Query 023627
Match_columns 279
No_of_seqs 85 out of 87
Neff 3.0
Searched_HMMs 29240
Date Mon Mar 25 10:03:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023627.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023627hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1j_A POLIII, DNA polymerase 99.3 1E-12 3.4E-17 108.7 5.7 72 6-81 10-171 (186)
2 2xri_A ERI1 exoribonuclease 3; 99.2 1E-11 3.4E-16 105.9 6.0 33 8-40 31-63 (224)
3 2gui_A DNA polymerase III epsi 99.2 2.2E-11 7.4E-16 100.4 6.1 36 8-43 9-47 (194)
4 2gbz_A Oligoribonuclease; ORN, 99.2 4.1E-11 1.4E-15 100.1 6.7 33 6-40 7-39 (194)
5 1w0h_A 3'-5' exonuclease ERI1; 99.1 3.5E-11 1.2E-15 99.3 5.9 35 52-91 159-195 (204)
6 3tr8_A Oligoribonuclease; tran 99.1 6.4E-11 2.2E-15 100.9 7.1 35 3-39 4-38 (186)
7 2f96_A Ribonuclease T; RNAse, 99.1 6.2E-11 2.1E-15 100.3 6.8 30 52-81 176-208 (224)
8 3mxm_B Three prime repair exon 99.1 4E-11 1.4E-15 104.4 4.8 32 7-40 11-42 (242)
9 2igi_A Oligoribonuclease; RNAs 99.1 1E-10 3.5E-15 95.3 6.7 33 6-40 3-35 (180)
10 1y97_A Three prime repair exon 99.1 9.3E-11 3.2E-15 99.4 5.6 35 4-40 6-40 (238)
11 3v9w_A Ribonuclease T; DEDD nu 99.1 1.8E-10 6.1E-15 98.0 6.7 35 52-91 184-221 (235)
12 3cg7_A CRN-4, cell death-relat 99.0 3.1E-10 1E-14 102.5 6.8 44 8-51 19-65 (308)
13 1zbh_A 3'-5' exonuclease ERI1; 99.0 4.5E-10 1.5E-14 100.3 6.6 36 52-92 227-264 (299)
14 3u3y_B Three prime repair exon 98.9 4.6E-10 1.6E-14 103.5 5.1 33 7-41 11-43 (314)
15 1wlj_A Interferon stimulated g 98.9 1.5E-09 5.1E-14 90.2 6.7 30 52-81 130-164 (189)
16 1zbu_A ERI-1 homolog, 3'-5' ex 98.9 1.4E-09 4.8E-14 100.5 5.5 36 52-92 277-314 (349)
17 2qxf_A Exodeoxyribonuclease I; 98.8 4.1E-09 1.4E-13 101.6 6.9 36 5-42 6-42 (482)
18 1yd6_A UVRC; DNA binding prote 98.5 8E-09 2.7E-13 81.6 -2.0 50 107-158 10-62 (99)
19 1yd0_A Uvrabc system protein C 98.3 3E-08 1E-12 78.0 -2.3 61 107-171 10-82 (96)
20 2wsh_A Endonuclease II; GIY-YI 96.5 0.00013 4.3E-09 61.9 -3.1 41 114-155 41-90 (143)
21 4hec_A Putative uncharacterize 95.5 0.022 7.4E-07 49.5 6.1 30 10-42 24-53 (190)
22 2kfn_A Klenow fragment of DNA 88.8 0.92 3.1E-05 44.3 7.4 26 8-35 26-51 (605)
23 1x9m_A DNA polymerase; DNA plo 74.1 4 0.00014 40.6 5.6 46 10-60 1-51 (698)
24 4gmj_B CCR4-NOT transcription 39.9 21 0.00073 32.4 3.6 36 52-87 209-246 (285)
25 1qht_A Protein (DNA polymerase 34.9 32 0.0011 34.7 4.3 26 7-34 134-162 (775)
26 2p51_A SPCC18.06C protein; DED 32.0 33 0.0011 32.3 3.6 36 52-87 220-257 (333)
27 2fqm_A Phosphoprotein, P prote 30.3 19 0.00063 27.7 1.3 31 178-208 1-31 (75)
28 2d5r_A CCR4-NOT transcription 29.9 30 0.001 31.0 2.8 34 52-85 199-234 (252)
No 1
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=99.33 E-value=1e-12 Score=108.73 Aligned_cols=72 Identities=32% Similarity=0.461 Sum_probs=59.3
