BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023627
         (279 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6B8Z8|SYFB_GRATL Phenylalanine--tRNA ligase beta subunit, chloroplastic
           OS=Gracilaria tenuistipitata var. liui GN=pheT PE=3 SV=1
          Length = 697

 Score = 33.1 bits (74), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 13/92 (14%)

Query: 59  FGLGQQTHRSLDDVRMNLEVLKYCATVLFLESGLPDIFTVNRWEMCSAASVSEGSSGYAR 118
           F L +++H   D   + LEVL+Y   +LF     P  F++N    C AA+ S    GY  
Sbjct: 168 FNLQKKSHIIYDSPNIELEVLRYDDVILF-----PIGFSLNENIKCDAATNSIVIMGYV- 221

Query: 119 FMEPDELYCSRLKIRYGIST----RFVDQAGR 146
               D+ Y + +K +  +ST    R  +Q  R
Sbjct: 222 ---CDKQYITDIKKKLKLSTYLSQRCCNQGSR 250


>sp|B2UZ27|GATB_CLOBA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           OS=Clostridium botulinum (strain Alaska E43 / Type E3)
           GN=gatB PE=3 SV=1
          Length = 476

 Score = 32.0 bits (71), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 31/119 (26%)

Query: 134 YGISTRFVDQAGRPRL-SFVVDASQSLCTVLDACEVVAKKLFEDSRSNSEWNPVVTRQSG 192
           Y  + RFV + G P+  + V+  + S+    D C     KL  D ++ S W         
Sbjct: 298 YQKADRFVKEYGLPKYDAHVLTLTDSMADYFDEC----AKLSGDPKAASNW--------- 344

Query: 193 NDPAARLRIPTVVFGDVAQYATEMYRKEPSGDIQKLEFVRFDAAELDSLLKPGTFVDAF 251
                       + GD+++       KE S  I+ L+F   D AEL  ++K GT   A 
Sbjct: 345 ------------IMGDISRLM-----KEESTWIEDLKFSPKDLAELIEVIKEGTISSAI 386


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.137    0.403 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,273,657
Number of Sequences: 539616
Number of extensions: 3909422
Number of successful extensions: 8008
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8007
Number of HSP's gapped (non-prelim): 3
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)