Query 023628
Match_columns 279
No_of_seqs 149 out of 445
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 05:27:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023628.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023628hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2946 Uncharacterized conser 100.0 5.1E-58 1.1E-62 410.0 20.5 233 33-279 1-234 (234)
2 KOG3103 Rab GTPase interacting 100.0 4.9E-50 1.1E-54 361.8 17.2 167 106-277 81-249 (249)
3 COG5080 YIP1 Rab GTPase intera 100.0 1.2E-43 2.6E-48 315.7 13.7 169 104-278 56-227 (227)
4 KOG3114 Uncharacterized conser 99.0 3.9E-09 8.5E-14 99.2 10.7 129 110-241 81-233 (290)
5 PF04893 Yip1: Yip1 domain; I 98.3 7.3E-07 1.6E-11 74.0 5.2 130 114-253 2-153 (172)
6 PF03878 YIF1: YIF1; InterPro 96.7 0.0062 1.3E-07 56.5 7.5 136 109-250 39-195 (240)
7 KOG3094 Predicted membrane pro 92.3 0.85 1.8E-05 43.2 8.7 137 109-250 86-242 (284)
8 COG5197 Predicted membrane pro 86.7 7.4 0.00016 36.4 10.0 120 97-222 73-216 (284)
9 PF06930 DUF1282: Protein of u 70.4 23 0.00051 30.4 7.6 54 192-246 89-142 (170)
10 PF12238 MSA-2c: Merozoite sur 63.0 38 0.00082 31.1 7.7 27 17-43 126-152 (205)
11 PF06691 DUF1189: Protein of u 55.7 62 0.0013 29.5 7.9 36 188-223 188-224 (250)
12 COG5178 PRP8 U5 snRNP spliceos 50.8 14 0.00031 41.9 3.3 10 121-130 71-80 (2365)
13 KOG1418 Tandem pore domain K+ 43.6 14 0.00031 34.4 1.8 50 140-189 110-162 (433)
14 PHA01809 hypothetical protein 39.7 12 0.00026 27.6 0.5 14 16-29 37-50 (65)
15 KOG0559 Dihydrolipoamide succi 36.1 1.1E+02 0.0024 30.8 6.6 14 113-126 233-246 (457)
16 KOG1925 Rac1 GTPase effector F 32.9 1.2E+02 0.0026 32.0 6.4 41 8-49 201-241 (817)
17 KOG1785 Tyrosine kinase negati 32.5 54 0.0012 33.4 3.8 13 16-28 507-519 (563)
18 KOG2391 Vacuolar sorting prote 30.1 1.2E+02 0.0025 30.2 5.6 16 17-32 126-141 (365)
19 PF15050 SCIMP: SCIMP protein 29.2 99 0.0021 26.5 4.3 34 16-53 51-85 (133)
20 PRK14950 DNA polymerase III su 29.2 3.3E+02 0.0071 28.3 9.1 19 107-125 461-479 (585)
21 KOG3671 Actin regulatory prote 22.3 3E+02 0.0064 28.9 7.0 7 145-151 532-538 (569)
22 KOG3817 Uncharacterized conser 21.5 53 0.0012 33.0 1.6 55 144-200 135-194 (452)
23 PF15449 Retinal: Retinal prot 21.3 3.4E+02 0.0074 31.1 7.6 12 119-130 1137-1148(1287)
24 PF04061 ORMDL: ORMDL family ; 20.9 67 0.0015 27.7 1.9 18 253-270 86-103 (136)
25 PHA00007 E cell lysis protein 20.3 80 0.0017 25.2 2.0 20 141-160 1-20 (91)
No 1
>KOG2946 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.1e-58 Score=410.04 Aligned_cols=233 Identities=51% Similarity=0.848 Sum_probs=204.5
Q ss_pred cCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCcchhhH
Q 023628 33 VLPARPPSPPRPATIPVSSAPFIQSNIPPPPPTSSNQKVPSVPVPPPLPSSTISGGSRPNIASTGFGSPPNTLTEPVWDT 112 (279)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~e~~tLDEPllee 112 (279)
+.++||++++| .|+++++ +.+.+|-.+. ....++.++|...++|+|. ...++.+|+||||||+|||
T Consensus 1 ~~~~~~~s~~~-~s~~~~s----~t~~ep~~~s----~~~~~~~~~p~~~a~n~g~-----g~~~~~~e~dTldePv~~t 66 (234)
T KOG2946|consen 1 VLDPRPHSPER-PSIEMES----QTMLEPVFAS----PSVEAPASAPGNSAGNSGF-----GWLLEVNEEDTLDEPVLET 66 (234)
T ss_pred CCCCCCCCCCC-CCcCccC----cccCCccccC----ccccCCCCCCcccccccCc-----ccccccCCCCcccchHHHH