Q ss_pred CCceEEEEEeecCCCCCCCCceeEEEEeeEEEecCceeeccchHHH----------------------------------
Q 023627 6 DRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPKTLEELQPYSTL---------------------------------- 51 (279)
Q Consensus 6 ~~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~~l~e~~sf~TL---------------------------------- 51 (279)
.+..+|+||+||||.++.. .+|+|||||++..|+++ ++|++|
T Consensus 10 ~~~~~v~iD~ETTGl~~~~--~~IieIg~v~~~~g~i~--~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~ 85 (186)
T 2p1j_A 10 GDATFVVLDFETTGLDPQV--DEIIEIGAVKIQGGQIV--DEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPE 85 (186)
T ss_dssp ---CEEEEEEEESCSCTTT--CCEEEEEEEEEETTEEE--EEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHH
T ss_pred cCCCEEEEEEECCCCCCCC--CeEEEEEEEEEECCEEE--EEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHH
Confidence 4568999999999998765 68999999999988764 333322
Q ss_pred -------------------------------------------------------HHHHHHhhCCC-CCccccchhhhcc
Q 023627 52 -------------------------------------------------------LASLATYFGLG-QQTHRSLDDVRMN 75 (279)
Q Consensus 52 -------------------------------------------------------LatLA~~Fg~~-~~~HRALdDar~t 75 (279)
|.+|+.+||+. .+.||||+||++|
T Consensus 86 ~~~~l~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~~~~~~~L~~l~~~~gi~~~~~H~Al~Da~~t 165 (186)
T 2p1j_A 86 FLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLRSYSLDSVVEKLGLGPFRHHRALDDARVT 165 (186)
T ss_dssp HHHHSSSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHTCCSCCSHHHHHHHTTCCSTTCCHHHHHHHHH
T ss_pred HHHHHCCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHhhcCCCCHHHHHHHcCCCCCCCcCHHHHHHHH
Confidence 67799999998 7899999999999
Q ss_pred HHHHHh
Q 023627 76 LEVLKY 81 (279)
Q Consensus 76 ~dVl~~ 81 (279)
++++..
T Consensus 166 ~~l~~~ 171 (186)
T 2p1j_A 166 AQVFLR 171 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999998
No 2
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=99.22 E-value=1e-11 Score=105.94 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=28.1
Q ss_pred ceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 023627 8 FEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (279)
Q Consensus 8 ~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~ 40 (279)
..+|+||+||||+++...+.+|||||||++.++
T Consensus 31 ~~~vviD~ETTGl~~~~d~~~IieIgav~v~~~ 63 (224)
T 2xri_A 31 HYFLVLDFEATCDKPQIHPQEIIEFPILKLNGR 63 (224)
T ss_dssp SEEEEECCEECCCC-CCSSCCEEEEEEEEEETT
T ss_pred CeEEEEEEEcCCCCCCCCCcceEEEEEEEEecC
Confidence 579999999999998764469999999999987
No 3
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=99.18 E-value=2.2e-11 Score=100.35 Aligned_cols=36 Identities=28% Similarity=0.243 Sum_probs=29.5
Q ss_pred ceEEEEEeecCCCCCC---CCceeEEEEeeEEEecCcee
