~-~~~~~D~v~~~---~ 180 (279)
.+..+.+|+|.|.|....+.++.. -...+++++ |-.+..++ ..+.+..|..-|+++ +...|.-+++. .
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~dy~~vviFgaes 149 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRDYRNVVIFGAES 149 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccceEEEeehHH
Confidence 456799999999999988877764 345788888 55554443 235688899999988 66554333322 2
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
++.+ +-.+++.-|+ .+.+++-.-.-+|.
T Consensus 150 ~m~d--------Le~KL~~E~p---~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 150 VMPD--------LEDKLRTELP---ANTRVVACRFPLPT 177 (199)
T ss_pred HHhh--------hHHHHHhhCc---CCCeEEEEecCCCc
Confidence 3322 2233444566 46677665554443
No 273
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.77 E-value=1.3 Score=36.32 Aligned_cols=139 Identities=11% Similarity=0.126 Sum_probs=78.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeC-CCCC--C--CC-ccceeeehhhhc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGG-NMFE--A--IP-QANAVLLKWILH 183 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~-d~~~--~--~~-~~D~v~~~~vlh 183 (279)
..+..+||||..||.++--++++.- .++.++|. .+..-..+.. +|+..... |+.. + +. ..|++++--.+
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gA-k~VyavDVG~~Ql~~kLR~d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~DvSF- 154 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGA-KHVYAVDVGYGQLHWKLRND-PRVIVLERTNVRYLTPEDFTEKPDLIVIDVSF- 154 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCC-cEEEEEEccCCccCHhHhcC-CcEEEEecCChhhCCHHHcccCCCeEEEEeeh-
Confidence 4678999999999999999988743 36888896 2233333333 66665544 3332 1 11 25666552211
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEE-EEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVI-IIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~ll-i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
--...+|..+...++ |++-++ ++-+........-. ......|- .....-..++.+++++.||++
T Consensus 155 ----ISL~~iLp~l~~l~~---~~~~~v~LvKPQFEagr~~v~--kkGvv~d~------~~~~~v~~~i~~~~~~~g~~~ 219 (245)
T COG1189 155 ----ISLKLILPALLLLLK---DGGDLVLLVKPQFEAGREQVG--KKGVVRDP------KLHAEVLSKIENFAKELGFQV 219 (245)
T ss_pred ----hhHHHHHHHHHHhcC---CCceEEEEecchhhhhhhhcC--cCceecCc------chHHHHHHHHHHHHhhcCcEE
Confidence 223578888888898 566444 34333322111100 00000000 011224567888999999999
Q ss_pred eEEEec
Q 023625 263 YKITPM 268 (279)
Q Consensus 263 ~~~~~~ 268 (279)
..+...
T Consensus 220 ~gl~~S 225 (245)
T COG1189 220 KGLIKS 225 (245)
T ss_pred eeeEcc
Confidence 888654
No 274
>PRK10742 putative methyltransferase; Provisional
Probab=92.43 E-value=0.85 Score=37.81 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=70.4
Q ss_pred HHHHhchhhhCCCC--EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc----c----------CCCCeEEeeC
Q 023625 102 IVIKDCKEVFEGLK--SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ----G----------TNDNLDFLGG 164 (279)
Q Consensus 102 ~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~----~----------~~~ri~~~~~ 164 (279)
.++++.. ++++. +|||.=+|+|..+..++.. +++++.++. |.+....+ . ...|++++.+
T Consensus 77 ~l~kAvg--lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~ 152 (250)
T PRK10742 77 AVAKAVG--IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_pred HHHHHhC--CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeC
Confidence 4555554 45555 9999999999999999987 778999998 44333222 0 1257889999
Q ss_pred CCCC---CCC-ccceeeeh----------------hhhccC--ChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 165 NMFE---AIP-QANAVLLK----------------WILHNW--NDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 165 d~~~---~~~-~~D~v~~~----------------~vlh~~--~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
|..+ ..+ .||+|++- .++|.+ .+.+...+|..+.++-+ -+++|=.+...
T Consensus 153 da~~~L~~~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~~~l~g~d~d~~~lL~~Al~~A~-----kRVVVKrp~~a 223 (250)
T PRK10742 153 SSLTALTDITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLAT-----KRVVVKRPDYA 223 (250)
T ss_pred cHHHHHhhCCCCCcEEEECCCCCCCccccchhhhHHHHHHhcCCCCChHHHHHHHHHhcC-----ceEEEecCCCC
Confidence 8765 222 48998861 223222 24455677777777655 57777665443
No 275
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=92.36 E-value=0.21 Score=43.91 Aligned_cols=49 Identities=20% Similarity=0.403 Sum_probs=37.3
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNM 166 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~ 166 (279)
+|||+=||.|.++..+++.. -++++++. +.+++.|+. .-++++|..++.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 89999999999999999875 46999999 888888773 236889987754
No 276
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=92.32 E-value=1.1 Score=40.90 Aligned_cols=126 Identities=15% Similarity=0.292 Sum_probs=81.4
Q ss_pred ChhhhhhcCchHHHHHHHHhhhcchhhHHHHHHhchhh-hCCCCEEEEecCCccHHHHHHHHHC----CCCeEEEeeC-h
Q 023625 73 KVWDRVADEPKFKSLFYDLMITDSELIAGIVIKDCKEV-FEGLKSLVDVAGGTGIMARAIATAF----PDIKCTVFDL-P 146 (279)
Q Consensus 73 ~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-~ 146 (279)
..|+.+++||-.-..|++|+.. .+.+..+.+ .+....|+-+|+|.|-+..+.+++- ..++.++++- |
T Consensus 333 ~TYetFEkD~VKY~~Yq~Ai~~-------AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNP 405 (649)
T KOG0822|consen 333 QTYETFEKDPVKYDQYQQAILK-------ALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNP 405 (649)
T ss_pred hhhhhhhccchHHHHHHHHHHH-------HHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCc
Confidence 4577788888777777765432 233333321 1224568889999999888776643 4567788887 7
Q ss_pred hHHhhccc-----CCCCeEEeeCCCCC-CCC--ccceeeehhhhccCChhH-HHHHHHHHHHhCCCCCCCcE
Q 023625 147 HVVDNLQG-----TNDNLDFLGGNMFE-AIP--QANAVLLKWILHNWNDEE-SVKLLKKCKEAIPSKDEGGK 209 (279)
Q Consensus 147 ~~~~~a~~-----~~~ri~~~~~d~~~-~~~--~~D~v~~~~vlh~~~~~~-~~~~L~~~~~~L~~~~pgG~ 209 (279)
.++...+. -..||+++..|+.+ ..| ++|++++ ..|--+.|.+ ..+-|.-+-+.|+ |+|.
T Consensus 406 NAivtL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLk---pdgI 473 (649)
T KOG0822|consen 406 NAIVTLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLK---PDGI 473 (649)
T ss_pred chhhhhhhhchhhhcCeeEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcC---CCce
Confidence 66654432 25899999999987 433 5898775 3444455532 2345777777889 5753
No 277
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=92.19 E-value=0.37 Score=42.08 Aligned_cols=106 Identities=15% Similarity=0.238 Sum_probs=59.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC----------------CCCeEEEeeChhHH--hhccc---------CCCC--eEE
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF----------------PDIKCTVFDLPHVV--DNLQG---------TNDN--LDF 161 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~----------------p~~~~~~~D~~~~~--~~a~~---------~~~r--i~~ 161 (279)
.+..-+|+|+||.+|..+..+...- |..+++.-|+|..= ...+. .... +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 3455689999999999988766531 34577777875211 10110 0122 345
Q ss_pred eeCCCCCC-CC--ccceeeehhhhccCCh-------------------------------------hHHHHHHHHHHHhC
Q 023625 162 LGGNMFEA-IP--QANAVLLKWILHNWND-------------------------------------EESVKLLKKCKEAI 201 (279)
Q Consensus 162 ~~~d~~~~-~~--~~D~v~~~~vlh~~~~-------------------------------------~~~~~~L~~~~~~L 201 (279)
++|.|+.. +| ..|+++++..||-++. .|...+|+.=++=|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 67899884 45 4899999888885541 12234444444567
Q ss_pred CCCCCCcEEEEEeeecCC
Q 023625 202 PSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 202 ~~~~pgG~lli~e~~~~~ 219 (279)
+ |||++++.-...++
T Consensus 174 v---~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 V---PGGRMVLTFLGRDE 188 (334)
T ss_dssp E---EEEEEEEEEEE-ST
T ss_pred c---cCcEEEEEEeeccc
Confidence 7 79999988777766
No 278
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=90.71 E-value=4.4 Score=35.78 Aligned_cols=105 Identities=14% Similarity=0.255 Sum_probs=70.3
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCC--CeEEEeeC-hhHHhhcc----cC-CCCeEEeeCCCCC-C--CC---cccee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPD--IKCTVFDL-PHVVDNLQ----GT-NDNLDFLGGNMFE-A--IP---QANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-~~~~~~a~----~~-~~ri~~~~~d~~~-~--~~---~~D~v 176 (279)
..++.+|||+-.+.|.=+..+++..++ ..++.+|. +.-+...+ .. ..++..+..|... + .+ .||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 456799999999999999999998875 56789998 54444433 22 2346666666542 1 22 27888
Q ss_pred ee------hhhh-------ccCChhH-------HHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 177 LL------KWIL-------HNWNDEE-------SVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 177 ~~------~~vl-------h~~~~~~-------~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
++ ..++ ..++.++ -.++|+++.+.+| |||.|+.....+.
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk---~GG~LVYSTCS~~ 292 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK---PGGVLVYSTCSLT 292 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEccCCc
Confidence 76 2233 2333331 2578999999999 7998887665443
No 279
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=90.56 E-value=1.1 Score=38.29 Aligned_cols=73 Identities=12% Similarity=0.191 Sum_probs=41.5
Q ss_pred CCEEEEecCCccHH-HHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeC----CCCCCC--C--cccee
Q 023625 114 LKSLVDVAGGTGIM-ARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGG----NMFEAI--P--QANAV 176 (279)
Q Consensus 114 ~~~vlDvG~G~G~~-~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~----d~~~~~--~--~~D~v 176 (279)
..++||||+|..-. ...-++. .+.++++.|+ +..++.|++ +.++|+++.. +++... + .||+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~-~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKL-YGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHH-H--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhh-cCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 56899999998754 4444444 4899999999 888888873 4678988654 344422 1 48988
Q ss_pred eehhhhccCCh
Q 023625 177 LLKWILHNWND 187 (279)
Q Consensus 177 ~~~~vlh~~~~ 187 (279)
++.=.+|.=.+
T Consensus 182 mCNPPFy~s~~ 192 (299)
T PF05971_consen 182 MCNPPFYSSQE 192 (299)
T ss_dssp EE-----SS--
T ss_pred ecCCccccChh
Confidence 88777775433
No 280
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=90.48 E-value=0.86 Score=38.59 Aligned_cols=99 Identities=13% Similarity=0.181 Sum_probs=67.0
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCC-eEEEeeC-hhHHhhccc---------CCCCeEEeeCCCCC---CC--Cccce
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQG---------TNDNLDFLGGNMFE---AI--PQANA 175 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~---------~~~ri~~~~~d~~~---~~--~~~D~ 175 (279)
...++++-||+|.|.+.+...++ +.. ....+|+ ..+++..++ ...++..+.||-+. .. ..+|+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 46789999999999999999987 554 4677787 566665543 25799999998764 23 35999
Q ss_pred eeehhhhccCChh---HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 176 VLLKWILHNWNDE---ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 176 v~~~~vlh~~~~~---~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
|+.-..= -..+. --..+...+.++|| |||.+++...
T Consensus 199 ii~dssd-pvgpa~~lf~~~~~~~v~~aLk---~dgv~~~q~e 237 (337)
T KOG1562|consen 199 IITDSSD-PVGPACALFQKPYFGLVLDALK---GDGVVCTQGE 237 (337)
T ss_pred EEEecCC-ccchHHHHHHHHHHHHHHHhhC---CCcEEEEecc
Confidence 9873210 00111 11245566778999 6888777653
No 281
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=90.47 E-value=0.7 Score=41.26 Aligned_cols=89 Identities=17% Similarity=0.245 Sum_probs=58.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC-CC-C--ccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE-AI-P--QANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~-~~-~--~~D~v~~~~v 181 (279)
+...|||||.|||.++...+++..+ .++.++. .++.+.|+. ..++|+++.---.+ .+ | .+|+++-..+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~f 144 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDF 144 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhh
Confidence 4567999999999999988888644 5888888 888888874 25677776543322 22 2 2676655444
Q ss_pred hccCChhHHHHHHHHHHHhCC
Q 023625 182 LHNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~ 202 (279)
.-.+--+.+..-++++.+.|-
T Consensus 145 dtEligeGalps~qhAh~~L~ 165 (636)
T KOG1501|consen 145 DTELIGEGALPSLQHAHDMLL 165 (636)
T ss_pred hhhhhccccchhHHHHHHHhc
Confidence 333333445556777776664
No 282
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=90.39 E-value=0.35 Score=43.88 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=43.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMF 167 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~ 167 (279)
++..+.++||=||||..+.++++. -.+++++.+ |+.++-|+. ...+.+|++|-..
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE 441 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAE 441 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecchh
Confidence 567789999999999999999886 456888888 888877763 2368899999443
No 283
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=90.15 E-value=8.1 Score=34.37 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=62.7
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHH----HC---CCCeEEEeeChh-----HHhh--------cccCCCCeE
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIAT----AF---PDIKCTVFDLPH-----VVDN--------LQGTNDNLD 160 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~----~~---p~~~~~~~D~~~-----~~~~--------a~~~~~ri~ 160 (279)
+.|++++. -...-+|+|+|.|.|.-=..|.+ +. |.+++|+++.|. .++. |+...-..+
T Consensus 100 qaIleA~~--g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 100 QAILEAFE--GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred HHHHHHhc--cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 45777765 34567899999999974444444 32 778999999732 2222 222233455
Q ss_pred EeeC--CCCCCC--------C-ccceeeehhhhccCChh------HHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 161 FLGG--NMFEAI--------P-QANAVLLKWILHNWNDE------ESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 161 ~~~~--d~~~~~--------~-~~D~v~~~~vlh~~~~~------~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
|... +-.+.. + .+=+|-+..-||++.++ ....+|+.++ .|+| . .++++|.-.+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P---~-vvv~~E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP---K-VVVLVEQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC---C-EEEEEeecCCC
Confidence 5552 222211 1 13344455667887633 2345676665 6774 4 56666655443
No 284
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=89.93 E-value=0.91 Score=40.34 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=53.6
Q ss_pred cccCCCCeEEeeCCCCC---CC--CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 152 LQGTNDNLDFLGGNMFE---AI--PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 152 a~~~~~ri~~~~~d~~~---~~--~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
.++..+|++++.+++.+ .. ..+|.+++...+--+++++..++++.+.++++ |||+|+.-....+.
T Consensus 270 lr~~~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~---pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 270 LRARLDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR---PGARVLWRSAAVPP 339 (380)
T ss_pred HhcCCCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC---CCCEEEEeeCCCCC
Confidence 34445999999999876 23 25999999999988899999999999999999 79999987765543
No 285
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.37 E-value=4.3 Score=36.10 Aligned_cols=99 Identities=17% Similarity=0.237 Sum_probs=62.4
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEee---CC-CCCC---C---Cccceeee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLG---GN-MFEA---I---PQANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~---~d-~~~~---~---~~~D~v~~ 178 (279)
..+..+|+.+|+|. |..+..++++....++++.|. ++..+.+++.. ...++. .+ +.+. . .++|+++-
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~-~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld 260 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL-GAETINFEEVDDVVEALRELTGGRGPDVCID 260 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CcEEEcCCcchHHHHHHHHHcCCCCCCEEEE
Confidence 45567899999988 999999999986546888887 77777766531 122221 11 1111 1 14777765
Q ss_pred hh---------------hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 179 KW---------------ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ~~---------------vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.- +|+..++. ...++.+.+.++ |+|+++++..
T Consensus 261 ~vg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~---~~G~iv~~g~ 307 (386)
T cd08283 261 AVGMEAHGSPLHKAEQALLKLETDR--PDALREAIQAVR---KGGTVSIIGV 307 (386)
T ss_pred CCCCcccccccccccccccccccCc--hHHHHHHHHHhc---cCCEEEEEcC
Confidence 31 12222222 356788889999 7999988754
No 286
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=89.07 E-value=6.7 Score=30.51 Aligned_cols=122 Identities=14% Similarity=0.171 Sum_probs=72.3
Q ss_pred EecCCccHHHHHHHHHCC---CCeEEEeeC-hhHHhhcc-------cC-CCCeEEe-eCCCCC---CC--C--ccceeee
Q 023625 119 DVAGGTGIMARAIATAFP---DIKCTVFDL-PHVVDNLQ-------GT-NDNLDFL-GGNMFE---AI--P--QANAVLL 178 (279)
Q Consensus 119 DvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~-------~~-~~ri~~~-~~d~~~---~~--~--~~D~v~~ 178 (279)
=||=|.=.++.+|++++. ++.++.+|. .+..+.-. .+ ...+.+. ..|..+ .. . .||.|++
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 367788889999999987 445677776 33333322 11 1233332 224433 12 1 4999998
Q ss_pred hhhhcc-----------CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCC
Q 023625 179 KWILHN-----------WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERS 247 (279)
Q Consensus 179 ~~vlh~-----------~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~ 247 (279)
.+.--. .+.+-...+++.+.+.|+ ++|.|.|.=.--. .++
T Consensus 82 NFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~---~~G~IhVTl~~~~--------------------------py~ 132 (166)
T PF10354_consen 82 NFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLK---PDGEIHVTLKDGQ--------------------------PYD 132 (166)
T ss_pred eCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC---CCCEEEEEeCCCC--------------------------CCc
Confidence 664332 112344578889999999 6898877321110 011
Q ss_pred HHHHHHHHHHCCCceeEEEecC
Q 023625 248 VDDWKKLFLAAGFSHYKITPML 269 (279)
Q Consensus 248 ~~e~~~ll~~aGf~~~~~~~~~ 269 (279)
.=.+.++.+++||...+..+..
T Consensus 133 ~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 133 SWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred cccHHHHHHhcCCEEEEEecCC
Confidence 1134578888999988887653
No 287
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.86 E-value=1.8 Score=35.38 Aligned_cols=93 Identities=23% Similarity=0.380 Sum_probs=63.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC----CC--C---eEEEeeChhHHhhcccCCCCeEEeeCCCCCC---------CC-
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF----PD--I---KCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA---------IP- 171 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~----p~--~---~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~---------~~- 171 (279)
+.+-.++||+=...|.++.-+.++. |. . +.+.+|+..+.. -+.|.-+.+|+.++ +.
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaP-----I~GV~qlq~DIT~~stae~Ii~hfgg 113 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAP-----IEGVIQLQGDITSASTAEAIIEHFGG 113 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCc-----cCceEEeecccCCHhHHHHHHHHhCC
Confidence 5677899999999999999888865 21 1 388889865543 24666777887653 12
Q ss_pred -ccceeeehh-----hhccCCh----hHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 172 -QANAVLLKW-----ILHNWND----EESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 172 -~~D~v~~~~-----vlh~~~~----~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
.+|+|++-. -+|++.. +-....|.-...+|+ |||.++
T Consensus 114 ekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk---~Gg~FV 160 (294)
T KOG1099|consen 114 EKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK---PGGSFV 160 (294)
T ss_pred CCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec---CCCeee
Confidence 389888743 4666543 233455666677889 798765
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=88.74 E-value=3 Score=36.66 Aligned_cols=94 Identities=21% Similarity=0.219 Sum_probs=65.7
Q ss_pred CEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCC-eEEeeCC-CC----C-CCC-ccceeeehhhhc
Q 023625 115 KSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDN-LDFLGGN-MF----E-AIP-QANAVLLKWILH 183 (279)
Q Consensus 115 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~r-i~~~~~d-~~----~-~~~-~~D~v~~~~vlh 183 (279)
.+|+=+|+|+ |.++..+++.+.-.++++.|. +.-++.|++ .... +.....+ .. + ..+ ++|+++-..-
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-- 247 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-- 247 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC--
Confidence 3999999996 777788899888889999999 888999886 3222 2222221 10 1 112 5899886543
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
....+..+.++++ |||++.++-....+
T Consensus 248 ------~~~~~~~ai~~~r---~gG~v~~vGv~~~~ 274 (350)
T COG1063 248 ------SPPALDQALEALR---PGGTVVVVGVYGGE 274 (350)
T ss_pred ------CHHHHHHHHHHhc---CCCEEEEEeccCCc
Confidence 1246778888899 79999998876554
No 289
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=88.16 E-value=1 Score=37.79 Aligned_cols=74 Identities=22% Similarity=0.270 Sum_probs=48.5
Q ss_pred HHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCC
Q 023625 127 MARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKD 205 (279)
Q Consensus 127 ~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~ 205 (279)
++.+|.++.+..++++.|. +..++.+.+. +-+.-...+ .+...++|+|+++- |......+|+++.+.++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~-g~~~~~~~~-~~~~~~~Dlvvlav-----P~~~~~~~l~~~~~~~~--- 70 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALEL-GIIDEASTD-IEAVEDADLVVLAV-----PVSAIEDVLEEIAPYLK--- 70 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHT-TSSSEEESH-HHHGGCCSEEEE-S------HHHHHHHHHHHHCGS----
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHC-CCeeeccCC-HhHhcCCCEEEEcC-----CHHHHHHHHHHhhhhcC---
Confidence 4678888889999999999 8888888654 222222222 12234689999864 55678899999999888
Q ss_pred CCcEE
Q 023625 206 EGGKV 210 (279)
Q Consensus 206 pgG~l 210 (279)
+|..+
T Consensus 71 ~~~iv 75 (258)
T PF02153_consen 71 PGAIV 75 (258)
T ss_dssp TTSEE
T ss_pred CCcEE
Confidence 56533
No 290
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=88.15 E-value=4.4 Score=34.32 Aligned_cols=124 Identities=10% Similarity=0.176 Sum_probs=71.9
Q ss_pred EEEEecCCccHHHHHHHHHCCCCe-EEEeeC-hhHHhhcccCCCCeEEeeCCCCC-C----CCccceeeehhhhccCCh-
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIK-CTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-A----IPQANAVLLKWILHNWND- 187 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~----~~~~D~v~~~~vlh~~~~- 187 (279)
+++|+=||.|.++..+.+.. .+ +...|. +..++..+..-+. .+..+|+.+ . .+.+|+++..-....++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~-~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~fS~a 78 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPN-KLIEGDITKIDEKDFIPDIDLLTGGFPCQPFSIA 78 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCC-CCccCccccCchhhcCCCCCEEEeCCCChhhhHH
Confidence 68999999999999988864 44 667888 6666655543111 245566654 1 235888887554433321
Q ss_pred -------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCC
Q 023625 188 -------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGF 260 (279)
Q Consensus 188 -------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf 260 (279)
+....++.+..+.++. -.-+++++|.+..-... .......++.+.|++.||
T Consensus 79 g~~~~~~d~r~~L~~~~~~~i~~--~~P~~~v~ENV~g~~~~--------------------~~~~~~~~i~~~l~~~GY 136 (275)
T cd00315 79 GKRKGFEDTRGTLFFEIIRILKE--KKPKYFLLENVKGLLTH--------------------DNGNTLKVILNTLEELGY 136 (275)
T ss_pred hhcCCCCCchHHHHHHHHHHHHh--cCCCEEEEEcCcchhcc--------------------CchHHHHHHHHHHHhCCc
Confidence 1122344444444432 12457888876432110 011245678888899998
Q ss_pred ceeE
Q 023625 261 SHYK 264 (279)
Q Consensus 261 ~~~~ 264 (279)
.+..
T Consensus 137 ~~~~ 140 (275)
T cd00315 137 NVYW 140 (275)
T ss_pred EEEE
Confidence 8543
No 291
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=87.99 E-value=2.4 Score=36.14 Aligned_cols=103 Identities=14% Similarity=0.167 Sum_probs=69.4
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCC-CCeEEEeeC-hhHHhhcc----cC-CCCeEEeeCCCCCC----CC-ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFP-DIKCTVFDL-PHVVDNLQ----GT-NDNLDFLGGNMFEA----IP-QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~----~~-~~ri~~~~~d~~~~----~~-~~D~v~~ 178 (279)
..++.+|||+-++.|.=+..+++... ...++..|+ +.-+...+ .. ...+.....|.... .+ .||.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 45678999999999999999999987 568999998 55554443 22 35666666665442 12 3787776
Q ss_pred ------hhhhccCCh-------h-------HHHHHHHHHHHhC----CCCCCCcEEEEEeee
Q 023625 179 ------KWILHNWND-------E-------ESVKLLKKCKEAI----PSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ------~~vlh~~~~-------~-------~~~~~L~~~~~~L----~~~~pgG~lli~e~~ 216 (279)
..++..-++ + --.++|+++.+.+ + |||+++...--
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k---~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK---PGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE---EEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc---CCCeEEEEecc
Confidence 112222221 1 1257899999999 9 79988876643
No 292
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=87.50 E-value=1.2 Score=39.05 Aligned_cols=42 Identities=24% Similarity=0.556 Sum_probs=33.2
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeCh-hHHhhcc
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLP-HVVDNLQ 153 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~ 153 (279)
+.+...++|||.|.|+++.-+.-.| ++.+.++|-. ...+.|+
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~ 193 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQ 193 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHH
Confidence 6788999999999999999888776 5789999973 3344443
No 293
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=86.79 E-value=1.2 Score=37.38 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=32.0
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-----CCCeEEEeeChh
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-----PDIKCTVFDLPH 147 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~~~ 147 (279)
+.+...++|+|||.|.++..+++.. +...++.+|...
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRAS 57 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCc
Confidence 4677899999999999999999998 567899999743
No 294
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.77 E-value=5 Score=34.62 Aligned_cols=95 Identities=13% Similarity=0.182 Sum_probs=66.3
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC----------CC--cccee
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA----------IP--QANAV 176 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~----------~~--~~D~v 176 (279)
+....+||=+|+|+ |.++...++++.-.++++.|+ +.-++.|++.+............+ .. .+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56688999999985 888888889988889999999 899999997533322222221111 11 27888
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+-...++ .-++-+..+++ +||.++++..-
T Consensus 247 ~dCsG~~--------~~~~aai~a~r---~gGt~vlvg~g 275 (354)
T KOG0024|consen 247 FDCSGAE--------VTIRAAIKATR---SGGTVVLVGMG 275 (354)
T ss_pred EEccCch--------HHHHHHHHHhc---cCCEEEEeccC
Confidence 8776654 34556677888 69998777743
No 295
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=86.67 E-value=2.1 Score=41.19 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=55.5
Q ss_pred CCEEEEecCCccHHHHHHHHHC-------C-----CCeEEEeeC-h---hHHhhcc----------------------c-
Q 023625 114 LKSLVDVAGGTGIMARAIATAF-------P-----DIKCTVFDL-P---HVVDNLQ----------------------G- 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~-~---~~~~~a~----------------------~- 154 (279)
.-+|+|+|=|+|......++.+ | .++++.++. | +.+..+. .
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 4689999999999888777655 4 467888885 3 1111110 0
Q ss_pred -----CCC--CeEEeeCCCCCC---CC-ccceeeehhhhc-cCChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 155 -----TND--NLDFLGGNMFEA---IP-QANAVLLKWILH-NWNDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 155 -----~~~--ri~~~~~d~~~~---~~-~~D~v~~~~vlh-~~~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
..+ ++++..||+.+- .. .+|++++--.-- .-++=-...+++++++.++ |||++.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~---~~~~~~ 203 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR---PGATLA 203 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC---CCCEEE
Confidence 012 233556776542 22 488888732110 0011112367888999899 688765
No 296
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=85.84 E-value=1.4 Score=36.82 Aligned_cols=35 Identities=17% Similarity=0.413 Sum_probs=26.0
Q ss_pred CCEEEEecCCccHHHHHHHHHCC--------CCeEEEeeChhH
Q 023625 114 LKSLVDVAGGTGIMARAIATAFP--------DIKCTVFDLPHV 148 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p--------~~~~~~~D~~~~ 148 (279)
.-+|+|+|+|+|.++..+++... .+++++++..+.
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~ 61 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPY 61 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHH
Confidence 36999999999999999988653 358999998433
No 297
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.74 E-value=6.4 Score=33.82 Aligned_cols=89 Identities=16% Similarity=0.028 Sum_probs=50.1
Q ss_pred CCEEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHH
Q 023625 114 LKSLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 114 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
..+|.=||+|. +.++..+.+.....+++++|. ++..+.++....... ...+..+...++|+|++.- +....
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvViiav-----p~~~~ 79 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDR-VTTSAAEAVKGADLVILCV-----PVGAS 79 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCce-ecCCHHHHhcCCCEEEECC-----CHHHH
Confidence 45788888775 234444444333247899998 666666654311111 1112211234689988854 33445
Q ss_pred HHHHHHHHHhCCCCCCCcEEE
Q 023625 191 VKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~ll 211 (279)
..+++.+...++ ++..+.
T Consensus 80 ~~v~~~l~~~l~---~~~iv~ 97 (307)
T PRK07502 80 GAVAAEIAPHLK---PGAIVT 97 (307)
T ss_pred HHHHHHHHhhCC---CCCEEE
Confidence 667788877888 565443
No 298
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=83.63 E-value=6.8 Score=36.34 Aligned_cols=96 Identities=13% Similarity=0.248 Sum_probs=61.2
Q ss_pred CCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCC-eEEeeC---------------CCC-------
Q 023625 113 GLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDN-LDFLGG---------------NMF------- 167 (279)
Q Consensus 113 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~r-i~~~~~---------------d~~------- 167 (279)
+..+|+=+|+|. |..++..++... ++++++|. ++..+.++..+.. +.+-.. ++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 578999999886 666667777664 58999999 8888888875333 111110 110
Q ss_pred CC-CCccceeeehhhhccCChhHHHHH-HHHHHHhCCCCCCCcEEEEEee
Q 023625 168 EA-IPQANAVLLKWILHNWNDEESVKL-LKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 168 ~~-~~~~D~v~~~~vlh~~~~~~~~~~-L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.+ ..++|+++-..-. +...+..+ .+...+.++ |||.++.+-.