Confidence 35789999999 8899987 2233311111 1122355566667777774 4677889999999999999
Q ss_pred hhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccCCCcceEEehhHHHHHHHHHHHHHHHHh
Q 023628 113 VKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVILTLNVLL 192 (279)
Q Consensus 113 LgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk~~fg~IFg~vF~i~~~gsi~l~LN~~l 192 (279)
++||+++|+.|+|+|++|+|.++|+.+.+||||||||++||+.+|++|++++......+|+++|+++|+|+.++++|+|+
T Consensus 67 lkrD~~~I~~kl~~Vl~P~py~~dk~~~lRDwDlWGPl~~~~~la~iL~~s~~~~~~~vFs~vf~i~wfG~~vvtln~kL 146 (234)
T KOG2946|consen 67 LKRDLRAIGSKLKHVLYPHPYFEDKGQLLRDWDLWGPLFFCVFLALILSLSGSVKSASVFAVVFAILWFGAVVVTLNIKL 146 (234)
T ss_pred HHHHHHHHHhceEEEEccCCCcccccceeecccccchhHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987655589999999999999999999999
Q ss_pred cCcceeeeeeehhhccchHHHHHHH-HHHHHhcchhHHHHHHHHHHHHHHHhHHHHHhhhccCCceEEeehhHHHHHHHH
Q 023628 193 LGGHIIFFQSLSLLGYCLFPLDIGA-LICMLKDNVLVKVIVVCVTLAWSSWAAYPFMSSAVNPRRKALALYPVFLMYVSV 271 (279)
Q Consensus 193 lgg~Isf~qsvSVLGYcLlPLVi~s-lI~~~~~~~~lr~il~~l~v~WSt~sAs~f~~~~v~~~rr~Lv~YPi~LfY~~f 271 (279)
+||+|+|+|++|++||||||+++.+ +++++....++|++++.++.+||+|+|..|++..+.++||.|++||+||||+.+
T Consensus 147 LGgnIs~fQsl~IlGYCLfPl~v~ali~~~~~~l~~lr~vv~~~~~~WSsyaa~~~l~~~~~~~kk~LavYPvFL~y~~~ 226 (234)
T KOG2946|consen 147 LGGNISFFQSLCILGYCLFPLVVAALIICLFRDLFFLRLVVTSIGLAWSSYAAMGFLSISQLPRKKLLAVYPVFLFYFSV 226 (234)
T ss_pred hCCceeEEeehhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccceehhhHHHHHHhh
Confidence 9999999999999999999999997 667777788999999999999999999999999999999999999999999999
Q ss_pred hhheeEcC
Q 023628 272 GFLIIAID 279 (279)
Q Consensus 272 a~LvIf~~ 279 (279)
+||++..|
T Consensus 227 s~lii~~n 234 (234)
T KOG2946|consen 227 SWLIISHN 234 (234)
T ss_pred heEEEecC
Confidence 99998765
No 2
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-50 Score=361.79 Aligned_cols=167 Identities=25% Similarity=0.496 Sum_probs=157.5
Q ss_pred CcchhhHhhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccCCCcceEEehhHHHHHHHHHH
Q 023628 106 TEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGAVI 185 (279)
Q Consensus 106 DEPlleeLgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk~~fg~IFg~vF~i~~~gsi~ 185 (279)
|||+|||||||++||++|+|+|| ||+|..++++++|.||||||+||++|++.|+++||.|||||||+ +++.+.++|
T Consensus 81 EpPLLEELgInf~hI~~KT~~VL--nP~r~~~q~i~~d~DlaGPlvf~L~f~~flLl~gKi~FgyIygi--~~~gsl~iy 156 (249)
T KOG3103|consen 81 EPPLLEELGINFDHIKQKTRAVL--NPFRSADQSIMKDTDLAGPLVFCLLFGLFLLLAGKIHFGYIYGI--SLLGSLSIY 156 (249)
T ss_pred CCchHHHhCCCHHHHHHHHhhee--cccccCceEEecCcccccchHHHHHHHHHHHhcCceEEEEEeee--HHHHHHHHH
Confidence 56688999999999999999999 88998889999999999999999999999999999999999996 688999999
Q ss_pred HHHHHHhcCcceeeeeeehhhccchHHHHHHHHHHHHhc-chhHHHHHHHHHHHHHHHhHHHHHhhhc-cCCceEEeehh
Q 023628 186 LTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKD-NVLVKVIVVCVTLAWSSWAAYPFMSSAV-NPRRKALALYP 263 (279)
Q Consensus 186 l~LN~~llgg~Isf~qsvSVLGYcLlPLVi~slI~~~~~-~~~lr~il~~l~v~WSt~sAs~f~~~~v-~~~rr~Lv~YP 263 (279)
.++|+|. .++++|.+|+|||||||+|+|++|.+++++. ++.+|+++++++++||||+|+++|+... +++||.|++||