Q 023627 8 FEIAFFDVETAFPNPP---GQRIAILEFGAILVCPKTLE 43 (279)
Q Consensus 8 ~e~vffDvETT~p~~~---~~~~~ilEfgAI~Vcp~~l~ 43 (279)
..+|+||+||||+++. +.+.+|||||||++..|.++
T Consensus 9 ~~~vviD~ETTGl~~~~~~~~~~~Iieig~v~~~~~~~~ 47 (194)
T 2gui_A 9 TRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT 47 (194)
T ss_dssp CEEEEEEEEESCCCSSSSTTTTCCEEEEEEEEEETTEEC
T ss_pred CCEEEEEeeCCCCCCcccCCCCCEEEEEEEEEEECCeEe
Confidence 4689999999999872 12389999999999887663
No 4
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=99.16 E-value=4.1e-11 Score=100.12 Aligned_cols=33 Identities=15% Similarity=0.207 Sum_probs=27.5
Q ss_pred CCceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 023627 6 DRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (279)
Q Consensus 6 ~~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~ 40 (279)
.+..+|+||+||||+++.. .+|||||||+.-++
T Consensus 7 ~~~~~vviD~ETTGl~p~~--d~IieIgav~~~~~ 39 (194)
T 2gbz_A 7 GNDRLIWIDLEMTGLDTDR--DSIIEIATIVTDAQ 39 (194)
T ss_dssp -CCEEEEEEEEESCSCTTT--CCEEEEEEEEEETT
T ss_pred CCCCEEEEEeECCCCCCCC--CccEEEEEEEEcCC
Confidence 4568999999999999865 89999999985544
No 5
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=99.15 E-value=3.5e-11 Score=99.32 Aligned_cols=35 Identities=23% Similarity=0.406 Sum_probs=30.2
Q ss_pred HHHHHHhhCCC-C-CccccchhhhccHHHHHhhhHHHHhhhc
Q 023627 52 LASLATYFGLG-Q-QTHRSLDDVRMNLEVLKYCATVLFLESG 91 (279)
Q Consensus 52 LatLA~~Fg~~-~-~~HRALdDar~t~dVl~~catvlllE~~ 91 (279)
|.+|+.+||+. . ..||||+||++|++||.. ++++.
T Consensus 159 L~~l~~~~gi~~~~~~H~Al~Da~~ta~l~~~-----l~~~~ 195 (204)
T 1w0h_A 159 LTIMLEKLGMDYDGRPHCGLDDSKNIARIAVR-----MLQDG 195 (204)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHH-----HHHTT
T ss_pred HHHHHHHcCCCCCCCccCcHHHHHHHHHHHHH-----HHHCC
Confidence 77789999998 4 479999999999999999 67654
No 6
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=99.14 E-value=6.4e-11 Score=100.93 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=29.7
Q ss_pred CCCCCceEEEEEeecCCCCCCCCceeEEEEeeEEEec
Q 023627 3 PRQDRFEIAFFDVETAFPNPPGQRIAILEFGAILVCP 39 (279)
Q Consensus 3 ~~~~~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp 39 (279)
|...+..+|+||+||||++|.+ .+|||||||++.+
T Consensus 4 ~~~~~~~~v~~D~ETTGL~p~~--d~IiEIgaV~~d~ 38 (186)
T 3tr8_A 4 MDFSDDNLIWLDLEMTGLDPER--DRIIEIATIVTNS 38 (186)
T ss_dssp CCCCTTCEEEEEEEESSSCTTT--CCEEEEEEEEECT
T ss_pred CcCCCCcEEEEEEECCCCCCCC--CceEEEEEEEEcC
Confidence 4557789999999999999975 9999999995544
No 7
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=99.13 E-value=6.2e-11 Score=100.34 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHHHHHhhCCC---CCccccchhhhccHHHHHh
Q 023627 52 LASLATYFGLG---QQTHRSLDDVRMNLEVLKY 81 (279)
Q Consensus 52 LatLA~~Fg~~---~~~HRALdDar~t~dVl~~ 81 (279)
|.+|+.+||+. .+.||||+||++|++||..
