BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023627
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DAG|H Chain H, Structure Of The Human Metapneumovirus Fusion Protein With
Neutralizing Antibody Identifies A Pneumovirus Antigenic
Site
Length = 220
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 66 HRSLDDVRMNLEVLKYCATVLFLESGLPDIFTVNRWEMCSAASVSEGSS 114
H ++ +R+ + YCA VL SG+PD F + W + +VS S+
Sbjct: 79 HLQMNSLRVEDTAIYYCARVLSRASGMPDAFDI--WGPGTMVTVSSAST 125
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 216 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 259
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 332 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 375
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 332 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 375
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 52 LASLATYFGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDI 95
L LAT LG+ + + L +R +L++L +L E GLPD+
Sbjct: 332 LERLATRLELGRASPKDLGALRRSLQILPELRALLGEEVGLPDL 375
>pdb|2QGM|A Chain A, Crystal Structure Of Succinoglycan Biosynthesis Protein At
The Resolution 1.7 A. Northeast Structural Genomics
Consortium Target Bcr136
Length = 445
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 40 KTLEELQPYSTLLASLATYFGLGQQTHRSLDDVRMNLEVLKYCAT 84
K E+L+P + + A Y GLG+ TH S + ++KY T
Sbjct: 59 KPFEDLKPLKKXIGN-AQYVGLGENTHGSSEIFTXKFRLVKYLVT 102
>pdb|2P3H|A Chain A, Crystal Structure Of The Corc_hlyc Domain Of A Putative
Corynebacterium Glutamicum Hemolysin
Length = 101
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 221 PSGDIQKLEFVRFDAAELDSLLKPGTFVDAFLSLDPYDYVYEQSAGIRLV 270
P GD + + + FD A ++LLK G ++ L +P DY+ S R++
Sbjct: 34 PEGDYETISGLLFDHA--NALLKTGDVIEIPLDFEPEDYLNNTSPTQRIL 81
>pdb|3B49|A Chain A, Crystal Structure Of An Uncharacterized Conserved Protein
From Listeria Innocua
Length = 211
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 199 LRIPTVVFGDVAQYATEMYRKE-PSGDIQKLEFVRFDAAELDSLLKPGTFVDAFLSLDPY 257
LR P V +V ++A E+ RK+ P D +++ VRF+ E G F + ++
Sbjct: 108 LRQPDFVTEEVLEWAKEVARKKKPDVDTSRVKLVRFEEGECVQXXHVGPFSEEVHTV-AE 166
Query: 258 DYVYEQSAGIRLVAKKLIIHSE 279
+ + ++ G+R + H E
Sbjct: 167 XHQFXETEGLRNDTGAIRKHHE 188
>pdb|1JCU|A Chain A, Solution Structure Of Mth1692 Protein From
Methanobacterium Thermoautotrophicum
Length = 208
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 87 FLESGLPDIFTV--NRWEMCSAASVSEGSSGYARFMEPDELYCSRLKIRYGISTRFVDQA 144
+E LP +TV R E+ V G S PD+ C R+ R+ ++ + +
Sbjct: 87 LMERILPGPYTVVLERNELI--PDVITGGSSRVGIRVPDDEICRRIAARFPVTATSANIS 144
Query: 145 GR---PRLSFVVDASQSLCTVLDA 165
G+ PRL +V ++ VLDA
Sbjct: 145 GKPPSPRLEEIVRDLDAVDLVLDA 168
>pdb|2XSJ|B Chain B, Structure Of Desulforubidin From Desulfomicrobium
Norvegicum
pdb|2XSJ|E Chain E, Structure Of Desulforubidin From Desulfomicrobium
Norvegicum
Length = 386
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 7/108 (6%)
Query: 164 DACEVVAKKLFEDSRSNSEWNPVVTRQSGNDPAARLRIPTVVFGDVAQYATEMYRKEPSG 223
D ++A + SN +++ VV N+P R+ +V+ V YA + + E G
Sbjct: 284 DGLVIMAGGKVSNRISNPKFSKVVVAFIPNEPPRWPRLASVIRQIVEAYAADARKYERVG 343
Query: 224 D-IQKLEFVR-FDAAELDSLLKPGTFVDAFLSLDPYDYVYEQSAGIRL 269
D +++ + R F+ ELD + +D F DP Y + Q+ +
Sbjct: 344 DWAERIGWERFFEKCELDFSIH---MIDDF--RDPAYYTWRQTTNFKF 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,097,504
Number of Sequences: 62578
Number of extensions: 311101
Number of successful extensions: 631
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 19
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)