T Consensus 157 ~L~nlm~-~~nv~f~~~aSVlGYcLLPlvvlS~v~i~~~~~g~vg~il~~~~v~W~t~aaS~lfv~al~~~~~rlLiaYp 235 (249)
T KOG3103|consen 157 FLLNLMS-NKNVSFGCVASVLGYCLLPLVVLSFVNIFVGLQGTVGYILSALFVLWCTYAASKLFVSALSMENQRLLVAYP 235 (249)
T ss_pred HHHHHHh-hcCcceeeehHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhH
Confidence 9999876 6789999999999999999999999998876 5789999999999999999999999855 79999999999
Q ss_pred HHHHHHHHhhheeE
Q 023628 264 VFLMYVSVGFLIIA 277 (279)
Q Consensus 264 i~LfY~~fa~LvIf 277 (279)
|+|+|.+|+|+++|
T Consensus 236 ~~l~Y~~Fall~if 249 (249)
T KOG3103|consen 236 CALLYGVFALIVIF 249 (249)
T ss_pred HHHHHhhheeEEeC
Confidence 99999999999986
No 3
>COG5080 YIP1 Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.2e-43 Score=315.70 Aligned_cols=169 Identities=28% Similarity=0.540 Sum_probs=151.7
Q ss_pred CCCcchhhHhhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccCCCcceEEehhHHHHHHHH
Q 023628 104 TLTEPVWDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSASVKKSEVFAVAFALLAAGA 183 (279)
Q Consensus 104 tLDEPlleeLgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk~~fg~IFg~vF~i~~~gs 183 (279)
-.|||++|||++|+.+|++|++.|+.| ++..+.++++||||||||+||+++++.|++++|.||||||+ +.|.|.
T Consensus 56 p~d~pLleel~i~F~~i~~ks~~vl~p--~~~~~~~i~~d~DL~gPliF~lL~sLfLsla~~shFgyiy~----islfg~ 129 (227)
T COG5080 56 PGDPPLLEELGINFGHIKSKSDDVLGP--FDNKAFDILADCDLWGPLIFILLYSLFLSLAGKSHFGYIYG----ISLFGT 129 (227)
T ss_pred CCCccHHHHhcccccccccccceeeec--ccccchhhhhcccccccHHHHHHHHHHHHhcccceeehhhH----HHHHHH
Confidence 348999999999999999999999955 55555689999999999999999999999999999998885 678999
Q ss_pred HHHHHHHHhcC-cceeeeeeehhhccchHHHHHHHHHHHHhcc-hhHHHHHHHHHHHHHHHhHHHHHhhhc-cCCceEEe
Q 023628 184 VILTLNVLLLG-GHIIFFQSLSLLGYCLFPLDIGALICMLKDN-VLVKVIVVCVTLAWSSWAAYPFMSSAV-NPRRKALA 260 (279)
Q Consensus 184 i~l~LN~~llg-g~Isf~qsvSVLGYcLlPLVi~slI~~~~~~-~~lr~il~~l~v~WSt~sAs~f~~~~v-~~~rr~Lv 260 (279)
+.+.++++++| ++|+|+|++||+|||+||+|+.|+++.+... ...+.+++.+|.+||+|+|+.++++.. .+++|.|+
T Consensus 130 lsl~~~lrLl~~~ni~f~~~~SIlGYs~lPlv~~slv~~i~~~i~i~~~vv~~l~~~Ws~~AaS~v~~~~l~l~n~~llv 209 (227)
T COG5080 130 LSLHLLLRLLGHKNISFFSTISILGYSLLPLVFNSLVSIILGRILILGYVVVALFLIWSTYAASGVLKSKLQLSNKRLLV 209 (227)
T ss_pred HHHHHHHHHhccCceeeeehhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 99999999998 8999999999999999999999999988753 345566666699999999999999654 78999999
Q ss_pred ehhHHHHHHHHhhheeEc
Q 023628 261 LYPVFLMYVSVGFLIIAI 278 (279)
Q Consensus 261 ~YPi~LfY~~fa~LvIf~ 278 (279)
+||++|||.+|+|+++|+
T Consensus 210 ~Ypl~LFY~~fa~ii~f~ 227 (227)
T COG5080 210 VYPLLLFYNVFAIIIKFN 227 (227)
T ss_pred HHHHHHHHhhheEEEEeC
Confidence 999999999999999885
No 4
>KOG3114 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=3.9e-09 Score=99.24 Aligned_cols=129 Identities=21% Similarity=0.319 Sum_probs=82.8
Q ss_pred hhHhhccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccC--------CCcceEEehhHHHHH-
Q 023628 110 WDTVKRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSAS--------VKKSEVFAVAFALLA- 180 (279)
Q Consensus 110 leeLgiD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk--------~~fg~IFg~vF~i~~- 180 (279)
..-+++|..|+++|++.+++|+.+ ...+.-.++|||||+++|.++.+++..+|. ...|+-++..|..+.