T Consensus 176 L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~ 208 (224)
T 2f96_A 176 LAKACQAAGMEFDNREAHSARYDTEKTAELFCG 208 (224)
T ss_dssp HHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHH
Confidence 67888999997 3799999999999999999
No 8
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=99.11 E-value=4e-11 Score=104.39 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=28.5
Q ss_pred CceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 023627 7 RFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (279)
Q Consensus 7 ~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~ 40 (279)
-.+||+||+||||+++.. .+|||||||+|..+
T Consensus 11 ~~~~vv~D~ETTGl~~~~--d~IiEIgav~v~~~ 42 (242)
T 3mxm_B 11 MQTLIFLDLEATGLPSSR--PEVTELCLLAVHRR 42 (242)
T ss_dssp CSEEEEEEEEESSCGGGC--CCEEEEEEEEEEHH
T ss_pred cceEEEEEeecCCCCCCC--CeeEEEEEEEecCC
Confidence 467999999999998865 89999999999876
No 9
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=99.10 E-value=1e-10 Score=95.30 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=28.2
Q ss_pred CCceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 023627 6 DRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (279)
Q Consensus 6 ~~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~ 40 (279)
.+..+|+||+||||+++.. .+|||+|||++.++
T Consensus 3 ~~~~~v~iD~ETTGl~~~~--~~IieIg~v~~~~~ 35 (180)
T 2igi_A 3 NENNLIWIDLEMTGLDPER--DRIIEIATLVTDAN 35 (180)
T ss_dssp GGGCEEEEEEEESSSCTTT--CCEEEEEEEEECTT
T ss_pred CCCcEEEEEeeCCCCCCCC--CceEEEEEEEEcCC
Confidence 3567999999999998865 78999999988754
No 10
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=99.08 E-value=9.3e-11 Score=99.39 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=29.2
Q ss_pred CCCCceEEEEEeecCCCCCCCCceeEEEEeeEEEecC
Q 023627 4 RQDRFEIAFFDVETAFPNPPGQRIAILEFGAILVCPK 40 (279)
Q Consensus 4 ~~~~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~ 40 (279)
......+|+||+||||+++.. .+|||||||++.++
T Consensus 6 ~~~~~~~v~iD~ETTGl~~~~--~~IieIg~v~~~~~ 40 (238)
T 1y97_A 6 APRAETFVFLDLEATGLPSVE--PEIAELSLFAVHRS 40 (238)
T ss_dssp SCCCSEEEEEEEEESSCGGGC--CCEEEEEEEEEEHH
T ss_pred CCccCeEEEEEeeCCCcCCCC--CcEEEEEEEEeccc
Confidence 344568999999999998654 79999999999865
No 11
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=99.06 E-value=1.8e-10 Score=97.96 Aligned_cols=35 Identities=17% Similarity=0.199 Sum_probs=30.3
Q ss_pred HHHHHHhhCCC-C--CccccchhhhccHHHHHhhhHHHHhhhc
Q 023627 52 LASLATYFGLG-Q--QTHRSLDDVRMNLEVLKYCATVLFLESG 91 (279)
Q Consensus 52 LatLA~~Fg~~-~--~~HRALdDar~t~dVl~~catvlllE~~ 91 (279)
|.+|+.+||+. . +.||||+||++|++++.. ++++.
T Consensus 184 L~~l~~~~gi~~~~~~~H~Al~DA~~ta~l~~~-----l~~~l 221 (235)
T 3v9w_A 184 LSKACQTAGMDFDSTQAHSALYDTERTAVLFCE-----IVNRW 221 (235)
T ss_dssp HHHHHHHHTCCCCTTTTTCHHHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHcCCCCCCCCCcChHHHHHHHHHHHHH-----HHHHH
Confidence 77899999998 2 699999999999999999 55554
No 12
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=99.02 E-value=3.1e-10 Score=102.54 Aligned_cols=44 Identities=11% Similarity=0.184 Sum_probs=32.0
Q ss_pred ceEEEEEeecCCCCCCCC-ceeEEEEeeEEE--ecCceeeccchHHH
Q 023627 8 FEIAFFDVETAFPNPPGQ-RIAILEFGAILV--CPKTLEELQPYSTL 51 (279)
Q Consensus 8 ~e~vffDvETT~p~~~~~-~~~ilEfgAI~V--cp~~l~e~~sf~TL 51 (279)
..+|+||+||||.++... ..+|||||||+| ..|++++.++|++|
T Consensus 19 ~~~vviD~ETTGl~~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~l 65 (308)
T 3cg7_A 19 DTLLILDFETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKY 65 (308)
T ss_dssp SEEEEEEEEECCBTTBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CeEEEEEeecCCCCCCCCCCCCeEEEEEEEEEcCCCEEeeccceeeE
Confidence 579999999999987641 248999999999 45666432244444
No 13
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=98.99 E-value=4.5e-10 Score=100.34 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=30.4
Q ss_pred HHHHHHhhCCC-C-CccccchhhhccHHHHHhhhHHHHhhhcc
Q 023627 52 LASLATYFGLG-Q-QTHRSLDDVRMNLEVLKYCATVLFLESGL 92 (279)
Q Consensus 52 LatLA~~Fg~~-~-~~HRALdDar~t~dVl~~catvlllE~~~ 92 (279)
|.+|+.+||+. . ..||||+||++|++||.. ++++..
