BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023626
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 221 LAVEMERSLEELKEFPQYFGF-----------SLGKRIAPRHWHLKQRNVRIKLNKMLLW 269
L ++ + S+E+LK+ + F +L RI P + I + M+L
Sbjct: 108 LGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLT 167
Query: 270 SDNRFYTKW 278
DNRF KW
Sbjct: 168 GDNRFVAKW 176
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 221 LAVEMERSLEELKEFPQYFGF-----------SLGKRIAPRHWHLKQRNVRIKLNKMLLW 269
L ++ + S+E+LK+ + F +L RI P + I + M+L
Sbjct: 108 LGIKTDESVEKLKQQGKTVVFILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLT 167
Query: 270 SDNRFYTKW 278
DNRF KW
Sbjct: 168 GDNRFVAKW 176
>pdb|3R4R|A Chain A, Crystal Structure Of A Hypothetical Fimbrial Assembly
Protein (Bdi_3522) From Parabacteroides Distasonis Atcc
8503 At 2.38 A Resolution
pdb|3R4R|B Chain B, Crystal Structure Of A Hypothetical Fimbrial Assembly
Protein (Bdi_3522) From Parabacteroides Distasonis Atcc
8503 At 2.38 A Resolution
Length = 296
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 73 STIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERR 127
S I F + + NG FS LAY P + F EI F +I + + VE +
Sbjct: 201 SKITIFNTSAVENGAFSDLAY--PTTKPVTFYTYEISDAFKEVILSVQSGVEPKE 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,416,110
Number of Sequences: 62578
Number of extensions: 281706
Number of successful extensions: 1014
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1014
Number of HSP's gapped (non-prelim): 8
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)