T Consensus 81 q~fFdVDt~qV~~Rl~~SliP~~~--~~~~~~~~PDLYGPfWI~~TlVf~l~~~g~~~~~i~~~t~~g~~~g~~f~~v~s 158 (290)
T KOG3114|consen 81 QPFFDVDTAQVRKRLKESLIPRNY--VRDQIQDNPDLYGPFWITATLVFALAISGNLATFIRNGTLKGTAYGYDFGLVTS 158 (290)
T ss_pred ccccCCCHHHHHHHHHHhcCCccc--cccccCCCccccccHHHHHHHHHHHHHcccHHHHHHhccccceeeecccchHHH
Confidence 345789999999999999999322 122233469999999999999999988773 112333333333222
Q ss_pred -HHHHHHHHHH---------Hh-----cCcceeeeeeehhhccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Q 023628 181 -AGAVILTLNV---------LL-----LGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSS 241 (279)
Q Consensus 181 -~gsi~l~LN~---------~l-----lgg~Isf~qsvSVLGYcLlPLVi~slI~~~~~~~~lr~il~~l~v~WSt 241 (279)
...+|.+++. +. ++...+++..+|+.||+++......+++. .+-.+++++++..+..=|.
T Consensus 159 aa~~iy~Y~~ivp~~l~~iL~~~~~~~~~~~~~l~~~~~iygysl~i~ip~~vl~i-v~~~~~~wvl~~~~~~~S~ 233 (290)
T KOG3114|consen 159 AATLIYGYLTIVPLALWGILSWNGYSLLLHCYVLLELVCIYGYSLFIFIPLLVLWI-VPSSMVQWVLVGTALGLSG 233 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccceehhhHHHHHhhHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhH
Confidence 2222222111 11 23457788899999999999998444443 4445778877776655443
No 5
>PF04893 Yip1: Yip1 domain; InterPro: IPR006977 This entry contains proteins belonging to the Yip1 family and represents the Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterised by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases [].; GO: 0016020 membrane
Probab=98.33 E-value=7.3e-07 Score=74.02 Aligned_cols=130 Identities=20% Similarity=0.238 Sum_probs=89.2
Q ss_pred hccHHHHHhhcceeeeeCCCCCCCCCcccCCCchhhHHHHHHHHHHHHhccC-------------CCcc----eEEehhH
Q 023628 114 KRDLSRIVSNLKLVVFPNPYREDPGKALRDWDLWGPFFFIVFLGLTLSWSAS-------------VKKS----EVFAVAF 176 (279)
Q Consensus 114 giD~~~I~~Kl~~VL~Pnp~r~~~~~~l~DwDLwGPLlf~L~la~~Lllsgk-------------~~fg----~IFg~vF 176 (279)
.+|+++..+|++.-- +..+++|++++++.++.+...+..+++ .+++ .+++..+
T Consensus 2 l~~P~~~f~~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (172)
T PF04893_consen 2 LFSPREFFRRLRESP----------RISKSWWLPLLLVILLTLVFGLLSSLNIPWYVDSGGSAYMFSFGSLLGSIIGGFI 71 (172)
T ss_pred ccCHHHHHHHHHhcc----------ccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 367778888776521 134679999999999988887776631 1111 1111111
Q ss_pred ---HHHHHHHHHHHHHHHhcCcceeeeeeehhhccchHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHHhHHHHHhhh
Q 023628 177 ---ALLAAGAVILTLNVLLLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDN--VLVKVIVVCVTLAWSSWAAYPFMSSA 251 (279)
Q Consensus 177 ---~i~~~gsi~l~LN~~llgg~Isf~qsvSVLGYcLlPLVi~slI~~~~~~--~~lr~il~~l~v~WSt~sAs~f~~~~ 251 (279)
..+.+++..+.+-.+..||+-++.|+.|+.|||++|.++..++..+... ..+...+..++.+|+.+.....+...
T Consensus 72 ~~~i~~~i~~~~~~~~~~~~gg~~~~~~~~~~~~ya~~P~~~~~~~~~~~~~~~~~~~~~~~~l~~iw~~~l~~~gl~~~ 151 (172)
T PF04893_consen 72 IILIGWFILALILHLIAKLFGGKGSFKETFSVVGYALIPLLLGSLISIILSLFFGPLSLLVIILFSIWSAYLLVIGLREV 151 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223334445556667899999999999999999999999999876532 22455667888899999988877766
Q ss_pred cc
Q 023628 252 VN 253 (279)
Q Consensus 252 v~ 253 (279)
.+
T Consensus 152 ~~ 153 (172)
T PF04893_consen 152 HR 153 (172)
T ss_pred hC
Confidence 53
No 6
>PF03878 YIF1: YIF1; InterPro: IPR005578 This family includes a number of eukaryotic proteins. It is an integral membrane protein, conserved in at least 1 copy in all sequenced eukaryotes. The gene name in Schizosaccharomyces pombe (Fission yeast) is hrf1+ for Heavy metal Resistance Factor 1.