T Consensus 243 ~~~~~gaDVVIetag~---pg~~aP~lit~~~v~~mk---pGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALI---PGKPAPKLITAEMVASMK---PGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCC---CcccCcchHHHHHHHhcC---CCCEEEEEcc
Confidence 00 1358998875532 22112234 589999999 7998776643
No 299
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=83.33 E-value=3.6 Score=28.77 Aligned_cols=81 Identities=20% Similarity=0.328 Sum_probs=48.8
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhh--hcCCeeC-------CHHHHH
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVS--LFRGKER-------SVDDWK 252 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~r-------~~~e~~ 252 (279)
|=|.+.++..++|.++....+ +.+++.= -|.. + ++.+...+ .+.+..| .++++.
T Consensus 5 LIHYp~~d~~~~l~~La~~t~-----~~~ifTf--AP~T----~------~L~~m~~iG~lFP~~dRsp~i~~~~e~~l~ 67 (97)
T PF07109_consen 5 LIHYPAEDAAQMLAHLASRTR-----GSLIFTF--APRT----P------LLALMHAIGKLFPRPDRSPRIYPHREEDLR 67 (97)
T ss_pred EeccCHHHHHHHHHHHHHhcc-----CcEEEEE--CCCC----H------HHHHHHHHhccCCCCCCCCcEEEeCHHHHH
Confidence 335788999999999988766 5555521 1111 0 11111111 1223333 778999
Q ss_pred HHHHHCCCceeEEEecC-Cce--eEEEEeC
Q 023625 253 KLFLAAGFSHYKITPML-GVR--SLIEAYP 279 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~~-~~~--~~i~~~~ 279 (279)
+.++++||++.+...+. +++ .++|++|
T Consensus 68 ~~l~~~g~~~~r~~ris~gFY~S~llE~~r 97 (97)
T PF07109_consen 68 RALAAAGWRIGRTERISSGFYISQLLEAVR 97 (97)
T ss_pred HHHHhCCCeeeecccccCcChHHHHhhccC
Confidence 99999999998887764 332 3555543
No 300
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=80.83 E-value=9.7 Score=32.24 Aligned_cols=78 Identities=10% Similarity=0.051 Sum_probs=47.3
Q ss_pred EEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHH
Q 023625 116 SLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVK 192 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~ 192 (279)
+|.=||+|. |.++..|.++ +.+++++|. ++.++.+... ..+.....+. +...++|+|++.- +++...+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~~~~~aDlVilav-----p~~~~~~ 72 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER-GLVDEASTDL-SLLKDCDLVILAL-----PIGLLLP 72 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC-CCcccccCCH-hHhcCCCEEEEcC-----CHHHHHH
Confidence 455677664 4455555544 457999998 6677666543 1122111111 1234589998853 5666778
Q ss_pred HHHHHHHhCC
Q 023625 193 LLKKCKEAIP 202 (279)
Q Consensus 193 ~L~~~~~~L~ 202 (279)
+++++.+.++
T Consensus 73 ~~~~l~~~l~ 82 (279)
T PRK07417 73 PSEQLIPALP 82 (279)
T ss_pred HHHHHHHhCC
Confidence 8999988888
No 301
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=80.46 E-value=11 Score=27.80 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=35.4
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEecCCc
Q 023625 192 KLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITPMLGV 271 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~ 271 (279)
.+++++++.++ |||.+.-.. ....+++-|.++||.+.+....++-
T Consensus 71 e~~~~l~~~~~---~~~~l~Tys--------------------------------~a~~Vr~~L~~aGF~v~~~~g~g~K 115 (124)
T PF05430_consen 71 ELFKKLARLSK---PGGTLATYS--------------------------------SAGAVRRALQQAGFEVEKVPGFGRK 115 (124)
T ss_dssp HHHHHHHHHEE---EEEEEEES----------------------------------BHHHHHHHHHCTEEEEEEE-STTS
T ss_pred HHHHHHHHHhC---CCcEEEEee--------------------------------chHHHHHHHHHcCCEEEEcCCCCCc
Confidence 57999999999 687654311 1234788999999998877766665
Q ss_pred eeEEEEe
Q 023625 272 RSLIEAY 278 (279)
Q Consensus 272 ~~~i~~~ 278 (279)
..++.+.
T Consensus 116 r~~~~a~ 122 (124)
T PF05430_consen 116 REMLRAV 122 (124)
T ss_dssp SEEEEEE
T ss_pred chheEEE
Confidence 5555443
No 302
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=80.35 E-value=4 Score=30.72 Aligned_cols=72 Identities=21% Similarity=0.353 Sum_probs=46.6
Q ss_pred eEEEeeC-hhHHhhccc------CCCCeEEeeCCCCC---CCC--ccceeeehhhhccCC---------hhHHHHHHHHH
Q 023625 139 KCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFE---AIP--QANAVLLKWILHNWN---------DEESVKLLKKC 197 (279)
Q Consensus 139 ~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~---~~~--~~D~v~~~~vlh~~~---------~~~~~~~L~~~ 197 (279)
++.+||+ +++++.+++ ..+|++++..+=.. -.+ ..|++++.. -.+| .+...+.|+.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5789999 888888774 24689888765433 123 477777642 1122 33567889999
Q ss_pred HHhCCCCCCCcEEEEEee
Q 023625 198 KEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 198 ~~~L~~~~pgG~lli~e~ 215 (279)
.+.|+ |||.+.|+-.
T Consensus 79 l~lL~---~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLK---PGGIITIVVY 93 (140)
T ss_dssp HHHEE---EEEEEEEEE-
T ss_pred HHhhc---cCCEEEEEEe
Confidence 99999 7998887653
No 303
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=78.85 E-value=0.86 Score=31.57 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=24.0
Q ss_pred ccccccCceeecCCCeEecChhcchhhcCC
Q 023625 2 RILVHSGFFAQQKDDEYFLTPASRLLLKDT 31 (279)
Q Consensus 2 r~L~~~g~l~~~~~~~y~~t~~s~~L~~~~ 31 (279)
.+|...|+++.+..|.|++|+.|+.+...+
T Consensus 62 ~~L~~aGli~~~~rG~~~iT~~G~~~l~~~ 91 (92)
T PF14338_consen 62 SYLKKAGLIERPKRGIWRITEKGRKALAEH 91 (92)
T ss_pred HHHHHCCCccCCCCCceEECHhHHHHHhhC
Confidence 368889999998888999999998444433
No 304
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=78.77 E-value=12 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.412 Sum_probs=24.0
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
..-|+|+|=|+|..=-+|.+.+|+-++.++|.
T Consensus 29 ~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 29 PGPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp -S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred CCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 47899999999999999999999999999995
No 305
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=78.10 E-value=35 Score=27.69 Aligned_cols=97 Identities=19% Similarity=0.274 Sum_probs=54.3
Q ss_pred CCCEEEEecCCcc----HHHHHHHHHCCCCeEEEeeC-hhHHhhcc------cCCCCeEEeeCCCCC----CCCccceee
Q 023625 113 GLKSLVDVAGGTG----IMARAIATAFPDIKCTVFDL-PHVVDNLQ------GTNDNLDFLGGNMFE----AIPQANAVL 177 (279)
Q Consensus 113 ~~~~vlDvG~G~G----~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------~~~~ri~~~~~d~~~----~~~~~D~v~ 177 (279)
..+.|+++.++.| .++.+.+.+.-+-+++.+-. ++.....+ ...+-++|+.++-.+ .+.+.|.++
T Consensus 41 nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~v 120 (218)
T PF07279_consen 41 NAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVV 120 (218)
T ss_pred cceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEE
Confidence 3568898864433 34445555555555554432 22222211 124567998887533 234688877
Q ss_pred ehhhhccCChhHHH-HHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 178 LKWILHNWNDEESV-KLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 178 ~~~vlh~~~~~~~~-~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
.- ...++.. ++|+.+. +. |.|.+++.......
T Consensus 121 VD-----c~~~d~~~~vl~~~~--~~---~~GaVVV~~Na~~r 153 (218)
T PF07279_consen 121 VD-----CKREDFAARVLRAAK--LS---PRGAVVVCYNAFSR 153 (218)
T ss_pred Ee-----CCchhHHHHHHHHhc--cC---CCceEEEEeccccC
Confidence 63 3445566 7777543 44 46788887766553
No 306
>PTZ00357 methyltransferase; Provisional
Probab=77.35 E-value=13 Score=35.58 Aligned_cols=130 Identities=12% Similarity=0.113 Sum_probs=74.9
Q ss_pred CChhhhhhcCchHHHHHHHHhhhcch-hhHH-----------HH------HHhchhhh--CCCCEEEEecCCccHHHHHH
Q 023625 72 KKVWDRVADEPKFKSLFYDLMITDSE-LIAG-----------IV------IKDCKEVF--EGLKSLVDVAGGTGIMARAI 131 (279)
Q Consensus 72 ~~~~~~~~~~~~~~~~f~~~m~~~~~-~~~~-----------~~------~~~~~~~~--~~~~~vlDvG~G~G~~~~~l 131 (279)
...|+.+++|+-.-..|.+++...-. +... .+ ++..+..- .....|+=||+|.|-+....
T Consensus 639 S~TYEVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdra 718 (1072)
T PTZ00357 639 SGVYEVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDEC 718 (1072)
T ss_pred hhhHHHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHH
Confidence 34589999999888888888765321 1100 00 00011000 11235899999999998877
Q ss_pred HHHCC----CCeEEEeeC-hhHHhhc--c--c-----C-----CCCeEEeeCCCCC-CCC-------------ccceeee
Q 023625 132 ATAFP----DIKCTVFDL-PHVVDNL--Q--G-----T-----NDNLDFLGGNMFE-AIP-------------QANAVLL 178 (279)
Q Consensus 132 ~~~~p----~~~~~~~D~-~~~~~~a--~--~-----~-----~~ri~~~~~d~~~-~~~-------------~~D~v~~ 178 (279)
+++.. .+++.+++- |+.+... + . . +++|+++..|+.+ ..+ .+|++++
T Consensus 719 LrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 719 LHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVS 798 (1072)
T ss_pred HHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehH
Confidence 77654 356777776 4532211 1 1 1 4679999999976 221 4888875
Q ss_pred hhhhccCChhH-HHHHHHHHHHhCC
Q 023625 179 KWILHNWNDEE-SVKLLKKCKEAIP 202 (279)
Q Consensus 179 ~~vlh~~~~~~-~~~~L~~~~~~L~ 202 (279)
..|--|.|++ ..+-|.-+.+.||
T Consensus 799 -ELLGSFGDNELSPECLDGaQrfLK 822 (1072)
T PTZ00357 799 -ELLGSLGDNELSPECLEAFHAQLE 822 (1072)
T ss_pred -hhhcccccccCCHHHHHHHHHhhh
Confidence 4455555542 2234555555555
No 307
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=77.22 E-value=21 Score=28.57 Aligned_cols=103 Identities=13% Similarity=0.099 Sum_probs=67.3
Q ss_pred CCCEEEEecCCccHHHHHHHH----HCCCCeEEEeeChhH--HhhcccCCCCeEEeeCCCCCCC--------C-cc-cee
Q 023625 113 GLKSLVDVAGGTGIMARAIAT----AFPDIKCTVFDLPHV--VDNLQGTNDNLDFLGGNMFEAI--------P-QA-NAV 176 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~----~~p~~~~~~~D~~~~--~~~a~~~~~ri~~~~~d~~~~~--------~-~~-D~v 176 (279)
....|++.|.-.|.-+.-++. .....++++.|+... -..|++. ++|.|+.|+-.+|- . .+ -+.
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~-p~i~f~egss~dpai~eqi~~~~~~y~kIf 147 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV-PDILFIEGSSTDPAIAEQIRRLKNEYPKIF 147 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC-CCeEEEeCCCCCHHHHHHHHHHhcCCCcEE
Confidence 457899999766655544443 223467888887322 2334444 89999999877641 1 12 233
Q ss_pred eehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC
Q 023625 177 LLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 221 (279)
Q Consensus 177 ~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~ 221 (279)
++-..-| +-+.+.+.|+-..+.|. .|..+++.|..+++-.
T Consensus 148 vilDsdH--s~~hvLAel~~~~plls---aG~Y~vVeDs~v~dlp 187 (237)
T COG3510 148 VILDSDH--SMEHVLAELKLLAPLLS---AGDYLVVEDSNVNDLP 187 (237)
T ss_pred EEecCCc--hHHHHHHHHHHhhhHhh---cCceEEEecccccCCC
Confidence 3444444 45667788888889998 5888988888887754
No 308
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=77.07 E-value=7.1 Score=34.23 Aligned_cols=61 Identities=20% Similarity=0.370 Sum_probs=39.0
Q ss_pred CchHHHHHHHHhhhcchhhHHHHHHhchh-hhCCCCEEEEecCCccHHHHHHHHHC----C----CCeEEEeeChhH
Q 023625 81 EPKFKSLFYDLMITDSELIAGIVIKDCKE-VFEGLKSLVDVAGGTGIMARAIATAF----P----DIKCTVFDLPHV 148 (279)
Q Consensus 81 ~~~~~~~f~~~m~~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~----p----~~~~~~~D~~~~ 148 (279)
-|+....|...+..+ ++..+.. ..+...++|++|.|+|.++.-+++.. | .+++.+++..+-
T Consensus 51 Apels~lFGella~~-------~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~ 120 (370)
T COG1565 51 APELSQLFGELLAEQ-------FLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPE 120 (370)
T ss_pred chhHHHHHHHHHHHH-------HHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHH
Confidence 356666666554432 2222221 13446789999999999999888754 4 568888887333
No 309
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=76.67 E-value=3.9 Score=34.72 Aligned_cols=67 Identities=12% Similarity=0.133 Sum_probs=52.5
Q ss_pred hhHHhhcccCCCCeEEeeCCCCC-----CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 146 PHVVDNLQGTNDNLDFLGGNMFE-----AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 146 ~~~~~~a~~~~~ri~~~~~d~~~-----~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
+.+-+.+++...||.++.+|+.+ |..+.|-|++..+=.-++|.+...++.++.+.+. +|.++++-..
T Consensus 296 ~~~YEsir~n~~RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~---~gA~VifRta 367 (414)
T COG5379 296 EGVYESIRQNLRRVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAE---AGARVIFRTA 367 (414)
T ss_pred hhhHHHHHhhhhheeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccC---CCcEEEEecc
Confidence 44555555555899999999865 3346899999888777799999999999999999 6887776543
No 310
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=75.93 E-value=6.9 Score=27.89 Aligned_cols=81 Identities=25% Similarity=0.391 Sum_probs=49.1
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--C-----CccceeeehhhhccCChhHHH
Q 023625 122 GGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--I-----PQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 122 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~-----~~~D~v~~~~vlh~~~~~~~~ 191 (279)
||.|.++..+++.. .+.+++++|. ++.++.++.. .+.++.||..++ + ..+|.+++..- +|+...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~----~d~~n~ 77 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--GVEVIYGDATDPEVLERAGIEKADAVVILTD----DDEENL 77 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--TSEEEES-TTSHHHHHHTTGGCESEEEEESS----SHHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--ccccccccchhhhHHhhcCccccCEEEEccC----CHHHHH
Confidence 45567777777654 3347999999 7888887764 388999999874 1 24777666321 344444
Q ss_pred HHHHHHHHhCCCCCCCcEEEE
Q 023625 192 KLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli 212 (279)
.+...+++ +. |..++++
T Consensus 78 ~~~~~~r~-~~---~~~~ii~ 94 (116)
T PF02254_consen 78 LIALLARE-LN---PDIRIIA 94 (116)
T ss_dssp HHHHHHHH-HT---TTSEEEE
T ss_pred HHHHHHHH-HC---CCCeEEE
Confidence 44444444 44 3555554
No 311
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=74.67 E-value=12 Score=31.66 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=34.9
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCe----EEEeeChhHHhhcccCCCCeEEeeC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIK----CTVFDLPHVVDNLQGTNDNLDFLGG 164 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~----~~~~D~~~~~~~a~~~~~ri~~~~~ 164 (279)
.+...||=+|.+.|....-|.+.+|+++ ++.+|..+.....++. ..|+++..
T Consensus 57 ~~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~~l~~l-~~v~l~~~ 112 (294)
T PF01358_consen 57 DGPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCISLEEL-SNVTLIQR 112 (294)
T ss_dssp TT-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---GGGTT--TTEEEEES
T ss_pred CCceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhhhhccc-CcEEeehh
Confidence 3446899999999999999999998855 9999985555555554 44666554
No 312
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=73.91 E-value=12 Score=33.79 Aligned_cols=104 Identities=19% Similarity=0.266 Sum_probs=68.9
Q ss_pred CCCEEEEec-CCccH------HHHHHHHHCCCCeEEEeeC--hhHHhhcccCC--CCeEEeeCCCCC-CC----------
Q 023625 113 GLKSLVDVA-GGTGI------MARAIATAFPDIKCTVFDL--PHVVDNLQGTN--DNLDFLGGNMFE-AI---------- 170 (279)
Q Consensus 113 ~~~~vlDvG-~G~G~------~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~--~ri~~~~~d~~~-~~---------- 170 (279)
+...|+=|| -|+|- ++..+.++....-++..|. |.++++.+.++ -++.|..-+-.. |.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 456788887 34443 3444444434445788897 88888877542 345555443222 32
Q ss_pred --CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 171 --PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 171 --~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
..+|+++.--.=.+.-|++...-+++++++++ |.-.++|+|.....
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~---P~E~llVvDam~GQ 226 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVIN---PDETLLVVDAMIGQ 226 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcC---CCeEEEEEecccch
Confidence 13799998555444468888999999999999 79999999976643
No 313
>PHA01634 hypothetical protein
Probab=73.50 E-value=6.3 Score=29.15 Aligned_cols=40 Identities=8% Similarity=-0.013 Sum_probs=30.2
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ 153 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 153 (279)
.+++|+|||++.|.-++.++.+... +++.+.. +...+..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK-~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGAS-FVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCcc-EEEEeccCHHHHHHHH
Confidence 4689999999999999999987433 5777776 55555444
No 314
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.89 E-value=19 Score=31.19 Aligned_cols=122 Identities=15% Similarity=0.216 Sum_probs=68.5
Q ss_pred EEEecCCccHHHHHHHHHCCCCeE-EEeeC-hhHHhhcccCCCCeEEeeCCCCC-C---CCccceeeehhhhccCC----
Q 023625 117 LVDVAGGTGIMARAIATAFPDIKC-TVFDL-PHVVDNLQGTNDNLDFLGGNMFE-A---IPQANAVLLKWILHNWN---- 186 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~p~~~~-~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~---~~~~D~v~~~~vlh~~~---- 186 (279)
|+|+=||.|.++..+.++. .++ ...|. +..++.-+..-+. .+..+|+.+ . .+..|+++..-....++
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEecCCCcccchhcc
Confidence 5889999999999998764 554 45787 5555554432122 445566654 1 34578887654443333
Q ss_pred ----hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCce
Q 023625 187 ----DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSH 262 (279)
Q Consensus 187 ----~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~ 262 (279)
++..-.++.+..+.++. -.-+++++|.+..-.. . .......++.+.|++.|+.+
T Consensus 78 ~~~~~d~r~~L~~~~~r~i~~--~~P~~~v~ENV~~l~~------------------~--~~~~~~~~i~~~l~~~GY~v 135 (315)
T TIGR00675 78 RKGFEDTRGTLFFEIVRILKE--KKPKFFLLENVKGLVS------------------H--DKGRTFKVIIETLEELGYKV 135 (315)
T ss_pred cCCCCCchhhHHHHHHHHHhh--cCCCEEEeeccHHHHh------------------c--ccchHHHHHHHHHHhCCCEE
Confidence 11222344444444432 1235788886642110 0 11124567788888999986
Q ss_pred e
Q 023625 263 Y 263 (279)
Q Consensus 263 ~ 263 (279)
.
T Consensus 136 ~ 136 (315)
T TIGR00675 136 Y 136 (315)
T ss_pred E
Confidence 4
No 315
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=71.95 E-value=6.4 Score=32.81 Aligned_cols=94 Identities=19% Similarity=0.301 Sum_probs=50.5
Q ss_pred CCEEEEecCCccHHHHH---HHHHC--CCCeEEEeeC-hhHHh--------------------------hccc-------
Q 023625 114 LKSLVDVAGGTGIMARA---IATAF--PDIKCTVFDL-PHVVD--------------------------NLQG------- 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~---l~~~~--p~~~~~~~D~-~~~~~--------------------------~a~~------- 154 (279)
.+.|+|+|+-.|..++. +++.+ ++-++.++|. ..+-+ ..+.
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 57999999988876654 44444 3456889983 21110 0010
Q ss_pred CCCCeEEeeCCCCCCCC---c--cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 155 TNDNLDFLGGNMFEAIP---Q--ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 155 ~~~ri~~~~~d~~~~~~---~--~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+++.++.|.|.+..| . .-++.+-. ++-+ -....|+.++..|. |||.|++-|
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~---DlYe-sT~~aLe~lyprl~---~GGiIi~DD 212 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDC---DLYE-STKDALEFLYPRLS---PGGIIIFDD 212 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE------SHH-HHHHHHHHHGGGEE---EEEEEEESS
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEec---cchH-HHHHHHHHHHhhcC---CCeEEEEeC
Confidence 14689999999865333 1 22222211 1212 24688999999999 688766644
No 316
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=70.76 E-value=27 Score=30.35 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCCCEEEEecC-CccHHHHHHHHH-CCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChh
Q 023625 112 EGLKSLVDVAG-GTGIMARAIATA-FPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDE 188 (279)
Q Consensus 112 ~~~~~vlDvG~-G~G~~~~~l~~~-~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~ 188 (279)
.+..+||=+|+ |.|.++..++++ ....++++.|. +.-++.++.. +.. ....+. ....++|+|+-.-- ..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~-~~~~~~-~~~~g~d~viD~~G-----~~ 233 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DET-YLIDDI-PEDLAVDHAFECVG-----GR 233 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cce-eehhhh-hhccCCcEEEECCC-----CC
Confidence 45678888885 445566666775 55668888887 6566666542 221 111111 11124787774221 00
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 189 ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 189 ~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.....+....+.++ ++|+++++..
T Consensus 234 ~~~~~~~~~~~~l~---~~G~iv~~G~ 257 (341)
T cd08237 234 GSQSAINQIIDYIR---PQGTIGLMGV 257 (341)
T ss_pred ccHHHHHHHHHhCc---CCcEEEEEee
Confidence 01245777888899 7999998764
No 317
>PRK08507 prephenate dehydrogenase; Validated
Probab=70.72 E-value=21 Score=30.07 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=45.5
Q ss_pred EEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHH
Q 023625 116 SLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVK 192 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~ 192 (279)
+|.=||+|. |.++..+.+.....+++++|. +...+.+... .-+.. ..+.. +...+|+|++. .+++....
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~-g~~~~-~~~~~-~~~~aD~Vila-----vp~~~~~~ 73 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL-GLVDE-IVSFE-ELKKCDVIFLA-----IPVDAIIE 73 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC-CCCcc-cCCHH-HHhcCCEEEEe-----CcHHHHHH
Confidence 456677665 445555555433457888898 6666655443 11111 11211 12248988875 36677788
Q ss_pred HHHHHHHhCC
Q 023625 193 LLKKCKEAIP 202 (279)
Q Consensus 193 ~L~~~~~~L~ 202 (279)
+++.+.+ ++
T Consensus 74 ~~~~l~~-l~ 82 (275)
T PRK08507 74 ILPKLLD-IK 82 (275)
T ss_pred HHHHHhc-cC
Confidence 8888888 77
No 318
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=70.48 E-value=40 Score=25.85 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCCEEEEecCCccHHH--HHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehhhhccCChhH
Q 023625 113 GLKSLVDVAGGTGIMA--RAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDEE 189 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~~ 189 (279)
.+++||=||||.=..- ..|++. +.++++++ |+..+...+. +.+++....+.+ ...++|+++..- ++++
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l-~~i~~~~~~~~~~dl~~a~lViaaT-----~d~e 82 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKEL-PYITWKQKTFSNDDIKDAHLIYAAT-----NQHA 82 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhc-cCcEEEecccChhcCCCceEEEECC-----CCHH
Confidence 4678999998865543 344443 55677775 4443333333 466766666655 455789888742 4444
Q ss_pred HHHHHHHHH
Q 023625 190 SVKLLKKCK 198 (279)
Q Consensus 190 ~~~~L~~~~ 198 (279)
.-..+....
T Consensus 83 ~N~~i~~~a 91 (157)
T PRK06719 83 VNMMVKQAA 91 (157)
T ss_pred HHHHHHHHH
Confidence 444444443
No 319
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=70.41 E-value=42 Score=27.52 Aligned_cols=80 Identities=14% Similarity=0.174 Sum_probs=47.9
Q ss_pred CCCEEEEecCCccHHHH--HHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehhhhccCChh
Q 023625 113 GLKSLVDVAGGTGIMAR--AIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKWILHNWNDE 188 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh~~~~~ 188 (279)
...+||=||||.-..-. .|++....++++.-++ ++..+.++ ..+++++..++.. +..++++|+..- +|+
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~--~~~i~~~~r~~~~~dl~g~~LViaAT-----dD~ 96 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK--YGNLKLIKGNYDKEFIKDKHLIVIAT-----DDE 96 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh--CCCEEEEeCCCChHHhCCCcEEEECC-----CCH
Confidence 46789999999887654 3444333344444455 44444433 2679999888765 455788887753 454
Q ss_pred HHHHHHHHHHH
Q 023625 189 ESVKLLKKCKE 199 (279)
Q Consensus 189 ~~~~~L~~~~~ 199 (279)
+.-+-+.+.++
T Consensus 97 ~vN~~I~~~a~ 107 (223)
T PRK05562 97 KLNNKIRKHCD 107 (223)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 320
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=70.33 E-value=36 Score=29.44 Aligned_cols=91 Identities=14% Similarity=0.086 Sum_probs=55.4
Q ss_pred hCCCCEEEEec-CCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-CCccceeeehhhhccCCh
Q 023625 111 FEGLKSLVDVA-GGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-IPQANAVLLKWILHNWND 187 (279)
Q Consensus 111 ~~~~~~vlDvG-~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-~~~~D~v~~~~vlh~~~~ 187 (279)
..+..+||=.| ++.|..+..+++.. +.++++.+. ++-.+.+++......+ |..+. ...+|+++.....
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~~Ga~~vi---~~~~~~~~~~d~~i~~~~~----- 233 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALALGAASAG---GAYDTPPEPLDAAILFAPA----- 233 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHhCCceec---cccccCcccceEEEECCCc-----
Confidence 45667888777 45666777777775 567888887 6667777664221111 11111 1247766543221
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
...+....++++ ++|+++++...
T Consensus 234 ---~~~~~~~~~~l~---~~G~~v~~G~~ 256 (329)
T TIGR02822 234 ---GGLVPPALEALD---RGGVLAVAGIH 256 (329)
T ss_pred ---HHHHHHHHHhhC---CCcEEEEEecc
Confidence 135777888899 79999887653
No 321
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=69.41 E-value=50 Score=25.42 Aligned_cols=88 Identities=24% Similarity=0.335 Sum_probs=51.9
Q ss_pred ecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC--C----CccceeeehhhhccCChhHH
Q 023625 120 VAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA--I----PQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 120 vG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~--~----~~~D~v~~~~vlh~~~~~~~ 190 (279)
|=||+|..+..+++.. .+.+++++-. +.-.+. ..+++++.+|+.++ . .++|+++..-.-. ..+
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~----~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~-~~~--- 74 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED----SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP-PKD--- 74 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH----CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST-TTH---
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCchhccc----ccccccceeeehhhhhhhhhhhhcchhhhhhhhh-ccc---
Confidence 3477888888777754 2367887776 443333 47899999999874 1 3588887754321 122
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 191 VKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
....+++.++++.. +=.+++++...
T Consensus 75 ~~~~~~~~~a~~~~-~~~~~v~~s~~ 99 (183)
T PF13460_consen 75 VDAAKNIIEAAKKA-GVKRVVYLSSA 99 (183)
T ss_dssp HHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred cccccccccccccc-ccccceeeecc
Confidence 34444555544321 12356655543
No 322
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=69.13 E-value=4 Score=34.45 Aligned_cols=96 Identities=8% Similarity=0.097 Sum_probs=54.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------------CCC--Ce-EEeeC---CC-CCCCC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------------TND--NL-DFLGG---NM-FEAIP 171 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------------~~~--ri-~~~~~---d~-~~~~~ 171 (279)
-..++|||+|||+|.-.+....+.- ..+..+|. ..+++...- ..+ .+ ..... |. +....
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred ecCceeEecCCcccccchhhhhhcc-ceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 3578999999999999988777642 66777787 555532110 001 11 11111 11 11112
Q ss_pred --ccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 172 --QANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 172 --~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
.||+|.++-.++..+...... ...+..|.+ ++|.+++
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~--~~~r~~l~~--~D~~~~~ 232 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLY--LLHRPCLLK--TDGVFYV 232 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhH--hhhhhhcCC--ccchhhh
Confidence 589999999888666544332 222333433 6776654
No 323
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=69.02 E-value=8.4 Score=36.23 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=34.5
Q ss_pred HHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCC-CeEEEeeChh
Q 023625 103 VIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPD-IKCTVFDLPH 147 (279)
Q Consensus 103 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~~~ 147 (279)
+-..|. .+.+...|||++|.+|.++.-.++..|- .-++++|+.+
T Consensus 35 ln~ky~-fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 35 LNKKYK-FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred HHHHhc-cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 445554 3567789999999999999999999884 3588999833
No 324
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=68.54 E-value=9.6 Score=29.16 Aligned_cols=81 Identities=12% Similarity=0.169 Sum_probs=47.2
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------C-----CCCeEEeeCCCCCCCCccceeeehhhh
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------T-----NDNLDFLGGNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~-----~~ri~~~~~d~~~~~~~~D~v~~~~vl 182 (279)
+|.=+|+|.+..+.+..-..-+.+++.... ++.++..+. . ..++.+ ..|+.+-..++|+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~-t~dl~~a~~~ad~Iiia--- 76 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA-TTDLEEALEDADIIIIA--- 76 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE-ESSHHHHHTT-SEEEE----
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc-ccCHHHHhCcccEEEec---
Confidence 466678888776665554445568999988 555544332 1 122322 23332223468988874
Q ss_pred ccCChhHHHHHHHHHHHhCC
Q 023625 183 HNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 183 h~~~~~~~~~~L~~~~~~L~ 202 (279)
.|-.....+++++.+.++
T Consensus 77 --vPs~~~~~~~~~l~~~l~ 94 (157)
T PF01210_consen 77 --VPSQAHREVLEQLAPYLK 94 (157)
T ss_dssp --S-GGGHHHHHHHHTTTSH
T ss_pred --ccHHHHHHHHHHHhhccC
Confidence 344455788999999997
No 325
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=68.42 E-value=21 Score=29.46 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=42.1
Q ss_pred HHHhchhhhCCC--CEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhh--------ccc-C------CCCeEEeeCC
Q 023625 103 VIKDCKEVFEGL--KSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDN--------LQG-T------NDNLDFLGGN 165 (279)
Q Consensus 103 ~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~--------a~~-~------~~ri~~~~~d 165 (279)
++++.. +.+. .+|||.=+|-|.-+.-++.. ++++++++..+++.. +.. . ..|++++.+|
T Consensus 65 l~kA~G--lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d 140 (234)
T PF04445_consen 65 LAKAVG--LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGD 140 (234)
T ss_dssp HHHHTT---BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-
T ss_pred HHHHhC--CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCC
Confidence 444443 3433 49999999999999988864 679999998544432 111 1 2489999999
Q ss_pred CCC--CC--Cccceeee
Q 023625 166 MFE--AI--PQANAVLL 178 (279)
Q Consensus 166 ~~~--~~--~~~D~v~~ 178 (279)
..+ .. ..+|+|++
T Consensus 141 ~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 141 ALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp CCCHCCCHSS--SEEEE
T ss_pred HHHHHhhcCCCCCEEEE
Confidence 876 22 25898887
No 326
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=68.25 E-value=20 Score=28.88 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=40.0
Q ss_pred CCEEEEecCCccHHHH--HHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeeh
Q 023625 114 LKSLVDVAGGTGIMAR--AIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLK 179 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~ 179 (279)
+++||=||||.-.... .|++ -++++++++. .+.+....+. .+++++.+++.. ...++|+|+..
