Query 023626
Match_columns 279
No_of_seqs 179 out of 1288
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 10:02:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 100.0 1.5E-44 5.2E-49 321.8 13.8 231 41-279 6-256 (270)
2 3mva_O Transcription terminati 100.0 4.4E-44 1.5E-48 329.1 13.0 241 33-279 44-340 (343)
3 4fp9_B Mterf domain-containing 100.0 4.5E-38 1.6E-42 286.6 18.7 201 69-279 44-260 (335)
4 3mva_O Transcription terminati 100.0 5.9E-33 2E-37 255.0 12.0 216 38-259 17-287 (343)
5 3m66_A Mterf3, mterf domain-co 100.0 3.5E-30 1.2E-34 229.0 12.0 202 71-277 5-218 (270)
6 4fp9_B Mterf domain-containing 99.9 3.6E-26 1.2E-30 208.2 12.3 175 40-227 46-227 (335)
7 4fzv_B Mterf domain-containing 99.6 9.2E-14 3.1E-18 110.1 15.2 168 107-279 32-215 (239)
8 4fzv_B Mterf domain-containing 98.9 2.1E-09 7E-14 85.2 7.3 148 69-227 31-182 (239)
9 3ff5_A PEX14P, peroxisomal bio 86.5 0.8 2.7E-05 29.7 3.7 25 70-94 29-53 (54)
10 3ff5_A PEX14P, peroxisomal bio 84.8 2.4 8.3E-05 27.4 5.4 36 91-132 18-53 (54)
11 2xzm_O RPS13E; ribosome, trans 80.8 6.3 0.00022 30.9 7.4 80 50-132 11-96 (153)
12 2w84_A Peroxisomal membrane pr 80.4 1.8 6E-05 29.5 3.6 26 70-95 34-59 (70)
13 3u5c_N S27A, YS15, 40S ribosom 79.1 6.6 0.00023 30.7 7.0 80 50-132 9-94 (151)
14 2w84_A Peroxisomal membrane pr 74.1 7 0.00024 26.6 5.1 36 92-133 24-59 (70)
15 1ify_A HHR23A, UV excision rep 73.7 3.5 0.00012 25.9 3.4 38 178-223 8-45 (49)
16 2g3q_A Protein YBL047C; endocy 69.2 3.4 0.00012 25.0 2.5 36 179-222 5-40 (43)
17 1vej_A Riken cDNA 4931431F19; 66.9 4.1 0.00014 28.1 2.8 43 36-80 25-67 (74)
18 1z96_A DNA-damage, UBA-domain 66.5 6.1 0.00021 23.1 3.3 24 179-202 5-28 (40)
19 2ooa_A E3 ubiquitin-protein li 66.3 4.6 0.00016 25.8 2.7 25 176-200 9-33 (52)
20 3j20_Q 30S ribosomal protein S 65.5 15 0.0005 29.1 6.1 49 50-98 9-60 (158)
21 4ae4_A Ubiquitin-associated pr 61.6 10 0.00035 28.4 4.4 98 40-154 8-113 (118)
22 4ae4_A Ubiquitin-associated pr 61.0 49 0.0017 24.7 12.7 40 179-226 77-116 (118)
23 2oo9_A E3 ubiquitin-protein li 60.1 10 0.00036 23.4 3.4 24 177-200 3-26 (46)
24 2ekk_A UBA domain from E3 ubiq 59.9 7.4 0.00025 23.9 2.8 35 179-222 10-44 (47)
25 1vg5_A RSGI RUH-014, rhomboid 59.8 5.8 0.0002 27.2 2.5 38 178-223 29-66 (73)
26 1wji_A Tudor domain containing 59.2 7.6 0.00026 25.7 3.0 38 179-224 10-47 (63)
27 1oqy_A HHR23A, UV excision rep 57.8 31 0.0011 31.1 7.8 28 69-96 166-193 (368)
28 2knz_A Ubiquilin-4; cytoplasm, 57.3 9.1 0.00031 24.3 3.0 41 175-223 8-49 (53)
29 2ooa_A E3 ubiquitin-protein li 57.3 22 0.00076 22.6 4.7 43 69-121 9-51 (52)
30 2cos_A Serine/threonine protei 57.1 20 0.00069 22.9 4.5 45 107-159 8-52 (54)
31 2d9s_A CBL E3 ubiquitin protei 56.8 11 0.00037 24.1 3.2 23 178-200 9-31 (53)
32 1veg_A NEDD8 ultimate buster-1 56.2 9.6 0.00033 26.8 3.2 40 179-226 30-69 (83)
33 2dak_A Ubiquitin carboxyl-term 55.6 10 0.00036 24.9 3.2 40 179-226 10-49 (63)
34 1wiv_A UBP14, ubiquitin-specif 54.3 11 0.00037 25.7 3.2 37 179-223 30-66 (73)
35 2juj_A E3 ubiquitin-protein li 52.0 14 0.00049 23.7 3.2 24 177-200 6-29 (56)
36 2knz_A Ubiquilin-4; cytoplasm, 50.0 45 0.0015 20.9 5.9 40 68-116 8-48 (53)
37 2jy5_A Ubiquilin-1; UBA, alter 47.4 15 0.00052 23.1 2.8 24 177-200 11-35 (52)
38 2dag_A Ubiquitin carboxyl-term 45.1 15 0.00052 25.0 2.7 41 179-226 10-50 (74)
39 2dah_A Ubiquilin-3; UBA domain 44.0 4.1 0.00014 26.2 -0.3 13 41-53 10-22 (54)
40 1vg5_A RSGI RUH-014, rhomboid 44.0 16 0.00055 25.0 2.7 21 73-93 31-51 (73)
41 1dv0_A DNA repair protein HHR2 43.7 7.8 0.00027 24.0 1.0 23 180-202 6-28 (47)
42 1wgn_A UBAP1, ubiquitin associ 42.1 20 0.00067 23.7 2.7 39 179-225 20-58 (63)
43 2dai_A Ubadc1, ubiquitin assoc 40.2 24 0.00082 24.7 3.2 40 179-226 30-69 (83)
44 2c35_A Human RPB4, DNA-directe 40.1 29 0.001 27.1 4.1 63 60-130 79-141 (152)
45 2cpw_A CBL-interacting protein 39.3 23 0.00078 23.4 2.8 38 180-224 21-58 (64)
46 2cwb_A Chimera of immunoglobul 37.8 9.9 0.00034 28.1 0.9 39 69-116 64-103 (108)
47 3j20_Q 30S ribosomal protein S 37.3 44 0.0015 26.3 4.6 41 165-205 20-60 (158)
48 2v79_A DNA replication protein 36.4 32 0.0011 26.2 3.7 53 74-131 21-73 (135)
49 2of5_A Death domain-containing 35.7 59 0.002 23.9 5.0 38 78-120 42-79 (114)
50 2dkl_A Trinucleotide repeat co 35.1 32 0.0011 24.1 3.2 38 179-224 22-59 (85)
51 2xzm_O RPS13E; ribosome, trans 35.0 49 0.0017 25.9 4.4 41 165-205 22-62 (153)
52 2o71_A Death domain-containing 34.9 64 0.0022 23.8 5.1 38 78-120 42-79 (115)
53 2bwb_A Ubiquitin-like protein 34.2 39 0.0013 20.6 3.1 25 176-200 5-30 (46)
54 1vek_A UBP14, ubiquitin-specif 33.2 36 0.0012 23.8 3.2 41 179-226 30-70 (84)
55 1wj7_A Hypothetical protein (R 33.1 31 0.0011 25.2 2.9 40 176-223 37-77 (104)
56 3u5c_N S27A, YS15, 40S ribosom 33.1 48 0.0016 25.9 4.1 39 165-203 20-58 (151)
57 1whc_A RSGI RUH-027, UBA/UBX 3 33.1 24 0.00083 23.2 2.2 39 181-226 12-50 (64)
58 1ich_A TNF-1, tumor necrosis f 32.9 63 0.0021 23.9 4.6 49 75-128 29-77 (112)
59 1ixs_A Holliday junction DNA h 30.1 60 0.0021 21.1 3.7 27 69-95 15-41 (62)
60 1wr1_B Ubiquitin-like protein 29.9 46 0.0016 21.5 3.0 40 176-223 15-55 (58)
61 2e8o_A SAM domain and HD domai 29.4 1E+02 0.0034 22.0 5.3 13 42-54 34-46 (103)
62 2crn_A Ubash3A protein; compac 29.3 41 0.0014 22.1 2.8 39 181-226 12-50 (64)
63 1g6u_A Domain swapped dimer; d 28.9 69 0.0024 19.0 3.4 24 69-92 3-26 (48)
64 1q08_A Zn(II)-responsive regul 28.5 43 0.0015 23.4 3.0 23 179-201 6-28 (99)
65 3k9o_A Ubiquitin-conjugating e 27.8 46 0.0016 27.0 3.4 26 177-202 162-187 (201)
66 3oq9_A Tumor necrosis factor r 27.3 1.6E+02 0.0054 20.5 6.3 45 71-120 12-56 (86)
67 2ef8_A C.ECOT38IS, putative tr 25.9 1.4E+02 0.0047 19.3 6.1 56 177-233 10-74 (84)
68 4ayb_F DNA-directed RNA polyme 25.4 57 0.0019 24.0 3.3 31 67-97 48-78 (113)
69 2yqf_A Ankyrin-1; death domain 24.1 1.5E+02 0.0051 21.3 5.4 37 79-120 37-73 (111)
70 2dkz_A Hypothetical protein LO 23.5 1.7E+02 0.0059 20.4 5.2 53 69-131 18-74 (84)
71 2cp8_A NEXT to BRCA1 gene 1 pr 22.4 76 0.0026 20.2 2.9 18 177-194 8-25 (54)
72 3ugm_A TAL effector avrbs3/PTH 21.4 1.4E+02 0.0046 29.7 5.7 23 178-200 411-434 (1047)
73 2ve7_C Kinetochore protein NUF 20.5 2.2E+02 0.0075 23.9 6.5 93 178-276 16-124 (250)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=100.00 E-value=1.5e-44 Score=321.76 Aligned_cols=231 Identities=22% Similarity=0.327 Sum_probs=211.0
Q ss_pred hhhHHHHHhCCCCCCCCccccCC------Ccchh-hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHH
Q 023626 41 RENLRYLRAIGVIDPSTKPHKLP------SPEVV-SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFD 113 (279)
Q Consensus 41 ~~~l~~L~~~Gls~~~~ii~~~P------l~~~~-~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~ 113 (279)
.+.++||.++|++ .++ ++++| +..+. +++.++++||+++|+++++|++++.++|.+|++++| + ++|+++
T Consensus 6 s~~l~~L~~lGv~-~~~-i~k~p~~~p~lL~~~~~~~l~~~l~fL~~lG~~~~~i~~il~~~P~lL~~~~e-~-l~p~v~ 81 (270)
T 3m66_A 6 SETLQKLVLLGVD-LSK-IEKHPEAANLLLRLDFEKDIKQMLLFLKDVGIEDNQLGAFLTKNHAIFSEDLE-N-LKTRVA 81 (270)
T ss_dssp HHHHHHHHHTTCC-HHH-HTTSHHHHHHHHTCCHHHHTHHHHHHHHHHTCCGGGHHHHHHHCTTGGGSCHH-H-HHHHHH
T ss_pred hHHHHHHHHcCCC-HHH-HhhccchhhhhhccChhhhHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHH-H-HHHHHH
Confidence 4789999999994 544 35555 45665 799999999999999999999999999999999998 4 999999
Q ss_pred HHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHH-HHhCCCC--CCcchhcccccccccHHHHHHHHHHHH-Hcc
Q 023626 114 FLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYL-TKLGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIG 189 (279)
Q Consensus 114 fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L-~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G 189 (279)
||+ ++|+++++|.+++.++|++|+.+++ +++++++|| +++|+++ ...++.++|++++.+.+.++++++++. ++|
T Consensus 82 ~L~-~~Gls~~~i~~~l~~~P~lL~~s~~-~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~e~~~~~v~~l~~~~G 159 (270)
T 3m66_A 82 YLH-SKNFSKADVAQMVRKAPFLLNFSVE-RLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSLEPVKENMKVYRLELG 159 (270)
T ss_dssp HHH-HTTCCHHHHHHHHHHSTTGGGSCHH-HHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCSHHHHHHHHHHHHTSC
T ss_pred HHH-HcCCCHHHHHHHHHhCCHHHcCCHH-HHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeechHHHHHHHHHHHHHcC
Confidence 999 6999999999999999999999988 499999999 5799985 457899999999999999999999875 999
Q ss_pred CChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHHHhhCCceeecccCCchHHHHHHHHH---CCC------C
Q 023626 190 LNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQ---RNV------R 260 (279)
Q Consensus 190 ~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~---~G~------~ 260 (279)
|+.+++.+|+.++|+++++|. ++|++|++|+.++||++.++|+++|.+|+||++ ||+|||.+|+. +|+ .