Probab=96.67 E-value=0.0062 Score=56.47 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=85.3
Q ss_pred hhhHhhccHHHHHhhcceeeeeCCCCC-----------CCCCcccCCCchhhHHHHHHHHHHHHhcc--CCCc-----ce
Q 023628 109 VWDTVKRDLSRIVSNLKLVVFPNPYRE-----------DPGKALRDWDLWGPFFFIVFLGLTLSWSA--SVKK-----SE 170 (279)
Q Consensus 109 lleeLgiD~~~I~~Kl~~VL~Pnp~r~-----------~~~~~l~DwDLwGPLlf~L~la~~Lllsg--k~~f-----g~ 170 (279)
+.--+.+|-.=|.+|++.+++|-..|. .+++.+.-+||.=|++-+++|.++-.+.. +.+| |.
T Consensus 39 lk~YF~V~n~YV~~KL~lllfPf~~k~W~r~~~~~~~~~Pr~DvNAPDLYIPlMa~vTYiLl~g~~~G~~g~F~Pe~Lg~ 118 (240)
T PF03878_consen 39 LKYYFAVDNSYVLKKLKLLLFPFLHKDWSRKYEQESYLPPREDVNAPDLYIPLMAFVTYILLSGLILGLQGRFSPELLGI 118 (240)
T ss_pred ceeeEECCHHHHHHHHHHeecccccCCccccccccCCCCchhhccCcccccchHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 566678999999999999998832221 01234556999999999988877544321 2234 23
Q ss_pred EEehhHHHHHHHHH-HHHHHHHhcCc--ceeeeeeehhhccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhHHHH
Q 023628 171 VFAVAFALLAAGAV-ILTLNVLLLGG--HIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPF 247 (279)
Q Consensus 171 IFg~vF~i~~~gsi-~l~LN~~llgg--~Isf~qsvSVLGYcLlPLVi~slI~~~~~~~~lr~il~~l~v~WSt~sAs~f 247 (279)
..+..+ ++|..-+ ++.+...+++. ++++...+|..||-..++++..++..+... +. .-++.+|.+.+..-|
T Consensus 119 ~~s~al-~~~~lEv~i~k~~~y~l~~~~~~~~lDlvay~GYKfv~ii~~~l~~~l~~~-~~----yy~~~ly~~~a~~~F 192 (240)
T PF03878_consen 119 QASSAL-VWWFLEVLIIKLGLYLLNISSSLPILDLVAYSGYKFVGIILTLLASLLFGS-WV----YYIALLYTSFANAFF 192 (240)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCCCCCHHHHHHhhcchHHHHHHHHHHHHHccc-HH----HHHHHHHHHHHHHHH
Confidence 333222 1222222 33444444554 788888999999999999888877766432 22 223556776666555
Q ss_pred Hhh
Q 023628 248 MSS 250 (279)
Q Consensus 248 ~~~ 250 (279)
+.+
T Consensus 193 l~R 195 (240)
T PF03878_consen 193 LLR 195 (240)
T ss_pred HHH
Confidence 543
No 7
>KOG3094 consensus Predicted membrane protein [Function unknown]
Probab=92.25 E-value=0.85 Score=43.20 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=82.1
Q ss_pred hhhHhhccHHHHHhhcceeeeeCCCC----CC-------CCCcccCCCchhhHHHHHHHHHHHHh--ccCCCcc-eEEeh
Q 023628 109 VWDTVKRDLSRIVSNLKLVVFPNPYR----ED-------PGKALRDWDLWGPFFFIVFLGLTLSW--SASVKKS-EVFAV 174 (279)
Q Consensus 109 lleeLgiD~~~I~~Kl~~VL~Pnp~r----~~-------~~~~l~DwDLwGPLlf~L~la~~Lll--sgk~~fg-~IFg~ 174 (279)
+.--+.+|-.=|++|++.+++|-..| .. .++.++-+||.=|++=.+++.++..+ +-+.+|+ ..+++
T Consensus 86 l~yYF~Vdn~YV~~KL~lilfPf~hk~W~~~~~~~~~~PPr~DvNaPDLYiP~MafiTYIll~gl~lGlqg~FsPE~Lg~ 165 (284)
T KOG3094|consen 86 LKYYFAVDNAYVGKKLKLILFPFLHKDWTRIYERESPLPPRYDVNAPDLYIPLMAFITYILLAGLLLGLQGRFSPEALGI 165 (284)
T ss_pred ceEEEEechHHHhhhheEEEeeecCcchhhhhcccCCCCccccCCCcchhhhHHHHHHHHHHHHHHhhhccCCCHHHHHH
Confidence 44557788999999999999883211 11 12356679999999988877765333 2233343 34444