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~~~~~l~~l~~~-~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEELESELTLLAEQ-GGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCCCCHHHHHHHHc-CCEEEEeCCCCHHHhCCcEEEEEC
Confidence 5689999998765443 3333 3567777764 2222222222 489999998875 45578888874
No 327
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=67.44 E-value=29 Score=30.05 Aligned_cols=101 Identities=11% Similarity=0.095 Sum_probs=57.1
Q ss_pred CCCEEEEecCCc-cHHHHHHHHHCCCC-eEEEeeC-hhHH-hhccc------CCCCeEEeeCCCCCCCCccceeeehhhh
Q 023625 113 GLKSLVDVAGGT-GIMARAIATAFPDI-KCTVFDL-PHVV-DNLQG------TNDNLDFLGGNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~-~~a~~------~~~ri~~~~~d~~~~~~~~D~v~~~~vl 182 (279)
...+|.=||+|. |......+...+-. +.+++|. .+.+ ..+.. ...++.+..+|+ +...++|+|++..-.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~-~~~~~adivIitag~ 83 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDY-SDCKDADLVVITAGA 83 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 456899999876 55555444444443 6889997 3222 11111 113455555443 345679999885533
Q ss_pred ccCC---hh----HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWN---DE----ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~---~~----~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-.-+ .. ....+++++.+.++..+|+++++++.
T Consensus 84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2111 11 24566777666665444788888765
No 328
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=67.35 E-value=21 Score=31.60 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=64.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-------CCCCeEEeeCCCCC-CC--Cc-cceeee--
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-------TNDNLDFLGGNMFE-AI--PQ-ANAVLL-- 178 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~ri~~~~~d~~~-~~--~~-~D~v~~-- 178 (279)
+..+.+|++|+.+.....+++.|+-++--+++. .+.+..+.. .....++..+|++. +. .. ++++..
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 457899999999999999999999988888887 555555442 12234566666653 11 10 111111
Q ss_pred -----------------------hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC
Q 023625 179 -----------------------KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 221 (279)
Q Consensus 179 -----------------------~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~ 221 (279)
..+.-+|++. -.+.......++ |+|.+++.+.+...+.
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~~~~~~~~~~~--~~~f~~~~~~~~---~~~~v~~~e~~~~~p~ 320 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLTRDTITHWQDK--SALFRGRVATLK---PGGKVLILEYIRGLPE 320 (364)
T ss_pred chhhhhcccccCCCccccccccchhheeecccc--cHHHHhHhhccC---cCceEEehhhcCcCCc
Confidence 1112223322 345666677778 7999999888766544
No 329
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=67.27 E-value=20 Score=25.90 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=54.9
Q ss_pred CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCC---C---C-CC--ccceeeehhhhccCChhHHHH
Q 023625 123 GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMF---E---A-IP--QANAVLLKWILHNWNDEESVK 192 (279)
Q Consensus 123 G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~---~---~-~~--~~D~v~~~~vlh~~~~~~~~~ 192 (279)
|.|..+..+++... .++++.|. +.-.+.+++.... .+...+-. + . .+ ++|+++-.- +. ..
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~Ga~-~~~~~~~~~~~~~i~~~~~~~~~d~vid~~-----g~---~~ 70 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKELGAD-HVIDYSDDDFVEQIRELTGGRGVDVVIDCV-----GS---GD 70 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHTTES-EEEETTTSSHHHHHHHHTTTSSEEEEEESS-----SS---HH
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhhccc-ccccccccccccccccccccccceEEEEec-----Cc---HH
Confidence 45889999999987 89999998 6677777765311 12222111 1 1 12 488887642 21 25
Q ss_pred HHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 193 LLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 193 ~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.++...++++ |+|+++++....
T Consensus 71 ~~~~~~~~l~---~~G~~v~vg~~~ 92 (130)
T PF00107_consen 71 TLQEAIKLLR---PGGRIVVVGVYG 92 (130)
T ss_dssp HHHHHHHHEE---EEEEEEEESSTS
T ss_pred HHHHHHHHhc---cCCEEEEEEccC
Confidence 6888889999 799999987654
No 330
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=66.97 E-value=25 Score=30.31 Aligned_cols=98 Identities=16% Similarity=0.220 Sum_probs=56.3
Q ss_pred EEEecCCc-cHHHHHHHHHCCCC-eEEEeeC-hhHH-hhcc------cCC--CCeEEeeCCCCCCCCccceeeehhhhcc
Q 023625 117 LVDVAGGT-GIMARAIATAFPDI-KCTVFDL-PHVV-DNLQ------GTN--DNLDFLGGNMFEAIPQANAVLLKWILHN 184 (279)
Q Consensus 117 vlDvG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~-~~a~------~~~--~ri~~~~~d~~~~~~~~D~v~~~~vlh~ 184 (279)
|.=||+|. |......+-..+-+ ..+.+|. ++.. ..+. ... .++++..+|+ +...++|+|++..-.-.
T Consensus 2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y-~~~~~aDivvitaG~~~ 80 (307)
T cd05290 2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDY-DDCADADIIVITAGPSI 80 (307)
T ss_pred EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCH-HHhCCCCEEEECCCCCC
Confidence 55577765 55443333333333 5899997 3221 1111 111 2466666663 34567999988654321
Q ss_pred ---CCh------hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 185 ---WND------EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 185 ---~~~------~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.+. ....++++++.+.++..+|+|.++++..
T Consensus 81 kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 81 DPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 221 3456888888888876568898887653
No 331
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=66.56 E-value=11 Score=29.06 Aligned_cols=77 Identities=22% Similarity=0.236 Sum_probs=41.8
Q ss_pred EEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHH
Q 023625 117 LVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKL 193 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~ 193 (279)
|-=||. |..+..++++. .+..++++|+ ++..+...+. .+... .+..+-....|+|++.- -++++...+
T Consensus 4 Ig~IGl--G~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~--g~~~~-~s~~e~~~~~dvvi~~v----~~~~~v~~v 74 (163)
T PF03446_consen 4 IGFIGL--GNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA--GAEVA-DSPAEAAEQADVVILCV----PDDDAVEAV 74 (163)
T ss_dssp EEEE----SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT--TEEEE-SSHHHHHHHBSEEEE-S----SSHHHHHHH
T ss_pred EEEEch--HHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh--hhhhh-hhhhhHhhcccceEeec----ccchhhhhh
Confidence 334444 56666666654 3568999998 6666655543 12211 11111112468887742 144667788
Q ss_pred HHH--HHHhCC
Q 023625 194 LKK--CKEAIP 202 (279)
Q Consensus 194 L~~--~~~~L~ 202 (279)
+.. +...++
T Consensus 75 ~~~~~i~~~l~ 85 (163)
T PF03446_consen 75 LFGENILAGLR 85 (163)
T ss_dssp HHCTTHGGGS-
T ss_pred hhhhHHhhccc
Confidence 888 888888
No 332
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=66.11 E-value=14 Score=29.64 Aligned_cols=40 Identities=13% Similarity=0.119 Sum_probs=30.6
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ 153 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 153 (279)
.++..|||-=||+|..+.+..+. +-+++++|+ +..++.|+
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 56789999999999999988876 346999999 88777664
No 333
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=65.94 E-value=28 Score=33.14 Aligned_cols=85 Identities=14% Similarity=0.278 Sum_probs=53.7
Q ss_pred EEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhhhccC
Q 023625 116 SLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWILHNW 185 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~vlh~~ 185 (279)
+|+= ||.|.++..+++.. .+..++++|. ++.++.+++. ...+..||..++ ..++|+++..- +
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L~~agi~~A~~vv~~~--~-- 473 (601)
T PRK03659 402 QVII--VGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--GYKVYYGDATQLELLRAAGAEKAEAIVITC--N-- 473 (601)
T ss_pred CEEE--ecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--CCeEEEeeCCCHHHHHhcCCccCCEEEEEe--C--
Confidence 4544 45566666666543 3568999999 8888888764 577889998873 12578777632 1
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
++++...+...+++ +. |..+++.
T Consensus 474 d~~~n~~i~~~~r~-~~---p~~~Iia 496 (601)
T PRK03659 474 EPEDTMKIVELCQQ-HF---PHLHILA 496 (601)
T ss_pred CHHHHHHHHHHHHH-HC---CCCeEEE
Confidence 34445555555554 44 4666665
No 334
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=65.72 E-value=23 Score=30.15 Aligned_cols=81 Identities=19% Similarity=0.037 Sum_probs=51.6
Q ss_pred CEEEEecCC--ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEee-CCC-CCCCCccceeeehhhhccCChhH
Q 023625 115 KSLVDVAGG--TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLG-GNM-FEAIPQANAVLLKWILHNWNDEE 189 (279)
Q Consensus 115 ~~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~-~d~-~~~~~~~D~v~~~~vlh~~~~~~ 189 (279)
.+|+=+|.| -|.++..+.++.+...+++.|. ...++.+.+. .+.... .+. ......+|+|+++- |-..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~l--gv~d~~~~~~~~~~~~~aD~Vivav-----Pi~~ 76 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALEL--GVIDELTVAGLAEAAAEADLVIVAV-----PIEA 76 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhc--CcccccccchhhhhcccCCEEEEec-----cHHH
Confidence 355555544 3566666777777777888888 6666666643 222221 222 22445689999864 4456
Q ss_pred HHHHHHHHHHhCC
Q 023625 190 SVKLLKKCKEAIP 202 (279)
Q Consensus 190 ~~~~L~~~~~~L~ 202 (279)
...+|+++.+.|+
T Consensus 77 ~~~~l~~l~~~l~ 89 (279)
T COG0287 77 TEEVLKELAPHLK 89 (279)
T ss_pred HHHHHHHhcccCC
Confidence 7789999998888
No 335
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=65.39 E-value=49 Score=28.68 Aligned_cols=92 Identities=10% Similarity=0.062 Sum_probs=53.3
Q ss_pred CCCEEEEecC-CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEe--eCCCCC---CCCccceeeehhhhccC
Q 023625 113 GLKSLVDVAG-GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFL--GGNMFE---AIPQANAVLLKWILHNW 185 (279)
Q Consensus 113 ~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~--~~d~~~---~~~~~D~v~~~~vlh~~ 185 (279)
+..+|+=.|+ +.|.++..+++..-..++++.|. ++-.+.+++......+- ..++.+ ..+.+|+++-.-
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~----- 243 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVS----- 243 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECC-----
Confidence 4567776664 45667777777753336888887 77777777642211111 111111 112378776532
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.. ...+..+.++++ +||+++++..
T Consensus 244 G~---~~~~~~~~~~l~---~~G~iv~~G~ 267 (343)
T PRK09880 244 GH---PSSINTCLEVTR---AKGVMVQVGM 267 (343)
T ss_pred CC---HHHHHHHHHHhh---cCCEEEEEcc
Confidence 11 134667778888 7999998864
No 336
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.31 E-value=53 Score=26.77 Aligned_cols=92 Identities=14% Similarity=0.196 Sum_probs=54.1
Q ss_pred CCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC---CCCC-----CCCccceeeehhh
Q 023625 112 EGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG---NMFE-----AIPQANAVLLKWI 181 (279)
Q Consensus 112 ~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~---d~~~-----~~~~~D~v~~~~v 181 (279)
.+..+|+..|+|+ |..+..+++... .++++.+. +...+.++.... ..+... +... ...++|+++-..
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~- 209 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELAKELGA-DHVIDYKEEDLEEELRLTGGGGADVVIDAV- 209 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHHHHhCC-ceeccCCcCCHHHHHHHhcCCCCCEEEECC-
Confidence 5678999999885 777777887754 77888887 555555443211 111111 1100 112478887532
Q ss_pred hccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 182 LHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 182 lh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+.. ..+..+.+.|+ ++|+++.+...
T Consensus 210 ----~~~---~~~~~~~~~l~---~~G~~v~~~~~ 234 (271)
T cd05188 210 ----GGP---ETLAQALRLLR---PGGRIVVVGGT 234 (271)
T ss_pred ----CCH---HHHHHHHHhcc---cCCEEEEEccC
Confidence 221 34666777888 68998876643
No 337
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=64.64 E-value=22 Score=32.39 Aligned_cols=99 Identities=13% Similarity=0.105 Sum_probs=56.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCC--eEEEeeC-hhHHhhccc-CC-----CCeEEeeCCCCC---CCC---ccceeee
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDI--KCTVFDL-PHVVDNLQG-TN-----DNLDFLGGNMFE---AIP---QANAVLL 178 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~--~~~~~D~-~~~~~~a~~-~~-----~ri~~~~~d~~~---~~~---~~D~v~~ 178 (279)
...+.|+|.|.|.-.-++....+.. .++.+|. -.+...... .. ..+.....-++. |.+ +||++++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 4568888877666555555555543 4778887 444443321 10 111111112222 322 4999999
Q ss_pred hhhhccCChh-HHHHHHHHHH-HhCCCCCCCcEEEEEee
Q 023625 179 KWILHNWNDE-ESVKLLKKCK-EAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 179 ~~vlh~~~~~-~~~~~L~~~~-~~L~~~~pgG~lli~e~ 215 (279)
.+.||.+... ....+.++.. ++.+ +|+.++++|.
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r---~g~~lViIe~ 316 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDR---SGYFLVIIEK 316 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccC---CCceEEEEec
Confidence 9999987654 3334444444 4446 7999999985
No 338
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=63.46 E-value=38 Score=28.98 Aligned_cols=85 Identities=15% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCEEEEec-CCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCC-CccceeeehhhhccCChhHH
Q 023625 114 LKSLVDVA-GGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAI-PQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 114 ~~~vlDvG-~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~-~~~D~v~~~~vlh~~~~~~~ 190 (279)
..+++=+| |+.|.++..+++...-..++++|. +.-++.+... . + .|..+.. .++|+|+-.- ..
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-~---~--i~~~~~~~~g~Dvvid~~-----G~--- 210 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-E---V--LDPEKDPRRDYRAIYDAS-----GD--- 210 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-c---c--cChhhccCCCCCEEEECC-----CC---
Confidence 45677677 556778888888765434666776 5555554432 1 1 1111111 2478877532 11
Q ss_pred HHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 191 VKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 191 ~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
...+..+.+.++ ++|+++++-.
T Consensus 211 ~~~~~~~~~~l~---~~G~iv~~G~ 232 (308)
T TIGR01202 211 PSLIDTLVRRLA---KGGEIVLAGF 232 (308)
T ss_pred HHHHHHHHHhhh---cCcEEEEEee
Confidence 235677778899 7999998764
No 339
>PF14740 DUF4471: Domain of unknown function (DUF4471)
Probab=63.45 E-value=5.2 Score=34.07 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=46.4
Q ss_pred CCeEEeeCCCCCCCC-------ccceeeeh-hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee--cCCCCCCchh
Q 023625 157 DNLDFLGGNMFEAIP-------QANAVLLK-WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA--IENQSQDKES 226 (279)
Q Consensus 157 ~ri~~~~~d~~~~~~-------~~D~v~~~-~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~--~~~~~~~~~~ 226 (279)
-+|.|++.|....++ -||+++++ +..|.+.++ +.++++ |++ ++|+|.. +-+...+
T Consensus 200 vkVhFLPld~~~~L~~K~ky~~~Fd~ifvs~s~vh~L~p~--------l~~~~a---~~A-~LvvEtaKfmvdLrKE--- 264 (289)
T PF14740_consen 200 VKVHFLPLDSLEKLPHKSKYQNFFDLIFVSCSMVHFLKPE--------LFQALA---PDA-VLVVETAKFMVDLRKE--- 264 (289)
T ss_pred cEEEEeCchHHHHHhhHHhhcCCCCEEEEhhhhHhhcchH--------HHHHhC---CCC-EEEEEcchhheeCCHH---
Confidence 467888887765332 28988765 477777775 455678 565 5555642 1111111
Q ss_pred hhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeE
Q 023625 227 METQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 227 ~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~ 264 (279)
...--.+.+.+|+++|||+...
T Consensus 265 ----------------q~~~F~~kv~eLA~~aG~~p~~ 286 (289)
T PF14740_consen 265 ----------------QLQEFVKKVKELAKAAGFKPVT 286 (289)
T ss_pred ----------------HHHHHHHHHHHHHHHCCCcccc
Confidence 0001346788999999998654
No 340
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=62.87 E-value=39 Score=29.04 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=51.7
Q ss_pred EEEEecCCc-cHHHHHHHHHCCC-CeEEEeeC-hhHHhh-cccC-------CCCeEEeeCCCCCCCCccceeeehhhhcc
Q 023625 116 SLVDVAGGT-GIMARAIATAFPD-IKCTVFDL-PHVVDN-LQGT-------NDNLDFLGGNMFEAIPQANAVLLKWILHN 184 (279)
Q Consensus 116 ~vlDvG~G~-G~~~~~l~~~~p~-~~~~~~D~-~~~~~~-a~~~-------~~ri~~~~~d~~~~~~~~D~v~~~~vlh~ 184 (279)
+|.=||+|. |......+....- -+++++|. ++..+. +... ...+.+..++. +...++|+|+...-.-.
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~~ 80 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAPQ 80 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCCC
Confidence 577788765 3333333333232 36899997 433221 2211 12334444433 23457999988543311
Q ss_pred CC---h----hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WN---D----EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~---~----~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-+ . ....++++++.+.++..+|.+.++++.
T Consensus 81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs 117 (306)
T cd05291 81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS 117 (306)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 11 1 124566777777776555789888765
No 341
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=62.54 E-value=66 Score=27.46 Aligned_cols=91 Identities=12% Similarity=0.149 Sum_probs=53.8
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC---CC----C--CCCccceeeeh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN---MF----E--AIPQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d---~~----~--~~~~~D~v~~~ 179 (279)
+....+||..|+| .|..+..+++.. +.++++.+. +...+.+++.. ++.+..+ .. . +..++|+++-.
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~D~vid~ 239 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKELG--ADEVLNSLDDSPKDKKAAGLGGGFDVIFDF 239 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhC--CCEEEcCCCcCHHHHHHHhcCCCceEEEEC
Confidence 4556788888765 488888888876 467788876 65555554321 1111111 00 0 11247877643
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.- . ...++.+.+.|+ ++|+++.+..
T Consensus 240 ~g-----~---~~~~~~~~~~l~---~~G~~v~~g~ 264 (338)
T cd08254 240 VG-----T---QPTFEDAQKAVK---PGGRIVVVGL 264 (338)
T ss_pred CC-----C---HHHHHHHHHHhh---cCCEEEEECC
Confidence 11 1 135777888899 7999887643
No 342
>PF08845 SymE_toxin: Toxin SymE, type I toxin-antitoxin system; InterPro: IPR014944 This entry represents a SOS-induced gene whose product shows homology to the antitoxin MazE (SymE), the coding region contains a cis-encoded antisense RNA. The small antisense RNA and the gene have the all the hallmarks of a toxin-antitoxin module. The synthesis of the SymE is tightly repressed at multiple levels; at the transcriptional level by the LexA repressor, at the level of mRNA stability and translation by the SymR RNA and at the level of protein stability by the Lon protease. SymE co-purifies with ribosomes and overproduction of the protein leads to cell growth inhibition, decreased protein synthesis and increased RNA degradation. These properties are shared with several RNA endonuclease toxins of toxin-antitoxin modules. It seems probable that the SymE protein represents an evolutionary derivative of a toxin containing the AbrB fold, whose representatives are typically antitoxins. The SymE promoted cleavage of RNA cleavage may be important for the recycling of RNAs damaged under SOS-inducing conditions []. ; GO: 0003723 RNA binding, 0016788 hydrolase activity, acting on ester bonds, 0016070 RNA metabolic process, 0005737 cytoplasm
Probab=62.46 E-value=5.7 Score=24.81 Aligned_cols=17 Identities=24% Similarity=0.192 Sum_probs=12.3
Q ss_pred HHHHHCCCceeEEEecC
Q 023625 253 KLFLAAGFSHYKITPML 269 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~~ 269 (279)
+||+++||.+-+-..+.
T Consensus 31 ~WL~~aGF~~G~~v~V~ 47 (57)
T PF08845_consen 31 KWLEEAGFTIGDPVKVR 47 (57)
T ss_pred hhhHHhCCCCCCEEEEE
Confidence 57899999866555544
No 343
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=61.09 E-value=17 Score=28.12 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=51.8
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHH
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
.++|.=||.|+=..+.++.-+-.++.+++-.. ....+.|++. ..+. .++.+....+|+|++. .||+...
T Consensus 4 ~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~--Gf~v--~~~~eAv~~aDvV~~L-----~PD~~q~ 74 (165)
T PF07991_consen 4 GKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKAD--GFEV--MSVAEAVKKADVVMLL-----LPDEVQP 74 (165)
T ss_dssp TSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHT--T-EC--CEHHHHHHC-SEEEE------S-HHHHH
T ss_pred CCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHC--CCee--ccHHHHHhhCCEEEEe-----CChHHHH
Confidence 57899999887766666666667788877766 3366666653 2222 1222222358888872 5777667
Q ss_pred HHH-HHHHHhCCCCCCCcEEEEEe
Q 023625 192 KLL-KKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 192 ~~L-~~~~~~L~~~~pgG~lli~e 214 (279)
++. +.+...|+ ||-.|++..
T Consensus 75 ~vy~~~I~p~l~---~G~~L~fah 95 (165)
T PF07991_consen 75 EVYEEEIAPNLK---PGATLVFAH 95 (165)
T ss_dssp HHHHHHHHHHS----TT-EEEESS
T ss_pred HHHHHHHHhhCC---CCCEEEeCC
Confidence 777 88999999 566555543
No 344
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=60.63 E-value=7.4 Score=26.70 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=38.8
Q ss_pred CccHHHHHHHHHC-----CCCeEE-EeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHH
Q 023625 123 GTGIMARAIATAF-----PDIKCT-VFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLK 195 (279)
Q Consensus 123 G~G~~~~~l~~~~-----p~~~~~-~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~ 195 (279)
|.|..+.++++.. +..++. +.+. ++..+..... -.+.+...+..+-...+|+|++. .+++....+++
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~advvila-----v~p~~~~~v~~ 79 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKE-YGVQATADDNEEAAQEADVVILA-----VKPQQLPEVLS 79 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHH-CTTEEESEEHHHHHHHTSEEEE------S-GGGHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHh-hccccccCChHHhhccCCEEEEE-----ECHHHHHHHHH
Confidence 5556665555542 224666 4377 6655554332 12444433322222358999885 46777888888
Q ss_pred HHHHhCC
Q 023625 196 KCKEAIP 202 (279)
Q Consensus 196 ~~~~~L~ 202 (279)
.+ ..+.
T Consensus 80 ~i-~~~~ 85 (96)
T PF03807_consen 80 EI-PHLL 85 (96)
T ss_dssp HH-HHHH
T ss_pred HH-hhcc
Confidence 88 4444
No 345
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=60.52 E-value=15 Score=28.84 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=30.7
Q ss_pred ccceeeehhhhccCCh----------hHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 172 QANAVLLKWILHNWND----------EESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~----------~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
..|+|++.++||+++- +...++++++.++|+ |+. ++|.....|
T Consensus 50 ~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp---~~a-llIW~tt~P 102 (183)
T cd01842 50 RLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLP---IEC-LIVWNTAMP 102 (183)
T ss_pred ceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCC---Ccc-EEEEecCCC
Confidence 3699999999999865 355677888888888 465 444444444
No 346
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=60.26 E-value=1e+02 Score=25.81 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=51.7
Q ss_pred CCCEEEEecC-CccHHHHHHHHHCCCCe-EEEeeC-hhHHhhcccCCCCeEEeeCCCCC------CCCccceeeehhhhc
Q 023625 113 GLKSLVDVAG-GTGIMARAIATAFPDIK-CTVFDL-PHVVDNLQGTNDNLDFLGGNMFE------AIPQANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~-G~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~------~~~~~D~v~~~~vlh 183 (279)
+..+||=+|+ +.|..+..+++.. +++ +++.|. +.-.+.+++......+-..+..+ .-.++|+++-.-
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~--- 195 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAA-GAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFS--- 195 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECC---
Confidence 4567777775 4556666777765 444 777886 66666666542211111111100 011477776421
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
.. ...++.+.+.++ |+|+++++...
T Consensus 196 --G~---~~~~~~~~~~l~---~~G~iv~~G~~ 220 (280)
T TIGR03366 196 --GA---TAAVRACLESLD---VGGTAVLAGSV 220 (280)
T ss_pred --CC---hHHHHHHHHHhc---CCCEEEEeccC
Confidence 11 234667778888 79999988754
No 347
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=60.16 E-value=79 Score=24.48 Aligned_cols=93 Identities=14% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCC--CC-----ccceeeehhhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEA--IP-----QANAVLLKWILHN 184 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~--~~-----~~D~v~~~~vlh~ 184 (279)
.+..+|+-|||=+-.....- ...++.++.++|...--+. ..+. .|+--|+.+| +| .+|+|++-=.+
T Consensus 24 ~~~~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF~~---~~~~-~F~fyD~~~p~~~~~~l~~~~d~vv~DPPF-- 96 (162)
T PF10237_consen 24 LDDTRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRFEQ---FGGD-EFVFYDYNEPEELPEELKGKFDVVVIDPPF-- 96 (162)
T ss_pred CCCCEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchHHh---cCCc-ceEECCCCChhhhhhhcCCCceEEEECCCC--
Confidence 45689999998776665433 2567788999998544333 1233 6677777664 33 48988874333
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
++++=..+..+-++..++ ++++++++.
T Consensus 97 l~~ec~~k~a~ti~~L~k---~~~kii~~T 123 (162)
T PF10237_consen 97 LSEECLTKTAETIRLLLK---PGGKIILCT 123 (162)
T ss_pred CCHHHHHHHHHHHHHHhC---ccceEEEec
Confidence 344322344444444446 678887754
No 348
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=59.86 E-value=82 Score=26.30 Aligned_cols=98 Identities=7% Similarity=0.113 Sum_probs=58.7
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHC-CCCeEEEeeC-----hhHHhhcccCCCCeEEeeCCCCCCCC------ccceeee
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAF-PDIKCTVFDL-----PHVVDNLQGTNDNLDFLGGNMFEAIP------QANAVLL 178 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-----~~~~~~a~~~~~ri~~~~~d~~~~~~------~~D~v~~ 178 (279)
+++..+||-+|.++|....++...- |+--+..++. -..+..|++. .+|--+.-|...|.. -.|+|+.
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-tNiiPIiEDArhP~KYRmlVgmVDvIFa 232 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-TNIIPIIEDARHPAKYRMLVGMVDVIFA 232 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-CCceeeeccCCCchheeeeeeeEEEEec
Confidence 5788999999999999877666543 3333444432 1223334433 455555556655532 3677665
Q ss_pred hhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 179 KWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 179 ~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
.+- .++++..+.-|+..-|+ +||.++|.=..
T Consensus 233 -Dva---qpdq~RivaLNA~~FLk---~gGhfvisika 263 (317)
T KOG1596|consen 233 -DVA---QPDQARIVALNAQYFLK---NGGHFVISIKA 263 (317)
T ss_pred -cCC---Cchhhhhhhhhhhhhhc---cCCeEEEEEec
Confidence 222 23345555567788899 68888775443
No 349
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=59.85 E-value=51 Score=29.50 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=53.0
Q ss_pred CEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-CCCeEEeeCCCCCC------CCccceeeehhhhccC
Q 023625 115 KSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-NDNLDFLGGNMFEA------IPQANAVLLKWILHNW 185 (279)
Q Consensus 115 ~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~~------~~~~D~v~~~~vlh~~ 185 (279)
.+||=+||| -|......+.+....++++.|. +.-++++... ..+++....|..+. +.++|+|+..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~----- 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA----- 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC-----
Confidence 468888873 4555555555555578999999 6777777543 45899999999873 23578887643
Q ss_pred ChhHHHHHHHHHHH
Q 023625 186 NDEESVKLLKKCKE 199 (279)
Q Consensus 186 ~~~~~~~~L~~~~~ 199 (279)
+.....++++.+.+
T Consensus 77 p~~~~~~i~ka~i~ 90 (389)
T COG1748 77 PPFVDLTILKACIK 90 (389)
T ss_pred CchhhHHHHHHHHH
Confidence 33333466666654
No 350
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=59.65 E-value=9.1 Score=32.96 Aligned_cols=31 Identities=32% Similarity=0.486 Sum_probs=25.7
Q ss_pred CEEEEecCCc--cHHHHHHHHHCCCCeEEEeeC
Q 023625 115 KSLVDVAGGT--GIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 115 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~ 145 (279)
.+|+.||.|. |-...-++.++|++.++++|.