T Consensus 160 ~s~~ei~~~v~~~P~il~~s~-~~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sle-ri~pR~~~l~~L~~~g~~~~~~~~ 237 (270)
T 3m66_A 160 FKHNEIQHMITRIPKMLTANK-MKLTETFDFVHNVMSIPHHIIVKFPQVFNTRLF-KVKERHLFLTYLGRAQYDPAKPNY 237 (270)
T ss_dssp CCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHH-HHHHHHHHHHHHTCCCCCTTSSSC
T ss_pred CCHHHHHHHHHhCChhheecH-HHHHHHHHHHHHHhCCCHHHHHhCchHhhCCHH-HHHHHHHHHHHhhccCCCCCCCCC
Confidence 999999999999999999998 799999999998999999999999999999999 99999999875 555 2
Q ss_pred CChhhhhccchhHHHHhhC
Q 023626 261 IKLNKMLLWSDNRFYTKWK 279 (279)
Q Consensus 261 ~~l~~~l~~s~~~F~~~~~ 279 (279)
+++.+++.+||++|+++||
T Consensus 238 ~~L~~~l~~sd~~F~~~~~ 256 (270)
T 3m66_A 238 ISLDKLVSIPDEIFCEEIA 256 (270)
T ss_dssp CCHHHHHHSCHHHHHHHTT
T ss_pred CCHHHHhcCCHHHHHHHHh
Confidence 6888899999999999986
No 2
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=4.4e-44 Score=329.09 Aligned_cols=241 Identities=17% Similarity=0.289 Sum_probs=213.0
Q ss_pred cccCCCCchhhHHHHHhCCCCCC--CCccccCC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCcc-ccccccCCc
Q 023626 33 YLKFKTSHRENLRYLRAIGVIDP--STKPHKLP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQF-FSINFDPSE 107 (279)
Q Consensus 33 ~~~~~~~~~~~l~~L~~~Gls~~--~~ii~~~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~l-L~~~~e~~~ 107 (279)
.+..+++.+++++||.++|++++ .+++.++| +..+.+++.++++||+++|++++++++++.++|++ ++.+.+ ++
T Consensus 44 ~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~~l~p~l~fL~~lG~s~~~i~~il~~~P~iLl~s~~~-~~ 122 (343)
T 3mva_O 44 FHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPENLSKRWDLWRKIVTSDLEIVNILERSPESFFRSNNN-LN 122 (343)
T ss_dssp GGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHHHHHHHHHHHTTTSSCHHHHHHHHHHCSHHHHSCCCH-HH
T ss_pred hccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHCCHHHhCCChH-hh
Confidence 45567888999999999999765 47899999 77788999999999999999999999999999994 555432 38
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCC------C--CCcchhcccccccccHHHHH
Q 023626 108 IEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVK------K--LNVPSTLNARLLNTRVERLR 179 (279)
Q Consensus 108 l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~------~--~~~li~~~P~ll~~s~~~l~ 179 (279)
+.|+++||+ ++|++.++|.+++.++|++|+.++++. ++++++|+++|++ + +..++.++|.+++++.++++
T Consensus 123 l~p~v~fL~-~lGl~~~~i~~ll~~~P~il~~~~e~~-~~~v~~L~~lgv~~g~~~p~~~I~~il~~~P~iL~~s~~~i~ 200 (343)
T 3mva_O 123 LENNIKFLY-SVGLTRKCLCRLLTNAPRTFSNSLDLN-KQMVEFLQAAGLSLGHNDPADFVRKIIFKNPFILIQSTKRVK 200 (343)
T ss_dssp HHHHHHHHH-HTTCCHHHHHHHHHHCGGGGTSCHHHH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHCGGGGGSCHHHHH
T ss_pred HHHHHHHHH-HhCCCHHHHHHHHHhCChhheeCHHHh-hHHHHHHHHhCCCcCCCcHHHHHHHHHHhCChHhcCCHHHHH
Confidence 999999999 799999999999999999999998865 9999999987663 1 33567788888877766666
Q ss_pred HHHHHHH-----------------------------------------HccCChHHHHHHHhcCCcccccChhhhHHHHH
Q 023626 180 ETLRFLR-----------------------------------------SIGLNRREAAEFCARMPAIFGYNIEHHLKIKF 218 (279)
Q Consensus 180 ~~v~~L~-----------------------------------------~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~ 218 (279)
++++||+ ++||+++|+.+|+.++|++|++|. ++|++|+
T Consensus 201 ~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG~s~~ev~~~v~~~P~il~~s~-~~l~~k~ 279 (343)
T 3mva_O 201 ANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLGCTEEEVQKFVLSYPDVIFLAE-KKFNDKI 279 (343)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTTCCHHHHHHHHHTCGGGGGSCH-HHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCCchhcccH-HHHHHHH
Confidence 6666665 479999999999999999999998 5899999
Q ss_pred HHHHHHhCCChHHHhhCCceeecccCCchHHHHHHHHHCCCCCChh--hhhccchhHHHHhhC
Q 023626 219 EFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNVRIKLN--KMLLWSDNRFYTKWK 279 (279)
Q Consensus 219 ~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~~~~l~--~~l~~s~~~F~~~~~ 279 (279)
+||.+ ||++.++|+++|.+|+||++ ||+|||++|+++|+++++. +++++||++|+++|+
T Consensus 280 ~fl~~-mg~~~~~i~~~P~~l~~sle-ri~~R~~~L~~~g~~~~~~~~~~l~~s~~~F~~~~~ 340 (343)
T 3mva_O 280 DCLME-ENISISQIIENPRVLDSSIS-TLKSRIKELVNAGCNLSTLNITLLSWSKKRYEAKLK 340 (343)
T ss_dssp HHHHT-TTCCHHHHHHSGGGGGSCHH-HHHHHHHHHHTTTCCSSSSCGGGGGSCHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHhCCHHHhcCHH-HHHHHHHHHHHCCCCCCCCcchhhcCCHHHHHHHHh
Confidence 99999 99999999999999999999 9999999999999999888 999999999999985
No 3
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=286.62 Aligned_cols=201 Identities=17% Similarity=0.267 Sum_probs=189.1
Q ss_pred hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhH
Q 023626 69 SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPT 148 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~ 148 (279)
..+...+..|.++||++++|+++++++|.++.. ++.+++.||. .+|++.++|.++|.++|++|+.+++ +|+++
T Consensus 44 ~~~e~~l~~L~d~Gfs~~~i~~il~~~P~il~~-----~l~~~i~~L~-~LGls~e~V~kiL~k~P~lL~~s~e-~L~~~ 116 (335)
T 4fp9_B 44 LELERVMSSLLDMGFSNAHINELLSVRRGASLQ-----QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKR 116 (335)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHCSSCCHH-----HHHHHHHHHH-HTTCCHHHHHHHHHHCGGGGGSCHH-HHHHH
T ss_pred ccHHHHHHHHHHCCCCHHHHHHHHHhCcccchh-----HHHHHHHHHH-HcCCCHHHHHHHHHhChhhccCCHH-HHHHH
Confidence 568889999999999999999999999999754 6788999999 6999999999999999999999986 59999
Q ss_pred HHHHHHhCCCCC--CcchhcccccccccHHHHHHHHHHHH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHh
Q 023626 149 LDYLTKLGVKKL--NVPSTLNARLLNTRVERLRETLRFLR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEM 225 (279)
Q Consensus 149 i~~L~~lG~~~~--~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~m 225 (279)
++||+++|++.. ..++.++|++++++.+.+..++.+|. ++||+.+++.+|+.++|+||++|. ++|++|++||.++|
T Consensus 117 l~fL~~lGl~~~~i~~ll~~~P~lL~~s~e~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~-e~L~~K~efLv~~M 195 (335)
T 4fp9_B 117 SSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRM 195 (335)
T ss_dssp HHHHHHTTCTTTTHHHHHHHCGGGGTSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH-HHHHHHHHHHHTTT
T ss_pred HHHHHHcCCCHHHHHHHHHhCchhhccChHHHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCH-HHHHHHHHHHHHHh
Confidence 999999999864 47899999999999999999999997 999999999999999999999997 69999999999999
Q ss_pred CCChHHHhhCCceeecccCCchHHHHHHHHHCCC-------------CCChhhhhccchhHHHHhhC
Q 023626 226 ERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNV-------------RIKLNKMLLWSDNRFYTKWK 279 (279)
Q Consensus 226 g~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~-------------~~~l~~~l~~s~~~F~~~~~ 279 (279)
|++.++|++ |.+|+||++ ||+|||.||+..|. +++|.+++.+||++||+++|
T Consensus 196 gl~~~eIvk-P~~l~ySLe-RIkpRH~fL~~lG~~q~~~~k~~~~~~npsL~~il~~sd~~F~~~vA 260 (335)
T 4fp9_B 196 GIKHPDIVK-SEYLQYSLT-KIKQRHIYLERLGRYQTPDKKGQTQIPNPLLKDILRVSEAEFLARTA 260 (335)
T ss_dssp CCCHHHHHH-TTGGGSCHH-HHHHHHHHHHHHTSCCCCCSSSCCSSCCCCHHHHTTSCHHHHHHHTS
T ss_pred CCCHHHccc-cchhhccHH-HHHHHHHHHHHcCCccCCCcccccCCCCccHHHHHcCCHHHHHHHHH
Confidence 999999998 999999999 99999999999988 35799999999999999987
No 4
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=100.00 E-value=5.9e-33 Score=255.02 Aligned_cols=216 Identities=17% Similarity=0.247 Sum_probs=182.5
Q ss_pred CCchhhHHHHHhCCCCCCCCccccCC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHH
Q 023626 38 TSHRENLRYLRAIGVIDPSTKPHKLP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFL 115 (279)
Q Consensus 38 ~~~~~~l~~L~~~Gls~~~~ii~~~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL 115 (279)
.+.+..++||.++|++ .+++++..| +..+.++++++++||+++|+++++|++++.++|.+|.++.+ ++.|+++||
T Consensus 17 ~~~~~~v~~L~s~Gl~-~~~~~~~~p~l~~~s~~~~~~vl~fL~~~G~s~~~i~~iv~~~P~lL~~~~~--~l~p~l~fL 93 (343)
T 3mva_O 17 LKNEDLLKNLLTMGVD-IDMARKRQPGVFHRMITNEQDLKMFLLSKGASKEVIASIISRYPRAITRTPE--NLSKRWDLW 93 (343)
T ss_dssp ---CCHHHHHHHHTCC-HHHHHHHCGGGGGCSCCCHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGCCHH--HHHHHHHHH
T ss_pred cccHHHHHHHHHcCCC-HHHHHHhCchhhccCcccHHHHHHHHHHcCCCHHHHHHHHHhCcHHHhCCHH--HHHHHHHHH