Q ss_pred hHH---HHHHHHHHH-HHHHHhcC--cceeeeeeehhhccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhHHHHH
Q 023628 175 AFA---LLAAGAVIL-TLNVLLLG--GHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYPFM 248 (279)
Q Consensus 175 vF~---i~~~gsi~l-~LN~~llg--g~Isf~qsvSVLGYcLlPLVi~slI~~~~~~~~lr~il~~l~v~WSt~sAs~f~ 248 (279)
.++ ++|+..+.+ .+-+.+++ +..+....+|--||-..+++++.+..++... . .-.+...|-+.+-.-|+
T Consensus 166 ~~s~al~~v~le~l~l~l~lY~l~vs~~ls~ldllAysGYKfv~liL~~L~k~~~~~--~---~yyi~~~yt~~a~gvFL 240 (284)
T KOG3094|consen 166 LASKALAWVILEVLLLKLGLYLLNVSSSLSTLDLLAYSGYKFVGLILAQLTKLLFGP--Y---GYYIALAYTYLAFGVFL 240 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecccCCcchhHhhhhcccchHHHHHHHHhhheecc--h---hHHHHHHHHHHHHHHHH
Confidence 332 233333332 22222333 4677888889999999999988887765321 1 12334466665555555
Q ss_pred hh
Q 023628 249 SS 250 (279)
Q Consensus 249 ~~ 250 (279)
.+
T Consensus 241 lR 242 (284)
T KOG3094|consen 241 LR 242 (284)
T ss_pred HH
Confidence 54
No 8
>COG5197 Predicted membrane protein [Function unknown]
Probab=86.65 E-value=7.4 Score=36.45 Aligned_cols=120 Identities=18% Similarity=0.223 Sum_probs=73.4
Q ss_pred CCCCCCCCCCcchhhHhhccHHHHHhhcceeeeeCCCC----CCC-------CCcccCCCchhhHHHHHHHHHHHHhcc-
Q 023628 97 GFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVVFPNPYR----EDP-------GKALRDWDLWGPFFFIVFLGLTLSWSA- 164 (279)
Q Consensus 97 gf~~e~~tLDEPlleeLgiD~~~I~~Kl~~VL~Pnp~r----~~~-------~~~l~DwDLwGPLlf~L~la~~Lllsg- 164 (279)
++++.-+ ..++..-+.+|-+-+.+|++.+++|-..| ..+ .+.+..+|++=|++=.+++-++.-.-.
T Consensus 73 ~~g~~~s--~~~~~tYF~V~n~yVi~KL~LIlfPf~nk~W~r~gd~eg~~pp~~d~nsPdmY~P~M~fvtyILl~~~~~G 150 (284)
T COG5197 73 ATGNAAS--SQQISTYFQVSNRYVINKLKLILFPFLNKNWQRIGDSEGFLPPRDDVNSPDMYMPIMGFVTYILLWNTQQG 150 (284)
T ss_pred hhccccc--ccceeEEEEechHhHHhhhheEEeecccchhhhccCCCCCCCchhhcCCccccchHHHHHHHHHHHHHHhh
Confidence 3444434 35677778899999999999999884322 111 234677999999998887766543321
Q ss_pred -CCC-----cceEEehhHHHHHHHHHHHHHHHHh----c--CcceeeeeeehhhccchHHHHHHHHHHHH
Q 023628 165 -SVK-----KSEVFAVAFALLAAGAVILTLNVLL----L--GGHIIFFQSLSLLGYCLFPLDIGALICML 222 (279)
Q Consensus 165 -k~~-----fg~IFg~vF~i~~~gsi~l~LN~~l----l--gg~Isf~qsvSVLGYcLlPLVi~slI~~~ 222 (279)
|.. +|+.++-.++++ .+-++-.++ + +..-+|...+|--||=..|++++.+...+
T Consensus 151 L~g~F~PE~lg~~~s~~~a~v----~v~~l~trlg~Yll~~s~~~~~ldllaysGYKfV~liL~qL~k~~ 216 (284)
T COG5197 151 LKGSFNPEDLGYKLSSTLAFV----CVDLLITRLGLYLLIDSKIPSFLDLLAYSGYKFVPLILAQLLKNV 216 (284)
T ss_pred cccCCCHHHhhHHHHHHHHHH----HHHHHHHHhceEEEeecccchhhhhhhhcccccHHHHHHHHhhhc
Confidence 223 445444322221 111222232 1 12224667789999999999998887744
No 9
>PF06930 DUF1282: Protein of unknown function (DUF1282); InterPro: IPR009698 This entry represents several hypothetical proteins of around 200 residues in length. The function of is unknown although a number of the members are thought to be putative membrane proteins.