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~ 34 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDI 34 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEec
Confidence 4688888874 667777888999999999997
No 351
>PTZ00117 malate dehydrogenase; Provisional
Probab=58.26 E-value=96 Score=26.87 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=51.8
Q ss_pred CCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcc--------c-CCCCeEEee-CCCCCCCCccceeeehhh
Q 023625 114 LKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQ--------G-TNDNLDFLG-GNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 114 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------~-~~~ri~~~~-~d~~~~~~~~D~v~~~~v 181 (279)
..+|.=||+|+ |.....++....-..++++|+ ++..+ +. . ......+.. .|+. ...++|+|+...-
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVitag 82 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITAG 82 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECCC
Confidence 45899999988 776666555544357889998 32221 21 1 112234443 3433 4567899988652
Q ss_pred h---ccCChhH----HHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 L---HNWNDEE----SVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 l---h~~~~~~----~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
. ..++..+ ...+++++.+.+....|.+.++++.
T Consensus 83 ~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs 122 (319)
T PTZ00117 83 VQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT 122 (319)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 1111111 1134444444443222578666653
No 352
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=57.98 E-value=11 Score=34.32 Aligned_cols=130 Identities=17% Similarity=0.228 Sum_probs=79.6
Q ss_pred chHHHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----
Q 023625 82 PKFKSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT----- 155 (279)
Q Consensus 82 ~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----- 155 (279)
++.+..++..|.+.-.+.....-. .......++-||-|.|.+..-+....|..+.+++.+ |.+++.|...
T Consensus 268 ~~l~s~~h~~m~~g~aL~~n~~~~----~~~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q 343 (482)
T KOG2352|consen 268 PELASQYHQMMIGGLALIMNRPPQ----KLDTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ 343 (482)
T ss_pred cccCcchhhhhhccceeccccCch----hccccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh
Confidence 445556666666544433221111 123456788888888999998998999888888888 9999988741
Q ss_pred CCCeEEeeCCCCCC----------CCccceeee----hhhhccCC---hh-HHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 156 NDNLDFLGGNMFEA----------IPQANAVLL----KWILHNWN---DE-ESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 156 ~~ri~~~~~d~~~~----------~~~~D~v~~----~~vlh~~~---~~-~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.+|..++-.|-... ...+|+++. .. -|... .. -+..+|..++.+++ |.|.+ ++..+.
T Consensus 344 ~~r~~V~i~dGl~~~~~~~k~~~~~~~~dvl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~---p~g~f-~inlv~ 418 (482)
T KOG2352|consen 344 SDRNKVHIADGLDFLQRTAKSQQEDICPDVLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILP---PRGMF-IINLVT 418 (482)
T ss_pred hhhhhhhHhhchHHHHHHhhccccccCCcEEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccC---ccceE-EEEEec
Confidence 23444444443320 123787765 22 33332 21 34578999999999 67865 455554
Q ss_pred CCC
Q 023625 218 ENQ 220 (279)
Q Consensus 218 ~~~ 220 (279)
.+.
T Consensus 419 r~~ 421 (482)
T KOG2352|consen 419 RNS 421 (482)
T ss_pred CCc
Confidence 443
No 353
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=57.89 E-value=53 Score=30.95 Aligned_cols=81 Identities=19% Similarity=0.208 Sum_probs=50.1
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhhhccCChhHHH
Q 023625 122 GGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 122 ~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
||.|.++..+++.. .+..++++|. ++.++.+++ .....+.||..++ ..++|.++..- . +|++..
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~--~--~~~~~~ 496 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--RGIRAVLGNAANEEIMQLAHLDCARWLLLTI--P--NGYEAG 496 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--CCCeEEEcCCCCHHHHHhcCccccCEEEEEc--C--ChHHHH
Confidence 56667777777754 3467999998 777777775 4688999999874 12578665421 1 233333
Q ss_pred HHHHHHHHhCCCCCCCcEEEE
Q 023625 192 KLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli 212 (279)
.+...+ +... |+.+++.
T Consensus 497 ~iv~~~-~~~~---~~~~iia 513 (558)
T PRK10669 497 EIVASA-REKR---PDIEIIA 513 (558)
T ss_pred HHHHHH-HHHC---CCCeEEE
Confidence 444444 4445 4666654
No 354
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=57.73 E-value=29 Score=29.85 Aligned_cols=94 Identities=10% Similarity=0.089 Sum_probs=48.9
Q ss_pred ecCCc-cHHHHHHHHHCCCC-eEEEeeC-hhHH-hhccc-------CCCCeEEeeCCCCCCCCccceeeehhhhccCC--
Q 023625 120 VAGGT-GIMARAIATAFPDI-KCTVFDL-PHVV-DNLQG-------TNDNLDFLGGNMFEAIPQANAVLLKWILHNWN-- 186 (279)
Q Consensus 120 vG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~-~~a~~-------~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~-- 186 (279)
||+|. |......+...+-. +.+++|. .+.. ..+.. ...++.+..+|+ +...++|+|++..-.-.-+
T Consensus 2 IGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~-~~~~daDivVitag~~rk~g~ 80 (299)
T TIGR01771 2 IGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDY-SDCKDADLVVITAGAPQKPGE 80 (299)
T ss_pred CCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCH-HHHCCCCEEEECCCCCCCCCC
Confidence 45554 55444444444433 5888997 3221 11111 123455554442 3455789998855432111
Q ss_pred -hh----HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 187 -DE----ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 187 -~~----~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. ...++++++.+.++..+|.|+++++.
T Consensus 81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 113 (299)
T TIGR01771 81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT 113 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 11 23456666666665444789988876
No 355
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=56.74 E-value=46 Score=28.44 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=38.9
Q ss_pred EEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCC---CccceeeehhhhccCChhHH
Q 023625 117 LVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAI---PQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~---~~~D~v~~~~vlh~~~~~~~ 190 (279)
|-=||+ |..+..+++.. .+.+++++|. ++..+..+.. .... ..+..+-. ...|+|++.-. +++..
T Consensus 3 Ig~IGl--G~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~--g~~~-~~s~~~~~~~~~~advVi~~vp----~~~~~ 73 (299)
T PRK12490 3 LGLIGL--GKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKL--GITA-RHSLEELVSKLEAPRTIWVMVP----AGEVT 73 (299)
T ss_pred EEEEcc--cHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHC--CCee-cCCHHHHHHhCCCCCEEEEEec----CchHH
Confidence 344554 44444444432 3457888998 5555554432 1111 11111101 12577766321 23366
Q ss_pred HHHHHHHHHhCC
Q 023625 191 VKLLKKCKEAIP 202 (279)
Q Consensus 191 ~~~L~~~~~~L~ 202 (279)
..++..+...++
T Consensus 74 ~~v~~~i~~~l~ 85 (299)
T PRK12490 74 ESVIKDLYPLLS 85 (299)
T ss_pred HHHHHHHhccCC
Confidence 778888888887
No 356
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=56.65 E-value=51 Score=28.40 Aligned_cols=99 Identities=8% Similarity=0.076 Sum_probs=49.7
Q ss_pred CEEEEecCCc-cHHHHHHHHHCCCCeEEEeeChhHHhhccc-----------CCCCeEEeeCCCCCCCCccceeeehhhh
Q 023625 115 KSLVDVAGGT-GIMARAIATAFPDIKCTVFDLPHVVDNLQG-----------TNDNLDFLGGNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 115 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~-----------~~~ri~~~~~d~~~~~~~~D~v~~~~vl 182 (279)
.+|.=||+|. |......+......+++++|..+.+..++. ...++.+ ..|+. +..++|+|++..-.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~-t~d~~-~~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG-TNNYA-DTANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe-cCCHH-HhCCCCEEEEcCCC
Confidence 3677888876 444443333332237999998332333221 1123322 34543 34568999875432
Q ss_pred ccCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 183 HNWND-------EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 183 h~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
-.-++ ....++++++.+.++++.|++.++++..
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 11111 1234556655555543335787777653
No 357
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=55.75 E-value=1e+02 Score=26.51 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=49.8
Q ss_pred CCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hh-HHhhcccCCCCeEEeeC-CCCCCCCccceeeehhhhccCChh
Q 023625 113 GLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PH-VVDNLQGTNDNLDFLGG-NMFEAIPQANAVLLKWILHNWNDE 188 (279)
Q Consensus 113 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~-~~~~a~~~~~ri~~~~~-d~~~~~~~~D~v~~~~vlh~~~~~ 188 (279)
...+|+-+|+|. |......+......++++.|. ++ ..+.+++... ..... |..+....+|+|+..-.--
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l~~aDvVi~at~~~----- 249 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--NAVPLDELLELLNEADVVISATGAP----- 249 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC--eEEeHHHHHHHHhcCCEEEECCCCC-----
Confidence 568899998743 333333333322346888887 43 3344554422 22221 2222234689998864321
Q ss_pred HHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC
Q 023625 189 ESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS 221 (279)
Q Consensus 189 ~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~ 221 (279)
....++..+.+..+ ++..+++|...|.+.
T Consensus 250 ~~~~~~~~~~~~~~----~~~~~viDlavPrdi 278 (311)
T cd05213 250 HYAKIVERAMKKRS----GKPRLIVDLAVPRDI 278 (311)
T ss_pred chHHHHHHHHhhCC----CCCeEEEEeCCCCCC
Confidence 11233444333322 455777888776653
No 358
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=54.85 E-value=55 Score=31.39 Aligned_cols=86 Identities=16% Similarity=0.255 Sum_probs=52.1
Q ss_pred CEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeehhhhcc
Q 023625 115 KSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLKWILHN 184 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~~vlh~ 184 (279)
.+|+=+|+| .++..+++.. .+..++++|. ++.++.+++. ...+..||..++ ...+|+++..- .
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--g~~v~~GDat~~~~L~~agi~~A~~vvv~~--~- 473 (621)
T PRK03562 401 PRVIIAGFG--RFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--GMKVFYGDATRMDLLESAGAAKAEVLINAI--D- 473 (621)
T ss_pred CcEEEEecC--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe--C-
Confidence 466666654 4444444322 3567999998 7778877753 577889998774 12478777642 1
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+++....+...+++ +. |+-++++
T Consensus 474 -d~~~n~~i~~~ar~-~~---p~~~iia 496 (621)
T PRK03562 474 -DPQTSLQLVELVKE-HF---PHLQIIA 496 (621)
T ss_pred -CHHHHHHHHHHHHH-hC---CCCeEEE
Confidence 34455555555554 44 4556554
No 359
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=54.74 E-value=18 Score=27.33 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=19.8
Q ss_pred EecCCcc--HHHHHHH--HHCCCCeEEEeeC-hhHHh
Q 023625 119 DVAGGTG--IMARAIA--TAFPDIKCTVFDL-PHVVD 150 (279)
Q Consensus 119 DvG~G~G--~~~~~l~--~~~p~~~~~~~D~-~~~~~ 150 (279)
|||+..| .....+. ...|..+++.++. |...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence 8999999 6655554 4568889999998 66544
No 360
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=54.62 E-value=16 Score=33.40 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=51.1
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEE------EeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccC
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCT------VFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNW 185 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~------~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~ 185 (279)
..++|+=||||+=..+.++--+-.++.++ ++|. ....+.|.. +.+ ...+..+..+.+|+|++. .
T Consensus 35 kgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~--dGF--~v~~~~Ea~~~ADvVviL-----l 105 (487)
T PRK05225 35 KGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE--NGF--KVGTYEELIPQADLVINL-----T 105 (487)
T ss_pred CCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh--cCC--ccCCHHHHHHhCCEEEEc-----C
Confidence 35899999998754444433333334444 2222 223333322 222 223322235679999874 3
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
||.....+-+++.+.|+ ||..|.+..
T Consensus 106 PDt~q~~v~~~i~p~LK---~Ga~L~fsH 131 (487)
T PRK05225 106 PDKQHSDVVRAVQPLMK---QGAALGYSH 131 (487)
T ss_pred ChHHHHHHHHHHHhhCC---CCCEEEecC
Confidence 66655677799999999 677776654
No 361
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=53.74 E-value=1.2e+02 Score=26.35 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=31.8
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGT 155 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~ 155 (279)
..+..+|+=.|+|. |..+..+++.. +.++++.|. ++-.+.+++.
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~~ 209 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKGF 209 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHHh
Confidence 45567888888755 77778888876 457888887 6666666654
No 362
>PRK06545 prephenate dehydrogenase; Validated
Probab=53.55 E-value=69 Score=28.25 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=19.8
Q ss_pred CccceeeehhhhccCChhHHHHHHHHHHH-hCC
Q 023625 171 PQANAVLLKWILHNWNDEESVKLLKKCKE-AIP 202 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~~~~~~~L~~~~~-~L~ 202 (279)
..+|+|++.- +++....+++++.+ .++
T Consensus 59 ~~aDlVilav-----P~~~~~~vl~~l~~~~l~ 86 (359)
T PRK06545 59 AEADLIVLAV-----PVDATAALLAELADLELK 86 (359)
T ss_pred cCCCEEEEeC-----CHHHHHHHHHHHhhcCCC
Confidence 4589998853 55667788888887 377
No 363
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=53.17 E-value=1.5e+02 Score=25.89 Aligned_cols=94 Identities=18% Similarity=0.107 Sum_probs=53.2
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCe--EEeeCCCCCC----C--Cccceeeehh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNL--DFLGGNMFEA----I--PQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri--~~~~~d~~~~----~--~~~D~v~~~~ 180 (279)
..+..+||=.|+| .|..+..+++...-.++++.|. +.-.+.+++..... .....|..+. . .++|+++-.-
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~ 253 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECC
Confidence 4456788777753 4667777788764335888887 66666665542211 1111121110 1 1478776421
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
..+ ..+....++++ +||+++++..
T Consensus 254 -----g~~---~~~~~~~~~~~---~~G~iv~~G~ 277 (358)
T TIGR03451 254 -----GRP---ETYKQAFYARD---LAGTVVLVGV 277 (358)
T ss_pred -----CCH---HHHHHHHHHhc---cCCEEEEECC
Confidence 111 34566677888 7999988764
No 364
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=52.87 E-value=53 Score=30.59 Aligned_cols=91 Identities=13% Similarity=0.256 Sum_probs=54.8
Q ss_pred CCCEEEEecCCcc-HHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC----------------------
Q 023625 113 GLKSLVDVAGGTG-IMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---------------------- 168 (279)
Q Consensus 113 ~~~~vlDvG~G~G-~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---------------------- 168 (279)
+..+++=+|+|.= ..+..+++.. +.+++++|. +...+.++... .+++.-|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~l-GA~V~v~d~~~~rle~a~~lG--a~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~ 239 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSL-GAIVRAFDTRPEVKEQVQSMG--AEFLELDFKEEGGSGDGYAKVMSEEFIAAEME 239 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHcC--CeEEeccccccccccccceeecCHHHHHHHHH
Confidence 3579999998764 5556666654 467999998 77777777542 2222222210
Q ss_pred ----CCCccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 169 ----AIPQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 169 ----~~~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
...++|+++..-.+..-+.+ .-+.++..+.|| ||+.++
T Consensus 240 ~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MK---pGsvIV 281 (511)
T TIGR00561 240 LFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMK---AGSVIV 281 (511)
T ss_pred HHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCC---CCCEEE
Confidence 01358999765544332221 235777788899 687543
No 365
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=52.63 E-value=1e+02 Score=28.46 Aligned_cols=100 Identities=15% Similarity=0.166 Sum_probs=56.4
Q ss_pred EEEEecCCccHHHHH--HHHHCCCCeEEEeeC-hhHHhhcccCC----------------C-CeEEeeCCCCCCCCccce
Q 023625 116 SLVDVAGGTGIMARA--IATAFPDIKCTVFDL-PHVVDNLQGTN----------------D-NLDFLGGNMFEAIPQANA 175 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~--l~~~~p~~~~~~~D~-~~~~~~a~~~~----------------~-ri~~~~~d~~~~~~~~D~ 175 (279)
+|.=+|.|...+..+ |+++.++.+++++|. ++.++..+... . ++.+ ..|+.+....+|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~-t~~~~~~i~~adv 81 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF-STDVEKHVAEADI 81 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE-EcCHHHHHhcCCE
Confidence 567778777665554 334344678999998 77676644210 0 1111 1112112345788
Q ss_pred eeehh--hhc--------cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCC
Q 023625 176 VLLKW--ILH--------NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQ 220 (279)
Q Consensus 176 v~~~~--vlh--------~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~ 220 (279)
|+++= ..- ...-.....+.+.+.+.++ .|.++|.+...+..
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~----~~~lVv~~STvp~G 132 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSK----SDKIVVEKSTVPVK 132 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCC----CCcEEEEeCCCCCC
Confidence 87742 110 1112256688888888888 46778877665543
No 366
>PRK07680 late competence protein ComER; Validated
Probab=52.55 E-value=71 Score=26.82 Aligned_cols=81 Identities=14% Similarity=0.161 Sum_probs=43.8
Q ss_pred EEEEecCCc--cHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHH
Q 023625 116 SLVDVAGGT--GIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
+|.=||+|. +.++..|.+.. +...+++.|. ++..+...+....+... .|..+-...+|+|++.- ++.+.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~-~~~~~~~~~aDiVilav-----~p~~~ 75 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVA-KTIEEVISQSDLIFICV-----KPLDI 75 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEE-CCHHHHHHhCCEEEEec-----CHHHH
Confidence 355677655 33444444432 1125788887 44444333211123322 22211123589887743 67777
Q ss_pred HHHHHHHHHhCC
Q 023625 191 VKLLKKCKEAIP 202 (279)
Q Consensus 191 ~~~L~~~~~~L~ 202 (279)
..+++.+...++
T Consensus 76 ~~vl~~l~~~l~ 87 (273)
T PRK07680 76 YPLLQKLAPHLT 87 (273)
T ss_pred HHHHHHHHhhcC
Confidence 888999888887
No 367
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=52.44 E-value=4.9 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=19.7
Q ss_pred CccccccCceeecCCCeEecChhcc-hh
Q 023625 1 MRILVHSGFFAQQKDDEYFLTPASR-LL 27 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~~~y~~t~~s~-~L 27 (279)
|..|...|+++..+ +.|.+|+.|. +|
T Consensus 40 L~~L~~~gLI~~~~-~~Y~lTekG~~~l 66 (77)
T PF14947_consen 40 LKELEEKGLIKKKD-GKYRLTEKGKEFL 66 (77)
T ss_dssp HHHHHHTTSEEEET-TEEEE-HHHHHHH
T ss_pred HHHHHHCcCeeCCC-CEEEECccHHHHH
Confidence 35688899998755 5999999997 44
No 368
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=52.28 E-value=87 Score=27.14 Aligned_cols=60 Identities=15% Similarity=0.395 Sum_probs=38.6
Q ss_pred EEEEecCCccHHHHHHHHHC---CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC---C----Cccceee
Q 023625 116 SLVDVAGGTGIMARAIATAF---PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA---I----PQANAVL 177 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~---~----~~~D~v~ 177 (279)
+|| |=||+|..+..|++++ .+.+++++|. ......... ..+++++.+|+.++ . .++|+|+
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVN-HPRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhcc-CCCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 455 5578899999988875 3467888887 322222212 24699999999732 1 2478776
No 369
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=52.03 E-value=76 Score=26.80 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=45.1
Q ss_pred EEEEecCCc--cHHHHHHHHHC--CCCeEEEeeC-hhHHhhccc-CCCCeEEeeCCCCCCCCccceeeehhhhccCChhH
Q 023625 116 SLVDVAGGT--GIMARAIATAF--PDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEE 189 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~ 189 (279)
+|.=||||. +.++..|++.. +..++++.|. ++.++.+.+ . .++. ..|..+....+|+|++. .+|++
T Consensus 4 ~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~--g~~~-~~~~~e~~~~aDiIiLa-----vkP~~ 75 (272)
T PRK12491 4 QIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKY--GITI-TTNNNEVANSADILILS-----IKPDL 75 (272)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhc--CcEE-eCCcHHHHhhCCEEEEE-----eChHH
Confidence 566777664 22333333332 2346888897 555554432 2 2322 12222122358998874 35677
Q ss_pred HHHHHHHHHHhCC
Q 023625 190 SVKLLKKCKEAIP 202 (279)
Q Consensus 190 ~~~~L~~~~~~L~ 202 (279)
...+++.+...++
T Consensus 76 ~~~vl~~l~~~~~ 88 (272)
T PRK12491 76 YSSVINQIKDQIK 88 (272)
T ss_pred HHHHHHHHHHhhc
Confidence 8889999988887
No 370
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=52.02 E-value=1.6e+02 Score=25.87 Aligned_cols=96 Identities=10% Similarity=0.125 Sum_probs=55.7
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC-CccceeeehhhhccCChhHHH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI-PQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~-~~~D~v~~~~vlh~~~~~~~~ 191 (279)
..++||=+|.-...+...|.. ...++...+........+....++.|- .++..+. ..+|++++...= +.+++.
T Consensus 19 ~~~~~l~~~~~~d~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~~~~~d~~~~~~pk---~k~~~~ 92 (342)
T PRK09489 19 EQRRVLFAGDLQDDLPAQLDA--ASVRVHTQQFHHWQVLSRQMGDNARFS-LVATAEDVADCDTLIYYWPK---NKQEAQ 92 (342)
T ss_pred CCCcEEEEcCcchhhHHhhhc--cceEEehhhhHHHHHHHhhcCCceEec-cccCCccCCCCCEEEEECCC---CHHHHH
Confidence 356788888877777776651 223344333333322222222233332 3333232 259988874321 235677
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 192 KLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
-.|.++.+.|+ |||.|+++....
T Consensus 93 ~~l~~~~~~l~---~g~~i~~~G~~~ 115 (342)
T PRK09489 93 FQLMNLLSLLP---VGTDIFVVGENR 115 (342)
T ss_pred HHHHHHHHhCC---CCCEEEEEEecc
Confidence 88999999999 799999987543
No 371
>PLN02602 lactate dehydrogenase
Probab=52.00 E-value=74 Score=28.08 Aligned_cols=99 Identities=9% Similarity=0.058 Sum_probs=53.4
Q ss_pred CEEEEecCCc-cHHHHHHHHHCCCC-eEEEeeChhHHhh--ccc------CCCCeEEee-CCCCCCCCccceeeehhhhc
Q 023625 115 KSLVDVAGGT-GIMARAIATAFPDI-KCTVFDLPHVVDN--LQG------TNDNLDFLG-GNMFEAIPQANAVLLKWILH 183 (279)
Q Consensus 115 ~~vlDvG~G~-G~~~~~l~~~~p~~-~~~~~D~~~~~~~--a~~------~~~ri~~~~-~d~~~~~~~~D~v~~~~vlh 183 (279)
.+|.=||+|. |......+...+-. ..+.+|..+.... +.. ....+.+.. +|+ +...++|+|++..-.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 6999999876 54444433333332 5889998332211 111 112345544 343 2355789998864331
Q ss_pred cCC---hh----HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWN---DE----ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~---~~----~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.-+ .. ...++++++.+.++..+|++.++++.
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 111 11 23456666666665444788888766
No 372
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=51.95 E-value=1.2e+02 Score=24.95 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=51.7
Q ss_pred hCCCCEEEEecCCc-cHHHHHHHHHCCCCe-EEEeeC-hhHHhhcccCC--CCeEEeeCCCCCCCCccceeeehhhhccC
Q 023625 111 FEGLKSLVDVAGGT-GIMARAIATAFPDIK-CTVFDL-PHVVDNLQGTN--DNLDFLGGNMFEAIPQANAVLLKWILHNW 185 (279)
Q Consensus 111 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~--~ri~~~~~d~~~~~~~~D~v~~~~vlh~~ 185 (279)
..+..+|+-.|+|. |..+..++++.. .+ +++.+. ++..+.+++.. +.+... .+...+..++|+++-...
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g-~~~vi~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~d~vl~~~~---- 168 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAG-AREVVGVDPDAARRELAEALGPADPVAAD-TADEIGGRGADVVIEASG---- 168 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CCcEEEECCCHHHHHHHHHcCCCcccccc-chhhhcCCCCCEEEEccC----
Confidence 45567777777655 667777777764 45 888886 55566555432 111100 000001124787775311
Q ss_pred ChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 186 NDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 186 ~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
. ...+....+.++ ++|+++.+..
T Consensus 169 ~----~~~~~~~~~~l~---~~g~~~~~g~ 191 (277)
T cd08255 169 S----PSALETALRLLR---DRGRVVLVGW 191 (277)
T ss_pred C----hHHHHHHHHHhc---CCcEEEEEec
Confidence 1 124666777888 6899887643
No 373
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=51.74 E-value=1.2e+02 Score=26.28 Aligned_cols=93 Identities=12% Similarity=0.127 Sum_probs=53.1
Q ss_pred CCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC----hhHHhhcccCCCC-eEEeeCCCCC--CCCccceeeehhhhcc
Q 023625 113 GLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL----PHVVDNLQGTNDN-LDFLGGNMFE--AIPQANAVLLKWILHN 184 (279)
Q Consensus 113 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~----~~~~~~a~~~~~r-i~~~~~d~~~--~~~~~D~v~~~~vlh~ 184 (279)
+..+|+=+|+| .|.++..+++.. ++++++.+. +.-.+.+++.... +.....+..+ ...++|+++-.-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~---- 246 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEAT---- 246 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECc----
Confidence 45677777754 477777788775 458888874 4455555543111 1111111100 112478777532
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
.. ...+....++++ ++|+++++....
T Consensus 247 -g~---~~~~~~~~~~l~---~~G~~v~~G~~~ 272 (355)
T cd08230 247 -GV---PPLAFEALPALA---PNGVVILFGVPG 272 (355)
T ss_pred -CC---HHHHHHHHHHcc---CCcEEEEEecCC
Confidence 11 135677788899 799998876543
No 374
>PHA03108 poly(A) polymerase small subunit; Provisional
Probab=51.06 E-value=1e+02 Score=26.17 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCEEEEecCCccHHHHHHHHHCCC----CeEEEeeCh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPD----IKCTVFDLP 146 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~~ 146 (279)
+..||=+|.+.|....-|.+.+++ ++++.+|..
T Consensus 61 g~~VVYiGSApG~HI~~L~~lf~~lg~~ikw~LiDp~ 97 (300)
T PHA03108 61 GSTIVYIGSAPGTHIRYLRDHFYSLGVVIKWMLIDGR 97 (300)
T ss_pred CceEEEecCCCCccHHHHHHHHHhcCCCeEEEEECCC
Confidence 359999999999999999999887 589999963
No 375
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=50.81 E-value=34 Score=27.06 Aligned_cols=99 Identities=16% Similarity=0.142 Sum_probs=50.5
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC------------------CCCeEEeeCCCCCCCCcccee
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT------------------NDNLDFLGGNMFEAIPQANAV 176 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------------------~~ri~~~~~d~~~~~~~~D~v 176 (279)
+|.=+|.|.=.+..+++-+..+.+++++|. ++.++..++. ..|+.+. .|+.+....+|+|
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai~~adv~ 80 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEEAIKDADVV 80 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHHHHHH-SEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhhhhhccceE
Confidence 455566665443333333334679999999 7766655421 1233322 1111112347888
Q ss_pred eehhhhccCCh-----hHHHHHHHHHHHhCCCCCCCcEEEEEeeecCC
Q 023625 177 LLKWILHNWND-----EESVKLLKKCKEAIPSKDEGGKVIIIDMAIEN 219 (279)
Q Consensus 177 ~~~~vlh~~~~-----~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~ 219 (279)
+++----.-.+ ....++++.+.+.++ .|.++|++.-.+.
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~----~~~lvV~~STvpp 124 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAIESIAPVLR----PGDLVVIESTVPP 124 (185)
T ss_dssp EE----EBETTTSBETHHHHHHHHHHHHHHC----SCEEEEESSSSST
T ss_pred EEecCCCccccCCccHHHHHHHHHHHHHHHh----hcceEEEccEEEE
Confidence 77532111111 235688899999999 3778887765554
No 376
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=50.68 E-value=1e+02 Score=26.71 Aligned_cols=100 Identities=20% Similarity=0.287 Sum_probs=51.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCC-CeEEEeeC-hhHH-----hhccc---CCCCeEEee-CCCCCCCCccceeeehhhh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPD-IKCTVFDL-PHVV-----DNLQG---TNDNLDFLG-GNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-~~~~-----~~a~~---~~~ri~~~~-~d~~~~~~~~D~v~~~~vl 182 (279)
..+|.=||+|+=..+.+..-..++ ..++++|+ ++.. +.... .....++.. +|+ +...++|+|+...-.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~tag~ 84 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTAGL 84 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECCCC
Confidence 368999998873334444333445 47999998 5432 11111 112345553 554 456679999873311
Q ss_pred cc--------CCh----hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HN--------WND----EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~--------~~~----~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
-. |+. .+...+++++.+.+....|.+.+++..
T Consensus 85 ~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~s 128 (321)
T PTZ00082 85 TKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVIT 128 (321)
T ss_pred CCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 00 011 123445555555553322567666655
No 377
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=50.63 E-value=88 Score=27.22 Aligned_cols=99 Identities=16% Similarity=0.160 Sum_probs=53.5
Q ss_pred CEEEEecC-Cc-cHHHHH-HHHHCC-----CCeEEEeeChhHHhhccc----C-------CCCeEEeeCCCCCCCCccce
Q 023625 115 KSLVDVAG-GT-GIMARA-IATAFP-----DIKCTVFDLPHVVDNLQG----T-------NDNLDFLGGNMFEAIPQANA 175 (279)
Q Consensus 115 ~~vlDvG~-G~-G~~~~~-l~~~~p-----~~~~~~~D~~~~~~~a~~----~-------~~ri~~~~~d~~~~~~~~D~ 175 (279)
.+|.=+|+ |. |..... ++...- ....+.+|..+..+.++. + ..++.+..+| .+...++|+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~daDi 81 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDP-NVAFKDADW 81 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCc-HHHhCCCCE
Confidence 47777886 55 443332 222111 126888998555433331 1 1234444332 334567899
Q ss_pred eeehhhhccCCh-------hHHHHHHHHHHHhCCCCC-CCcEEEEEe
Q 023625 176 VLLKWILHNWND-------EESVKLLKKCKEAIPSKD-EGGKVIIID 214 (279)
Q Consensus 176 v~~~~vlh~~~~-------~~~~~~L~~~~~~L~~~~-pgG~lli~e 214 (279)
|++..-.-.-+. ....++++++.+.++.++ |++.++++.
T Consensus 82 vvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 128 (322)
T cd01338 82 ALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG 128 (322)
T ss_pred EEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 987654322222 134567777777775544 488888875
No 378
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=50.41 E-value=40 Score=27.30 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=47.6
Q ss_pred CCccHHHHHHHHHCCC--CeEEEee--ChhHHhhccc-CCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHHHH
Q 023625 122 GGTGIMARAIATAFPD--IKCTVFD--LPHVVDNLQG-TNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLLKK 196 (279)
Q Consensus 122 ~G~G~~~~~l~~~~p~--~~~~~~D--~~~~~~~a~~-~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L~~ 196 (279)
+|+|..+..|+.++-. .++++-. .|...+.+.. ...+ ...+...+....+|+|++.=.++ ....+++.