Confidence 4456689999999994 667788889 66778899999999999999999999999999999999965 999999999
Q ss_pred HHhcCCChHHHHHHHHhCCcc-cccChhhhhHhHHHHHHHhCCCC--CCcchhcccccccccHHHHHHHHHHHHHccCC-
Q 023626 116 ITDLHASVEERRGLIIGCPQM-LSSNVEYCLKPTLDYLTKLGVKK--LNVPSTLNARLLNTRVERLRETLRFLRSIGLN- 191 (279)
Q Consensus 116 ~~~lGls~~~i~~ll~~~P~i-L~~s~~~~l~~~i~~L~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~~~G~s- 191 (279)
+ ++|++++++.+++.++|++ ++.+.+++++|+++||+++|+++ ..+++.++|++++.+.+.+++++++|+++|++
T Consensus 94 ~-~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~fL~~lGl~~~~i~~ll~~~P~il~~~~e~~~~~v~~L~~lgv~~ 172 (343)
T 3mva_O 94 R-KIVTSDLEIVNILERSPESFFRSNNNLNLENNIKFLYSVGLTRKCLCRLLTNAPRTFSNSLDLNKQMVEFLQAAGLSL 172 (343)
T ss_dssp T-TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHHHHHHT
T ss_pred H-HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHHHHHHhCCCHHHHHHHHHhCChhheeCHHHhhHHHHHHHHhCCCc
Confidence 9 7999999999999999995 55553358999999999999985 56899999999999999999999999987764
Q ss_pred -----hHHHHHHHhcCCcccccChhhhHHHHHHHHHHHh----------------------------------------C
Q 023626 192 -----RREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEM----------------------------------------E 226 (279)
Q Consensus 192 -----~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~m----------------------------------------g 226 (279)
.+.|.+++.++|.++++| +++++++++|+.+++ |
T Consensus 173 g~~~p~~~I~~il~~~P~iL~~s-~~~i~~~v~fL~~~~G~~~~~~~~~i~~~~~~~l~~s~~~l~~~~~~l~e~~~~lG 251 (343)
T 3mva_O 173 GHNDPADFVRKIIFKNPFILIQS-TKRVKANIEFLRSTFNLNSEELLVLICGPGAEILDLSNDYARRSYANIKEKLFSLG 251 (343)
T ss_dssp TCSCHHHHHHHHHHHCGGGGGSC-HHHHHHHHHHHHHHSCCCHHHHHHHHHTTTGGGGGCCTTHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHHhCChHhcCC-HHHHHHHHHHHHHHcCCCHHHHHHHHhcCChHHhhccHHHHHHHHHHHHHHHHHcC
Confidence 778999999999999999 589999999999634 4
Q ss_pred CChHHH----hhCCceeecccCCchHHHHHHHHHCCC
Q 023626 227 RSLEEL----KEFPQYFGFSLGKRIAPRHWHLKQRNV 259 (279)
Q Consensus 227 ~~~~~i----~~~P~~L~~sl~~ri~pR~~~L~~~G~ 259 (279)
++.+++ .++|.+|++|.+ +|+++++||..+|+
T Consensus 252 ~s~~ev~~~v~~~P~il~~s~~-~l~~k~~fl~~mg~ 287 (343)
T 3mva_O 252 CTEEEVQKFVLSYPDVIFLAEK-KFNDKIDCLMEENI 287 (343)
T ss_dssp CCHHHHHHHHHTCGGGGGSCHH-HHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHhCCchhcccHH-HHHHHHHHHHHcCC
Confidence 444432 466777777776 47777777666666
No 5
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=99.96 E-value=3.5e-30 Score=229.02 Aligned_cols=202 Identities=15% Similarity=0.255 Sum_probs=180.1
Q ss_pred HHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHH
Q 023626 71 ILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLD 150 (279)
Q Consensus 71 l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~ 150 (279)
-.+++++|.++|++.++|.+....+|.+|+++.+ +++.|+++||+ ++|++.++|++++.++|.+|+.++++ ++|+++
T Consensus 5 ~s~~l~~L~~lGv~~~~i~k~p~~~p~lL~~~~~-~~l~~~l~fL~-~lG~~~~~i~~il~~~P~lL~~~~e~-l~p~v~ 81 (270)
T 3m66_A 5 HSETLQKLVLLGVDLSKIEKHPEAANLLLRLDFE-KDIKQMLLFLK-DVGIEDNQLGAFLTKNHAIFSEDLEN-LKTRVA 81 (270)
T ss_dssp HHHHHHHHHHTTCCHHHHTTSHHHHHHHHTCCHH-HHTHHHHHHHH-HHTCCGGGHHHHHHHCTTGGGSCHHH-HHHHHH
T ss_pred chHHHHHHHHcCCCHHHHhhccchhhhhhccChh-hhHHHHHHHHH-HcCCCHHHHHHHHHhCChhhhCCHHH-HHHHHH
Confidence 3588999999999999998888888888999998 89999999999 69999999999999999999999997 999999
Q ss_pred HHHHhCCCC--CCcchhcccccccccHHHHHHHHHHHH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCC
Q 023626 151 YLTKLGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMER 227 (279)
Q Consensus 151 ~L~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~ 227 (279)
||+++|+++ ..+++.++|++|+.+.++++++++||+ ++|++.+++.+++.++|+++++|. ++++++++|+..++|+
T Consensus 82 ~L~~~Gls~~~i~~~l~~~P~lL~~s~~~l~~~v~~L~~~lG~~~~~i~~ll~~~P~il~~s~-e~~~~~v~~l~~~~G~ 160 (270)
T 3m66_A 82 YLHSKNFSKADVAQMVRKAPFLLNFSVERLDNRLGFFQKELELSVKKTRDLVVRLPRLLTGSL-EPVKENMKVYRLELGF 160 (270)
T ss_dssp HHHHTTCCHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHCCCHHHHHHHHHHSGGGGTSCS-HHHHHHHHHHHHTSCC
T ss_pred HHHHcCCCHHHHHHHHHhCCHHHcCCHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCcceeech-HHHHHHHHHHHHHcCC
Confidence 999999975 457899999999999999999999995 899999999999999999999999 6999999998778999
Q ss_pred ChHHH----hhCCceeecccCCchHHHHHHHH-HCCCC----CChhhhhccchhHHHHh
Q 023626 228 SLEEL----KEFPQYFGFSLGKRIAPRHWHLK-QRNVR----IKLNKMLLWSDNRFYTK 277 (279)
Q Consensus 228 ~~~~i----~~~P~~L~~sl~~ri~pR~~~L~-~~G~~----~~l~~~l~~s~~~F~~~ 277 (279)
+.++| .++|.+|++|.+ +|+++++||. ++|++ .....++..|-++-..+
T Consensus 161 s~~ei~~~v~~~P~il~~s~~-~l~~k~~fL~~~mg~~~~~i~~~P~~l~~Sleri~pR 218 (270)
T 3m66_A 161 KHNEIQHMITRIPKMLTANKM-KLTETFDFVHNVMSIPHHIIVKFPQVFNTRLFKVKER 218 (270)
T ss_dssp CHHHHHHHHHHCGGGGTSCHH-HHHHHHHHHHTTSCCCHHHHHHCGGGGGSCHHHHHHH
T ss_pred CHHHHHHHHHhCChhheecHH-HHHHHHHHHHHHhCCCHHHHHhCchHhhCCHHHHHHH
Confidence 98865 689999999997 9999999995 68984 23335566665544433
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=99.93 E-value=3.6e-26 Score=208.16 Aligned_cols=175 Identities=14% Similarity=0.240 Sum_probs=158.2
Q ss_pred chhhHHHHHhCCCCCC--CCccccCC-CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHH
Q 023626 40 HRENLRYLRAIGVIDP--STKPHKLP-SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLI 116 (279)
Q Consensus 40 ~~~~l~~L~~~Gls~~--~~ii~~~P-l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~ 116 (279)
++.++..|.++||++. ++++..+| +. .+++.+++.+|..+|++.++|++++.++|++|..+++ +++++++||+
T Consensus 46 ~e~~l~~L~d~Gfs~~~i~~il~~~P~il--~~~l~~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e--~L~~~l~fL~ 121 (335)
T 4fp9_B 46 LERVMSSLLDMGFSNAHINELLSVRRGAS--LQQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM--QMRKRSSYLQ 121 (335)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHCSSCC--HHHHHHHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhCcccc--hhHHHHHHHHHHHcCCCHHHHHHHHHhChhhccCCHH--HHHHHHHHHH
Confidence 4567899999999654 47899999 42 4678899999999999999999999999999999997 8999999999
Q ss_pred HhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHH-HhCCCC--CCcchhcccccccccHHHHHHHHHHHH-HccCCh
Q 023626 117 TDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLT-KLGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIGLNR 192 (279)
Q Consensus 117 ~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~-~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~ 192 (279)
++|++.+++.+++.++|++|+++.+ .+..++.+|+ ++|++. ...++.++|++|.++.+.++++++||. +||++.
T Consensus 122 -~lGl~~~~i~~ll~~~P~lL~~s~e-~i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~ 199 (335)
T 4fp9_B 122 -KLGLGEGKLKRVLYCCPEIFTMRQQ-DINDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKH 199 (335)
T ss_dssp -HTTCTTTTHHHHHHHCGGGGTSCHH-HHHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCH
T ss_pred -HcCCCHHHHHHHHHhCchhhccChH-HHHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCH
Confidence 6999999999999999999999976 5999999997 599986 457899999999999999999999999 999999
Q ss_pred HHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCC
Q 023626 193 REAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMER 227 (279)
Q Consensus 193 ~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~ 227 (279)
++|. + |++|+||+| +|++|+.||.. +|.
T Consensus 200 ~eIv----k-P~~l~ySLe-RIkpRH~fL~~-lG~ 227 (335)
T 4fp9_B 200 PDIV----K-SEYLQYSLT-KIKQRHIYLER-LGR 227 (335)
T ss_dssp HHHH----H-TTGGGSCHH-HHHHHHHHHHH-HTS
T ss_pred HHcc----c-cchhhccHH-HHHHHHHHHHH-cCC
Confidence 9875 3 999999995 99999999996 786
No 7
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=99.57 E-value=9.2e-14 Score=110.13 Aligned_cols=168 Identities=19% Similarity=0.308 Sum_probs=148.0
Q ss_pred chhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCC--CCcchhcccccccccHHHHHHHHHH
Q 023626 107 EIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKK--LNVPSTLNARLLNTRVERLRETLRF 184 (279)
Q Consensus 107 ~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~ 184 (279)
++...+.-+. -+|++++-+.-++.+.|++|...+. .++.+-.||+.+|+.+ ..+++..||.++++....+...+..