T Consensus 227 L~~l~~~~gi~~~g~~H~Al~DA~ata~l~~~-----l~~~~~ 264 (299)
T 1zbh_A 227 LTIMLEKLGMDYDGRPNCGLDDSKNIARIAVR-----MLQDGC 264 (299)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHH-----HHHTTC
T ss_pred HHHHHHHcCCCCCCCCCChHHHHHHHHHHHHH-----HHHhCC
Confidence 66788899998 4 479999999999999999 777653
No 14
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.95 E-value=4.6e-10 Score=103.55 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=29.0
Q ss_pred CceEEEEEeecCCCCCCCCceeEEEEeeEEEecCc
Q 023627 7 RFEIAFFDVETAFPNPPGQRIAILEFGAILVCPKT 41 (279)
Q Consensus 7 ~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~~ 41 (279)
-.+|||||+||||.++.. .+|||||||+|..+.
T Consensus 11 ~~tfVv~DlETTGL~~~~--d~IIEIgaV~v~~~~ 43 (314)
T 3u3y_B 11 MQTLIFLDLEATGLPSSR--PEVTELCLLAVHRRA 43 (314)
T ss_dssp CSEEEEEEEEESSCGGGC--CCEEEEEEEEEEHHH
T ss_pred cCCEEEEEEECCCCCCCC--CeEEEEEEEEEECCc
Confidence 467999999999999865 899999999998763
No 15
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=98.92 E-value=1.5e-09 Score=90.15 Aligned_cols=30 Identities=27% Similarity=0.419 Sum_probs=26.7
Q ss_pred HHHHHHh-hCCC-CC---ccccchhhhccHHHHHh
Q 023627 52 LASLATY-FGLG-QQ---THRSLDDVRMNLEVLKY 81 (279)
Q Consensus 52 LatLA~~-Fg~~-~~---~HRALdDar~t~dVl~~ 81 (279)
|.+|+.+ ||+. .. .||||+||++|+++|..
T Consensus 130 L~~l~~~~lgi~~~~~~~~H~Al~Da~ata~l~~~ 164 (189)
T 1wlj_A 130 LRVLSERLLHKSIQNSLLGHSSVEDARATMELYQI 164 (189)
T ss_dssp HHHHHHHHTCCCCSCCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCcCcHHHHHHHHHHHHH
Confidence 6778887 7998 44 89999999999999998
No 16
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=98.87 E-value=1.4e-09 Score=100.52 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=30.3
Q ss_pred HHHHHHhhCCC-C-CccccchhhhccHHHHHhhhHHHHhhhcc
Q 023627 52 LASLATYFGLG-Q-QTHRSLDDVRMNLEVLKYCATVLFLESGL 92 (279)
Q Consensus 52 LatLA~~Fg~~-~-~~HRALdDar~t~dVl~~catvlllE~~~ 92 (279)
|.+|+.+||+. . ..||||+||++|++||.. ++++..