T Consensus 7 ~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~--i~~~~~~dA~~~aDVVvLAVP~~-----a~~~v~~~ 79 (211)
T COG2085 7 IGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPL--ITGGSNEDAAALADVVVLAVPFE-----AIPDVLAE 79 (211)
T ss_pred eccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccc--cccCChHHHHhcCCEEEEeccHH-----HHHhHHHH
Confidence 4778877777777643 3455543 2555555443 2222 33333322234589999876554 34567888
Q ss_pred HHHhCCCCCCCcEEEEEee
Q 023625 197 CKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 197 ~~~~L~~~~pgG~lli~e~ 215 (279)
+++.++ |+++|--.
T Consensus 80 l~~~~~-----~KIvID~t 93 (211)
T COG2085 80 LRDALG-----GKIVIDAT 93 (211)
T ss_pred HHHHhC-----CeEEEecC
Confidence 887776 77776443
No 379
>PTZ00325 malate dehydrogenase; Provisional
Probab=50.26 E-value=85 Score=27.30 Aligned_cols=102 Identities=13% Similarity=0.120 Sum_probs=53.8
Q ss_pred CCCEEEEecC-Cc-cHHHHHHHHHCCC-CeEEEeeChhHHhhcccC---CCCeEEee----CCCCCCCCccceeeehhhh
Q 023625 113 GLKSLVDVAG-GT-GIMARAIATAFPD-IKCTVFDLPHVVDNLQGT---NDNLDFLG----GNMFEAIPQANAVLLKWIL 182 (279)
Q Consensus 113 ~~~~vlDvG~-G~-G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~---~~ri~~~~----~d~~~~~~~~D~v~~~~vl 182 (279)
...+|+=+|+ |. |......+..... .+++.+|+......+... ...+.+.. +|..+...+.|+|++..-.
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 3568999986 55 5554444433232 368889982211112111 11333332 2213345578988875544
Q ss_pred ccCCh----h---HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWND----E---ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~----~---~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..-+. + ...++++++.+.++..+|.+.++++.
T Consensus 87 ~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~S 125 (321)
T PTZ00325 87 PRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVS 125 (321)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 22221 1 22347778888887655677776655
No 380
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=50.11 E-value=67 Score=27.95 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=60.7
Q ss_pred hCCCCEEEEec--CCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCC--CeEEeeCCCCCC----CC--ccceeeehh
Q 023625 111 FEGLKSLVDVA--GGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTND--NLDFLGGNMFEA----IP--QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG--~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~--ri~~~~~d~~~~----~~--~~D~v~~~~ 180 (279)
+.+..+||=.| ||-|.+++.|+++.-...++....++-.+.+++... -+.+...|+.+. .+ ++|+|+-.-
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~v 219 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTV 219 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECC
Confidence 56678888887 678889999999986533444444544445555422 334455554432 12 489887632
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
. ...+.+..++|+ ++|+++.+...-
T Consensus 220 -----G----~~~~~~~l~~l~---~~G~lv~ig~~~ 244 (326)
T COG0604 220 -----G----GDTFAASLAALA---PGGRLVSIGALS 244 (326)
T ss_pred -----C----HHHHHHHHHHhc---cCCEEEEEecCC
Confidence 1 244666778888 689999887654
No 381
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=49.98 E-value=1.2e+02 Score=24.34 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=36.2
Q ss_pred CCCEEEEecCCccHHH--HHHHHHCCCCeEEEeeC---hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMA--RAIATAFPDIKCTVFDL---PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~---~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~ 179 (279)
.+++||=||||.=... ..|++. +.++++++. +...+.+.. .++.+....+.. ...++|+|+..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~~--~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVEE--GKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHhC--CCEEEEecCCChhhcCCceEEEEc
Confidence 4678999998754332 234443 356666653 222222222 467776665554 45678988874
No 382
>PRK06223 malate dehydrogenase; Reviewed
Probab=49.87 E-value=84 Score=26.88 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=34.7
Q ss_pred CEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhh-ccc-------CCCCeEEe-eCCCCCCCCccceeeeh
Q 023625 115 KSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDN-LQG-------TNDNLDFL-GGNMFEAIPQANAVLLK 179 (279)
Q Consensus 115 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~-a~~-------~~~ri~~~-~~d~~~~~~~~D~v~~~ 179 (279)
.+|.=||+|. |......+.......++++|. ++..+. +.. ......+. ..|+ +...++|+|++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEEC
Confidence 4788899988 665555444432128999997 333211 111 11122333 2444 345578999875
No 383
>PRK05442 malate dehydrogenase; Provisional
Probab=49.73 E-value=88 Score=27.29 Aligned_cols=101 Identities=15% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCEEEEecC-Cc-cHHHH-HHHHH-----CCCCeEEEeeChhHHhhccc----C-------CCCeEEeeCCCCCCCCcc
Q 023625 113 GLKSLVDVAG-GT-GIMAR-AIATA-----FPDIKCTVFDLPHVVDNLQG----T-------NDNLDFLGGNMFEAIPQA 173 (279)
Q Consensus 113 ~~~~vlDvG~-G~-G~~~~-~l~~~-----~p~~~~~~~D~~~~~~~a~~----~-------~~ri~~~~~d~~~~~~~~ 173 (279)
...+|.=+|+ |. |.... .++.. ......+.+|..+..+.++. + ..++.+..+ -.+...++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~-~y~~~~da 81 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDD-PNVAFKDA 81 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecC-hHHHhCCC
Confidence 3458888886 54 44322 22221 12236888898544322221 1 123444433 23345679
Q ss_pred ceeeehhhhccCCh-------hHHHHHHHHHHHhCCCCC-CCcEEEEEe
Q 023625 174 NAVLLKWILHNWND-------EESVKLLKKCKEAIPSKD-EGGKVIIID 214 (279)
Q Consensus 174 D~v~~~~vlh~~~~-------~~~~~~L~~~~~~L~~~~-pgG~lli~e 214 (279)
|+|++..-.-.-+. ....++++++.+.++.+. |++.++++.
T Consensus 82 DiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 130 (326)
T PRK05442 82 DVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG 130 (326)
T ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 99887554322222 123466666666665322 588888876
No 384
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=49.34 E-value=88 Score=21.82 Aligned_cols=62 Identities=18% Similarity=0.127 Sum_probs=37.5
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCCCccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~ 179 (279)
.+.+||=||||.-.....-.-.--+++++++.... +..+ .++++....+.+...++|+|+..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~~---~~i~~~~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFSE---GLIQLIRREFEEDLDGADLVFAA 67 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHHH---TSCEEEESS-GGGCTTESEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhhh---hHHHHHhhhHHHHHhhheEEEec
Confidence 35788889997766655433333457888887532 2222 56777766664456678888864
No 385
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=49.27 E-value=79 Score=27.26 Aligned_cols=99 Identities=11% Similarity=0.224 Sum_probs=48.3
Q ss_pred EEEEecC-Cc-cHHHHHHHHHCCCC-eEEEeeChhHHhhccc-----------CCCCeEEee-CCCCCCCCccceeeehh
Q 023625 116 SLVDVAG-GT-GIMARAIATAFPDI-KCTVFDLPHVVDNLQG-----------TNDNLDFLG-GNMFEAIPQANAVLLKW 180 (279)
Q Consensus 116 ~vlDvG~-G~-G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~~-----------~~~ri~~~~-~d~~~~~~~~D~v~~~~ 180 (279)
+|.=+|+ |. |......+...+.. +++++|.++..+.++. .....++.. .| .+...++|+|++..
T Consensus 2 kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~aDiViita 80 (309)
T cd05294 2 KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGSDIVIITA 80 (309)
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCCCEEEEec
Confidence 4556664 33 55444444444433 5888898443333321 001123322 24 23455799998865
Q ss_pred hhccCCh---hH----HHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWND---EE----SVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~---~~----~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
-.-.-++ .+ ..++++++.+.++...|++.+++...
T Consensus 81 g~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 81 GVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3321111 11 12556666655543235788777663
No 386
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=49.07 E-value=7.2 Score=33.31 Aligned_cols=96 Identities=20% Similarity=0.299 Sum_probs=63.8
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc------CCCCeEEeeCCCCCCCC--ccceeeehhhh--
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG------TNDNLDFLGGNMFEAIP--QANAVLLKWIL-- 182 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~ri~~~~~d~~~~~~--~~D~v~~~~vl-- 182 (279)
...|+|+=.|.|.++..++=...-..+..+|. |..++..+. ..+|...+.||-..+-+ .+|-|.+...-
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGLlPSs 274 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGLLPSS 274 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecccccc
Confidence 47899999999999984444334457899999 888876653 35677788888766544 48888765432
Q ss_pred -ccCChhHHHHHHHHHHHhCCCCCCCc-EEEEEeeecCCC
Q 023625 183 -HNWNDEESVKLLKKCKEAIPSKDEGG-KVIIIDMAIENQ 220 (279)
Q Consensus 183 -h~~~~~~~~~~L~~~~~~L~~~~pgG-~lli~e~~~~~~ 220 (279)
..|+ -+.++|+| .|| .+-|.|.+-+++
T Consensus 275 e~~W~---------~A~k~Lk~--eggsilHIHenV~~s~ 303 (351)
T KOG1227|consen 275 EQGWP---------TAIKALKP--EGGSILHIHENVKDSD 303 (351)
T ss_pred ccchH---------HHHHHhhh--cCCcEEEEeccccccc
Confidence 2222 23455665 455 666777765554
No 387
>PF10017 Methyltransf_33: Histidine-specific methyltransferase, SAM-dependent; InterPro: IPR019257 This domain is found in methyltransferases and various hypothetical proteins.
Probab=48.96 E-value=38 Score=24.89 Aligned_cols=32 Identities=22% Similarity=0.046 Sum_probs=25.0
Q ss_pred CeeCCHHHHHHHHHHCCCceeEEEecCC-ceeE
Q 023625 243 GKERSVDDWKKLFLAAGFSHYKITPMLG-VRSL 274 (279)
Q Consensus 243 ~~~r~~~e~~~ll~~aGf~~~~~~~~~~-~~~~ 274 (279)
+..++++++..+++++||++...+.-+. ..++
T Consensus 93 S~Ky~~~~~~~l~~~aGl~~~~~w~d~~~~f~l 125 (127)
T PF10017_consen 93 SYKYSPEEFEALAEQAGLEVEKRWTDPKGDFSL 125 (127)
T ss_pred eeCcCHHHHHHHHHHCCCeeEEEEECCCCCeEE
Confidence 3456999999999999999998876653 3443
No 388
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=48.36 E-value=84 Score=28.47 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=43.1
Q ss_pred CCEEEEecCCccHHHHHHHHHCC--CCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeee
Q 023625 114 LKSLVDVAGGTGIMARAIATAFP--DIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLL 178 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~ 178 (279)
..+|+=+|+ |.++..+++... +..++++|. ++.++..++....+.++.||..++ ...+|.+++
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 466777776 677776766552 467899998 777766654335678899998753 125787765
No 389
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=48.25 E-value=48 Score=28.97 Aligned_cols=86 Identities=14% Similarity=0.124 Sum_probs=46.8
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeCh--hHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHH
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLP--HVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~--~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
.++|.=||+|+=..+.+..-+-.+.++++.+.+ ...+.++.. .+.. .|..+-...+|+|++. .+++...
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~--G~~~--~s~~eaa~~ADVVvLa-----VPd~~~~ 87 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEAD--GFEV--LTVAEAAKWADVIMIL-----LPDEVQA 87 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHC--CCee--CCHHHHHhcCCEEEEc-----CCHHHHH
Confidence 567888887763332222222235577766652 333333332 2221 2322223468998874 4566667
Q ss_pred HHH-HHHHHhCCCCCCCcEEE
Q 023625 192 KLL-KKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 192 ~~L-~~~~~~L~~~~pgG~ll 211 (279)
.++ +.+.+.|+ ||..|.
T Consensus 88 ~V~~~~I~~~Lk---~g~iL~ 105 (330)
T PRK05479 88 EVYEEEIEPNLK---EGAALA 105 (330)
T ss_pred HHHHHHHHhcCC---CCCEEE
Confidence 777 77888898 565553
No 390
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=48.22 E-value=1.1e+02 Score=26.36 Aligned_cols=98 Identities=11% Similarity=0.119 Sum_probs=48.8
Q ss_pred EEEEecCCc-cHHHHH-HHHHCCCCeEEEeeC-hhHHh-hcccC------CCCeEEeeCCCCCCCCccceeeehhhhccC
Q 023625 116 SLVDVAGGT-GIMARA-IATAFPDIKCTVFDL-PHVVD-NLQGT------NDNLDFLGGNMFEAIPQANAVLLKWILHNW 185 (279)
Q Consensus 116 ~vlDvG~G~-G~~~~~-l~~~~p~~~~~~~D~-~~~~~-~a~~~------~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~ 185 (279)
+|.=||+|. |..... ++.+...-.++++|. +...+ .+... .....+..+|+ +...++|++++..-.-.-
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~~~ 80 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGANQK 80 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCCCC
Confidence 577788876 333333 333322246899998 33232 22111 12233344443 234568999875433111
Q ss_pred Chh-------HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 186 NDE-------ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 186 ~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+.. ....+++++.+.++..+|+|.+++..
T Consensus 81 ~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 81 PGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 111 13455665555554333688888774
No 391
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=48.05 E-value=1.8e+02 Score=25.48 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=27.0
Q ss_pred hCCCCEEEEec-CCccHHHHHHHHHCCCCeEEEeeCh
Q 023625 111 FEGLKSLVDVA-GGTGIMARAIATAFPDIKCTVFDLP 146 (279)
Q Consensus 111 ~~~~~~vlDvG-~G~G~~~~~l~~~~p~~~~~~~D~~ 146 (279)
..++.+|-=+| ||-|+++..++++. ..+++++|..
T Consensus 179 ~~pG~~vgI~GlGGLGh~aVq~AKAM-G~rV~vis~~ 214 (360)
T KOG0023|consen 179 LGPGKWVGIVGLGGLGHMAVQYAKAM-GMRVTVISTS 214 (360)
T ss_pred CCCCcEEEEecCcccchHHHHHHHHh-CcEEEEEeCC
Confidence 34566655555 55999999999997 5799999984
No 392
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=48.01 E-value=53 Score=24.90 Aligned_cols=28 Identities=7% Similarity=0.151 Sum_probs=7.1
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
...+.+.++++++.+.+.| |+|.+++.=
T Consensus 7 Vd~~~r~~Vf~eVi~~~GP--pDaTVvVsv 34 (146)
T PF08952_consen 7 VDEEKRESVFEEVISSQGP--PDATVVVSV 34 (146)
T ss_dssp -------------S-------TT-EEEEEE
T ss_pred eCHHHHHHHHHHHHHhcCC--CCceEEEEe
Confidence 3456678999999999999 999988743
No 393
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=47.57 E-value=62 Score=28.04 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=51.0
Q ss_pred EEEecC-Cc-cHHHHHHHHHCCC-CeEEEeeChhHHhhcccC---CCCeEEee--C--CCCCCCCccceeeehhhhccCC
Q 023625 117 LVDVAG-GT-GIMARAIATAFPD-IKCTVFDLPHVVDNLQGT---NDNLDFLG--G--NMFEAIPQANAVLLKWILHNWN 186 (279)
Q Consensus 117 vlDvG~-G~-G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~---~~ri~~~~--~--d~~~~~~~~D~v~~~~vlh~~~ 186 (279)
|.=||+ |. |......+...+- -..+.+|+.+....+..+ ...+.+.. + |..+...++|+|++..-.-.-+
T Consensus 2 V~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~~ 81 (312)
T TIGR01772 2 VAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRKP 81 (312)
T ss_pred EEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCCC
Confidence 555776 54 4444433333333 368899985422222211 12233332 2 2234566799888754332212
Q ss_pred h---h----HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 187 D---E----ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 187 ~---~----~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
. . ...++++++.+.++..+|++.++++..
T Consensus 82 g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 82 GMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred CccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1 1 234667777766654447898887654
No 394
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=46.87 E-value=1.8e+02 Score=26.31 Aligned_cols=61 Identities=18% Similarity=0.222 Sum_probs=41.3
Q ss_pred EEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCC-------CCccceeeeh
Q 023625 116 SLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA-------IPQANAVLLK 179 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~-------~~~~D~v~~~ 179 (279)
+|+=+|+ |.++..+++.. .+..++++|. ++.++.+++. ..++++.||..++ ..++|.+++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~-~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDR-LDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhh-cCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 4555665 78888777754 3567899998 6666666542 3578888988753 2258877764
No 395
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=46.80 E-value=92 Score=27.11 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=51.4
Q ss_pred CCEEEEecC-Cc-cHHHHHHHHHCCCC------eEEEeeChhHHhhccc----C-------CCCeEEeeCCCCCCCCccc
Q 023625 114 LKSLVDVAG-GT-GIMARAIATAFPDI------KCTVFDLPHVVDNLQG----T-------NDNLDFLGGNMFEAIPQAN 174 (279)
Q Consensus 114 ~~~vlDvG~-G~-G~~~~~l~~~~p~~------~~~~~D~~~~~~~a~~----~-------~~ri~~~~~d~~~~~~~~D 174 (279)
..+|.=||+ |. |......+...+-+ ..+.+|..+..+.++. + ...+.+.. +-.+...++|
T Consensus 3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~daD 81 (323)
T TIGR01759 3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATT-DPEEAFKDVD 81 (323)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEec-ChHHHhCCCC
Confidence 357777885 54 55444433333322 6889998543322221 1 11233332 2223445689
Q ss_pred eeeehhhhccCC---hh----HHHHHHHHHHHhCCCCCC-CcEEEEEe
Q 023625 175 AVLLKWILHNWN---DE----ESVKLLKKCKEAIPSKDE-GGKVIIID 214 (279)
Q Consensus 175 ~v~~~~vlh~~~---~~----~~~~~L~~~~~~L~~~~p-gG~lli~e 214 (279)
+|++..-.-.-+ .. ...++++++.+.++...| ++.++++.
T Consensus 82 vVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs 129 (323)
T TIGR01759 82 AALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG 129 (323)
T ss_pred EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 888754332111 11 234566666666654445 88888876
No 396
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=46.42 E-value=1.4e+02 Score=25.31 Aligned_cols=88 Identities=14% Similarity=0.068 Sum_probs=44.1
Q ss_pred EEEEecCCccHH--HHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCC------CCC---C-CCccceeeehhhhc
Q 023625 116 SLVDVAGGTGIM--ARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGN------MFE---A-IPQANAVLLKWILH 183 (279)
Q Consensus 116 ~vlDvG~G~G~~--~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d------~~~---~-~~~~D~v~~~~vlh 183 (279)
+|+=+|+|.-.. +..|++. +..+++++.++.++..++..-++....++ ..+ + ...+|++++.--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk-- 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA--GRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK-- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC--CCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec--
Confidence 466777665433 3334443 45688888754444443321111111111 111 1 235898877532
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
..+...+++.+.+.+. ++..++.+
T Consensus 78 ---~~~~~~~~~~l~~~~~---~~~~ii~~ 101 (305)
T PRK12921 78 ---AYQLDAAIPDLKPLVG---EDTVIIPL 101 (305)
T ss_pred ---ccCHHHHHHHHHhhcC---CCCEEEEe
Confidence 2345667788888787 45545433
No 397
>PRK11524 putative methyltransferase; Provisional
Probab=46.08 E-value=58 Score=27.66 Aligned_cols=41 Identities=7% Similarity=-0.019 Sum_probs=34.4
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG 154 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~ 154 (279)
.++..|||-=||+|..+.+..+. +-+++++|+ ++.++.|+.
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 56889999999999999877765 457999999 888888764
No 398
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=45.31 E-value=1.2e+02 Score=27.53 Aligned_cols=99 Identities=14% Similarity=0.144 Sum_probs=57.3
Q ss_pred CCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehh-hhcc-CC
Q 023625 113 GLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKW-ILHN-WN 186 (279)
Q Consensus 113 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~-vlh~-~~ 186 (279)
..+++|=||.| .|.....-+....--++++... ..+.+.|++.. .++...+-.. -...+|+|+++- .-|. ++
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~--~~~~~l~el~~~l~~~DvVissTsa~~~ii~ 254 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG--AEAVALEELLEALAEADVVISSTSAPHPIIT 254 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC--CeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence 46789999999 7777665555444456777765 44444455542 3333332222 245799999863 2232 33
Q ss_pred hhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCC
Q 023625 187 DEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQD 223 (279)
Q Consensus 187 ~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~ 223 (279)
.+ .+.+++++ +.. ++++|...|.+-.+
T Consensus 255 ~~-------~ve~a~~~--r~~-~livDiavPRdie~ 281 (414)
T COG0373 255 RE-------MVERALKI--RKR-LLIVDIAVPRDVEP 281 (414)
T ss_pred HH-------HHHHHHhc--ccC-eEEEEecCCCCCCc
Confidence 33 33444543 223 89999988876544
No 399
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=45.28 E-value=1.6e+02 Score=25.56 Aligned_cols=99 Identities=14% Similarity=0.206 Sum_probs=51.1
Q ss_pred EEEEecCC-ccHHHH-HHHHHCCCCeEEEeeChhHHhhc--cc-------CCCCeEEee-CCCCCCCCccceeeehhhhc
Q 023625 116 SLVDVAGG-TGIMAR-AIATAFPDIKCTVFDLPHVVDNL--QG-------TNDNLDFLG-GNMFEAIPQANAVLLKWILH 183 (279)
Q Consensus 116 ~vlDvG~G-~G~~~~-~l~~~~p~~~~~~~D~~~~~~~a--~~-------~~~ri~~~~-~d~~~~~~~~D~v~~~~vlh 183 (279)
+|.=||.| .|.... .|+.+......+++|+++-.... .. ...++.... +| +++..++|+|++..-.-
T Consensus 2 KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~-y~~~~~aDiVvitAG~p 80 (313)
T COG0039 2 KVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGD-YEDLKGADIVVITAGVP 80 (313)
T ss_pred eEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCC-hhhhcCCCEEEEeCCCC
Confidence 45556652 233222 22222233378889986211111 11 112344444 34 44556799998866332
Q ss_pred cCCh-------hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 184 NWND-------EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 184 ~~~~-------~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.-|- +...++++.+.+.++..+|++.++++..
T Consensus 81 rKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtN 119 (313)
T COG0039 81 RKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTN 119 (313)
T ss_pred CCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecC
Confidence 2221 1345677777777755457888888764
No 400
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=44.95 E-value=1.1e+02 Score=29.97 Aligned_cols=82 Identities=17% Similarity=0.134 Sum_probs=44.2
Q ss_pred CEEEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHH
Q 023625 115 KSLVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 115 ~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
.+|.=||+|. +.++..+.+.....+++++|. ++.++.+++... +.....|..+....+|+|++.- +++...
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~-~~~~~~~~~~~~~~aDvVilav-----p~~~~~ 77 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGV-IDRGEEDLAEAVSGADVIVLAV-----PVLAME 77 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCC-CCcccCCHHHHhcCCCEEEECC-----CHHHHH
Confidence 5677777654 223333333322236888998 565655554311 1001111111133589888753 455677
Q ss_pred HHHHHHHHhCC
Q 023625 192 KLLKKCKEAIP 202 (279)
Q Consensus 192 ~~L~~~~~~L~ 202 (279)
.+++.+.+.++
T Consensus 78 ~vl~~l~~~~~ 88 (735)
T PRK14806 78 KVLADLKPLLS 88 (735)
T ss_pred HHHHHHHHhcC
Confidence 88888888887
No 401
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=44.79 E-value=86 Score=23.44 Aligned_cols=98 Identities=13% Similarity=0.166 Sum_probs=52.3
Q ss_pred EEEEecC-C-ccHHHHHHHHHCCCC-eEEEeeChhHHhhcc--c------C-CCCeEEeeCCCCCCCCccceeeehhhhc
Q 023625 116 SLVDVAG-G-TGIMARAIATAFPDI-KCTVFDLPHVVDNLQ--G------T-NDNLDFLGGNMFEAIPQANAVLLKWILH 183 (279)
Q Consensus 116 ~vlDvG~-G-~G~~~~~l~~~~p~~-~~~~~D~~~~~~~a~--~------~-~~ri~~~~~d~~~~~~~~D~v~~~~vlh 183 (279)
+|.=||+ | .|.....++...+-. +.+.+|..+....+. . . ...+.+.. +-.+...++|+|++..-..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~-~~~~~~~~aDivvitag~~ 80 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITS-GDYEALKDADIVVITAGVP 80 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEE-SSGGGGTTESEEEETTSTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccc-ccccccccccEEEEecccc
Confidence 4566666 3 455555555554543 589999853322222 1 1 12334444 4444556799998865432
Q ss_pred cCC---h----hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWN---D----EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~---~----~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.-+ . +...++++++.+.++..+|+|.++++.
T Consensus 81 ~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 81 RKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred ccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 222 1 234566666666664433688887754
No 402
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.29 E-value=1.8e+02 Score=23.94 Aligned_cols=76 Identities=14% Similarity=0.078 Sum_probs=47.2
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCC--CeEEEeeC--hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCCh
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPD--IKCTVFDL--PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWND 187 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~--~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~ 187 (279)
...+.||-.||..|..+.++++++.. +++...-. +.+...+.+ .++.....|.. .+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~--~gl~~~kLDV~------------------~~ 64 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQ--FGLKPYKLDVS------------------KP 64 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHh--hCCeeEEeccC------------------Ch
Confidence 34578999999999999999998753 44444432 333333322 23444444443 45
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEE
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli 212 (279)
+++.+++.+++.- |+|+|=+
T Consensus 65 ~~V~~v~~evr~~-----~~Gkld~ 84 (289)
T KOG1209|consen 65 EEVVTVSGEVRAN-----PDGKLDL 84 (289)
T ss_pred HHHHHHHHHHhhC-----CCCceEE
Confidence 6677788877653 4677644
No 403
>PRK13699 putative methylase; Provisional
Probab=44.24 E-value=69 Score=26.26 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=32.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQ 153 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~ 153 (279)
.++..|||-=||+|..+.+..+. +-+++++|+ +...+.+.
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHH
Confidence 46789999999999999887775 457999999 77777665
No 404
>PLN02688 pyrroline-5-carboxylate reductase
Probab=43.84 E-value=1.1e+02 Score=25.43 Aligned_cols=79 Identities=14% Similarity=0.215 Sum_probs=43.3
Q ss_pred EEEEecCCc--cHHHHHHHHHC--CCCeEEEe-eC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhH
Q 023625 116 SLVDVAGGT--GIMARAIATAF--PDIKCTVF-DL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEE 189 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~--p~~~~~~~-D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~ 189 (279)
+|.=||+|. +.++..|++.. +..+++++ |. ++..+.+... .+... .+..+-....|+|++.- +++.
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~--g~~~~-~~~~e~~~~aDvVil~v-----~~~~ 73 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSL--GVKTA-ASNTEVVKSSDVIILAV-----KPQV 73 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHc--CCEEe-CChHHHHhcCCEEEEEE-----CcHH
Confidence 355567664 34445555542 23367888 76 5444444332 23221 12111123579888753 5667
Q ss_pred HHHHHHHHHHhCC
Q 023625 190 SVKLLKKCKEAIP 202 (279)
Q Consensus 190 ~~~~L~~~~~~L~ 202 (279)
...+++.+...++
T Consensus 74 ~~~vl~~l~~~~~ 86 (266)
T PLN02688 74 VKDVLTELRPLLS 86 (266)
T ss_pred HHHHHHHHHhhcC
Confidence 7888888887777
No 405
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=43.33 E-value=94 Score=26.64 Aligned_cols=95 Identities=9% Similarity=0.128 Sum_probs=49.8
Q ss_pred EecCCc-cHHHHHHHHHCCC-CeEEEeeC-hhHHh-hcccC----C--CCeEEe-eCCCCCCCCccceeeehhhhccCC-
Q 023625 119 DVAGGT-GIMARAIATAFPD-IKCTVFDL-PHVVD-NLQGT----N--DNLDFL-GGNMFEAIPQANAVLLKWILHNWN- 186 (279)
Q Consensus 119 DvG~G~-G~~~~~l~~~~p~-~~~~~~D~-~~~~~-~a~~~----~--~ri~~~-~~d~~~~~~~~D~v~~~~vlh~~~- 186 (279)
=||+|. |......+...+- ..++++|. ++.++ .+..+ . ....+. ..| .+...++|++++..-.-.-+
T Consensus 3 iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~~~ 81 (300)
T cd00300 3 IIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRKPG 81 (300)
T ss_pred EECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCCCC
Confidence 367665 5544444444343 35899998 33222 22211 0 123333 344 33455789998755321111
Q ss_pred --hh----HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 187 --DE----ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 187 --~~----~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. ....+++++.+.++.+.|+|+++++.
T Consensus 82 ~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 82 ETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 11 24566777777776544789888765
No 406
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=43.07 E-value=26 Score=31.63 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=43.2
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-CCCeEEeeCCCCC-CC-Cc--cceeeehhhhccCChhH
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-NDNLDFLGGNMFE-AI-PQ--ANAVLLKWILHNWNDEE 189 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-~~ri~~~~~d~~~-~~-~~--~D~v~~~~vlh~~~~~~ 189 (279)
.|+=||+|...+..++..+..+.+++++|. +.+-.+.... ..|+.+...+... .+ .. -+--++..+|+.++.++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 477899999888888887778899999998 5554443321 2577776633221 11 01 12224455566666666
Q ss_pred HHHHHHHH
Q 023625 190 SVKLLKKC 197 (279)
Q Consensus 190 ~~~~L~~~ 197 (279)
..+++++.
T Consensus 82 ~~~ff~~~ 89 (409)
T PF03486_consen 82 LIAFFEEL 89 (409)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 66666554
No 407
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=42.90 E-value=27 Score=28.55 Aligned_cols=47 Identities=21% Similarity=0.167 Sum_probs=37.8
Q ss_pred HHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHH
Q 023625 101 GIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVV 149 (279)
Q Consensus 101 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 149 (279)
..+++.+. .-+..+.+|.--|.|..+..+++++|.++..++|..++.