T Consensus 32 qlldiisefi-llglnpepvcvvlkkspqllklpim-qmrkrssylqklglgegklkrvlyccpeiftmrqqdindtvrl 109 (239)
T 4fzv_B 32 QLLDIISEFI-LLGLNPEPVCVVLKKSPQLLKLPIM-QMRKRSSYLQKLGLGEGKLKRVLYCCPEIFTMRQQDINDTVRL 109 (239)
T ss_dssp TTTHHHHHHH-HHCCCTTHHHHHHHSCGGGGTSCHH-HHHHHHHHHHHHTTCSSCCHHHHHHCGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHHH-hhcCCCCceEEEecCCHHHhcChHH-HHHHHHHHHHHhCCCccchhhheecCcHHHHHHHhhHhHHHHH
Confidence 3444444444 4999999999999999999999976 5999999999999875 4578889999999999999999999
Q ss_pred HH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhCCChHHHhhCCceeecccCCchHHHHHHHHHCCC----
Q 023626 185 LR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEMERSLEELKEFPQYFGFSLGKRIAPRHWHLKQRNV---- 259 (279)
Q Consensus 185 L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg~~~~~i~~~P~~L~~sl~~ri~pR~~~L~~~G~---- 259 (279)
|. .+-|+..++.+++..||.++.-++ ..++-|+.|..-.||....+|++. .+|.||+. +|+.||-+|...|.
T Consensus 110 lkekclftvqqvtkilhscpsvlredl-gqleykfqyayfrmgikhpdivks-eylqyslt-kikqrhiylerlgryqtp 186 (239)
T 4fzv_B 110 LKEKCLFTVQQVTKILHSCPSVLREDL-GQLEYKFQYAYFRMGIKHPDIVKS-EYLQYSLT-KIKQRHIYLERLGRYQTP 186 (239)
T ss_dssp HHHHSCCCHHHHHHHHHHCGGGGTSCT-THHHHHHHHHHHTSCCCHHHHHHT-TGGGSCHH-HHHHHHHHHHHHTCCCCC
T ss_pred HHHhHHhhHHHHHHHHHhCcHHHHHHH-hhhhhhHhHHHHHccCCCcchhHH-HHHHHHHH-HHHHHHhHHHHhcccCCC
Confidence 99 899999999999999999999999 799999999988899999999884 79999999 99999999998776
Q ss_pred ---------CCChhhhhccchhHHHHhhC
Q 023626 260 ---------RIKLNKMLLWSDNRFYTKWK 279 (279)
Q Consensus 260 ---------~~~l~~~l~~s~~~F~~~~~ 279 (279)
++-+.+++..||.+|..+-|
T Consensus 187 dkkgqtqipnpllkdilrvseaeflarta 215 (239)
T 4fzv_B 187 DKKGQTQIPNPLLKDILRVSEAEFLARTA 215 (239)
T ss_dssp CSSSCCSSCCCCHHHHHTSCHHHHHHHTS
T ss_pred CccCCccCCChHHHHHHHHhHHHHHHHHh
Confidence 36688999999999998743
No 8
>4fzv_B Mterf domain-containing protein 2; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens}
Probab=98.92 E-value=2.1e-09 Score=85.25 Aligned_cols=148 Identities=14% Similarity=0.267 Sum_probs=129.5
Q ss_pred hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhH
Q 023626 69 SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPT 148 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~ 148 (279)
+.+...+.-|.-+|+.++-+.-++.+.|+++...+- +++.+-.||+ .+|+.+..+.+++-.||.|+++. ..++...
T Consensus 31 qqlldiisefillglnpepvcvvlkkspqllklpim--qmrkrssylq-klglgegklkrvlyccpeiftmr-qqdindt 106 (239)
T 4fzv_B 31 QQLLDIISEFILLGLNPEPVCVVLKKSPQLLKLPIM--QMRKRSSYLQ-KLGLGEGKLKRVLYCCPEIFTMR-QQDINDT 106 (239)
T ss_dssp CTTTHHHHHHHHHCCCTTHHHHHHHSCGGGGTSCHH--HHHHHHHHHH-HHTTCSSCCHHHHHHCGGGGTSC-HHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCceEEEecCCHHHhcChHH--HHHHHHHHHH-HhCCCccchhhheecCcHHHHHH-HhhHhHH
Confidence 445556667777899999999999999999999886 8999999999 79999999999999999999999 4579999
Q ss_pred HHHHHH-hCCCC--CCcchhcccccccccHHHHHHHHHHHH-HccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHH
Q 023626 149 LDYLTK-LGVKK--LNVPSTLNARLLNTRVERLRETLRFLR-SIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVE 224 (279)
Q Consensus 149 i~~L~~-lG~~~--~~~li~~~P~ll~~s~~~l~~~v~~L~-~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~ 224 (279)
+..|++ +-++- ..+++..||.++.-+...++-+++|-- .+|+...++.+ ...+.||+ .+|+.+.-|+.+
T Consensus 107 vrllkekclftvqqvtkilhscpsvlredlgqleykfqyayfrmgikhpdivk-----seylqysl-tkikqrhiyler- 179 (239)
T 4fzv_B 107 VRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVK-----SEYLQYSL-TKIKQRHIYLER- 179 (239)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHCGGGGTSCTTHHHHHHHHHHHTSCCCHHHHHH-----TTGGGSCH-HHHHHHHHHHHH-
T ss_pred HHHHHHhHHhhHHHHHHHHHhCcHHHHHHHhhhhhhHhHHHHHccCCCcchhH-----HHHHHHHH-HHHHHHHhHHHH-
Confidence 999998 55553 447889999999999999999999988 99999888763 36789999 899999999986
Q ss_pred hCC
Q 023626 225 MER 227 (279)
Q Consensus 225 mg~ 227 (279)
+|.
T Consensus 180 lgr 182 (239)
T 4fzv_B 180 LGR 182 (239)
T ss_dssp HTC
T ss_pred hcc
Confidence 664
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=86.48 E-value=0.8 Score=29.67 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=21.4
Q ss_pred hHHHHHHHHhhCCCChhHHHHHHhh
Q 023626 70 QILSTIDFFKSKGLTNGHFSRLAYL 94 (279)
Q Consensus 70 ~l~~~i~~L~~~G~s~~~i~~li~~ 94 (279)
.+..+++||++.|++.++|..++.+
T Consensus 29 p~~~K~~FL~sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 29 PLATRRAFLKKKGLTDEEIDLAFQQ 53 (54)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3667899999999999999988876
No 10
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=84.85 E-value=2.4 Score=27.38 Aligned_cols=36 Identities=11% Similarity=-0.121 Sum_probs=28.6
Q ss_pred HHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHh
Q 023626 91 LAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIG 132 (279)
Q Consensus 91 li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~ 132 (279)
-+..+|.+-.. .+..+++||+ ..|++.++|...+.+
T Consensus 18 ~FL~dp~V~~s-----p~~~K~~FL~-sKGLt~~EI~~Al~r 53 (54)
T 3ff5_A 18 KFLQNSRVRQS-----PLATRRAFLK-KKGLTDEEIDLAFQQ 53 (54)
T ss_dssp HHHHCTTGGGS-----CHHHHHHHHH-HTTCCHHHHHHHHHH
T ss_pred HHhCChhhhcC-----CHHHHHHHHH-HcCCCHHHHHHHHHc
Confidence 35567777665 4678999999 699999999988875
No 11
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=80.82 E-value=6.3 Score=30.91 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=53.8
Q ss_pred CCCCCCCCcccc-CC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCCh---
Q 023626 50 IGVIDPSTKPHK-LP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASV--- 123 (279)
Q Consensus 50 ~Gls~~~~ii~~-~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~--- 123 (279)
-|.|.+..-.+. .| +..+.+.+.+.+--|..-|+++++|+-++...-.+-....- .=.....+|+ +.|+.+
T Consensus 11 kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v--tG~kI~rILk-~~glapeiP 87 (153)
T 2xzm_O 11 KGISGSALPFKRRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGIPQVRFL--TGQKILRILK-KNGCAPQLP 87 (153)
T ss_dssp CCCCCCCCCSCCSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCCSCHHHH--HSSCHHHHHH-HTTCCCSSC
T ss_pred CCccCCCCCCCCCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCCCCeeee--ccchHHHHHH-HcCCCCCCc
Confidence 467655443344 45 78888999999999999999999999999876444222111 1123457787 688753
Q ss_pred HHHHHHHHh
Q 023626 124 EERRGLIIG 132 (279)
Q Consensus 124 ~~i~~ll~~ 132 (279)
+|+-.++.+
T Consensus 88 EDL~~LikK 96 (153)
T 2xzm_O 88 EDLYFLIKK 96 (153)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666553
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=80.45 E-value=1.8 Score=29.55 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred hHHHHHHHHhhCCCChhHHHHHHhhC
Q 023626 70 QILSTIDFFKSKGLTNGHFSRLAYLC 95 (279)
Q Consensus 70 ~l~~~i~~L~~~G~s~~~i~~li~~~ 95 (279)
.+..+++||++.|++.++|..++.+.
T Consensus 34 p~~~K~~FL~sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 34 PLATRRAFLKKKGLTDEEIDMAFQQS 59 (70)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 36788999999999999999999885
No 13
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=79.13 E-value=6.6 Score=30.74 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=53.3
Q ss_pred CCCCCCCCcccc-CC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCCh---
Q 023626 50 IGVIDPSTKPHK-LP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASV--- 123 (279)
Q Consensus 50 ~Gls~~~~ii~~-~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~--- 123 (279)
-|.|.+..-.++ -| +..+.+.+.+.+--|.+-|+++++|+-++...-.+-....- .=.....+|+ +.|+..
T Consensus 9 kG~S~S~~P~~~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GIp~Vk~v--tG~kI~rILk-~~glapeiP 85 (151)
T 3u5c_N 9 KGISSSAIPYSRNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAHGVTQARVI--TGNKIMRILK-SNGLAPEIP 85 (151)
T ss_dssp CCCCCCCCCSCCSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCSCHHHH--SSSCHHHHHH-HTTCCCSSC
T ss_pred CCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccCCCCCeeee--cccHHHHHHH-hCCCCCCCc
Confidence 467655433333 35 78888999999999999999999999999876443222111 1123556787 688753
Q ss_pred HHHHHHHHh
Q 023626 124 EERRGLIIG 132 (279)
Q Consensus 124 ~~i~~ll~~ 132 (279)
+|+..++.+
T Consensus 86 EDL~~LikK 94 (151)
T 3u5c_N 86 EDLYYLIKK 94 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 14
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=74.12 E-value=7 Score=26.56 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=28.8
Q ss_pred HhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHHhC
Q 023626 92 AYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLIIGC 133 (279)
Q Consensus 92 i~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~~~ 133 (279)
+..+|.+-.. .+..+++||+ ..|++.++|...+.+.
T Consensus 24 FLqdp~V~~s-----p~~~K~~FL~-sKGLt~eEI~~Al~ra 59 (70)
T 2w84_A 24 FLQNSRVRQS-----PLATRRAFLK-KKGLTDEEIDMAFQQS 59 (70)
T ss_dssp HHCSTTGGGS-----CHHHHHHHHH-HTTCCHHHHHHHHHHH
T ss_pred HhCChhhhhC-----CHHHHHHHHH-HcCCCHHHHHHHHHHc
Confidence 4456777665 3678999999 6999999999988774
No 15
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=73.71 E-value=3.5 Score=25.86 Aligned_cols=38 Identities=18% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHH
Q 023626 178 LRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAV 223 (279)
Q Consensus 178 l~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~ 223 (279)
-+.+++-|.+|||+++++...++.+- .+ +..-++||..
T Consensus 8 ~~~~i~~L~~MGF~~~~a~~AL~~~~----~n----~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSMGYERERVVAALRASY----NN----PHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHTTT----SC----SHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCHHHHHHHHHHhC----CC----HHHHHHHHHh
Confidence 56788889999999999998888543 23 3466778765
No 16
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=69.19 E-value=3.4 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=25.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHH
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLA 222 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~ 222 (279)
++.++-|.+|||+++++.+.+..+ ..+ +..-++||.