Probab=70.38 E-value=23 Score=30.39 Aligned_cols=54 Identities=20% Similarity=0.429 Sum_probs=39.8
Q ss_pred hcCcceeeeeeehhhccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhHHH
Q 023628 192 LLGGHIIFFQSLSLLGYCLFPLDIGALICMLKDNVLVKVIVVCVTLAWSSWAAYP 246 (279)
Q Consensus 192 llgg~Isf~qsvSVLGYcLlPLVi~slI~~~~~~~~lr~il~~l~v~WSt~sAs~ 246 (279)
..+++-++-|+.-..+|...|+.+..++...... ++......++..|+.+--.-
T Consensus 89 ~~~~~~s~~~~~~~a~y~~tPl~L~~i~~~~~~~-~l~~~~~~~~~~~~~~Lly~ 142 (170)
T PF06930_consen 89 TFGGRPSYKKCLAFAAYAATPLFLGGIVNLYPSL-WLTLLVGLIALIYSVYLLYL 142 (170)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3557778889999999999999999988876543 34445556666777665433
No 10
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=62.97 E-value=38 Score=31.09 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=21.9
Q ss_pred CCHHHHHHHhhhCCCccCCCCCCCCCC
Q 023628 17 SDIDEIENLINASPATVLPARPPSPPR 43 (279)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (279)
.+.|+-|.|+...|+...+.+++++.+
T Consensus 126 ~~~~~f~elVkk~p~~~ss~~~sS~q~ 152 (205)
T PF12238_consen 126 KAFNTFEELVKKKPAQPSSPTPSSPQG 152 (205)
T ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCC
Confidence 467888989999998888888777775
No 11
>PF06691 DUF1189: Protein of unknown function (DUF1189); InterPro: IPR009574 This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.
Probab=55.66 E-value=62 Score=29.48 Aligned_cols=36 Identities=17% Similarity=0.252 Sum_probs=27.1
Q ss_pred HHHHhcCcceeeeeeehhhccch-HHHHHHHHHHHHh
Q 023628 188 LNVLLLGGHIIFFQSLSLLGYCL-FPLDIGALICMLK 223 (279)
Q Consensus 188 LN~~llgg~Isf~qsvSVLGYcL-lPLVi~slI~~~~ 223 (279)
+..+..+..++|-|+..+.-||. +|.++.+++..+.
T Consensus 188 i~~~~~~~~lsy~~~~ki~~yA~TlP~ll~~i~~~l~ 224 (250)
T PF06691_consen 188 IIAKIMKRKLSYKQLWKISIYAITLPTLLFAIIGLLG 224 (250)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445678899999999999998 5666677777663
No 12
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=50.79 E-value=14 Score=41.92 Aligned_cols=10 Identities=10% Similarity=-0.144 Sum_probs=5.3
Q ss_pred Hhhcceeeee
Q 023628 121 VSNLKLVVFP 130 (279)
Q Consensus 121 ~~Kl~~VL~P 130 (279)
+.|..+|+-+
T Consensus 71 kak~~~v~t~ 80 (2365)
T COG5178 71 KAKTLHVLTL 80 (2365)
T ss_pred hhhheeeecc
Confidence 3455566644
No 13
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]
Probab=43.64 E-value=14 Score=34.38 Aligned_cols=50 Identities=16% Similarity=0.432 Sum_probs=35.0
Q ss_pred cccCCCchhhHHHHHHHHHHHHhcc---CCCcceEEehhHHHHHHHHHHHHHH
Q 023628 140 ALRDWDLWGPFFFIVFLGLTLSWSA---SVKKSEVFAVAFALLAAGAVILTLN 189 (279)
Q Consensus 140 ~l~DwDLwGPLlf~L~la~~Lllsg---k~~fg~IFg~vF~i~~~gsi~l~LN 189 (279)
.-..||+|+-++||.+.-.+...+. +...|.+|.++|+++++--+.++++
T Consensus 110 ~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~ 162 (433)
T KOG1418|consen 110 DTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILA 162 (433)
T ss_pred CCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHH
Confidence 3456999999999999877775533 2335778888888777766555444
No 14
>PHA01809 hypothetical protein
Probab=39.67 E-value=12 Score=27.62 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=12.0
Q ss_pred CCCHHHHHHHhhhC
Q 023628 16 QSDIDEIENLINAS 29 (279)
Q Consensus 16 ~~~~~~~~~~~~~~ 29 (279)
.-||||||.|-|.|
T Consensus 37 dvdideiedlnhns 50 (65)
T PHA01809 37 DVDIDEIEDLNHNS 50 (65)
T ss_pred ecChHHhhhcccch
Confidence 46999999998876
No 15
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=36.14 E-value=1.1e+02 Score=30.80 Aligned_cols=14 Identities=36% Similarity=0.294 Sum_probs=8.0
Q ss_pred hhccHHHHHhhcce
Q 023628 113 VKRDLSRIVSNLKL 126 (279)
Q Consensus 113 LgiD~~~I~~Kl~~ 126 (279)
..|=-.+|.+|||.