T Consensus 33 devl~~ls--pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A 79 (303)
T KOG2782|consen 33 DEVLDILS--PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVA 79 (303)
T ss_pred hhHHHHcC--CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHH
Confidence 44555554 345789999999999999999999999999999984443
No 408
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=42.32 E-value=59 Score=28.30 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=28.4
Q ss_pred CCCccceeeehhhhccCChh-------HHHHHHHHHHHhCCCC-CCCcEEEEEe
Q 023625 169 AIPQANAVLLKWILHNWNDE-------ESVKLLKKCKEAIPSK-DEGGKVIIID 214 (279)
Q Consensus 169 ~~~~~D~v~~~~vlh~~~~~-------~~~~~L~~~~~~L~~~-~pgG~lli~e 214 (279)
...++|+|+...-...-+.+ ...++++++.+.++.+ +|++.++++.
T Consensus 72 ~~~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs 125 (324)
T TIGR01758 72 AFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG 125 (324)
T ss_pred HhCCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 34568999876544322111 3356677777777554 2788888866
No 409
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=41.85 E-value=85 Score=26.80 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=42.1
Q ss_pred EEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCCccceeeehhhhccCChhH
Q 023625 116 SLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIPQANAVLLKWILHNWNDEE 189 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~v~~~~vlh~~~~~~ 189 (279)
+|-=||+|. .+..+++.. .+.+++++|. ++.++...+. . +.. ..+..+ .....|+|++. .++..
T Consensus 2 ~Ig~IGlG~--mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~-g-~~~-~~s~~~~~~~~~~~dvIi~~-----vp~~~ 71 (298)
T TIGR00872 2 QLGLIGLGR--MGANIVRRLAKRGHDCVGYDHDQDAVKAMKED-R-TTG-VANLRELSQRLSAPRVVWVM-----VPHGI 71 (298)
T ss_pred EEEEEcchH--HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-C-Ccc-cCCHHHHHhhcCCCCEEEEE-----cCchH
Confidence 345566654 333333322 3567888998 6655555432 1 111 111111 12346888774 35556
Q ss_pred HHHHHHHHHHhCC
Q 023625 190 SVKLLKKCKEAIP 202 (279)
Q Consensus 190 ~~~~L~~~~~~L~ 202 (279)
...+++.+...++
T Consensus 72 ~~~v~~~l~~~l~ 84 (298)
T TIGR00872 72 VDAVLEELAPTLE 84 (298)
T ss_pred HHHHHHHHHhhCC
Confidence 7788889988888
No 410
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=41.82 E-value=42 Score=29.19 Aligned_cols=46 Identities=17% Similarity=0.220 Sum_probs=29.5
Q ss_pred CCCccceeeehhhhccCChh-------HHHHHHHHHHHhCCCC-CCCcEEEEEe
Q 023625 169 AIPQANAVLLKWILHNWNDE-------ESVKLLKKCKEAIPSK-DEGGKVIIID 214 (279)
Q Consensus 169 ~~~~~D~v~~~~vlh~~~~~-------~~~~~L~~~~~~L~~~-~pgG~lli~e 214 (279)
...++|+|+...-...-+.+ ...++++++.+.+++. +|++.++++.
T Consensus 73 ~~~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs 126 (323)
T cd00704 73 AFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG 126 (323)
T ss_pred HhCCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45578988876655443332 2456777777777554 2789888865
No 411
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=41.76 E-value=1.2e+02 Score=27.14 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=55.8
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeChhH----HhhcccC---CCCeEEeeCCCCCCCC-ccceeeehhhhccCCh
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDLPHV----VDNLQGT---NDNLDFLGGNMFEAIP-QANAVLLKWILHNWND 187 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~----~~~a~~~---~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~ 187 (279)
.|+=++=.-|.++..++...|. .+.|.--. ..+++.. .+.+++. +...+.| ++|+|++...= +-
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~---~~~ds~~~~~~~~~n~~~n~~~~~~~~~~--~~~~~~~~~~d~vl~~~PK---~~ 118 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY---SIGDSYISELATRENLRLNGIDESSVKFL--DSTADYPQQPGVVLIKVPK---TL 118 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC---eeehHHHHHHHHHHHHHHcCCCcccceee--cccccccCCCCEEEEEeCC---CH
Confidence 8999999999999999976553 34664111 1112211 1224433 3344445 59998885421 22
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
......|..+.+.++ ||+.|++.+.
T Consensus 119 ~~l~~~l~~l~~~l~---~~~~ii~g~~ 143 (378)
T PRK15001 119 ALLEQQLRALRKVVT---SDTRIIAGAK 143 (378)
T ss_pred HHHHHHHHHHHhhCC---CCCEEEEEEe
Confidence 456678899999999 7898776554
No 412
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=41.34 E-value=52 Score=29.89 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=42.2
Q ss_pred CEEEEec-CCccHHHHHHHHHCCC-CeEEEeeChhHHhhcccCCCCeEEeeCCCCC-CCCccceeeehhhhc
Q 023625 115 KSLVDVA-GGTGIMARAIATAFPD-IKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLKWILH 183 (279)
Q Consensus 115 ~~vlDvG-~G~G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~~vlh 183 (279)
++|+=+| ||+|.-+.+++.+... .++++.|........+.+...+++..+.... .+.++|+|+.+-.+.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~SpgI~ 79 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPGIA 79 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCCCC
Confidence 5677777 6788888888887655 8899999732211111122356665553222 245689888876653
No 413
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=41.22 E-value=87 Score=28.34 Aligned_cols=87 Identities=15% Similarity=0.130 Sum_probs=52.5
Q ss_pred CCCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHH
Q 023625 113 GLKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 113 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
.+++|+=+|+|. |......++.. ++++++.|. +.-.+.|+..+ .+.. +..+....+|+++..- ..
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~R~~~A~~~G--~~~~--~~~e~v~~aDVVI~at-----G~--- 267 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPICALQAAMEG--YEVM--TMEEAVKEGDIFVTTT-----GN--- 267 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChhhHHHHHhcC--CEEc--cHHHHHcCCCEEEECC-----CC---
Confidence 568999999886 55555555544 568999998 65566666532 2221 1111234589888642 11
Q ss_pred HHHHHH-HHHhCCCCCCCcEEEEEee
Q 023625 191 VKLLKK-CKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 191 ~~~L~~-~~~~L~~~~pgG~lli~e~ 215 (279)
..++.. ..+.++ +||+++.+-.
T Consensus 268 ~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 268 KDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred HHHHHHHHHhcCC---CCcEEEEeCC
Confidence 234554 478889 6888877663
No 414
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.96 E-value=1.7e+02 Score=24.77 Aligned_cols=84 Identities=17% Similarity=0.247 Sum_probs=46.8
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC-----------------------CCCeEEeeCCCCCCC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT-----------------------NDNLDFLGGNMFEAI 170 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-----------------------~~ri~~~~~d~~~~~ 170 (279)
.+|.=||+|.=..+++.+-...+.+++++|. ++.++.+++. ..++++. .|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT-TDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-CCHHHHh
Confidence 4778888875444433333334568999998 6665554310 0233322 2322223
Q ss_pred CccceeeehhhhccCChhHHHHHHHHHHHhCC
Q 023625 171 PQANAVLLKWILHNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~ 202 (279)
.++|+|+..-. . ..+-...+++++.+.++
T Consensus 83 ~~aDlVieavp-e--~~~~k~~~~~~l~~~~~ 111 (287)
T PRK08293 83 KDADLVIEAVP-E--DPEIKGDFYEELAKVAP 111 (287)
T ss_pred cCCCEEEEecc-C--CHHHHHHHHHHHHhhCC
Confidence 46888887532 0 11234577888888887
No 415
>CHL00194 ycf39 Ycf39; Provisional
Probab=40.74 E-value=2.3e+02 Score=24.17 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=36.8
Q ss_pred ecCCccHHHHHHHHHC--CCCeEEEeeCh-hHHhhcccCCCCeEEeeCCCCCC------CCccceeee
Q 023625 120 VAGGTGIMARAIATAF--PDIKCTVFDLP-HVVDNLQGTNDNLDFLGGNMFEA------IPQANAVLL 178 (279)
Q Consensus 120 vG~G~G~~~~~l~~~~--p~~~~~~~D~~-~~~~~a~~~~~ri~~~~~d~~~~------~~~~D~v~~ 178 (279)
|=||+|..+..++++. .+.++++++.. ....... ..+++++.+|+.++ +.+.|+|+.
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~--~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLK--EWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHh--hcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 4478898888887764 34578888763 2211111 24789999999874 235787775
No 416
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=40.72 E-value=34 Score=31.27 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=25.8
Q ss_pred CEEEEecCC-ccHHHH-HHHHHCCCCeEEEeeCh
Q 023625 115 KSLVDVAGG-TGIMAR-AIATAFPDIKCTVFDLP 146 (279)
Q Consensus 115 ~~vlDvG~G-~G~~~~-~l~~~~p~~~~~~~D~~ 146 (279)
..|+-||+| +|..+. .|+++.|+.+++++|..
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~ 58 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEAD 58 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 469999999 787766 67777788999999963
No 417
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=40.71 E-value=1.4e+02 Score=26.12 Aligned_cols=96 Identities=21% Similarity=0.288 Sum_probs=58.1
Q ss_pred CCEEEEecCCc-cHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCCeEEeeCCCCC---CCCccceeeehhhhccCCh
Q 023625 114 LKSLVDVAGGT-GIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNMFE---AIPQANAVLLKWILHNWND 187 (279)
Q Consensus 114 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~~~---~~~~~D~v~~~~vlh~~~~ 187 (279)
..+|+=+|||. |..+..++-- -+..++++|+ ..-+..... ...|+...-.+... ....+|+++-.=.+ +-
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~g-lgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLI---pg 243 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIG-LGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLI---PG 243 (371)
T ss_pred CccEEEECCccccchHHHHHhc-cCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEe---cC
Confidence 35788888875 5666666543 3568999998 555554443 24577666555433 34579988764333 22
Q ss_pred hHH-HHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 188 EES-VKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 188 ~~~-~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.++ .-+.++..+.|+ ||+. |+|..++
T Consensus 244 akaPkLvt~e~vk~Mk---pGsV--ivDVAiD 270 (371)
T COG0686 244 AKAPKLVTREMVKQMK---PGSV--IVDVAID 270 (371)
T ss_pred CCCceehhHHHHHhcC---CCcE--EEEEEEc
Confidence 222 345677788999 6874 4454444
No 418
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=40.62 E-value=2.3e+02 Score=24.23 Aligned_cols=89 Identities=15% Similarity=0.101 Sum_probs=50.2
Q ss_pred CCCEEEEecCCc-cHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccCCCCeEEeeC---CCCC--CC-Cccceeeehhhhc
Q 023625 113 GLKSLVDVAGGT-GIMARAIATAFPDI-KCTVFDL-PHVVDNLQGTNDNLDFLGG---NMFE--AI-PQANAVLLKWILH 183 (279)
Q Consensus 113 ~~~~vlDvG~G~-G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~~---d~~~--~~-~~~D~v~~~~vlh 183 (279)
+..+||-.|+|. |..+..++++. +. ++++.+. ++..+.+++... -.++.. ++.. .. .++|+++-..-
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~-G~~~v~~~~~s~~~~~~~~~~g~-~~vi~~~~~~~~~~~~~~~~vd~vld~~g-- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRA-GAAEIVATDLADAPLAVARAMGA-DETVNLARDPLAAYAADKGDFDVVFEASG-- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHcCC-CEEEcCCchhhhhhhccCCCccEEEECCC--
Confidence 567777777765 77777788875 44 6777776 555554443211 111111 1111 11 23788875321
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. ..++.+.+.|+ ++|+++.+.
T Consensus 241 --~~----~~~~~~~~~L~---~~G~~v~~g 262 (339)
T cd08232 241 --AP----AALASALRVVR---PGGTVVQVG 262 (339)
T ss_pred --CH----HHHHHHHHHHh---cCCEEEEEe
Confidence 11 23667778888 689988764
No 419
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=40.59 E-value=79 Score=27.30 Aligned_cols=88 Identities=15% Similarity=0.108 Sum_probs=57.9
Q ss_pred CCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC--hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHH
Q 023625 113 GLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL--PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
..++|.=||||+=..+.++--+-.++.+++-=. ....+.|.+ +..+ ..+..+..+.+|+|++ -.||+.-
T Consensus 17 kgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~--dGf~--V~~v~ea~k~ADvim~-----L~PDe~q 87 (338)
T COG0059 17 KGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE--DGFK--VYTVEEAAKRADVVMI-----LLPDEQQ 87 (338)
T ss_pred cCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh--cCCE--eecHHHHhhcCCEEEE-----eCchhhH
Confidence 357999999999999888888877777554433 233455554 2333 2222233456899876 2578777
Q ss_pred HHHHH-HHHHhCCCCCCCcEEEE
Q 023625 191 VKLLK-KCKEAIPSKDEGGKVII 212 (279)
Q Consensus 191 ~~~L~-~~~~~L~~~~pgG~lli 212 (279)
.++.+ .+...|+ .|-.|.+
T Consensus 88 ~~vy~~~I~p~Lk---~G~aL~F 107 (338)
T COG0059 88 KEVYEKEIAPNLK---EGAALGF 107 (338)
T ss_pred HHHHHHHhhhhhc---CCceEEe
Confidence 77887 8999999 3554444
No 420
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=40.55 E-value=54 Score=27.69 Aligned_cols=55 Identities=13% Similarity=0.151 Sum_probs=43.8
Q ss_pred hCCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCC
Q 023625 111 FEGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFE 168 (279)
Q Consensus 111 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~ 168 (279)
+.++..-+|+|...|.++-.|.++ ++.++.+|-..+.+..-. .++|+.+..|-|+
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~d-tg~v~h~r~DGfk 263 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMD-TGQVTHLREDGFK 263 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhc-ccceeeeeccCcc
Confidence 456788999999999999999987 688999997555444333 3688888888877
No 421
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=40.31 E-value=1.7e+02 Score=25.26 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=25.1
Q ss_pred CCCEEEEecCCccHH----HHHHHHHCCCCeEEEeeC
Q 023625 113 GLKSLVDVAGGTGIM----ARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~----~~~l~~~~p~~~~~~~D~ 145 (279)
+.-..+=.|.|||.. +..|.+++|+++++++|.
T Consensus 168 g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP 204 (300)
T COG0031 168 GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDP 204 (300)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECC
Confidence 335566678888864 566777889999999996
No 422
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=40.29 E-value=1e+02 Score=26.61 Aligned_cols=98 Identities=12% Similarity=0.114 Sum_probs=51.2
Q ss_pred EEEEecC-Cc-cHHHHHHHHHCCC-CeEEEeeChhHHhhcc--cC--C-CCeEEee--CC--CCCCCCccceeeehhhhc
Q 023625 116 SLVDVAG-GT-GIMARAIATAFPD-IKCTVFDLPHVVDNLQ--GT--N-DNLDFLG--GN--MFEAIPQANAVLLKWILH 183 (279)
Q Consensus 116 ~vlDvG~-G~-G~~~~~l~~~~p~-~~~~~~D~~~~~~~a~--~~--~-~ri~~~~--~d--~~~~~~~~D~v~~~~vlh 183 (279)
+|.=||+ |. |......+...+- -..+.+|+. ...+. .+ . ..+.+.. +| +.+...++|+|++..-.-
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~ 79 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVP 79 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCC
Confidence 5666776 55 4443333333333 368888976 21111 11 1 1233332 32 244566789888755432
Q ss_pred cCChh-------HHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 184 NWNDE-------ESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 184 ~~~~~-------~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.-+.+ ...++++++.+.++..+|++.++++..
T Consensus 80 ~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN 118 (310)
T cd01337 80 RKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN 118 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 22211 335666777766654447898887653
No 423
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=39.93 E-value=11 Score=26.00 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.3
Q ss_pred EEEecCCccHHHHHHHHH
Q 023625 117 LVDVAGGTGIMARAIATA 134 (279)
Q Consensus 117 vlDvG~G~G~~~~~l~~~ 134 (279)
=+|||||.|...-+-.+.
T Consensus 6 NIDIGcG~GNTmda~fRs 23 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRS 23 (124)
T ss_pred ccccccCCCcchhhhhhc
Confidence 379999999986654443
No 424
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=39.89 E-value=6.3 Score=27.03 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=20.2
Q ss_pred CccccccCceeecCC------CeEecChhcchhh
Q 023625 1 MRILVHSGFFAQQKD------DEYFLTPASRLLL 28 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~------~~y~~t~~s~~L~ 28 (279)
|+-|...|++++... -.|++|+.|+.|.
T Consensus 40 L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~ 73 (90)
T PF01638_consen 40 LKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL 73 (90)
T ss_dssp HHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred HHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence 456888999988632 2599999998664
No 425
>PRK05086 malate dehydrogenase; Provisional
Probab=39.71 E-value=1.3e+02 Score=25.93 Aligned_cols=98 Identities=15% Similarity=0.209 Sum_probs=48.9
Q ss_pred EEEEecCCccHHHHHHH---HH-CCCC-eEEEeeChhHHh-hcccCC--C-CeEEee---CCCCCCCCccceeeehh-hh
Q 023625 116 SLVDVAGGTGIMARAIA---TA-FPDI-KCTVFDLPHVVD-NLQGTN--D-NLDFLG---GNMFEAIPQANAVLLKW-IL 182 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~---~~-~p~~-~~~~~D~~~~~~-~a~~~~--~-ri~~~~---~d~~~~~~~~D~v~~~~-vl 182 (279)
+|+=||+ +|..+.+++ .. .+.. .++.+|..+..+ .+.... + ...+.. .|+.+...+.|+|++.. ..
T Consensus 2 KI~IIGA-sG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~ 80 (312)
T PRK05086 2 KVAVLGA-AGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA 80 (312)
T ss_pred EEEEECC-CCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence 5677775 444444444 33 3433 577888732211 011111 1 223332 23334455689888754 55
Q ss_pred ccCCh---h---HHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 183 HNWND---E---ESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 183 h~~~~---~---~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
|.-.. + ...++++++.+.|+..+|.+.++++.
T Consensus 81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs 118 (312)
T PRK05086 81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT 118 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 54221 1 12346777777776544677777654
No 426
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=39.67 E-value=1.3e+02 Score=25.00 Aligned_cols=68 Identities=18% Similarity=0.248 Sum_probs=43.6
Q ss_pred CCEEEEecC-CccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCC-ccceeeehhhhccCChh
Q 023625 114 LKSLVDVAG-GTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIP-QANAVLLKWILHNWNDE 188 (279)
Q Consensus 114 ~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~-~~D~v~~~~vlh~~~~~ 188 (279)
..++|=+|+ =+|.+....+..+ ++++++|+ |++.+.. .+++.|... ..+.+ .+|+|+=.--|-..+++
T Consensus 42 ~k~~lI~G~YltG~~iA~~L~~~--~eV~lvDI~p~lk~ll---~~~i~F~~~--~~~~~~~~DlIID~TGlGGv~~~ 112 (252)
T PF06690_consen 42 FKQALIFGAYLTGNFIASALSKK--CEVTLVDIHPHLKELL---NENIKFMEF--RNGLEGNPDLIIDTTGLGGVDPD 112 (252)
T ss_pred cceEEEEEEEeehHHHHHHhccC--ceEEEEeCcHHHHHHh---cCCCceeec--cCCCCCCCCEEEECCCCCCCCHH
Confidence 458888884 3455554444443 38999999 6666655 367888733 22323 58999877767666664
No 427
>COG3432 Predicted transcriptional regulator [Transcription]
Probab=39.39 E-value=13 Score=25.90 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=20.3
Q ss_pred ccccccCceeecCCC---eEecChhcchh
Q 023625 2 RILVHSGFFAQQKDD---EYFLTPASRLL 27 (279)
Q Consensus 2 r~L~~~g~l~~~~~~---~y~~t~~s~~L 27 (279)
..|+..|++....++ .|.+|+.|.-|
T Consensus 53 ~~L~~~Gli~~~~~~~~~~y~lT~KG~~f 81 (95)
T COG3432 53 EMLVEKGLIIKQDNGRRKVYELTEKGKRF 81 (95)
T ss_pred HHHHhCCCEEeccCCccceEEEChhHHHH
Confidence 468899977777765 69999999733
No 428
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.21 E-value=51 Score=29.24 Aligned_cols=65 Identities=15% Similarity=0.244 Sum_probs=41.9
Q ss_pred cCCccHHHHHHHHHC---CCCeEEEeeChhHHhhcc---------------cCCCCeEEeeCCCCCCC-----------C
Q 023625 121 AGGTGIMARAIATAF---PDIKCTVFDLPHVVDNLQ---------------GTNDNLDFLGGNMFEAI-----------P 171 (279)
Q Consensus 121 G~G~G~~~~~l~~~~---p~~~~~~~D~~~~~~~a~---------------~~~~ri~~~~~d~~~~~-----------~ 171 (279)
=|+||.++..++... ++.+++++=....-+.|. ...+||+.+.||..+|. .
T Consensus 6 TGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~~~~La 85 (382)
T COG3320 6 TGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERTWQELA 85 (382)
T ss_pred ecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHHHHHHh
Confidence 478999887666644 446777764422222211 13689999999998752 1
Q ss_pred -ccceeeehhhhccC
Q 023625 172 -QANAVLLKWILHNW 185 (279)
Q Consensus 172 -~~D~v~~~~vlh~~ 185 (279)
+.|.|+=+..+++|
T Consensus 86 ~~vD~I~H~gA~Vn~ 100 (382)
T COG3320 86 ENVDLIIHNAALVNH 100 (382)
T ss_pred hhcceEEecchhhcc
Confidence 37888877766654
No 429
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=38.19 E-value=3.7e+02 Score=26.10 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=30.8
Q ss_pred cCCeeCCHHHHHHHHHHCCCceeEEEecCCce----eEEEEeC
Q 023625 241 FRGKERSVDDWKKLFLAAGFSHYKITPMLGVR----SLIEAYP 279 (279)
Q Consensus 241 ~~~~~r~~~e~~~ll~~aGf~~~~~~~~~~~~----~~i~~~~ 279 (279)
.-|...+.+++...|.+.||........+|.. ++|++.|
T Consensus 159 ~~G~~i~~~~l~~~Lv~~gY~r~~~v~~~G~F~vRG~iiDIfp 201 (655)
T TIGR00631 159 EVGKEIDRRELLRRLVELQYERNDVDFQRGTFRVRGDVVEIFP 201 (655)
T ss_pred eCCCCcCHHHHHHHHHHcCCcccCccCCCceEEEECCEEEEec
Confidence 34788899999999999999988887776653 4666655
No 430
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=38.08 E-value=52 Score=25.87 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEE
Q 023625 190 SVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKIT 266 (279)
Q Consensus 190 ~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~ 266 (279)
..++.+++.+.++ ||..|++.+. +.. . ... .....+...+++.||+.+.+.
T Consensus 138 ~~~i~~~~~~~~~---~g~Iil~Hd~---~~~-~----~t~---------------~~l~~~i~~l~~~Gy~~vtl~ 188 (191)
T TIGR02764 138 VESIVDRVVKNTK---PGDIILLHAS---DSA-K----QTV---------------KALPTIIKKLKEKGYEFVTIS 188 (191)
T ss_pred HHHHHHHHHhcCC---CCCEEEEeCC---CCc-H----hHH---------------HHHHHHHHHHHHCCCEEEEHH
Confidence 3467778878888 6776666651 110 0 000 023567778888999877653
No 431
>PRK09273 hypothetical protein; Provisional
Probab=38.00 E-value=48 Score=26.81 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=30.2
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG 154 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 154 (279)
.....=++||||.=..-.+.++|++++-..--+.....+++
T Consensus 63 ~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~ 103 (211)
T PRK09273 63 AVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQ 103 (211)
T ss_pred CCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 34456678999999999999999998655544666665654
No 432
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.93 E-value=1.5e+02 Score=26.65 Aligned_cols=104 Identities=13% Similarity=0.209 Sum_probs=62.9
Q ss_pred CCCCEEEEec-CCcc--HHHHHHH----HHCCCCeEEEeeC--hhHHhhcccC--CCCeEEeeC-CCCCCC---------
Q 023625 112 EGLKSLVDVA-GGTG--IMARAIA----TAFPDIKCTVFDL--PHVVDNLQGT--NDNLDFLGG-NMFEAI--------- 170 (279)
Q Consensus 112 ~~~~~vlDvG-~G~G--~~~~~l~----~~~p~~~~~~~D~--~~~~~~a~~~--~~ri~~~~~-d~~~~~--------- 170 (279)
.....|+=|| -|+| ..+..++ ++.-.+-.++-|. +.+.++.++. ..+|.|... +-.+|.
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~ 178 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDR 178 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHH
Confidence 3445666665 2333 3333333 3333444666675 6666655542 356666543 222232
Q ss_pred ---CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 171 ---PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 171 ---~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
.+||+|+.--.=.|..+...-.-++.+.++++ |+-.|+|+|....
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~---Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIK---PDEIIFVMDASIG 226 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcC---CCeEEEEEecccc
Confidence 24999998665555566667788899999999 7999999986543
No 433
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=37.93 E-value=2.2e+02 Score=24.02 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=45.3
Q ss_pred EEEEecCCc-cH-HHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCC------CC---CCCccceeeehhhhc
Q 023625 116 SLVDVAGGT-GI-MARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNM------FE---AIPQANAVLLKWILH 183 (279)
Q Consensus 116 ~vlDvG~G~-G~-~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~------~~---~~~~~D~v~~~~vlh 183 (279)
+|+=||+|. |. ++..|++. +.++++++. ++.++..+...-.+. .++. .. +...+|+|++.--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~d~vila~k-- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRLE--DGEITVPVLAADDPAELGPQDLVILAVK-- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCccc--CCceeecccCCCChhHcCCCCEEEEecc--
Confidence 466777654 22 23333332 457888887 655554443211110 1111 11 1235898887532
Q ss_pred cCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 184 NWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 184 ~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
..+...+++.+.+.+. ++..++...
T Consensus 76 ---~~~~~~~~~~l~~~l~---~~~~iv~~~ 100 (304)
T PRK06522 76 ---AYQLPAALPSLAPLLG---PDTPVLFLQ 100 (304)
T ss_pred ---cccHHHHHHHHhhhcC---CCCEEEEec
Confidence 2345677888888787 455555443
No 434
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=37.82 E-value=2.7e+02 Score=24.34 Aligned_cols=93 Identities=17% Similarity=0.117 Sum_probs=51.9
Q ss_pred hCCCCEEEEecC-CccHHHHHHHHHCCCC-eEEEeeC-hhHHhhcccCCCCeEEee--CCCCCC----CC-ccceeeehh
Q 023625 111 FEGLKSLVDVAG-GTGIMARAIATAFPDI-KCTVFDL-PHVVDNLQGTNDNLDFLG--GNMFEA----IP-QANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~-G~G~~~~~l~~~~p~~-~~~~~D~-~~~~~~a~~~~~ri~~~~--~d~~~~----~~-~~D~v~~~~ 180 (279)
..+..+||=.|+ +.|..+..+++.. +. ++++.|. +.-.+.+++......+.. .|+.+. .+ ++|+++-.-
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~-G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~ 267 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAA-GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMA 267 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECC
Confidence 344566666775 4466677777765 45 5888887 666666665422111111 111110 11 478776431
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.. ...+....++++ ++|+++++..
T Consensus 268 -----G~---~~~~~~~~~~l~---~~G~iv~~G~ 291 (371)
T cd08281 268 -----GS---VPALETAYEITR---RGGTTVTAGL 291 (371)
T ss_pred -----CC---hHHHHHHHHHHh---cCCEEEEEcc
Confidence 11 134666677888 7999988764
No 435
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=37.30 E-value=2.4e+02 Score=24.50 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=70.9
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC-C---CC--ccceeeehhhhccCC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-A---IP--QANAVLLKWILHNWN 186 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-~---~~--~~D~v~~~~vlh~~~ 186 (279)
.-+++|+=||.|.+...+.++.-+ -+...|+ +..++.-+..-....++..|..+ . .+ .+|+++.......++
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~-~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFE-IVFANEIDPPAVATYKANFPHGDIILGDIKELDGEALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCe-EEEEEecCHHHHHHHHHhCCCCceeechHhhcChhhccccCCCEEEeCCCCcchh
Confidence 357899999999999988887632 2445576 66665544321224555566553 1 12 467777655544443
Q ss_pred hh--------HHHHH---HHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHH
Q 023625 187 DE--------ESVKL---LKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLF 255 (279)
Q Consensus 187 ~~--------~~~~~---L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll 255 (279)
-. ..-.+ +.++...++ | +++|+|.+-.= +.. +..+.++|.+.|
T Consensus 82 ~aG~r~~~~D~R~~L~~~~~r~I~~~~---P--~~fv~ENV~gl------------------~~~---~~~~~~~i~~~L 135 (328)
T COG0270 82 IAGKRRGYDDPRGSLFLEFIRLIEQLR---P--KFFVLENVKGL------------------LSS---KGQTFDEIKKEL 135 (328)
T ss_pred hcCcccCCcCccceeeHHHHHHHHhhC---C--CEEEEecCchH------------------Hhc---CchHHHHHHHHH
Confidence 21 12222 333444445 4 67777765321 000 334788999999
Q ss_pred HHCCCc
Q 023625 256 LAAGFS 261 (279)
Q Consensus 256 ~~aGf~ 261 (279)
++.||.