T Consensus 5 e~~i~~L~~MGF~~~~a~~AL~~~----~~n----~e~A~~~L~ 40 (43)
T 2g3q_A 5 SLAVEELSGMGFTEEEAHNALEKC----NWD----LEAATNFLL 40 (43)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHH----TSC----HHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh----CcC----HHHHHHHHH
Confidence 356788999999999988887753 223 345566664
No 17
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=66.87 E-value=4.1 Score=28.10 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=24.1
Q ss_pred CCCCchhhHHHHHhCCCCCCCCccccCCCcchhhhHHHHHHHHhh
Q 023626 36 FKTSHRENLRYLRAIGVIDPSTKPHKLPSPEVVSQILSTIDFFKS 80 (279)
Q Consensus 36 ~~~~~~~~l~~L~~~Gls~~~~ii~~~Pl~~~~~~l~~~i~~L~~ 80 (279)
.....++.++-|.++||++.+.+++. |...-.++...+++|.+
T Consensus 25 pe~~ye~qi~qL~eMGF~dr~~~~~A--L~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 25 TEGRYQQELEELKALGFANRDANLQA--LVATDGDIHAAIEMLLG 67 (74)
T ss_dssp TTTTSHHHHHHHHHHTCCCHHHHHHH--HHHTTSCHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHcCCCcHHHHHHH--HHHhCCCHHHHHHHHHh
Confidence 34556677888888888543332222 22223455556666654
No 18
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=66.51 E-value=6.1 Score=23.11 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=19.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhcC
Q 023626 179 RETLRFLRSIGLNRREAAEFCARM 202 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~ 202 (279)
...++-|.++||++++..+.+..+
T Consensus 5 ~~~i~~L~~mGf~~~~a~~AL~~~ 28 (40)
T 1z96_A 5 NSKIAQLVSMGFDPLEAAQALDAA 28 (40)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc
Confidence 457788999999999988777654
No 19
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=66.34 E-value=4.6 Score=25.75 Aligned_cols=25 Identities=16% Similarity=0.106 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHh
Q 023626 176 ERLRETLRFLRSIGLNRREAAEFCA 200 (279)
Q Consensus 176 ~~l~~~v~~L~~~G~s~~~v~~~l~ 200 (279)
+.+...|+-|.++||+++++.+.+.
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~ 33 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALE 33 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456788889999999999988776
No 20
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=65.49 E-value=15 Score=29.08 Aligned_cols=49 Identities=12% Similarity=0.126 Sum_probs=38.1
Q ss_pred CCCCCCCCcccc-CC--CcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCcc
Q 023626 50 IGVIDPSTKPHK-LP--SPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQF 98 (279)
Q Consensus 50 ~Gls~~~~ii~~-~P--l~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~l 98 (279)
-|.|.+..-.++ -| +..+.+.+.+.|--|.+-|+++++|+-++.....+
T Consensus 9 kG~S~S~~P~~~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gi 60 (158)
T 3j20_Q 9 RGKSGSKRPPRTAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60 (158)
T ss_dssp SCCCCCCCCCCSSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCCCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCC
Confidence 467654433333 45 78889999999999999999999999999877554
No 21
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=61.57 E-value=10 Score=28.44 Aligned_cols=98 Identities=9% Similarity=0.063 Sum_probs=59.1
Q ss_pred chhhHHHHHhCCCCCCC--CccccCCCcchhhhHHHHHHHH------hhCCCChhHHHHHHhhCCccccccccCCchhhH
Q 023626 40 HRENLRYLRAIGVIDPS--TKPHKLPSPEVVSQILSTIDFF------KSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPV 111 (279)
Q Consensus 40 ~~~~l~~L~~~Gls~~~--~ii~~~Pl~~~~~~l~~~i~~L------~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~ 111 (279)
-+..++.|.++||+... +++... . ++....++|| .+.|++..++...+..+..--.... .-...
T Consensus 8 e~~~v~~l~~MGFp~~~~~kAl~~~--g---~~~e~amewL~~h~~L~d~~~d~~~~e~~l~~~~~~~~~~~---~~~~~ 79 (118)
T 4ae4_A 8 ERQCVETVVNMGYSYECVLRAMKAA--G---ANIEQILDYLFAHGQLCEKGFDPLLVEEALEMHQCSEEKMM---EFLQL 79 (118)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHH--C---SCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHCSSCHHHHH---HHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH--C---cCHHHHHHHHHHhchhcccCCChhhhHHHHHhccCCccccc---cCHHH
Confidence 34568999999995221 222221 1 2444555555 3678898888888875432111111 12345
Q ss_pred HHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHH
Q 023626 112 FDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTK 154 (279)
Q Consensus 112 v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~ 154 (279)
+.-|. ++||+.+.+.+.+..+- .++...++||..
T Consensus 80 v~~L~-eMGF~~~~a~~AL~~~~--------nd~erAlewL~~ 113 (118)
T 4ae4_A 80 MSKFK-EMGFELKDIKEVLLLHN--------NDQDNALEDLMA 113 (118)
T ss_dssp HHHHH-HTTCCHHHHHHHHHHTT--------TCHHHHHHHHHH
T ss_pred HHHHH-HcCCCHHHHHHHHHHcC--------CCHHHHHHHHHH
Confidence 77777 79999999999887641 245667777654
No 22
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=61.01 E-value=49 Score=24.65 Aligned_cols=40 Identities=10% Similarity=0.116 Sum_probs=29.4
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
.+.+.-|.+|||+.+++++.++.+- ..+..-+++|....|
T Consensus 77 ~~~v~~L~eMGF~~~~a~~AL~~~~--------nd~erAlewL~~~~~ 116 (118)
T 4ae4_A 77 LQLMSKFKEMGFELKDIKEVLLLHN--------NDQDNALEDLMARAG 116 (118)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTT--------TCHHHHHHHHHHHC-
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHHhcc
Confidence 3567888899999999998877432 456777888876544
No 23
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=60.10 E-value=10 Score=23.39 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHh
Q 023626 177 RLRETLRFLRSIGLNRREAAEFCA 200 (279)
Q Consensus 177 ~l~~~v~~L~~~G~s~~~v~~~l~ 200 (279)
.+...|.-|.++||+.+++.+.+.
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ 26 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALV 26 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHH
T ss_pred chHHHHHHHHHcCCCHHHHHHHHH
Confidence 367788899999999999987765
No 24
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.93 E-value=7.4 Score=23.95 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.3
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHH
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLA 222 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~ 222 (279)
...++-|.+|||+++++.+.+..+ . ++ ..-++||.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~~----~-n~----e~A~~~L~ 44 (47)
T 2ekk_A 10 QQQLQQLMDMGFTREHAMEALLNT----S-TM----EQATEYLL 44 (47)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHS----C-SH----HHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHc----C-CH----HHHHHHHH
Confidence 456777889999999999888865 2 44 35566654
No 25
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=59.84 E-value=5.8 Score=27.22 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=29.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHH
Q 023626 178 LRETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAV 223 (279)
Q Consensus 178 l~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~ 223 (279)
.+.+|+-|.+|||+++++...++.+= .++..-++||..
T Consensus 29 ~ee~I~~L~eMGF~r~~a~~AL~~~~--------~nve~Ave~Ll~ 66 (73)
T 1vg5_A 29 SEEQIQKLVAMGFDRTQVEVALAAAD--------DDLTVAVEILMS 66 (73)
T ss_dssp CHHHHHHHHTTTCCHHHHHHHHHHHT--------SCHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 56788889999999999998888531 245577888875
No 26
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=59.25 E-value=7.6 Score=25.73 Aligned_cols=38 Identities=11% Similarity=0.288 Sum_probs=28.1
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHH
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVE 224 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~ 224 (279)
.+.|+-|.+|||+++++.+.+..+= .++..-++||...
T Consensus 10 ~~~I~~L~~MGF~~~~a~~AL~~~~--------~nve~A~e~L~~~ 47 (63)
T 1wji_A 10 EKALKHITEMGFSKEASRQALMDNG--------NNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHTT--------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHHC
Confidence 3567779999999999888777541 2456778888764
No 27
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=57.84 E-value=31 Score=31.05 Aligned_cols=28 Identities=11% Similarity=-0.030 Sum_probs=21.9
Q ss_pred hhHHHHHHHHhhCCCChhHHHHHHhhCC
Q 023626 69 SQILSTIDFFKSKGLTNGHFSRLAYLCP 96 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~~i~~li~~~P 96 (279)
+.....|+-|.++||+++++.+.+...-
T Consensus 166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~ 193 (368)
T 1oqy_A 166 SEYETMLTEIMSMGYERERVVAALRASY 193 (368)
T ss_dssp TTHHHHHHHHHTTTCCSHHHHHHHHHSC
T ss_pred cchHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4567778888889999888888887543
No 28
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=57.33 E-value=9.1 Score=24.31 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHccC-ChHHHHHHHhcCCcccccChhhhHHHHHHHHHH
Q 023626 175 VERLRETLRFLRSIGL-NRREAAEFCARMPAIFGYNIEHHLKIKFEFLAV 223 (279)
Q Consensus 175 ~~~l~~~v~~L~~~G~-s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~ 223 (279)
.+..+.+++-|.+||| +++.+..++..+- ..+..-++||..
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~--------gnve~Ave~L~~ 49 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG--------GDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT--------SCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC--------CCHHHHHHHHHH
Confidence 3457888999999999 7777666655321 245566777764
No 29
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=57.29 E-value=22 Score=22.55 Aligned_cols=43 Identities=12% Similarity=0.155 Sum_probs=25.2
Q ss_pred hhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCC
Q 023626 69 SQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHA 121 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGl 121 (279)
+.+...|+-|.++|++.+++.+.+... . +++.-.-.+|+ ++.+
T Consensus 9 ~~~~~~Ia~Lm~mGFsr~~ai~AL~~a--------~-nnve~AaniLl-ef~~ 51 (52)
T 2ooa_A 9 ENVDAKIAKLMGEGYAFEEVKRALEIA--------Q-NNVEVARSILR-EFAF 51 (52)
T ss_dssp --CHHHHHHHHHTTCCHHHHHHHHHHT--------T-TCHHHHHHHHH-HHCC
T ss_pred CChHHHHHHHHHcCCCHHHHHHHHHHh--------C-CCHHHHHHHHH-HhcC
Confidence 344466777777777777777766532 1 35555556666 4544
No 30
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=57.12 E-value=20 Score=22.93 Aligned_cols=45 Identities=11% Similarity=0.203 Sum_probs=32.4
Q ss_pred chhhHHHHHHHhcCCChHHHHHHHHhCCcccccChhhhhHhHHHHHHHhCCCC
Q 023626 107 EIEPVFDFLITDLHASVEERRGLIIGCPQMLSSNVEYCLKPTLDYLTKLGVKK 159 (279)
Q Consensus 107 ~l~~~v~fL~~~lGls~~~i~~ll~~~P~iL~~s~~~~l~~~i~~L~~lG~~~ 159 (279)
...+.++-|. +.||+.+.+.+.+.. +-+ +.|++.++||..+++++
T Consensus 8 vn~qmlq~L~-eMGFd~erae~Alk~-----Tg~--~Gle~AmewL~k~~~~~ 52 (54)
T 2cos_A 8 VNRQMLQELV-NAGCDQEMAGRALKQ-----TGS--RSIEAALEYISKMSGPS 52 (54)
T ss_dssp CCHHHHHHHH-HHHCCHHHHHHHHHH-----HTS--CCHHHHHHHHHHHSCSC
T ss_pred hHHHHHHHHH-HcCCCHHHHHHHHHH-----hCc--ccHHHHHHHHHHhcCCC
Confidence 4566678888 688888877776665 222 45888888888887765
No 31
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.80 E-value=11 Score=24.12 Aligned_cols=23 Identities=17% Similarity=0.189 Sum_probs=19.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHh
Q 023626 178 LRETLRFLRSIGLNRREAAEFCA 200 (279)
Q Consensus 178 l~~~v~~L~~~G~s~~~v~~~l~ 200 (279)
....|+-|.++||+++++.+.+.