T Consensus 277 L~~l~~~~gi~~~g~~HrAl~DA~ata~ll~~-----ll~~~~ 314 (349)
T 1zbu_A 277 LTIMLEKLGMDYDGRPHCGLDDSKNIARIAVR-----MLQDGC 314 (349)
T ss_dssp HHHHHHHTTCCCCSCTTCHHHHHHHHHHHHHH-----HHHTTC
T ss_pred HHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHH-----HHHhcc
Confidence 66788899998 4 479999999999999999 776653
No 17
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=98.82 E-value=4.1e-09 Score=101.64 Aligned_cols=36 Identities=22% Similarity=0.143 Sum_probs=30.1
Q ss_pred CCCceEEEEEeecCCCCCCCCceeEEEEeeEEEe-cCce
Q 023627 5 QDRFEIAFFDVETAFPNPPGQRIAILEFGAILVC-PKTL 42 (279)
Q Consensus 5 ~~~~e~vffDvETT~p~~~~~~~~ilEfgAI~Vc-p~~l 42 (279)
..+..||+||+||||.++.. .+|||||||++. .|.+
T Consensus 6 ~~~~~~vv~DlETTGl~p~~--d~IIEIgaV~vd~~g~i 42 (482)
T 2qxf_A 6 KQQSTFLFHDYETFGTHPAL--DRPAQFAAIRTDSEFNV 42 (482)
T ss_dssp -CCCEEEEEEEEESSSCTTT--SCEEEEEEEEECTTSCB
T ss_pred CCCCCEEEEEEECCCCCCCC--CeEEEEEEEEEECCCeE
Confidence 45678999999999999876 799999999998 4444
No 18
>1yd6_A UVRC; DNA binding protein; 2.00A {Bacillus caldotenax}
Probab=98.47 E-value=8e-09 Score=81.57 Aligned_cols=50 Identities=10% Similarity=0.176 Sum_probs=43.0
Q ss_pred cCCCCCCCCeeeecCCCc--cc-ccCcceeeeccccccCCCCCccceeeeccccc
Q 023627 107 ASVSEGSSGYARFMEPDE--LY-CSRLKIRYGISTRFVDQAGRPRLSFVVDASQS 158 (279)
Q Consensus 107 ~~lp~~~pGvy~F~~p~d--Ly-gt~~~vR~rVrsyFt~se~RpR~~~mVdla~~ 158 (279)
..+| ..||||.|.+.++ || |.+.|||.||++||+++ .++|+..||.-..+
T Consensus 10 ~~lP-~~pGVY~~~d~~g~vlYVGKAknLr~Rv~syf~~~-~~~k~~~m~~~~~~ 62 (99)
T 1yd6_A 10 AVLP-EQPGCYLMKDKHGTVIYVGKAKSLKERVRSYFTGT-HDGKTQRLVEEIAD 62 (99)
T ss_dssp HTCC-SSCEEEEEECSSCCEEEEEEESCHHHHHHGGGSSC-CCHHHHHHHHHCSE
T ss_pred HhCC-CCCeEEEEEcCCCCEEEEecCcCHHHHHHHHcccC-CChHHHHHHHheeE
Confidence 4578 8999999999888 99 99999999999999998 78888877654433
No 19
>1yd0_A Uvrabc system protein C; DNA binding protein; 1.50A {Thermotoga maritima} PDB: 1ycz_A 1yd1_A 1yd4_A 1yd3_A 1yd2_A 1yd5_A
Probab=98.31 E-value=3e-08 Score=78.03 Aligned_cols=61 Identities=8% Similarity=0.128 Sum_probs=46.9
Q ss_pred cCCCCCCCCeeeecCCCc--cc-ccCcceeeeccccccCCCCCccceeeecccc---------chHHHHHHHHHHHH
Q 023627 107 ASVSEGSSGYARFMEPDE--LY-CSRLKIRYGISTRFVDQAGRPRLSFVVDASQ---------SLCTVLDACEVVAK 171 (279)
Q Consensus 107 ~~lp~~~pGvy~F~~p~d--Ly-gt~~~vR~rVrsyFt~se~RpR~~~mVdla~---------~v~~Vl~~Cd~~aq 171 (279)
..+| ..||||.|.+ ++ || |.+.|||.||++||+++ .+|...|+.-.. .+++.|-.|.-|-+
T Consensus 10 ~~lP-~~pGVY~~~d-~g~vlYVGKAknLr~Rv~syf~~~--~~k~~~~~~~~~~i~~~~t~sE~eAlllE~~lIk~ 82 (96)
T 1yd0_A 10 LLAP-EEPGVYIFKN-KGVPIYIGKAKRLSNRLRSYLNPQ--TEKVFRIGEEADELETIVVMNEREAFILEANLIKK 82 (96)
T ss_dssp HHCC-SSCEEEEEEE-TTEEEEEEEESSHHHHHHGGGSCS--SHHHHHHHHHCSEEEEEECSSHHHHHHHHHHHHHH
T ss_pred HhCC-CCCeEEEEEC-CCeEEEEecCcCHHHHHHHHccCC--CHHHHHHHHhccEEEEEEECCHHHHHHHHHHHHHH
Confidence 4578 8999999999 77 99 99999999999999987 788877765443 34555555554443
No 20
>2wsh_A Endonuclease II; GIY-YIG, hydrolase; 1.90A {Enterobacteria phage T4}
Probab=96.52 E-value=0.00013 Score=61.85 Aligned_cols=41 Identities=10% Similarity=0.087 Sum_probs=31.9
Q ss_pred CCeeeecCCCc--cc-ccCcceeeeccccccCCC------CCccceeeecc
Q 023627 114 SGYARFMEPDE--LY-CSRLKIRYGISTRFVDQA------GRPRLSFVVDA 155 (279)
Q Consensus 114 pGvy~F~~p~d--Ly-gt~~~vR~rVrsyFt~se------~RpR~~~mVdl 155 (279)
||||.|.+ ++ || |.+.+||.||++||+.+. ..||...||..