T Consensus 136 ~~~GY~ 141 (328)
T COG0270 136 EELGYG 141 (328)
T ss_pred HHcCCc
Confidence 999996
No 436
>PRK13699 putative methylase; Provisional
Probab=37.18 E-value=1.3e+02 Score=24.55 Aligned_cols=20 Identities=0% Similarity=-0.041 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCCCCCCcEEEE
Q 023625 190 SVKLLKKCKEAIPSKDEGGKVII 212 (279)
Q Consensus 190 ~~~~L~~~~~~L~~~~pgG~lli 212 (279)
....+++++++|+ |||.+++
T Consensus 51 ~~~~l~E~~RVLK---pgg~l~i 70 (227)
T PRK13699 51 LQPACNEMYRVLK---KDALMVS 70 (227)
T ss_pred HHHHHHHHHHHcC---CCCEEEE
Confidence 4578999999999 7887765
No 437
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=37.04 E-value=80 Score=30.46 Aligned_cols=40 Identities=10% Similarity=0.179 Sum_probs=30.7
Q ss_pred hHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCCCCeEE
Q 023625 99 IAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFPDIKCT 141 (279)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~ 141 (279)
..+.++..+. .. ..-.|-+|=|+|..+..+++.||..+++
T Consensus 311 KlRsIL~~~~--i~-~~d~l~~GDGSGGita~lLR~~p~sr~i 350 (675)
T PF14314_consen 311 KLRSILKNLN--IK-YRDALCGGDGSGGITACLLRMNPTSRGI 350 (675)
T ss_pred hHHHHHHhcC--CC-cceeEEEecCchHHHHHHHHhCccccee
Confidence 3455666554 22 3556889999999999999999999876
No 438
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=37.03 E-value=1.8e+02 Score=23.47 Aligned_cols=27 Identities=19% Similarity=0.309 Sum_probs=18.1
Q ss_pred CccceeeehhhhccCChhHHHHHHHHHHHhCC
Q 023625 171 PQANAVLLKWILHNWNDEESVKLLKKCKEAIP 202 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~ 202 (279)
..+|+|++.- +++....+++.+...++
T Consensus 67 ~~aDvVilav-----p~~~~~~~l~~l~~~l~ 93 (219)
T TIGR01915 67 KRADVVILAV-----PWDHVLKTLESLRDELS 93 (219)
T ss_pred hcCCEEEEEC-----CHHHHHHHHHHHHHhcc
Confidence 3589888753 45556677777766665
No 439
>PLN02712 arogenate dehydrogenase
Probab=36.80 E-value=1.7e+02 Score=28.43 Aligned_cols=79 Identities=9% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCEEEEecCCc--cHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC-CccceeeehhhhccCChhHH
Q 023625 114 LKSLVDVAGGT--GIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI-PQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 114 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~-~~~D~v~~~~vlh~~~~~~~ 190 (279)
..+|.=||+|. |.++..+.+. +.+++++|.....+.++.. .+.+ ..|..+-. ..+|+|+++- +++..
T Consensus 52 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~A~~~--Gv~~-~~d~~e~~~~~aDvViLav-----P~~~~ 121 (667)
T PLN02712 52 QLKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHSLAARSL--GVSF-FLDPHDLCERHPDVILLCT-----SIIST 121 (667)
T ss_pred CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHc--CCEE-eCCHHHHhhcCCCEEEEcC-----CHHHH
Confidence 45788898764 4444444443 3578888875444444433 2322 22222111 2479998853 55666
Q ss_pred HHHHHHHH-HhCC
Q 023625 191 VKLLKKCK-EAIP 202 (279)
Q Consensus 191 ~~~L~~~~-~~L~ 202 (279)
..+++.+. ..++
T Consensus 122 ~~vl~~l~~~~l~ 134 (667)
T PLN02712 122 ENVLKSLPLQRLK 134 (667)
T ss_pred HHHHHhhhhhcCC
Confidence 77888775 5577
No 440
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=36.67 E-value=2e+02 Score=23.11 Aligned_cols=88 Identities=15% Similarity=0.160 Sum_probs=48.2
Q ss_pred CCccHHHHHHHHHC--CCCeEEEeeChhHHhhcccCCCCeEEeeCCCCCCC------CccceeeehhhhccCCh--hHHH
Q 023625 122 GGTGIMARAIATAF--PDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMFEAI------PQANAVLLKWILHNWND--EESV 191 (279)
Q Consensus 122 ~G~G~~~~~l~~~~--p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~~~~------~~~D~v~~~~vlh~~~~--~~~~ 191 (279)
|.+|..+..+++.- .+..+|.+=....--.++ ..+..+..|++++. .++|+|+...-.. +++ +...
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~-~~~~~~~~~ 82 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG-ASDNDELHS 82 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEeccCC-CCChhHHHH
Confidence 66788877777653 233455544321111111 56888999999842 2699999864332 133 2334
Q ss_pred HHHHHHHHhCCCCCCCcEEEEEe
Q 023625 192 KLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~lli~e 214 (279)
+....+...|+.- .--+++|+.
T Consensus 83 k~~~~li~~l~~a-gv~RllVVG 104 (211)
T COG2910 83 KSIEALIEALKGA-GVPRLLVVG 104 (211)
T ss_pred HHHHHHHHHHhhc-CCeeEEEEc
Confidence 4455566666510 124677664
No 441
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=36.58 E-value=1.2e+02 Score=25.61 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=37.0
Q ss_pred CccHHHHHHHHHC--CCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCCh-hHHHHHH---H
Q 023625 123 GTGIMARAIATAF--PDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWND-EESVKLL---K 195 (279)
Q Consensus 123 G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~-~~~~~~L---~ 195 (279)
|.|..+..+++.. .+.+++++|. ++.++...+. .+.. ..+..+-..+.|+|++.- ++ ++...++ .
T Consensus 3 GlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~--g~~~-~~s~~~~~~~advVil~v-----p~~~~~~~v~~g~~ 74 (288)
T TIGR01692 3 GLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAA--GAQA-AASPAEAAEGADRVITML-----PAGQHVISVYSGDE 74 (288)
T ss_pred cccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHc--CCee-cCCHHHHHhcCCEEEEeC-----CChHHHHHHHcCcc
Confidence 4455555554443 2357889998 5555554432 1111 111111123478888742 33 4455666 5
Q ss_pred HHHHhCC
Q 023625 196 KCKEAIP 202 (279)
Q Consensus 196 ~~~~~L~ 202 (279)
.+...++
T Consensus 75 ~l~~~~~ 81 (288)
T TIGR01692 75 GILPKVA 81 (288)
T ss_pred hHhhcCC
Confidence 6666776
No 442
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=36.54 E-value=1.3e+02 Score=25.46 Aligned_cols=81 Identities=11% Similarity=0.185 Sum_probs=41.2
Q ss_pred EEEEecCCc--cHHHHHHHHHC--CCCeEEEeeC-h-hHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhH
Q 023625 116 SLVDVAGGT--GIMARAIATAF--PDIKCTVFDL-P-HVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEE 189 (279)
Q Consensus 116 ~vlDvG~G~--G~~~~~l~~~~--p~~~~~~~D~-~-~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~ 189 (279)
+|.=||||. +.++..+.+.. +..++++.+. + ...+........+.. ..|..+....+|+|++. .+++.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~-~~~~~e~~~~aDvVila-----vpp~~ 76 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL-ADNEAEIFTKCDHSFIC-----VPPLA 76 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE-eCCHHHHHhhCCEEEEe-----cCHHH
Confidence 456677665 33444444432 1245777775 3 222222111111221 22221112358988864 35666
Q ss_pred HHHHHHHHHHhCC
Q 023625 190 SVKLLKKCKEAIP 202 (279)
Q Consensus 190 ~~~~L~~~~~~L~ 202 (279)
...+++++.+.++
T Consensus 77 ~~~vl~~l~~~l~ 89 (277)
T PRK06928 77 VLPLLKDCAPVLT 89 (277)
T ss_pred HHHHHHHHHhhcC
Confidence 7888999988887
No 443
>PRK08655 prephenate dehydrogenase; Provisional
Probab=35.62 E-value=1.6e+02 Score=26.85 Aligned_cols=82 Identities=13% Similarity=0.226 Sum_probs=42.6
Q ss_pred EEEEec--CCccHHHHHHHHHCCCCeEEEeeC-hhHH-hhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHH
Q 023625 116 SLVDVA--GGTGIMARAIATAFPDIKCTVFDL-PHVV-DNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESV 191 (279)
Q Consensus 116 ~vlDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~-~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~ 191 (279)
+|.=|| |+-|......+.. .+.+++++|. ++.. +.+.+. .+.+ ..+..+....+|+|++.- +.+...
T Consensus 2 kI~IIGG~G~mG~slA~~L~~-~G~~V~v~~r~~~~~~~~a~~~--gv~~-~~~~~e~~~~aDvVIlav-----p~~~~~ 72 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKE-KGFEVIVTGRDPKKGKEVAKEL--GVEY-ANDNIDAAKDADIVIISV-----PINVTE 72 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHH-CCCEEEEEECChHHHHHHHHHc--CCee-ccCHHHHhccCCEEEEec-----CHHHHH
Confidence 456676 2244433222222 2347888887 4443 333332 2221 112212234589988854 445556
Q ss_pred HHHHHHHHhCCCCCCCcE
Q 023625 192 KLLKKCKEAIPSKDEGGK 209 (279)
Q Consensus 192 ~~L~~~~~~L~~~~pgG~ 209 (279)
.+++++.+.++ ||..
T Consensus 73 ~vl~~l~~~l~---~~~i 87 (437)
T PRK08655 73 DVIKEVAPHVK---EGSL 87 (437)
T ss_pred HHHHHHHhhCC---CCCE
Confidence 78888888888 4553
No 444
>PRK10637 cysG siroheme synthase; Provisional
Probab=34.96 E-value=1.8e+02 Score=26.73 Aligned_cols=63 Identities=16% Similarity=0.156 Sum_probs=40.3
Q ss_pred CCCEEEEecCCccHHHH--HHHHHCCCCeEEEe--eC-hhHHhhcccCCCCeEEeeCCCCC-CCCccceeeeh
Q 023625 113 GLKSLVDVAGGTGIMAR--AIATAFPDIKCTVF--DL-PHVVDNLQGTNDNLDFLGGNMFE-AIPQANAVLLK 179 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~--D~-~~~~~~a~~~~~ri~~~~~d~~~-~~~~~D~v~~~ 179 (279)
.+++||=||||.=..-. .|++. +++++++ +. ++..+.+. ..+++++..++.. +..++++|+..
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~--ga~v~visp~~~~~~~~l~~--~~~i~~~~~~~~~~dl~~~~lv~~a 79 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDA--GARLTVNALAFIPQFTAWAD--AGMLTLVEGPFDESLLDTCWLAIAA 79 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHh--CCCEEEEeCCCChHHhCCCEEEEEC
Confidence 46899999999876543 34443 4455554 44 33333222 3689999988876 46678887764
No 445
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=34.86 E-value=2.9e+02 Score=23.60 Aligned_cols=93 Identities=14% Similarity=0.213 Sum_probs=50.5
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCC-CC-eEEeeCCCCC------CCCccceeeehh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTN-DN-LDFLGGNMFE------AIPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~-~r-i~~~~~d~~~------~~~~~D~v~~~~ 180 (279)
..+..+||-.|+| .|..+..++++....++++.+. +...+.+++.. +. +.....++.+ +..++|+++-..
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~~~~~~~d~vld~~ 244 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILELTGGRGVDCVIEAV 244 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHHcCCCCCcEEEEcc
Confidence 3456677776664 4777788888765336666665 44444444331 11 1111111111 112478777531
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.. ...+....+.|+ ++|+++.+.
T Consensus 245 -----g~---~~~~~~~~~~l~---~~G~~v~~g 267 (347)
T cd05278 245 -----GF---EETFEQAVKVVR---PGGTIANVG 267 (347)
T ss_pred -----CC---HHHHHHHHHHhh---cCCEEEEEc
Confidence 11 135777778888 699988664
No 446
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=33.94 E-value=1.2e+02 Score=25.38 Aligned_cols=77 Identities=13% Similarity=0.233 Sum_probs=37.1
Q ss_pred CeEEEeeC-hhHHhhccc-------CCCCeEEe-eCCCCCCCCccceeeehhhhccCC-------hhHHHHHHHHHHHhC
Q 023625 138 IKCTVFDL-PHVVDNLQG-------TNDNLDFL-GGNMFEAIPQANAVLLKWILHNWN-------DEESVKLLKKCKEAI 201 (279)
Q Consensus 138 ~~~~~~D~-~~~~~~a~~-------~~~ri~~~-~~d~~~~~~~~D~v~~~~vlh~~~-------~~~~~~~L~~~~~~L 201 (279)
.+++.+|. ++.++.... .....++. ..|..+...++|+|+...-.-..+ -.....+++++.+.+
T Consensus 27 ~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i 106 (263)
T cd00650 27 IELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNI 106 (263)
T ss_pred eEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHH
Confidence 57888997 322222111 11123333 233334456799998833110000 012345555555555
Q ss_pred CCCCCCcEEEEEe
Q 023625 202 PSKDEGGKVIIID 214 (279)
Q Consensus 202 ~~~~pgG~lli~e 214 (279)
+...|+++++++.
T Consensus 107 ~~~~p~a~~i~~t 119 (263)
T cd00650 107 EKYSPDAWIIVVS 119 (263)
T ss_pred HHHCCCeEEEEec
Confidence 4323689888764
No 447
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=33.91 E-value=1.1e+02 Score=26.56 Aligned_cols=47 Identities=19% Similarity=0.277 Sum_probs=25.5
Q ss_pred CCCccceeeehhhhccCCh---h----HHHHHHHHHHHhCCCC-CCCcEEEEEee
Q 023625 169 AIPQANAVLLKWILHNWND---E----ESVKLLKKCKEAIPSK-DEGGKVIIIDM 215 (279)
Q Consensus 169 ~~~~~D~v~~~~vlh~~~~---~----~~~~~L~~~~~~L~~~-~pgG~lli~e~ 215 (279)
...++|+|+...-...-+. . ...++++++.+.++.+ .|++.++++..
T Consensus 75 ~l~~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 75 AFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred HhCCCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 3456898876543322111 1 2345556665555433 26888887663
No 448
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=33.88 E-value=1.9e+02 Score=24.25 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=43.6
Q ss_pred CEEEEecCCc--cHHHHHHHHHC--CCCeEEEeeC-h-hHHhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChh
Q 023625 115 KSLVDVAGGT--GIMARAIATAF--PDIKCTVFDL-P-HVVDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDE 188 (279)
Q Consensus 115 ~~vlDvG~G~--G~~~~~l~~~~--p~~~~~~~D~-~-~~~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~ 188 (279)
.+|.=||+|. +.++..++++. +..++++.|. + ...+..... ..++.. .|..+....+|+|++. .+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~-~g~~~~-~~~~e~~~~aDvVila-----v~p~ 76 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK-YGVKGT-HNKKELLTDANILFLA-----MKPK 76 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh-cCceEe-CCHHHHHhcCCEEEEE-----eCHH
Confidence 3677777653 23333444432 2246788886 3 233332221 123322 2221112358988874 4677
Q ss_pred HHHHHHHHHHHhCC
Q 023625 189 ESVKLLKKCKEAIP 202 (279)
Q Consensus 189 ~~~~~L~~~~~~L~ 202 (279)
+...+++.+...++
T Consensus 77 ~~~~vl~~l~~~~~ 90 (279)
T PRK07679 77 DVAEALIPFKEYIH 90 (279)
T ss_pred HHHHHHHHHHhhcC
Confidence 78888899988887
No 449
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=33.69 E-value=91 Score=31.91 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=43.1
Q ss_pred CCCEEEEecCCc-cHHHHHHHHHCCCCe-------------EEEeeC-hhHHhhcccCCCCeEEeeCCCCCC------CC
Q 023625 113 GLKSLVDVAGGT-GIMARAIATAFPDIK-------------CTVFDL-PHVVDNLQGTNDNLDFLGGNMFEA------IP 171 (279)
Q Consensus 113 ~~~~vlDvG~G~-G~~~~~l~~~~p~~~-------------~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~~------~~ 171 (279)
+.++|+=||+|. |......+.+.|+.+ +++.|. +...+.+.+..++++.+..|+.+. ..
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 356899999984 777777777777765 888887 444443332224666677766541 13
Q ss_pred ccceeeehh
Q 023625 172 QANAVLLKW 180 (279)
Q Consensus 172 ~~D~v~~~~ 180 (279)
+.|+|++.-
T Consensus 648 ~~DaVIsal 656 (1042)
T PLN02819 648 QVDVVISLL 656 (1042)
T ss_pred CCCEEEECC
Confidence 478877643
No 450
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=33.60 E-value=97 Score=28.74 Aligned_cols=42 Identities=21% Similarity=0.117 Sum_probs=31.8
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCC----CCeEEEeeC-hhHHhhcc
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFP----DIKCTVFDL-PHVVDNLQ 153 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-~~~~~~a~ 153 (279)
.+..+|.|--||+|.+.....+... ++...+++. +.+...++
T Consensus 185 ~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~ 231 (489)
T COG0286 185 EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAK 231 (489)
T ss_pred CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHH
Confidence 3566999999999998877666542 377899997 66666665
No 451
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=33.23 E-value=1.8e+02 Score=26.42 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=35.8
Q ss_pred EEEEecCCccHHHHHHHHH----C---CCCeEEEeeChh--HHhh----cc----cCCCCeEEeeC-CCCCCCCccceee
Q 023625 116 SLVDVAGGTGIMARAIATA----F---PDIKCTVFDLPH--VVDN----LQ----GTNDNLDFLGG-NMFEAIPQANAVL 177 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~----~---p~~~~~~~D~~~--~~~~----a~----~~~~ri~~~~~-d~~~~~~~~D~v~ 177 (279)
+|.=||+|+. ++..+.+. . +..+++.+|+.+ -++. ++ .....+++... |..+...++|.|+
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 2 KLTIIGGGSS-YTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred EEEEECCchH-hHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 6778999996 77666554 3 445688989862 2211 11 12234555433 4333456677776
Q ss_pred eh
Q 023625 178 LK 179 (279)
Q Consensus 178 ~~ 179 (279)
..
T Consensus 81 ~~ 82 (419)
T cd05296 81 TQ 82 (419)
T ss_pred EE
Confidence 53
No 452
>PF05772 NinB: NinB protein; InterPro: IPR008711 The ninR region of Bacteriophage lambda contains two recombination genes, orf (ninB) and rap (ninG), that have roles when the RecF and RecBCD recombination pathways of Escherichia coli, respectively, operate on phage lambda []. Genetic recombination in phage lambda relies on DNA end processing by Exo to expose 3'-tailed strands for annealing and exchange by beta protein. Phage lambda encodes an additional recombinase, NinB (Orf), which participates in the early stages of recombination by supplying a function equivalent to the E. coli RecFOR complex. These host enzymes assist loading of the RecA strand exchange protein onto ssDNA coated with ssDNA-binding protein. NinB has two structural domains with unusual folds, and exists as an intertwined dimer [].; PDB: 1PC6_B.
Probab=33.17 E-value=69 Score=23.70 Aligned_cols=28 Identities=36% Similarity=0.561 Sum_probs=17.9
Q ss_pred hhcchhhhhhcCCeeCCHHHHHHHHHHC
Q 023625 231 LCFDILMVSLFRGKERSVDDWKKLFLAA 258 (279)
Q Consensus 231 ~~~d~~~~~~~~~~~r~~~e~~~ll~~a 258 (279)
.+.|+.-.+..+|+.++.++|+++|..+
T Consensus 46 ~l~dIs~qv~~~G~k~~~e~WK~~~~~~ 73 (127)
T PF05772_consen 46 MLGDISRQVEWNGRKLDPEDWKELFTAA 73 (127)
T ss_dssp HHHHHHHH--BTTB---HHHHHHHHHHH
T ss_pred HHHHHHHHhHhcCccCCHHHHHHHHHHH
Confidence 3556666666679999999999999875
No 453
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=33.01 E-value=3.1e+02 Score=23.33 Aligned_cols=92 Identities=14% Similarity=0.087 Sum_probs=54.6
Q ss_pred hCCCCEEEEec--CCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeC--CCCC----CC--Cccceeeeh
Q 023625 111 FEGLKSLVDVA--GGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGG--NMFE----AI--PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG--~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~--d~~~----~~--~~~D~v~~~ 179 (279)
..+..+||=.| +|.|..+..+++.. +.++++.+. ++-.+.+++.....-+-.. +... .. .++|+++-.
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~ 214 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDN 214 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEEC
Confidence 45567888777 67888998898875 567777775 5556666554221111111 1111 01 147777642
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
- .. ..+....+.++ ++|+++.+..
T Consensus 215 ~-----G~----~~~~~~~~~l~---~~G~iv~~G~ 238 (325)
T TIGR02825 215 V-----GG----EFSNTVIGQMK---KFGRIAICGA 238 (325)
T ss_pred C-----CH----HHHHHHHHHhC---cCcEEEEecc
Confidence 1 22 23466778888 7999998754
No 454
>cd01093 CRIB_PAK_like PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway. This subgroup of CRIB/PBD-domains is found N-terminal of Serine/Threonine kinase domains in PAK and PAK-like proteins.
Probab=32.98 E-value=21 Score=21.08 Aligned_cols=18 Identities=17% Similarity=0.634 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHCCCceeE
Q 023625 247 SVDDWKKLFLAAGFSHYK 264 (279)
Q Consensus 247 ~~~e~~~ll~~aGf~~~~ 264 (279)
-+.||.++|..+|.+..+
T Consensus 27 lP~eW~~ll~~sgis~~e 44 (46)
T cd01093 27 LPEEWQRLLKSSGITKEE 44 (46)
T ss_pred CCHHHHHHHHHcCCCHHH
Confidence 468999999999987654
No 455
>PF11253 DUF3052: Protein of unknown function (DUF3052); InterPro: IPR021412 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=32.91 E-value=2e+02 Score=21.23 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=49.4
Q ss_pred cceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHH
Q 023625 173 ANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWK 252 (279)
Q Consensus 173 ~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~ 252 (279)
.|++++-+- -.|.+....|-.+...|. .+|.|.++.+...... ..++.++.
T Consensus 46 vD~vllWwR---~~DgDL~D~LvDa~~~L~---d~G~IWvltPK~gr~g-----------------------~V~~~~I~ 96 (127)
T PF11253_consen 46 VDVVLLWWR---DDDGDLVDALVDARTNLA---DDGVIWVLTPKAGRPG-----------------------HVEPSDIR 96 (127)
T ss_pred ccEEEEEEE---CCcchHHHHHHHHHhhhc---CCCEEEEEccCCCCCC-----------------------CCCHHHHH
Confidence 788776432 245577888888889998 6999998775432211 12678899
Q ss_pred HHHHHCCCceeEEEecCC
Q 023625 253 KLFLAAGFSHYKITPMLG 270 (279)
Q Consensus 253 ~ll~~aGf~~~~~~~~~~ 270 (279)
+....+|+.......+..
T Consensus 97 eaA~taGL~~t~~~~v~~ 114 (127)
T PF11253_consen 97 EAAPTAGLVQTKSCAVGD 114 (127)
T ss_pred HHHhhcCCeeeeeeccCC
Confidence 999999999888777654
No 456
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=32.77 E-value=3.7e+02 Score=24.25 Aligned_cols=98 Identities=15% Similarity=0.150 Sum_probs=49.6
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEee-------------CCC--CCCCCccceeee
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLG-------------GNM--FEAIPQANAVLL 178 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~-------------~d~--~~~~~~~D~v~~ 178 (279)
.+|.=||.|.-....+.+-+..+.+++++|. ++.++..+.. ++.+.. |.+ .++...+|+|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g--~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRG--EIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLI 81 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCC--CCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEE
Confidence 4677777775443333322223467999998 6666653311 111100 100 011235788877
Q ss_pred hhhhc-----cCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecC
Q 023625 179 KWILH-----NWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIE 218 (279)
Q Consensus 179 ~~vlh-----~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~ 218 (279)
+---- ...-......++.+.+.++ + |.++|.+...+
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~---~-g~iVI~~STv~ 122 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLK---K-GDLVILESTSP 122 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCC---C-CCEEEEeCCCC
Confidence 43210 0001355667788888888 3 55666554433
No 457
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=32.63 E-value=80 Score=28.34 Aligned_cols=52 Identities=15% Similarity=0.237 Sum_probs=36.1
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-CCCCeEEeeCCC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-TNDNLDFLGGNM 166 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-~~~ri~~~~~d~ 166 (279)
..|+-||+|...+..+......+.+++++|- +..-++..- -..|+.|.....
T Consensus 4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~ 57 (408)
T COG2081 4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA 57 (408)
T ss_pred ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCcccccccc
Confidence 4678899998888777777778889999997 555444332 235666655443
No 458
>PLN02427 UDP-apiose/xylose synthase
Probab=32.61 E-value=1e+02 Score=27.28 Aligned_cols=64 Identities=13% Similarity=0.207 Sum_probs=41.0
Q ss_pred CEEEEecCCccHHHHHHHHHCC---CCeEEEeeC-hhHHhhccc-----CCCCeEEeeCCCCCC--C----Cccceeeeh
Q 023625 115 KSLVDVAGGTGIMARAIATAFP---DIKCTVFDL-PHVVDNLQG-----TNDNLDFLGGNMFEA--I----PQANAVLLK 179 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-~~~~~~a~~-----~~~ri~~~~~d~~~~--~----~~~D~v~~~ 179 (279)
.+|| |=||+|..+..++++.- ..+++++|. +.-...... ...+++++.+|+.++ + .++|+|+-.
T Consensus 15 ~~Vl-VTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHl 93 (386)
T PLN02427 15 LTIC-MIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINL 93 (386)
T ss_pred cEEE-EECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEc
Confidence 4666 66789999888888663 357888886 332222111 124799999999763 1 247877643
No 459
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=32.56 E-value=1.2e+02 Score=26.26 Aligned_cols=62 Identities=19% Similarity=0.366 Sum_probs=38.5
Q ss_pred HHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEecCCccHHHHHHHHHCC--CCeEEEeeChhH
Q 023625 86 SLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDVAGGTGIMARAIATAFP--DIKCTVFDLPHV 148 (279)
Q Consensus 86 ~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~~~~ 148 (279)
......+..........+.+.+. .+....+|+=+|||.-.+..++.+.+| +.++++.|-|+.
T Consensus 246 ~~v~~~i~~~~~~l~~~i~~~~~-~~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pqf 309 (318)
T PF06406_consen 246 DDVSEVIEEAVEELINRILRELG-DFSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQF 309 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-TS-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-hhccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCchh
Confidence 33444444444333444555443 245567899999999999999999976 567888886654
No 460
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=32.27 E-value=3.1e+02 Score=23.22 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=51.4
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCe-EEEeeC-hhHHhhcccCCCCeEEeeCCCCC-------CCCccceeeehh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIK-CTVFDL-PHVVDNLQGTNDNLDFLGGNMFE-------AIPQANAVLLKW 180 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~-~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~-------~~~~~D~v~~~~ 180 (279)
+.+..+|+-+|+| .|..+..+++... ++ +++.+. ++..+.+++.... .++..+-.. +..++|+++-..
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G-~~~v~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~vd~v~~~~ 234 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNG-ASRVTVAEPNEEKLELAKKLGAT-ETVDPSREDPEAQKEDNPYGFDVVIEAT 234 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEECCCHHHHHHHHHhCCe-EEecCCCCCHHHHHHhcCCCCcEEEECC
Confidence 4556788888765 3667777777753 44 666765 5555555432111 122111110 112478887531
Q ss_pred hhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEee
Q 023625 181 ILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDM 215 (279)
Q Consensus 181 vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~ 215 (279)
.. ...+..+.+.|+ ++|+++.+..
T Consensus 235 -----~~---~~~~~~~~~~l~---~~G~~v~~g~ 258 (334)
T cd08234 235 -----GV---PKTLEQAIEYAR---RGGTVLVFGV 258 (334)
T ss_pred -----CC---hHHHHHHHHHHh---cCCEEEEEec
Confidence 11 134666777888 6999887654
No 461
>PRK08163 salicylate hydroxylase; Provisional
Probab=32.22 E-value=65 Score=28.47 Aligned_cols=32 Identities=31% Similarity=0.448 Sum_probs=28.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
..+|+=||+|.+.++.+++-+..+.+++++|.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 46899999999999998888888899999986
No 462
>PRK06475 salicylate hydroxylase; Provisional
Probab=32.17 E-value=55 Score=29.17 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=27.5
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
.+|+=||||.+.++.+++-+..+.+++++|.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 5799999999999998888778889999986
No 463
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=31.99 E-value=60 Score=24.46 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=31.1
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccC-CCCeEEeeCCC
Q 023625 118 VDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGT-NDNLDFLGGNM 166 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~-~~ri~~~~~d~ 166 (279)
-=+.||||.=..-.+.++|++++...--+.....+++. ..++-.+.+.+
T Consensus 60 GIliCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~~~ 109 (140)
T PF02502_consen 60 GILICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHNDANVLCLGARV 109 (140)
T ss_dssp EEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--SEEEEETTT
T ss_pred EEEEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhcCCcEEEechhh
Confidence 44568888888888999999997777667777777753 23454444443
No 464
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=31.97 E-value=1.2e+02 Score=23.86 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=30.6
Q ss_pred HhCCCCCCCcEEEEEeeecCCCCCCchhhhhhhhcchhhhhhcCCeeCCHHHHHHHHHHCCCceeEEEe
Q 023625 199 EAIPSKDEGGKVIIIDMAIENQSQDKESMETQLCFDILMVSLFRGKERSVDDWKKLFLAAGFSHYKITP 267 (279)
Q Consensus 199 ~~L~~~~pgG~lli~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~r~~~e~~~ll~~aGf~~~~~~~ 267 (279)
++++ +|-+++|+|-++.... |.....+|++++|..++.+..
T Consensus 111 ~~l~---~G~rVlIVDDllaTGg-------------------------T~~a~~~Ll~~~ga~vvg~~~ 151 (179)
T COG0503 111 DALK---PGDRVLIVDDLLATGG-------------------------TALALIELLEQAGAEVVGAAF 151 (179)
T ss_pred hhCC---CCCEEEEEecchhcCh-------------------------HHHHHHHHHHHCCCEEEEEEE
Confidence 4567 6999999997765422 566788999999998877643
No 465
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=31.90 E-value=3.4e+02 Score=23.44 Aligned_cols=85 Identities=16% Similarity=0.241 Sum_probs=43.5
Q ss_pred EEEEecCCc-c-HHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCe--------EEe------eCCCCCCCCccceeeeh
Q 023625 116 SLVDVAGGT-G-IMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNL--------DFL------GGNMFEAIPQANAVLLK 179 (279)
Q Consensus 116 ~vlDvG~G~-G-~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri--------~~~------~~d~~~~~~~~D~v~~~ 179 (279)
+|.=||+|. | .++..++++ +.+++++|.++..+..++..-.+ ... ..+. +....+|+|++.