T Consensus 9 ~e~~I~~L~~lGF~r~~ai~AL~ 31 (53)
T 2d9s_A 9 LSSEIERLMSQGYSYQDIQKALV 31 (53)
T ss_dssp SHHHHHHHHHHTCCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHH
Confidence 45668889999999999988776
No 32
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=56.17 E-value=9.6 Score=26.80 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=31.6
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
+.+|+-|.+|||+++++.++++.+- ..+..-++||....|
T Consensus 30 ee~I~~Lv~MGF~~~~A~~AL~~t~--------gdve~A~e~L~sh~~ 69 (83)
T 1veg_A 30 QESINQLVYMGFDTVVAEAALRVFG--------GNVQLAAQTLAHHGG 69 (83)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHTT--------TCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCCC
Confidence 5677889999999999998877432 346788999998766
No 33
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.55 E-value=10 Score=24.90 Aligned_cols=40 Identities=13% Similarity=0.262 Sum_probs=30.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
...++-|.+|||+++++.+.++.+- . .+..-++||...+.
T Consensus 10 ~~~v~~L~~MGF~~~~a~~AL~~t~----~----nve~A~e~L~~~~~ 49 (63)
T 2dak_A 10 EDCVTTIVSMGFSRDQALKALRATN----N----SLERAVDWIFSHID 49 (63)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT----S----CSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC----C----CHHHHHHHHHhCCC
Confidence 4567778999999999998888652 2 35577889887543
No 34
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=54.31 E-value=11 Score=25.73 Aligned_cols=37 Identities=11% Similarity=0.102 Sum_probs=27.5
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHH
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAV 223 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~ 223 (279)
..+++-|.+|||+++++.+.++.+- ..+..-++||..
T Consensus 30 ~~~v~~L~~MGF~~~~a~~AL~~t~--------~nve~Ave~L~~ 66 (73)
T 1wiv_A 30 QSSVDTLLSFGFAEDVARKALKASG--------GDIEKATDWVFN 66 (73)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHTT--------SCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC--------CCHHHHHHHHHh
Confidence 4567778999999999998887532 245577888875
No 35
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=52.03 E-value=14 Score=23.71 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHh
Q 023626 177 RLRETLRFLRSIGLNRREAAEFCA 200 (279)
Q Consensus 177 ~l~~~v~~L~~~G~s~~~v~~~l~ 200 (279)
-.+..|.-|.++||+.+++.+.+.
T Consensus 6 p~e~~Ia~L~smGfsr~da~~AL~ 29 (56)
T 2juj_A 6 QLSSEIENLMSQGYSYQDIQKALV 29 (56)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CChHHHHHHHHcCCCHHHHHHHHH
Confidence 466788889999999999987765
No 36
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=50.03 E-value=45 Score=20.92 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHhhCCC-ChhHHHHHHhhCCccccccccCCchhhHHHHHH
Q 023626 68 VSQILSTIDFFKSKGL-TNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLI 116 (279)
Q Consensus 68 ~~~l~~~i~~L~~~G~-s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~ 116 (279)
.+.....++-|.++|| +.+...+.+..+- .++...+++|.
T Consensus 8 e~~~~~~l~~L~~MGF~~~~~~~~AL~~t~---------gnve~Ave~L~ 48 (53)
T 2knz_A 8 EVRFQQQLEQLNSMGFINREANLQALIATG---------GDINAAIERLL 48 (53)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHHT---------SCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCCHHHHHHHHHHhC---------CCHHHHHHHHH
Confidence 3556667777777777 5555455444211 24666666666
No 37
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=47.40 E-value=15 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHccC-ChHHHHHHHh
Q 023626 177 RLRETLRFLRSIGL-NRREAAEFCA 200 (279)
Q Consensus 177 ~l~~~v~~L~~~G~-s~~~v~~~l~ 200 (279)
..+.+++-|.+||| +++.+.+++.
T Consensus 11 ~~~~~l~~L~~MGF~~~~~~~~AL~ 35 (52)
T 2jy5_A 11 RFQQQLEQLSAMGFLNREANLQALI 35 (52)
T ss_dssp TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 35678888999999 7766665555
No 38
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.05 E-value=15 Score=25.03 Aligned_cols=41 Identities=7% Similarity=0.099 Sum_probs=29.9
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
...++-|.+|||+++++.+.++.+-. ..++.-++||...+.
T Consensus 10 e~~v~~L~~MGF~~~~a~~AL~~t~n-------~~ve~A~ewL~~~~~ 50 (74)
T 2dag_A 10 ESVIIQLVEMGFPMDACRKAVYYTGN-------SGAEAAMNWVMSHMD 50 (74)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHTS-------CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CCHHHHHHHHHhCCC
Confidence 34566788999999999888774321 246688999998654
No 39
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=43.98 E-value=4.1 Score=26.17 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=7.0
Q ss_pred hhhHHHHHhCCCC
Q 023626 41 RENLRYLRAIGVI 53 (279)
Q Consensus 41 ~~~l~~L~~~Gls 53 (279)
++.++-|.++||+
T Consensus 10 ~~~l~~L~~MGF~ 22 (54)
T 2dah_A 10 QVQLEQLRSMGFL 22 (54)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCC
Confidence 4455555555554
No 40
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=43.97 E-value=16 Score=24.96 Aligned_cols=21 Identities=10% Similarity=0.074 Sum_probs=9.3
Q ss_pred HHHHHHhhCCCChhHHHHHHh
Q 023626 73 STIDFFKSKGLTNGHFSRLAY 93 (279)
Q Consensus 73 ~~i~~L~~~G~s~~~i~~li~ 93 (279)
+.|+-|.++||+.++..+.+.
T Consensus 31 e~I~~L~eMGF~r~~a~~AL~ 51 (73)
T 1vg5_A 31 EQIQKLVAMGFDRTQVEVALA 51 (73)
T ss_dssp HHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 334444444444444444444
No 41
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=43.69 E-value=7.8 Score=24.01 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=17.1
Q ss_pred HHHHHHHHccCChHHHHHHHhcC
Q 023626 180 ETLRFLRSIGLNRREAAEFCARM 202 (279)
Q Consensus 180 ~~v~~L~~~G~s~~~v~~~l~~~ 202 (279)
..|+-|.++||++.++.+.+..+
T Consensus 6 eaI~rL~~mGF~~~~a~~Al~a~ 28 (47)
T 1dv0_A 6 EAIERLKALGFPESLVIQAYFAC 28 (47)
T ss_dssp HHHTTTTTTTCCHHHHHHHHTTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHc
Confidence 45666788999999887776544
No 42
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=42.10 E-value=20 Score=23.71 Aligned_cols=39 Identities=8% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHh
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEM 225 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~m 225 (279)
.+.|+-|..|||+.++..+.++... .++++-.+||...+
T Consensus 20 ~e~V~~LvsMGFs~~qA~kALKat~--------~NvErAaDWLFSH~ 58 (63)
T 1wgn_A 20 RQCVETVVNMGYSYECVLRAMKKKG--------ENIEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC--------SCHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC--------CCHHHHHHHHHhCC
Confidence 4568889999999999998888543 35678888887653
No 43
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.17 E-value=24 Score=24.66 Aligned_cols=40 Identities=20% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
...++-|.+|||+++++.+.+..+ . ..+..-++||...++
T Consensus 30 e~~i~~L~~MGF~~~~a~~AL~~t----~----~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 30 EAALRQLTEMGFPENRATKALQLN----H----MSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT----T----SCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHh----C----CCHHHHHHHHHHCCC
Confidence 345666889999999999888754 1 245678999987554
No 44
>2c35_A Human RPB4, DNA-directed RNA polymerase II 16 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: a.60.8.2
Probab=40.11 E-value=29 Score=27.08 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=36.9
Q ss_pred ccCCCcchhhhHHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHH
Q 023626 60 HKLPSPEVVSQILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLI 130 (279)
Q Consensus 60 ~~~Pl~~~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll 130 (279)
.+++...+.+.+....+.|..+|+++.++..++.-+|. +.+ .++..+.-+. .-++++++..++
T Consensus 79 ~~F~k~k~~e~~~~l~e~L~~~~L~~~E~a~L~NL~P~----t~d--Ear~lipsl~--~r~sdEeLe~IL 141 (152)
T 2c35_A 79 ARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPE----TAE--ESKALIPSLE--GRFEDEELQQIL 141 (152)
T ss_dssp HHTCSCCSHHHHHHHHHHHHTSSCCHHHHHHHHHHCCS----SHH--HHHHHCGGGT--TTSCHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHhcCCCHHHHHHhccCCCC----CHH--HHHHHHHhhc--cCCCHHHHHHHH
Confidence 33442345677777777777788888888888777776 222 3444444443 234555555444
No 45
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=39.26 E-value=23 Score=23.36 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=26.9
Q ss_pred HHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHH
Q 023626 180 ETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVE 224 (279)
Q Consensus 180 ~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~ 224 (279)
..++-|.+|||+++++.+.+..+-. ..+..-++||...
T Consensus 21 ~~i~~L~~MGF~~~~a~~AL~~t~~-------~nve~A~ewL~~~ 58 (64)
T 2cpw_A 21 SALDVLLSMGFPRARAQKALASTGG-------RSVQTACDWLFSH 58 (64)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTT-------SCHHHHHHHHHSC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCC-------CCHHHHHHHHHhC
Confidence 3566688999999999888775321 2456778888753
No 46
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=37.83 E-value=9.9 Score=28.13 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhhCCCChh-HHHHHHhhCCccccccccCCchhhHHHHHH
Q 023626 69 SQILSTIDFFKSKGLTNG-HFSRLAYLCPQFFSINFDPSEIEPVFDFLI 116 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~-~i~~li~~~P~lL~~~~e~~~l~~~v~fL~ 116 (279)
+...+.++-|+++||+++ ...+++.. .- .++...+++|.
T Consensus 64 ~~~~~qL~qL~eMGF~d~~~ni~AL~~-------t~--Gdve~AVe~L~ 103 (108)
T 2cwb_A 64 SQWQPQLQQLRDMGIQDDELSLRALQA-------TG--GDIQAALELIF 103 (108)
T ss_dssp CTTHHHHHHHHTTTCCCHHHHHHHHHH-------HT--SCHHHHHHHHH
T ss_pred cchHHHHHHHHHcCCCCHHHHHHHHHH-------hC--CCHHHHHHHHH
Confidence 445667777788887653 33343331 21 35666777776
No 47
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.33 E-value=44 Score=26.32 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=36.3
Q ss_pred hcccccccccHHHHHHHHHHHHHccCChHHHHHHHhcCCcc
Q 023626 165 TLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAI 205 (279)
Q Consensus 165 ~~~P~ll~~s~~~l~~~v~~L~~~G~s~~~v~~~l~~~P~i 205 (279)
...|..+..+.+.+++.|.-|.+-|++.++|+.+++..-.|
T Consensus 20 ~~~P~W~~~~~eev~~~i~klakkG~~pSqIG~~LRD~~gi 60 (158)
T 3j20_Q 20 TAPPIWVEYTVEEIENLVVKLRKEGYSTAMIGTILRDQYGI 60 (158)
T ss_dssp SSCCSSSCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhHHHhccCCC
Confidence 45688999999999999999999999999999999877554
No 48
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=36.37 E-value=32 Score=26.18 Aligned_cols=53 Identities=19% Similarity=0.114 Sum_probs=31.5
Q ss_pred HHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHHHHH
Q 023626 74 TIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRGLII 131 (279)
Q Consensus 74 ~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~ 131 (279)
.+..++++|++..++.-++. +..+..+ +.-.|..+-|.+.+|++..+|.+++.