T Consensus 41 ~GVY~~~~-~g~ViYVGKAknLkkRv~sYf~~~~~~~~~~~~~Kt~~mv~~ 90 (143)
T 2wsh_A 41 NVIYAIAI-NDELVYIGKTKNLRKRINYYRTAINRKDKTSDSTKSALIHSA 90 (143)
T ss_dssp SEEEEEEE-TTEEEEEEEESCHHHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred ceEEEEEc-CCeEEEEEecccHhHHHHHhcCCCCcccccCCCHHHHHHHHH
Confidence 44999997 55 99 999999999999998652 46666656543
No 21
>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}
Probab=95.51 E-value=0.022 Score=49.46 Aligned_cols=30 Identities=17% Similarity=0.231 Sum_probs=22.1
Q ss_pred EEEEEeecCCCCCCCCceeEEEEeeEEEecCce
Q 023627 10 IAFFDVETAFPNPPGQRIAILEFGAILVCPKTL 42 (279)
Q Consensus 10 ~vffDvETT~p~~~~~~~~ilEfgAI~Vcp~~l 42 (279)
-+|+|.|+|+- .. ...||.+|+|--.++-.
T Consensus 24 r~FlDTEFt~d-~~--~~eLISIGlV~EdGrEF 53 (190)
T 4hec_A 24 RYFYDTEFIED-GH--TIELISIGVVAEDGREY 53 (190)
T ss_dssp EEEEEEEEEEC-SS--CEEEEEEEEEETTSCEE
T ss_pred EEEEeeeecCC-CC--CCCEEEEEEEcCCCCEE
Confidence 58999999982 22 37899999986554433
No 22
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=88.84 E-value=0.92 Score=44.29 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=21.3
Q ss_pred ceEEEEEeecCCCCCCCCceeEEEEeeE
Q 023627 8 FEIAFFDVETAFPNPPGQRIAILEFGAI 35 (279)
Q Consensus 8 ~e~vffDvETT~p~~~~~~~~ilEfgAI 35 (279)
.++++||+|||+.++.. ..|+++|+.
T Consensus 26 ~~~va~DtEttgl~~~~--~~iv~I~~~ 51 (605)
T 2kfn_A 26 APVFAFDTETDSLDNIS--ANLVGLSFA 51 (605)
T ss_dssp SSSEEEEEEESCSCTTT--CCEEEEEEE
T ss_pred CCeEEEEEecCCCCccc--CceEEEEEE
Confidence 36799999999998754 579998866
No 23
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=74.08 E-value=4 Score=40.62 Aligned_cols=46 Identities=9% Similarity=0.101 Sum_probs=26.8
Q ss_pred EEEEEeecCCCCCCCCceeEEEEeeEEEec---Cceeecc--chHHHHHHHHHhhC
Q 023627 10 IAFFDVETAFPNPPGQRIAILEFGAILVCP---KTLEELQ--PYSTLLASLATYFG 60 (279)
Q Consensus 10 ~vffDvETT~p~~~~~~~~ilEfgAI~Vcp---~~l~e~~--sf~TLLatLA~~Fg 60 (279)
||+||+||||.++...+ | +.|.+.. +...-++ .....+..|..+|.
