BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023626
         (279 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q8R3J4|MTER1_MOUSE mTERF domain-containing protein 1, mitochondrial OS=Mus musculus
           GN=Mterfd1 PE=2 SV=1
          Length = 412

 Score = 37.7 bits (86), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 88/202 (43%), Gaps = 33/202 (16%)

Query: 26  SSQNPPLYLKFKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQIL----STIDFFKSK 81
            + N  L L F+   ++ L +L+ +G+ D    P    +  + S+ L    + + + +SK
Sbjct: 169 DAANLLLRLDFEKHIKQILLFLKDLGLEDNQLGPFLTKNYAIFSEDLENLKTRVAYLQSK 228

Query: 82  GLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNV 141
             +    +R+    P  F ++F    ++    F   +L  +V++ R L++  P++L+ ++
Sbjct: 229 NFSKTDIARMVKNAP--FLLSFSVERLDNRLGFFQKELELNVKKTRDLVVRLPRLLTGSL 286

Query: 142 EYCLKPTLDYLTKLGVKKLNVPSTLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCAR 201
           E   +    Y  +LG K             +  ++ +   ++  + +  N+R+  E    
Sbjct: 287 EPVKENMKVYHLELGFK-------------HNEIQHM--VIKIPKMLTANKRKLTE---- 327

Query: 202 MPAIFGY-----NIEHHLKIKF 218
              IF Y     NI HH+ +KF
Sbjct: 328 ---IFDYVHNVMNIPHHIIVKF 346


>sp|Q5FYA8|ARSH_HUMAN Arylsulfatase H OS=Homo sapiens GN=ARSH PE=2 SV=1
          Length = 562

 Score = 32.0 bits (71), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 7/50 (14%)

Query: 96  PQFFSINFDPSEI-------EPVFDFLITDLHASVEERRGLIIGCPQMLS 138
           P  F I+ DPSE        EP+FD +I  + A++ E R  +   PQ  S
Sbjct: 480 PLLFDISRDPSEALPLNPDNEPLFDSVIKKMEAAIREHRRTLTPVPQQFS 529


>sp|Q5AG86|CIAO1_CANAL Probable cytosolic iron-sulfur protein assembly protein 1
          OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
          GN=CIA1 PE=3 SV=1
          Length = 383

 Score = 31.6 bits (70), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 25/39 (64%)

Query: 7  LPIVSSYSSDKSSNPPSFSSSQNPPLYLKFKTSHRENLR 45
          LPI+++ S+DKS+     S+ Q  PL  K + +H+ ++R
Sbjct: 24 LPIIATASTDKSTKLYKLSARQKFPLVAKLEDTHKRSIR 62


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,941,074
Number of Sequences: 539616
Number of extensions: 4170744
Number of successful extensions: 10566
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 10565
Number of HSP's gapped (non-prelim): 12
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)