T Consensus 21 LL~~y~~LgLs~~E~~lLl~----L~~~~~~-g~~~ps~~~LA~~~~~s~~~v~~~L~ 73 (135)
T 2v79_A 21 LLTHYKQLGLNETELILLLK----IKMHLEK-GSYFPTPNQLQEGMSISVEECTNRLR 73 (135)
T ss_dssp HHHHHHHHTCCHHHHHHHHH----HHHHHTT-TCCSCCHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHH----HHHHHhc-CCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 35566677888777766555 3333323 33445566666667777766665553
No 49
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=35.67 E-value=59 Score=23.94 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=25.7
Q ss_pred HhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcC
Q 023626 78 FKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLH 120 (279)
Q Consensus 78 L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lG 120 (279)
-+.+|++..+|..+-..+|. +.. +.+...+..+++.-|
T Consensus 42 AR~LGlse~dId~I~~~~p~----~l~-eq~~qmL~~W~~r~G 79 (114)
T 2of5_A 42 VLSLGLSQTDIYRCKANHPH----NVQ-SQVVEAFIRWRQRFG 79 (114)
T ss_dssp HHTTTCCHHHHHHHHHHCSS----CHH-HHHHHHHHHHHHHHG
T ss_pred HHHcCCCHHHHHHHHHHCCC----CHH-HHHHHHHHHHHHHHC
Confidence 35689999999999999984 332 355566555554333
No 50
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=35.05 E-value=32 Score=24.12 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=29.2
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHH
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVE 224 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~ 224 (279)
.+.++-|.+|||+++++.+++.. .+ ..+..-++||...
T Consensus 22 ~~~I~qL~~MGF~~~~a~~AL~~------~n--~n~e~A~ewL~~h 59 (85)
T 2dkl_A 22 SRLIKQLTDMGFPREPAEEALKS------NN--MNLDQAMSALLEK 59 (85)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH------TT--SCHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH------cC--CCHHHHHHHHHHC
Confidence 77888899999999998877742 22 3567889999864
No 51
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=35.00 E-value=49 Score=25.86 Aligned_cols=41 Identities=12% Similarity=0.076 Sum_probs=35.7
Q ss_pred hcccccccccHHHHHHHHHHHHHccCChHHHHHHHhcCCcc
Q 023626 165 TLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMPAI 205 (279)
Q Consensus 165 ~~~P~ll~~s~~~l~~~v~~L~~~G~s~~~v~~~l~~~P~i 205 (279)
...|..+..+.+.+++.|.-|.+-|++.+||+-+++..=.|
T Consensus 22 ~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~GI 62 (153)
T 2xzm_O 22 RRSPKWLHMTPSTVVDLSVKLAKKGLTPSQIGVILRDQHGI 62 (153)
T ss_dssp CSCCSSCCCCHHHHHHHHHHHHHTTCCHHHHHHHHHHSSCC
T ss_pred CCCCccccCCHHHHHHHHHHHHHCCCCHHHhhhHHhhcCCC
Confidence 35688999999999999999999999999999999876443
No 52
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=34.90 E-value=64 Score=23.79 Aligned_cols=38 Identities=21% Similarity=0.187 Sum_probs=25.2
Q ss_pred HhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcC
Q 023626 78 FKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLH 120 (279)
Q Consensus 78 L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lG 120 (279)
-+.+|++..+|..+-..+|. +.. +.+...+..+++.-|
T Consensus 42 AR~LGlse~dId~I~~~~p~----dl~-eq~~qmL~~W~~r~G 79 (115)
T 2o71_A 42 VLSLGLSQTDIYRCKANHPH----NVQ-SQVVEAFIRWRQRFG 79 (115)
T ss_dssp HHHTTCCHHHHHHHHHHCTT----CHH-HHHHHHHHHHHHHHG
T ss_pred HHHcCCCHHHHHHHHHHCCC----CHH-HHHHHHHHHHHHHHC
Confidence 35689999999999999984 332 355555555553333
No 53
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=34.18 E-value=39 Score=20.59 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHccCCh-HHHHHHHh
Q 023626 176 ERLRETLRFLRSIGLNR-REAAEFCA 200 (279)
Q Consensus 176 ~~l~~~v~~L~~~G~s~-~~v~~~l~ 200 (279)
+..+.+++-|.+|||+. +.+.+++.
T Consensus 5 ~~~~~~i~~L~~MGF~d~~~~~~AL~ 30 (46)
T 2bwb_A 5 ERYEHQLRQLNDMGFFDFDRNVAALR 30 (46)
T ss_dssp HHTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 44678888899999964 44455544
No 54
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=33.20 E-value=36 Score=23.76 Aligned_cols=41 Identities=17% Similarity=0.257 Sum_probs=29.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 179 RETLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
...++-|.+|||+++.+.+.+... .+ ..+..-++||...+.
T Consensus 30 e~~v~~L~~MGF~~~~a~~AL~~t-----~n--~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 30 EEIVAQLVSMGFSQLHCQKAAINT-----SN--AGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHT-----TT--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH-----cC--CCHHHHHHHHHhCCC
Confidence 345566889999999988776632 11 256688999988654
No 55
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.13 E-value=31 Score=25.22 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHc-cCChHHHHHHHhcCCcccccChhhhHHHHHHHHHH
Q 023626 176 ERLRETLRFLRSI-GLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAV 223 (279)
Q Consensus 176 ~~l~~~v~~L~~~-G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~ 223 (279)
..++++|+.|.++ ||+++++..+|..+ + -.+..-+++|.+
T Consensus 37 ~d~eekVk~L~EmtG~seeeAr~AL~~~------n--gDl~~AI~~Lle 77 (104)
T 1wj7_A 37 ADFEEKVKQLIDITGKNQDECVIALHDC------N--GDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH------T--SCHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhCCCHHHHHHHHHHc------C--CCHHHHHHHHHh
Confidence 3578899999987 99999998776643 2 245666777775
No 56
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=33.12 E-value=48 Score=25.86 Aligned_cols=39 Identities=10% Similarity=0.037 Sum_probs=34.8
Q ss_pred hcccccccccHHHHHHHHHHHHHccCChHHHHHHHhcCC
Q 023626 165 TLNARLLNTRVERLRETLRFLRSIGLNRREAAEFCARMP 203 (279)
Q Consensus 165 ~~~P~ll~~s~~~l~~~v~~L~~~G~s~~~v~~~l~~~P 203 (279)
...|..+..+.+.+++.|.-|.+-|++.++|+-+++..=
T Consensus 20 ~~~P~W~~~~~eeVe~~I~klakkG~tpSqIG~iLRD~~ 58 (151)
T 3u5c_N 20 RNAPAWFKLSSESVIEQIVKYARKGLTPSQIGVLLRDAH 58 (151)
T ss_dssp CSCCSSCCSCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCCCHHHhhhHHhccC
Confidence 456889999999999999999999999999999988763
No 57
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=33.11 E-value=24 Score=23.22 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=28.3
Q ss_pred HHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 181 TLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 181 ~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
.++-|.+|||+++++.+.++.+ .+ ..++.-++||...+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t-----~~--~nve~A~ewLl~~~~ 50 (64)
T 1whc_A 12 ALESLIEMGFPRGRAEKALALT-----GN--QGIEAAMDWLMEHED 50 (64)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----cC--CCHHHHHHHHHhCCC
Confidence 4566889999999998887732 12 246788999987653
No 58
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=32.86 E-value=63 Score=23.91 Aligned_cols=49 Identities=12% Similarity=0.082 Sum_probs=32.6
Q ss_pred HHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcCCChHHHHH
Q 023626 75 IDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLHASVEERRG 128 (279)
Q Consensus 75 i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ 128 (279)
-+|.+.+|+++.+|..+-..+|.=+. +...+.+.-++...|-....+..
T Consensus 29 K~~aRkLGLse~~Id~Ie~~~~r~l~-----Eq~yqmLr~W~~~~G~~~Atv~~ 77 (112)
T 1ich_A 29 KEFVKRLGLSDHEIDRLELQNGRCLR-----EAQYSMLATWRRRTPRREATLEL 77 (112)
T ss_dssp HHHHHHHTCCHHHHHHHHHHCCSCHH-----HHHHHHHHHHHHHSCCSSCHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHCcCChH-----HHHHHHHHHHHHhcCCCCCcHHH
Confidence 45667889999999998888886533 25666777666555533333333
No 59
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=30.14 E-value=60 Score=21.13 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=22.5
Q ss_pred hhHHHHHHHHhhCCCChhHHHHHHhhC
Q 023626 69 SQILSTIDFFKSKGLTNGHFSRLAYLC 95 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~~i~~li~~~ 95 (279)
+...+.++.|..+|++..++.+++...
T Consensus 15 ~~~~ea~~AL~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 15 EAAEEAVMALAALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345778999999999999999988764
No 60
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.89 E-value=46 Score=21.48 Aligned_cols=40 Identities=20% Similarity=0.174 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHccCC-hHHHHHHHhcCCcccccChhhhHHHHHHHHHH
Q 023626 176 ERLRETLRFLRSIGLN-RREAAEFCARMPAIFGYNIEHHLKIKFEFLAV 223 (279)
Q Consensus 176 ~~l~~~v~~L~~~G~s-~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~ 223 (279)
+..+.+++-|.+|||+ ++.+.+++.. +- .++..-+++|..
T Consensus 15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~-------~~-gnve~Ave~L~~ 55 (58)
T 1wr1_B 15 ERYEHQLRQLNDMGFFDFDRNVAALRR-------SG-GSVQGALDSLLN 55 (58)
T ss_dssp HHTHHHHHHHHHHTCCCHHHHHHHHHH-------HT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHH-------hC-CCHHHHHHHHHh
Confidence 4578889999999996 4454555442 21 345566777654
No 61
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.44 E-value=1e+02 Score=22.01 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=8.9
Q ss_pred hhHHHHHhCCCCC
Q 023626 42 ENLRYLRAIGVID 54 (279)
Q Consensus 42 ~~l~~L~~~Gls~ 54 (279)
.+.+||.++|+.+
T Consensus 34 ~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 34 QVCSFLRRGGFEE 46 (103)
T ss_dssp HHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCCh
Confidence 4577777777743
No 62
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=29.26 E-value=41 Score=22.11 Aligned_cols=39 Identities=15% Similarity=0.092 Sum_probs=28.4
Q ss_pred HHHHHHHccCChHHHHHHHhcCCcccccChhhhHHHHHHHHHHHhC
Q 023626 181 TLRFLRSIGLNRREAAEFCARMPAIFGYNIEHHLKIKFEFLAVEME 226 (279)
Q Consensus 181 ~v~~L~~~G~s~~~v~~~l~~~P~iL~~s~e~~i~~k~~fL~~~mg 226 (279)
.++-|.+|||+++.+.+.+... .+ ..++.-++||...+.