T Consensus 1 ~vv~D~ETtGl~~~~d~--i---~~iqi~~~~~~~~~~~~p~~i~~~l~~L~~~l~ 51 (698)
T 1x9m_A 1 MIVSDIEANALLESVTK--F---HCGVIYDYSTAEYVSYRPSDFGAYLDALEAEVA 51 (698)
T ss_dssp CEEEEEEESSCGGGCCC--E---EEEEEEETTTTEEEEECGGGHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCcCCCCCE--E---EEEEEEecCCCcEEEEChHHHHHHHHHHHHHHh
Confidence 68999999999987643 3 3333332 2222222 22234777888775
No 24
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}
Probab=39.89 E-value=21 Score=32.43 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=31.8
Q ss_pred HHHHHHhhCCC--CCccccchhhhccHHHHHhhhHHHH
Q 023627 52 LASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLF 87 (279)
Q Consensus 52 LatLA~~Fg~~--~~~HRALdDar~t~dVl~~catvll 87 (279)
|..||+.+|+. .+.|.|-.|+-.|..+|..+.-.+|
T Consensus 209 L~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~~f 246 (285)
T 4gmj_B 209 LQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFF 246 (285)
T ss_dssp HHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 99999999999 7889999999999999999554443
No 25
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=34.86 E-value=32 Score=34.72 Aligned_cols=26 Identities=15% Similarity=0.161 Sum_probs=20.9
Q ss_pred CceEEEEEeecCC---CCCCCCceeEEEEee
Q 023627 7 RFEIAFFDVETAF---PNPPGQRIAILEFGA 34 (279)
Q Consensus 7 ~~e~vffDvETT~---p~~~~~~~~ilEfgA 34 (279)
...+++||+||++ |++.. ..|+-+|.
T Consensus 134 ~l~ilsfDIEt~~~~~p~~~~--d~Ii~Is~ 162 (775)
T 1qht_A 134 ELTMLAFAIATLYHEGEEFGT--GPILMISY 162 (775)
T ss_dssp CCCEEEEEEEECCCTTCCTTC--SCEEEEEE
T ss_pred CcEEEEEEEEEcCCCCCCCCC--CcEEEEEE
Confidence 5679999999998 66544 78888885
No 26
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A
Probab=32.04 E-value=33 Score=32.26 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=32.9
Q ss_pred HHHHHHhhCCC--CCccccchhhhccHHHHHhhhHHHH
Q 023627 52 LASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATVLF 87 (279)
Q Consensus 52 LatLA~~Fg~~--~~~HRALdDar~t~dVl~~catvll 87 (279)
|..||+.+|+. .+.|.|=.|+-+|..+|.+++-++|
T Consensus 220 L~~lA~~L~v~Rig~~HqAGsDSlLT~~~F~kl~~~~f 257 (333)
T 2p51_A 220 LQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYF 257 (333)
T ss_dssp HHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCcchhhhhHHHHHHHHHHHHHHHhc
Confidence 89999999998 8889999999999999999777665
No 27
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=30.30 E-value=19 Score=27.69 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=23.2
Q ss_pred CCCCCcccceeeccCCCcceEEeccccccCC
Q 023627 178 RSNSEWNPVVTRQSGNDPAARLRIPTVVFGD 208 (279)
Q Consensus 178 gs~S~W~p~v~~~~gn~ptvRl~Ipt~~~gd 208 (279)
||-|+|++-+.+..|.--+.+|-+|...++.
T Consensus 1 ~~~s~W~qP~lk~~g~~KsL~Lf~P~gLt~~ 31 (75)
T 2fqm_A 1 GSHMDWKQPELESDEHGKTLRLTLPEGLSGE 31 (75)
T ss_dssp ----CCCCCEEEEETTEEEEEEECCSSCCHH
T ss_pred CCcccccCceeecCCCCceEEEeCCCCccHH
Confidence 6789999888798999999999999866553
No 28
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9
Probab=29.87 E-value=30 Score=31.00 Aligned_cols=34 Identities=15% Similarity=0.094 Sum_probs=30.4
Q ss_pred HHHHHHhhCCC--CCccccchhhhccHHHHHhhhHH
Q 023627 52 LASLATYFGLG--QQTHRSLDDVRMNLEVLKYCATV 85 (279)
Q Consensus 52 LatLA~~Fg~~--~~~HRALdDar~t~dVl~~catv 85 (279)
|..||+.+|+. .+.|.|=.|+-.|..+|.+++-+
T Consensus 199 L~~la~~L~v~r~g~~HqAGsDsllT~~~F~km~~~ 234 (252)
T 2d5r_A 199 LQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM 234 (252)
T ss_dssp HHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCcccchhhhHHHHHHHHHHHHHH
Confidence 99999999998 88999999999999999994433
Done!