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA--GADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 577777773 3 333344343 45788899854334333211111 100 1111 123358988874
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCCcEEE
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEGGKVI 211 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~ll 211 (279)
- +..+...+++.+.+.++ ++..++
T Consensus 81 v-----k~~~~~~~~~~l~~~~~---~~~iii 104 (341)
T PRK08229 81 V-----KSAATADAAAALAGHAR---PGAVVV 104 (341)
T ss_pred e-----cCcchHHHHHHHHhhCC---CCCEEE
Confidence 3 23344567788888887 455443
No 466
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=31.72 E-value=78 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=28.4
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc
Q 023625 118 VDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG 154 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 154 (279)
-=+.||||.=..-.+.++|++++...--+.....+++
T Consensus 59 GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~ 95 (144)
T TIGR00689 59 GILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQ 95 (144)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 3345899988888899999999766655777777775
No 467
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.65 E-value=3.6e+02 Score=26.25 Aligned_cols=97 Identities=20% Similarity=0.246 Sum_probs=59.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhcccCCCCeEEeeCCCC-CCC--Cccceeeehh---hhc---c
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQGTNDNLDFLGGNMF-EAI--PQANAVLLKW---ILH---N 184 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~ri~~~~~d~~-~~~--~~~D~v~~~~---vlh---~ 184 (279)
...+.-+|-|+-....+|.+.+|+.++.-+|...+++.... ...++.|.-. +|. +++.++..-+ .|+ .
T Consensus 430 s~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~~~~~---~~~IlVGTqgaepm~~g~~~lV~ildaD~~L~~pDf 506 (665)
T PRK14873 430 SDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVVDTVDA---GPALVVATPGAEPRVEGGYGAALLLDAWALLGRQDL 506 (665)
T ss_pred CCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHHHhhcc---CCCEEEECCCCcccccCCceEEEEEcchhhhcCCCc
Confidence 45688999999999999999999999999998666555432 3444444321 111 2344443221 121 1
Q ss_pred CChhHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 185 WNDEESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 185 ~~~~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
...+...+.+.++....++.+++|+++|.
T Consensus 507 RA~Er~~qll~qvagragr~~~~G~V~iq 535 (665)
T PRK14873 507 RAAEDTLRRWMAAAALVRPRADGGQVVVV 535 (665)
T ss_pred ChHHHHHHHHHHHHHhhcCCCCCCEEEEE
Confidence 23445556666665555433357888886
No 468
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=31.64 E-value=3.1e+02 Score=23.32 Aligned_cols=77 Identities=19% Similarity=0.212 Sum_probs=38.5
Q ss_pred EEEecCCc--cHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCCCCC---CCCccceeeehhhhccCChhHH
Q 023625 117 LVDVAGGT--GIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGNMFE---AIPQANAVLLKWILHNWNDEES 190 (279)
Q Consensus 117 vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d~~~---~~~~~D~v~~~~vlh~~~~~~~ 190 (279)
|-=||+|. ...+..|+++ +.+++++|. ++..+...+. .+... .+..+ ...+.|+|++.-. +++..
T Consensus 3 Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~--g~~~~-~~~~e~~~~~~~~dvvi~~v~----~~~~~ 73 (301)
T PRK09599 3 LGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE--GATGA-DSLEELVAKLPAPRVVWLMVP----AGEIT 73 (301)
T ss_pred EEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC--CCeec-CCHHHHHhhcCCCCEEEEEec----CCcHH
Confidence 44455553 2233344433 457889998 6666555432 22211 11111 1112477776321 22355
Q ss_pred HHHHHHHHHhCC
Q 023625 191 VKLLKKCKEAIP 202 (279)
Q Consensus 191 ~~~L~~~~~~L~ 202 (279)
..++..+...++
T Consensus 74 ~~v~~~l~~~l~ 85 (301)
T PRK09599 74 DATIDELAPLLS 85 (301)
T ss_pred HHHHHHHHhhCC
Confidence 677788888888
No 469
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=31.57 E-value=79 Score=23.91 Aligned_cols=37 Identities=22% Similarity=0.207 Sum_probs=28.0
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc
Q 023625 118 VDVAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG 154 (279)
Q Consensus 118 lDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 154 (279)
-=+.||||.=..-.+.++|++++...--+.....+++
T Consensus 60 GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~ 96 (143)
T TIGR01120 60 GILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRL 96 (143)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 3345899987777889999999776655777777775
No 470
>PRK06847 hypothetical protein; Provisional
Probab=31.35 E-value=68 Score=28.07 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=26.9
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
..+|+=||+|.+.++.++.-+..+++++++|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 45799999999998888777667888999986
No 471
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=30.98 E-value=3.9e+02 Score=23.87 Aligned_cols=44 Identities=20% Similarity=0.125 Sum_probs=31.0
Q ss_pred hCCCCEEEEec--CCccHHHHHHHHHCC-C-CeEEEeeC-hhHHhhccc
Q 023625 111 FEGLKSLVDVA--GGTGIMARAIATAFP-D-IKCTVFDL-PHVVDNLQG 154 (279)
Q Consensus 111 ~~~~~~vlDvG--~G~G~~~~~l~~~~p-~-~~~~~~D~-~~~~~~a~~ 154 (279)
..+..+|+=+| |+.|..+..++++.. + .++++.|. +.-++.+++
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~ 221 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQR 221 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHH
Confidence 34556777776 678888888888752 2 36888887 666666665
No 472
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=30.96 E-value=64 Score=27.86 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeee
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMA 216 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~ 216 (279)
+...+.|..+.+.|+ |||+++|+...
T Consensus 217 ~~L~~~L~~~~~~L~---~gGrl~VISfH 242 (305)
T TIGR00006 217 EELEEALQFAPNLLA---PGGRLSIISFH 242 (305)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEEecC
Confidence 356788999999999 79999998864
No 473
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=30.35 E-value=1.2e+02 Score=25.85 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=40.8
Q ss_pred CccHHHHHHHHHC--CCCeEEEeeC-hhH-HhhcccCCCCeEEeeCCCCCCCCccceeeehhhhccCChhHHHHHH---H
Q 023625 123 GTGIMARAIATAF--PDIKCTVFDL-PHV-VDNLQGTNDNLDFLGGNMFEAIPQANAVLLKWILHNWNDEESVKLL---K 195 (279)
Q Consensus 123 G~G~~~~~l~~~~--p~~~~~~~D~-~~~-~~~a~~~~~ri~~~~~d~~~~~~~~D~v~~~~vlh~~~~~~~~~~L---~ 195 (279)
|.|..+..++++. -+..++++|. ++. .+.++....+..-.+.+ ....+|+|+..- -+++++..++ .
T Consensus 7 GLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~e---aa~~aDvVitmv----~~~~~V~~V~~g~~ 79 (286)
T COG2084 7 GLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAE---AAAEADVVITML----PDDAAVRAVLFGEN 79 (286)
T ss_pred cCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHH---HHHhCCEEEEec----CCHHHHHHHHhCcc
Confidence 4555555555544 2467899998 554 44443321111000000 012478888742 2556666777 3
Q ss_pred HHHHhCCCCCCCcEEE
Q 023625 196 KCKEAIPSKDEGGKVI 211 (279)
Q Consensus 196 ~~~~~L~~~~pgG~ll 211 (279)
-+.+.++ ||..++
T Consensus 80 g~~~~~~---~G~i~I 92 (286)
T COG2084 80 GLLEGLK---PGAIVI 92 (286)
T ss_pred chhhcCC---CCCEEE
Confidence 5777777 455433
No 474
>PF09959 DUF2193: Uncharacterized protein conserved in archaea (DUF2193); InterPro: IPR018694 This family of various hypothetical archaeal proteins has no known function
Probab=30.02 E-value=2e+02 Score=25.82 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=55.2
Q ss_pred hhHHHHHHHhHhhhcCCCChhHHhhCC-Chhhhhhc-CchH---HHHHHHHhhhcchhhHHHHHHhchhhhCCCCEEEEe
Q 023625 46 LYTTAFHCLGTWLQNDDPSLFETAHGK-KVWDRVAD-EPKF---KSLFYDLMITDSELIAGIVIKDCKEVFEGLKSLVDV 120 (279)
Q Consensus 46 ~~~~~~~~l~~~l~~g~~~~~~~~~g~-~~~~~~~~-~~~~---~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~~vlDv 120 (279)
..+.....|.+.+|-.. .||-..+.. .+.|.+.+ ||.. ...|.+++.....+...+.++.|. +|-+..+|+|.
T Consensus 66 aHyeiL~~LT~tvrPeD-DPFVEhyQTP~ilEILy~eD~~F~ks~~kfi~~I~~sealIg~E~~Rryg-GFYGpTcVvDF 143 (499)
T PF09959_consen 66 AHYEILKSLTDTVRPED-DPFVEHYQTPAILEILYEEDPAFRKSVEKFIEAIGKSEALIGKESARRYG-GFYGPTCVVDF 143 (499)
T ss_pred HHHHHHHHHhcccCCCC-CchHhhccccHHHHHHHhcCHHHHHHHHHHHHHHhhhHHHhhHHHHHHhc-CccCCceeeee
Confidence 34566777888888655 566444432 33454443 4433 345666666666666677788887 57788999999
Q ss_pred cCCccHHHHHHHHH
Q 023625 121 AGGTGIMARAIATA 134 (279)
Q Consensus 121 G~G~G~~~~~l~~~ 134 (279)
.--.|..+.-+.+.
T Consensus 144 AliPGSTsNVVN~I 157 (499)
T PF09959_consen 144 ALIPGSTSNVVNQI 157 (499)
T ss_pred eecCCchHHHHHHH
Confidence 87777666555443
No 475
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=29.90 E-value=77 Score=27.29 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++..+.|..+.++|+ |||+++|+....
T Consensus 221 ~~L~~~L~~a~~~L~---~gGRl~VIsFHS 247 (314)
T COG0275 221 EELEEALEAALDLLK---PGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHHHHHhhC---CCcEEEEEEecc
Confidence 356788999999999 799999998653
No 476
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=29.88 E-value=66 Score=31.14 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCCCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 112 EGLKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
.+..+|+=||+|.+.++.+++-+..+++++++|.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 4567899999999999999988888999999987
No 477
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=29.87 E-value=3.7e+02 Score=23.28 Aligned_cols=67 Identities=12% Similarity=0.126 Sum_probs=39.4
Q ss_pred CCCEEEEecCCccHHHHHHHHHC--CCCeEEEeeC-hhHHhhc-cc--CCCCeEEeeCCCCCC------CCccceeeehh
Q 023625 113 GLKSLVDVAGGTGIMARAIATAF--PDIKCTVFDL-PHVVDNL-QG--TNDNLDFLGGNMFEA------IPQANAVLLKW 180 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-~~~~~~a-~~--~~~ri~~~~~d~~~~------~~~~D~v~~~~ 180 (279)
...+||=.| |+|..+..+++.+ .+.++++++. +...... .. ...+++++.+|+.++ ..+.|.|+-..
T Consensus 9 ~~~~vLVtG-~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 9 ATGTYCVTG-ATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 355777554 5788888777765 3457777765 3221111 11 125788999998763 12467666443
No 478
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=29.82 E-value=2.8e+02 Score=25.41 Aligned_cols=104 Identities=11% Similarity=0.018 Sum_probs=56.3
Q ss_pred hCCCCEEEEecC-Cc-cHHHHHHHHHC------CC--CeEEEeeC-hhHHh-hccc-------CCCCeEEeeCCCCCCCC
Q 023625 111 FEGLKSLVDVAG-GT-GIMARAIATAF------PD--IKCTVFDL-PHVVD-NLQG-------TNDNLDFLGGNMFEAIP 171 (279)
Q Consensus 111 ~~~~~~vlDvG~-G~-G~~~~~l~~~~------p~--~~~~~~D~-~~~~~-~a~~-------~~~ri~~~~~d~~~~~~ 171 (279)
++...+|.=||+ |. |......+-.. .+ .+.+.+|. .+.++ .+.. ...++.+..+| .+...
T Consensus 97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~-ye~~k 175 (444)
T PLN00112 97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDP-YEVFQ 175 (444)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCC-HHHhC
Confidence 455678999998 76 44333322221 02 25777786 22221 1111 11234444443 33456
Q ss_pred ccceeeehhhhccCCh-------hHHHHHHHHHHHhCCC-CCCCcEEEEEee
Q 023625 172 QANAVLLKWILHNWND-------EESVKLLKKCKEAIPS-KDEGGKVIIIDM 215 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~-------~~~~~~L~~~~~~L~~-~~pgG~lli~e~ 215 (279)
++|+|++..-.-.-+. +...++++++.+.++. .+|+++++++..
T Consensus 176 daDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN 227 (444)
T PLN00112 176 DAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN 227 (444)
T ss_pred cCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence 7899988654322121 1345677777777765 247999888763
No 479
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=29.59 E-value=3.3e+02 Score=23.50 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=50.8
Q ss_pred CCCEEEEecCCccHHHHHHHH-HCCC-CeEEEeeChh-HH-hhccc------CCCCeEEee-CCCCCCCCccceeeehhh
Q 023625 113 GLKSLVDVAGGTGIMARAIAT-AFPD-IKCTVFDLPH-VV-DNLQG------TNDNLDFLG-GNMFEAIPQANAVLLKWI 181 (279)
Q Consensus 113 ~~~~vlDvG~G~G~~~~~l~~-~~p~-~~~~~~D~~~-~~-~~a~~------~~~ri~~~~-~d~~~~~~~~D~v~~~~v 181 (279)
+..+|.=||+|.=..+.+++- ...- ...+++|+.+ .. ..+.. ......+.. +|+. ...++|+|++..-
T Consensus 2 ~~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG 80 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAG 80 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCC
Confidence 456888899743222222222 2222 2588999832 22 11111 112224443 5543 3567999987432
Q ss_pred hccCC---h----hHHHHHHHHHHHhCCCCCCCcEEEEEe
Q 023625 182 LHNWN---D----EESVKLLKKCKEAIPSKDEGGKVIIID 214 (279)
Q Consensus 182 lh~~~---~----~~~~~~L~~~~~~L~~~~pgG~lli~e 214 (279)
.-.-+ . .....+++++.+.++..+|.|.++++.
T Consensus 81 ~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 81 ARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 21111 1 123456666666665444789888766
No 480
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=29.52 E-value=61 Score=25.67 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=36.1
Q ss_pred EEEEecCCccHHHHHHHH---HCCC---CeEEEeeC-hhHHhhcc--------cCCCCeEEeeC-CCCCCCCccceeee
Q 023625 116 SLVDVAGGTGIMARAIAT---AFPD---IKCTVFDL-PHVVDNLQ--------GTNDNLDFLGG-NMFEAIPQANAVLL 178 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~---~~p~---~~~~~~D~-~~~~~~a~--------~~~~ri~~~~~-d~~~~~~~~D~v~~ 178 (279)
+|.=||+|+-.+...+.. ..+. .+++.+|+ ++-++... +....+++... |..+.+.++|.|+.
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 79 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVIN 79 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 467799999888765553 3343 46888998 65554322 12344554433 33334556777765
No 481
>PRK07236 hypothetical protein; Provisional
Probab=29.35 E-value=76 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
..+|+=||+|.+.++.+++-+..+++++++|.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999999988887777767889999997
No 482
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=29.25 E-value=2.8e+02 Score=23.68 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=43.6
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccC---------C--------CCeEEeeCCCCCCCCccce
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQGT---------N--------DNLDFLGGNMFEAIPQANA 175 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~---------~--------~ri~~~~~d~~~~~~~~D~ 175 (279)
..+|.=||+|.=..+++..-...+.+++++|. ++.++.+++. . .++++. .|..+...++|+
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~aDl 82 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAAVSGADL 82 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHHhccCCE
Confidence 45777888874332222222224568999997 6555544320 0 112221 222112345898
Q ss_pred eeehhhhccCChh--HHHHHHHHHHHhCC
Q 023625 176 VLLKWILHNWNDE--ESVKLLKKCKEAIP 202 (279)
Q Consensus 176 v~~~~vlh~~~~~--~~~~~L~~~~~~L~ 202 (279)
|+..- +++ ....++.++.+.++
T Consensus 83 Vi~av-----~~~~~~~~~v~~~l~~~~~ 106 (311)
T PRK06130 83 VIEAV-----PEKLELKRDVFARLDGLCD 106 (311)
T ss_pred EEEec-----cCcHHHHHHHHHHHHHhCC
Confidence 88752 222 24567888887776
No 483
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=29.17 E-value=84 Score=28.69 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=24.0
Q ss_pred EEEEecCCccHHHHHHHHH-------CCCCeEEEeeC-hhHHhh
Q 023625 116 SLVDVAGGTGIMARAIATA-------FPDIKCTVFDL-PHVVDN 151 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~ 151 (279)
+|.=||+|+. ++..+.+- .|..+++.+|+ ++-++.
T Consensus 2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~ 44 (437)
T cd05298 2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEK 44 (437)
T ss_pred eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHH
Confidence 6788999996 77665542 34467899998 544443
No 484
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=29.05 E-value=3.6e+02 Score=23.59 Aligned_cols=94 Identities=15% Similarity=0.142 Sum_probs=52.2
Q ss_pred hCCCCEEEEecCC-ccHHHHHHHHHCCCCeEEEeeC-hhHHhhcccCCCCeEEeeCC----CCCC----C-Cccceeeeh
Q 023625 111 FEGLKSLVDVAGG-TGIMARAIATAFPDIKCTVFDL-PHVVDNLQGTNDNLDFLGGN----MFEA----I-PQANAVLLK 179 (279)
Q Consensus 111 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~ri~~~~~d----~~~~----~-~~~D~v~~~ 179 (279)
.....+||=.|+| .|..+..+++...-.++++.|. ++-.+.+++......+-..+ +.+. . .++|+++-.
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~ 262 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFEC 262 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEEC
Confidence 4456777777753 4667777777764336888887 66666666542211111111 1000 0 146776643
Q ss_pred hhhccCChhHHHHHHHHHHHhCCCCCCC-cEEEEEee
Q 023625 180 WILHNWNDEESVKLLKKCKEAIPSKDEG-GKVIIIDM 215 (279)
Q Consensus 180 ~vlh~~~~~~~~~~L~~~~~~L~~~~pg-G~lli~e~ 215 (279)
- .. ...+....+.++ ++ |+++++..
T Consensus 263 ~-----G~---~~~~~~~~~~~~---~~~G~~v~~g~ 288 (368)
T TIGR02818 263 I-----GN---VNVMRAALECCH---KGWGESIIIGV 288 (368)
T ss_pred C-----CC---HHHHHHHHHHhh---cCCCeEEEEec
Confidence 1 11 234666677787 55 99888765
No 485
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.02 E-value=88 Score=27.73 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=26.6
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEE---eeC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTV---FDL 145 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~ 145 (279)
..+++.|||-|.++..+...++.-.++. +|.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR 217 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDR 217 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecc
Confidence 7999999999999999999988776655 564
No 486
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=29.01 E-value=68 Score=24.97 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=25.5
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
+|+=||+|.+.++.+..-+.++.+++++|.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 478899999999988888888889888863
No 487
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=28.90 E-value=1.2e+02 Score=25.33 Aligned_cols=31 Identities=23% Similarity=0.237 Sum_probs=26.9
Q ss_pred CEEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 115 KSLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 115 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
..|+=||+|...++.++..+.++++++++|.
T Consensus 26 ~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 26 VDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 4688899999999888877778899999996
No 488
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=28.79 E-value=95 Score=23.66 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=27.6
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEeeChhHHhhccc
Q 023625 120 VAGGTGIMARAIATAFPDIKCTVFDLPHVVDNLQG 154 (279)
Q Consensus 120 vG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~ 154 (279)
+-||||.=..-.+.++|++++...--+...+.+++
T Consensus 64 liCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 98 (148)
T PRK05571 64 LICGTGIGMSIAANKVKGIRAALCHDTYSAHLARE 98 (148)
T ss_pred EEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHH
Confidence 34888887777899999999777766777777775
No 489
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=28.66 E-value=3.3e+02 Score=24.46 Aligned_cols=104 Identities=9% Similarity=-0.009 Sum_probs=52.4
Q ss_pred hCCCCEEEEecC-Cc-cHHHHHHHHHCCC------CeEEEe--eChhHHhhcc--c-------CCCCeEEeeCCCCCCCC
Q 023625 111 FEGLKSLVDVAG-GT-GIMARAIATAFPD------IKCTVF--DLPHVVDNLQ--G-------TNDNLDFLGGNMFEAIP 171 (279)
Q Consensus 111 ~~~~~~vlDvG~-G~-G~~~~~l~~~~p~------~~~~~~--D~~~~~~~a~--~-------~~~ri~~~~~d~~~~~~ 171 (279)
+.+..+|.=+|+ |. |......+-...- +..+.+ |...-...+. . ...++.+..+| .+...
T Consensus 41 ~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~-y~~~k 119 (387)
T TIGR01757 41 WKKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDP-YEVFE 119 (387)
T ss_pred CCCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCC-HHHhC
Confidence 345689999998 76 4433332222111 234444 5422111111 1 11244444443 33456
Q ss_pred ccceeeehhhhccCChh-------HHHHHHHHHHHhCCCC-CCCcEEEEEee
Q 023625 172 QANAVLLKWILHNWNDE-------ESVKLLKKCKEAIPSK-DEGGKVIIIDM 215 (279)
Q Consensus 172 ~~D~v~~~~vlh~~~~~-------~~~~~L~~~~~~L~~~-~pgG~lli~e~ 215 (279)
++|+|++..-.-.-+.+ ...++++++.+.++.. +|+++++++..
T Consensus 120 daDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 120 DADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 78999886543222221 2356677776666542 27898888763
No 490
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=28.59 E-value=61 Score=20.70 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=15.8
Q ss_pred ecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 120 VAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 120 vG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
||+|.+.++.+..-+-.+.+++++|.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEES
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEec
Confidence 68886555444333333779999996
No 491
>PRK10458 DNA cytosine methylase; Provisional
Probab=27.78 E-value=2.9e+02 Score=25.53 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHh
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVD 150 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~ 150 (279)
.-+++|+=||.|.+...+-+..-+ .+...|. +...+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~-~v~a~Eid~~A~~ 124 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQ-CVFTSEWNKHAVR 124 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCE-EEEEEechHHHHH
Confidence 458999999999999999776322 3455677 44433
No 492
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=27.69 E-value=66 Score=27.50 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=23.0
Q ss_pred EEEEecCCccHHHHHHHHHCCCCeEEEeeC
Q 023625 116 SLVDVAGGTGIMARAIATAFPDIKCTVFDL 145 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 145 (279)
.|+=||||.+.++.+++-+.-+.+++++|.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 588899998888887777767788999986
No 493
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=27.56 E-value=27 Score=22.04 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.4
Q ss_pred cccccCceeecCCCeEecChhcc
Q 023625 3 ILVHSGFFAQQKDDEYFLTPASR 25 (279)
Q Consensus 3 ~L~~~g~l~~~~~~~y~~t~~s~ 25 (279)
-+...|+++.+++ ++++|+.|.
T Consensus 44 ~l~~~Gll~~~~~-~l~lT~~G~ 65 (66)
T PF06969_consen 44 ELQEDGLLEIDGG-RLRLTEKGR 65 (66)
T ss_dssp HHHHTTSEEE-SS-EEEE-TTTG
T ss_pred HHHHCCCEEEeCC-EEEECcccC
Confidence 4667899999886 999999875
No 494
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=27.50 E-value=80 Score=27.14 Aligned_cols=27 Identities=22% Similarity=0.428 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCCCCCCCcEEEEEeeec
Q 023625 188 EESVKLLKKCKEAIPSKDEGGKVIIIDMAI 217 (279)
Q Consensus 188 ~~~~~~L~~~~~~L~~~~pgG~lli~e~~~ 217 (279)
++....|..+.+.|+ |||+++|+....
T Consensus 213 ~~L~~~L~~~~~~L~---~gGrl~visfHS 239 (296)
T PRK00050 213 EELERALEAALDLLK---PGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHHHHHhc---CCCEEEEEecCc
Confidence 456788999999999 799999988643
No 495
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=27.44 E-value=3.8e+02 Score=22.60 Aligned_cols=28 Identities=14% Similarity=0.147 Sum_probs=20.0
Q ss_pred eeCCHHHHHHHHHHCCCceeEEEecCCc
Q 023625 244 KERSVDDWKKLFLAAGFSHYKITPMLGV 271 (279)
Q Consensus 244 ~~r~~~e~~~ll~~aGf~~~~~~~~~~~ 271 (279)
..-+.+..+.+++..|-+.+.+.+.+++
T Consensus 159 ~~~~~~~~~~~l~~lg~~~v~v~d~~Gf 186 (288)
T PRK09260 159 SDETVQVAKEVAEQMGKETVVVNEFPGF 186 (288)
T ss_pred CHHHHHHHHHHHHHcCCeEEEecCcccH
Confidence 3346677788899999887777665654
No 496
>COG1733 Predicted transcriptional regulators [Transcription]
Probab=27.22 E-value=22 Score=26.00 Aligned_cols=28 Identities=32% Similarity=0.358 Sum_probs=21.6
Q ss_pred CccccccCceeecCC------CeEecChhcchhh
Q 023625 1 MRILVHSGFFAQQKD------DEYFLTPASRLLL 28 (279)
Q Consensus 1 Lr~L~~~g~l~~~~~------~~y~~t~~s~~L~ 28 (279)
|+.|+..|++.+..- -.|++|+.|+-|.
T Consensus 58 Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~ 91 (120)
T COG1733 58 LKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLL 91 (120)
T ss_pred HHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHH
Confidence 567889999988763 2799999987653
No 497
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=27.15 E-value=98 Score=28.15 Aligned_cols=62 Identities=18% Similarity=0.393 Sum_probs=35.9
Q ss_pred EEEEecCCccHHHHHHHHH-------CCCCeEEEeeC-hhHHhhc----c----cCCCCeEEeeC-CCCCCCCccceeee
Q 023625 116 SLVDVAGGTGIMARAIATA-------FPDIKCTVFDL-PHVVDNL----Q----GTNDNLDFLGG-NMFEAIPQANAVLL 178 (279)
Q Consensus 116 ~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-~~~~~~a----~----~~~~ri~~~~~-d~~~~~~~~D~v~~ 178 (279)
+|.=||+|+. ++..+.+. .|..+++.+|+ ++-++.. + +....+++... |..+.+.++|.|+.
T Consensus 2 KI~iIGgGS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 2 KIAIIGGGSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred EEEEECCchH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 6788999996 77766652 35567999998 5444432 1 12234444332 33334555666655
No 498
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.94 E-value=3.9e+02 Score=22.56 Aligned_cols=90 Identities=10% Similarity=0.113 Sum_probs=49.4
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc-----------CC-----------CCeEEeeCCCCCCC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG-----------TN-----------DNLDFLGGNMFEAI 170 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-----------~~-----------~ri~~~~~d~~~~~ 170 (279)
..+|.=||+|.=..+++..-...+.+++++|. ++.++.+.+ .. .++++. .|+ +..
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 81 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDL-EDL 81 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCH-HHh
Confidence 45788888875443333333334668999998 666655321 00 223322 232 234
Q ss_pred CccceeeehhhhccCCh-hHHHHHHHHHHHhCCCCCCCcEEEEE
Q 023625 171 PQANAVLLKWILHNWND-EESVKLLKKCKEAIPSKDEGGKVIII 213 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~-~~~~~~L~~~~~~L~~~~pgG~lli~ 213 (279)
.++|+|+..-. .+ +-...+++++.+.++ |+. +++.
T Consensus 82 ~~aD~Vieavp----e~~~~k~~~~~~l~~~~~---~~~-ii~s 117 (292)
T PRK07530 82 ADCDLVIEAAT----EDETVKRKIFAQLCPVLK---PEA-ILAT 117 (292)
T ss_pred cCCCEEEEcCc----CCHHHHHHHHHHHHhhCC---CCc-EEEE
Confidence 46898887521 12 123467888888888 454 4443
No 499
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=26.70 E-value=98 Score=27.11 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=24.6
Q ss_pred CCCCEEEEecCCccHHHH--HHHHHCCCCeEEEee
Q 023625 112 EGLKSLVDVAGGTGIMAR--AIATAFPDIKCTVFD 144 (279)
Q Consensus 112 ~~~~~vlDvG~G~G~~~~--~l~~~~p~~~~~~~D 144 (279)
+..-+||-||||+|..+. .+.++.+.-++.++|
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIve 71 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVE 71 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEec
Confidence 345689999999998765 466677776666666
No 500
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=26.64 E-value=2.8e+02 Score=27.18 Aligned_cols=150 Identities=11% Similarity=0.067 Sum_probs=79.3
Q ss_pred CCEEEEecCCccHHHHHHHHHCCCCeEEEeeC-hhHHhhccc----------------------CCCCeEEeeCCCCCCC
Q 023625 114 LKSLVDVAGGTGIMARAIATAFPDIKCTVFDL-PHVVDNLQG----------------------TNDNLDFLGGNMFEAI 170 (279)
Q Consensus 114 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----------------------~~~ri~~~~~d~~~~~ 170 (279)
..+|.=||+|+=...++..-...+..++++|. ++.++.+.. ...|+++. .|+ +..
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~~~ 390 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY-AGF 390 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-HHh
Confidence 46899999988444444444445889999998 776655431 01355543 233 234
Q ss_pred CccceeeehhhhccCChhHHHHHHHHHHHhCCCCCCCcEEEEEeeecCCCC----CCchh-hhhhhhcchh---hhhh-c
Q 023625 171 PQANAVLLKWILHNWNDEESVKLLKKCKEAIPSKDEGGKVIIIDMAIENQS----QDKES-METQLCFDIL---MVSL-F 241 (279)
Q Consensus 171 ~~~D~v~~~~vlh~~~~~~~~~~L~~~~~~L~~~~pgG~lli~e~~~~~~~----~~~~~-~~~~~~~d~~---~~~~-~ 241 (279)
.++|+|+=. +.-++.- -.++++++-+.++ |+..|.-....++-.. ...|. .....+++-. -++. .
T Consensus 391 ~~aDlViEa-v~E~l~~--K~~vf~~l~~~~~---~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv 464 (715)
T PRK11730 391 ERVDVVVEA-VVENPKV--KAAVLAEVEQKVR---EDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVI 464 (715)
T ss_pred cCCCEEEec-ccCcHHH--HHHHHHHHHhhCC---CCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEee
Confidence 568877743 3333322 3588999999998 4644333222221100 00000 0000011100 0000 0
Q ss_pred CC---eeCCHHHHHHHHHHCCCceeEEEecCCc
Q 023625 242 RG---KERSVDDWKKLFLAAGFSHYKITPMLGV 271 (279)
Q Consensus 242 ~~---~~r~~~e~~~ll~~aGf~~~~~~~~~~~ 271 (279)
.| ...+.+...++++..|...+.+.+.||+
T Consensus 465 ~g~~T~~~~~~~~~~~~~~lgk~pv~v~d~pGf 497 (715)
T PRK11730 465 RGEKTSDETIATVVAYASKMGKTPIVVNDCPGF 497 (715)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCceEEecCcCch
Confidence 11 2235567788889999998888777775
Done!