T Consensus 12 ~v~~L~~MGF~~~~a~~AL~~t-----~n--~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 12 LLEPLLAMGFPVHTALKALAAT-----GR--KTAEEALAWLHDHCN 50 (64)
T ss_dssp SHHHHHHTSCCHHHHHHHHHHH-----TS--CCHHHHHHHHHHHSS
T ss_pred HHHHHHHcCCCHHHHHHHHHHh-----CC--CCHHHHHHHHHhCCC
Confidence 4566889999999988877632 11 256788999998654
No 63
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=28.94 E-value=69 Score=18.98 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=17.1
Q ss_pred hhHHHHHHHHhhCCCChhHHHHHH
Q 023626 69 SQILSTIDFFKSKGLTNGHFSRLA 92 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~~i~~li 92 (279)
..+..-++.|..-||++++++.+-
T Consensus 3 aalkselqalkkegfspeelaale 26 (48)
T 1g6u_A 3 AALKSELQALKKEGFSPEELAALE 26 (48)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345666777888888888887543
No 64
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=28.49 E-value=43 Score=23.43 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=19.0
Q ss_pred HHHHHHHHHccCChHHHHHHHhc
Q 023626 179 RETLRFLRSIGLNRREAAEFCAR 201 (279)
Q Consensus 179 ~~~v~~L~~~G~s~~~v~~~l~~ 201 (279)
-..|..++++|||-++|..++..
T Consensus 6 L~~I~~lr~lGfsL~eIk~~l~~ 28 (99)
T 1q08_A 6 LKFIRHARQLGFSLESIRELLSI 28 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHH
Confidence 35677888999999999998863
No 65
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=27.78 E-value=46 Score=27.04 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHhcC
Q 023626 177 RLRETLRFLRSIGLNRREAAEFCARM 202 (279)
Q Consensus 177 ~l~~~v~~L~~~G~s~~~v~~~l~~~ 202 (279)
..+++|+-|.+|||+++++..++.++
T Consensus 162 ~~eekV~~l~~MGf~~~~a~~AL~~~ 187 (201)
T 3k9o_A 162 EYTKKIENLCAMGFDRNAVIVALSSK 187 (201)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHT
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHc
Confidence 46889999999999999998887765
No 66
>3oq9_A Tumor necrosis factor receptor superfamily member; apoptosis, DISC, FAS; 6.80A {Mus musculus}
Probab=27.35 E-value=1.6e+02 Score=20.49 Aligned_cols=45 Identities=9% Similarity=0.067 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcC
Q 023626 71 ILSTIDFFKSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLH 120 (279)
Q Consensus 71 l~~~i~~L~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lG 120 (279)
+...-+|-+.+|+++.+|..+-..+|.=+. | ...+.+.-+....|
T Consensus 12 ~~~wK~~~R~LGlse~~Id~I~~~~~~d~~---E--q~~qmL~~W~~~~g 56 (86)
T 3oq9_A 12 IQEAKKFARENNIKEGKIDEIMHDSIQDTA---E--QKVQLLLCWYQSHG 56 (86)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHTCTTCCT---T--HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCCHhHHHHHHHhCCCChH---H--HHHHHHHHHHHHhC
Confidence 344556778899999999999988887433 2 55566666654454
No 67
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=25.85 E-value=1.4e+02 Score=19.34 Aligned_cols=56 Identities=21% Similarity=0.163 Sum_probs=30.5
Q ss_pred HHHHHHHHHH-HccCChHHHHHHHhcCCccc--------ccChhhhHHHHHHHHHHHhCCChHHHh
Q 023626 177 RLRETLRFLR-SIGLNRREAAEFCARMPAIF--------GYNIEHHLKIKFEFLAVEMERSLEELK 233 (279)
Q Consensus 177 ~l~~~v~~L~-~~G~s~~~v~~~l~~~P~iL--------~~s~e~~i~~k~~fL~~~mg~~~~~i~ 233 (279)
.+..++..++ ..|++..++++.+-..+.-+ ..+. +.+..-++.+...+|++++++.
T Consensus 10 ~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~~~~~~-~~l~~~~~~l~~~~~v~~~~l~ 74 (84)
T 2ef8_A 10 CLVQLLTKLRKEASLSQSELAIFLGLSQSDISKIESFERRLDA-LELFELLEVVASRLGLPMDILL 74 (84)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTSSCCBH-HHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHcCCCCCCH-HHHHHHHHHHccccCCCHHHHH
Confidence 4555666565 66666666666554333322 1222 2344445555556688877764
No 68
>4ayb_F DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_F 2y0s_F 2waq_F 4b1o_F 4b1p_U 2pmz_F 3hkz_F
Probab=25.44 E-value=57 Score=24.03 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=24.3
Q ss_pred hhhhHHHHHHHHhhCCCChhHHHHHHhhCCc
Q 023626 67 VVSQILSTIDFFKSKGLTNGHFSRLAYLCPQ 97 (279)
Q Consensus 67 ~~~~l~~~i~~L~~~G~s~~~i~~li~~~P~ 97 (279)
+.+.....++.|.+.|+.+..++++..-+|.
T Consensus 48 ~~e~a~~l~e~L~~~~l~~~~~a~IanL~P~ 78 (113)
T 4ayb_F 48 DAESAQKVVEELSSIISREDVRAVLASICPI 78 (113)
T ss_dssp CHHHHHHHHHHHHTTCCCHHHHHHHHHHCCC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHcCCC
Confidence 4466777778888888888888888888875
No 69
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=24.10 E-value=1.5e+02 Score=21.33 Aligned_cols=37 Identities=5% Similarity=0.135 Sum_probs=24.5
Q ss_pred hhCCCChhHHHHHHhhCCccccccccCCchhhHHHHHHHhcC
Q 023626 79 KSKGLTNGHFSRLAYLCPQFFSINFDPSEIEPVFDFLITDLH 120 (279)
Q Consensus 79 ~~~G~s~~~i~~li~~~P~lL~~~~e~~~l~~~v~fL~~~lG 120 (279)
+.+|++..+|..+-..+|. +.. ++....+..++..-|
T Consensus 37 r~Lg~s~~~I~~I~~~~p~----~~~-eq~~~mL~~W~~~~g 73 (111)
T 2yqf_A 37 RELQFSVEDINRIRVENPN----SLL-EQSVALLNLWVIREG 73 (111)
T ss_dssp HHTTCCHHHHHHHHHHSCS----CHH-HHHHHHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHCCC----CHH-HHHHHHHHHHHHhhC
Confidence 4689999999999999983 222 345555555554344
No 70
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.46 E-value=1.7e+02 Score=20.36 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=31.0
Q ss_pred hhHHHHHHHHhhCCCChhHHHHHHhhCC----ccccccccCCchhhHHHHHHHhcCCChHHHHHHHH
Q 023626 69 SQILSTIDFFKSKGLTNGHFSRLAYLCP----QFFSINFDPSEIEPVFDFLITDLHASVEERRGLII 131 (279)
Q Consensus 69 ~~l~~~i~~L~~~G~s~~~i~~li~~~P----~lL~~~~e~~~l~~~v~fL~~~lGls~~~i~~ll~ 131 (279)
=++.++-.+|+.+|+++.-+... .++- -++..+ + +.|.+++|++.-++.+++.
T Consensus 18 lSv~EVs~~Lr~igL~e~vv~~F-~~e~IDG~lL~~L~---e------e~L~edf~ls~Lq~kKi~~ 74 (84)
T 2dkz_A 18 LSIEEVSKSLRFIGLSEDVISFF-VTEKIDGNLLVQLT---E------EILSEDFKLSKLQVKKIMQ 74 (84)
T ss_dssp CCHHHHHHHGGGTCCCHHHHHHH-HTTTCCHHHHHHCC---H------HHHHHTSCCCHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCcHHHHHHH-HHHccchHHHHhCC---H------HHHHhhcCCCHHHHHHHHH
Confidence 45667777778788875444433 2222 122222 1 5676678888877777654
No 71
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.42 E-value=76 Score=20.23 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHccCChHH
Q 023626 177 RLRETLRFLRSIGLNRRE 194 (279)
Q Consensus 177 ~l~~~v~~L~~~G~s~~~ 194 (279)
.-..+++-|.+|||...+
T Consensus 8 ~~a~~L~~L~eMGF~D~~ 25 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQ 25 (54)
T ss_dssp THHHHHHHHHHHTCCCHH
T ss_pred hhHHHHHHHHHcCCCcHH
Confidence 345567778888885544
No 72
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Probab=21.36 E-value=1.4e+02 Score=29.70 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=13.3
Q ss_pred HHHHHHHHH-HccCChHHHHHHHh
Q 023626 178 LRETLRFLR-SIGLNRREAAEFCA 200 (279)
Q Consensus 178 l~~~v~~L~-~~G~s~~~v~~~l~ 200 (279)
+.+-.-.|. +.||+.++|.+|-.
T Consensus 411 V~~L~p~l~~~~glt~~qvv~IAs 434 (1047)
T 3ugm_A 411 VQRLLPVLCQAHGLTPDQVVAIAS 434 (1047)
T ss_dssp HHHHHHHHHTTSSCCHHHHHHHHS
T ss_pred HhhccchhhhhcCCCHHHhhhhhc
Confidence 334444445 66777777766644
No 73
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=20.54 E-value=2.2e+02 Score=23.87 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccCChHHHHHH----HhcCCcccccChhhhHHHHHHHHHH-HhCCChHHHhh--------CCceeecccC
Q 023626 178 LRETLRFLRSIGLNRREAAEF----CARMPAIFGYNIEHHLKIKFEFLAV-EMERSLEELKE--------FPQYFGFSLG 244 (279)
Q Consensus 178 l~~~v~~L~~~G~s~~~v~~~----l~~~P~iL~~s~e~~i~~k~~fL~~-~mg~~~~~i~~--------~P~~L~~sl~ 244 (279)
..+-+.+|.++|++...-..+ +..+|. . +.++.-++.+.. .||.+.+++.. +|.+..-++.
T Consensus 16 ~~eIv~~L~~~~i~~~~~~n~t~~DL~~~Pt-----p-~~v~~iy~~~l~~~~g~~~e~~~~~~~~~~~~~pel~~~si~ 89 (250)
T 2ve7_C 16 VAEIVIHIRNKILTGADGKNLTKNDLYPNPK-----P-EVLHMIYMRALQIVYGIRLEHFYMMPVNSGVMYPHLMEGFLP 89 (250)
T ss_dssp HHHHHHHHHHHTCCHHHHHTCCGGGTSSSCC-----H-HHHHHHHHHHHHHHHCCCSGGGSCCCSSCCCSCGGGGTTTHH
T ss_pred HHHHHHHHHHcCCCCccccCCCHHHHhcCCC-----H-HHHHHHHHHHHHHHcCCCHHHHhccchhhcccChhhHHHHHH
Confidence 456666777777753211000 012343 3 455666655554 56777666532 2222222221
Q ss_pred Cch--HHHHHHHHHCCC-CCChhhhhccchhHHHH
Q 023626 245 KRI--APRHWHLKQRNV-RIKLNKMLLWSDNRFYT 276 (279)
Q Consensus 245 ~ri--~pR~~~L~~~G~-~~~l~~~l~~s~~~F~~ 276 (279)
... +.-.++++..|+ +.++.+++..+-+++..
T Consensus 90 ~l~~~r~l~~~l~~~gv~DFtl~DL~kP~~~Rt~~ 124 (250)
T 2ve7_C 90 FSNLVTHLDSFLPICRVNDFETADILCPKAKRTSR 124 (250)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCcHhHhcCCchHHHHH
Confidence 010 111234677888 68888888888777643
Done!