T Consensus 233 MnRmR~RIA~RLKd 246 (457)
T KOG0559|consen 233 MNRMRLRIAERLKD 246 (457)
T ss_pred hHHHHHHHHHHHHh
Confidence 34444566666665
No 16
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=32.94 E-value=1.2e+02 Score=32.01 Aligned_cols=41 Identities=24% Similarity=0.294 Sum_probs=27.7
Q ss_pred CccCCCCCCCCHHHHHHHhhhCCCccCCCCCCCCCCCCCCCc
Q 023628 8 TIPLHASSQSDIDEIENLINASPATVLPARPPSPPRPATIPV 49 (279)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (279)
+-|+.-.-|+-|.|+..=-.++ .++-+..|+.|+.|..||.
T Consensus 201 ~~P~~~~~~s~~~~~~~~~~R~-~~~~~~~P~~P~~P~~~P~ 241 (817)
T KOG1925|consen 201 TAPAARTPQSPAPCVLLRAQRS-LAPEPKEPLIPASPKELPT 241 (817)
T ss_pred cChHhhCcCCCchHHHHhhhhc-CCCCCCCCCCCCChhccCC
Confidence 5567667788888875544444 4566667777777777876
No 17
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=32.53 E-value=54 Score=33.39 Aligned_cols=13 Identities=31% Similarity=0.493 Sum_probs=7.4
Q ss_pred CCCHHHHHHHhhh
Q 023628 16 QSDIDEIENLINA 28 (279)
Q Consensus 16 ~~~~~~~~~~~~~ 28 (279)
+..+.|.|+.-+.
T Consensus 507 ~~~~k~l~~v~~~ 519 (563)
T KOG1785|consen 507 GVNIKELENVETS 519 (563)
T ss_pred Ccchhhhhccccc
Confidence 5566666655443
No 18
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.05 E-value=1.2e+02 Score=30.18 Aligned_cols=16 Identities=19% Similarity=0.289 Sum_probs=9.4
Q ss_pred CCHHHHHHHhhhCCCc
Q 023628 17 SDIDEIENLINASPAT 32 (279)
Q Consensus 17 ~~~~~~~~~~~~~~~~ 32 (279)
.=+.|+-..+++-|.-
T Consensus 126 ~Liq~l~a~f~~~pP~ 141 (365)
T KOG2391|consen 126 GLIQELIAAFSEDPPV 141 (365)
T ss_pred HHHHHHHHHhcCCCcc
Confidence 3356666666666533
No 19
>PF15050 SCIMP: SCIMP protein
Probab=29.20 E-value=99 Score=26.48 Aligned_cols=34 Identities=44% Similarity=0.803 Sum_probs=21.0
Q ss_pred CCCHHHH-HHHhhhCCCccCCCCCCCCCCCCCCCccCCC
Q 023628 16 QSDIDEI-ENLINASPATVLPARPPSPPRPATIPVSSAP 53 (279)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (279)
|-|.+++ ||.+|.+|. +-||.|||--.-|-.++|
T Consensus 51 ~rdeEkmYENv~n~~~~----~LPpLPPRg~~s~~~~sp 85 (133)
T PF15050_consen 51 QRDEEKMYENVLNQSPV----QLPPLPPRGSPSPEDSSP 85 (133)
T ss_pred cccHHHHHHHhhcCCcC----CCCCCCCCCCCCccccCc
Confidence 4566665 899998864 346778884433334444
No 20
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=29.19 E-value=3.3e+02 Score=28.26 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=11.6
Q ss_pred cchhhHhhccHHHHHhhcc
Q 023628 107 EPVWDTVKRDLSRIVSNLK 125 (279)
Q Consensus 107 EPlleeLgiD~~~I~~Kl~ 125 (279)
+.++++|.+.-.+|.+.++
T Consensus 461 ~~~~~~~~~~w~~~~~~~~ 479 (585)
T PRK14950 461 GDVLEQLEAIWKQILRDVP 479 (585)
T ss_pred chhHHHHHHHHHHHHHHHh
Confidence 4466776666666666554
No 21
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.26 E-value=3e+02 Score=28.87 Aligned_cols=7 Identities=29% Similarity=0.339 Sum_probs=3.6
Q ss_pred CchhhHH
Q 023628 145 DLWGPFF 151 (279)
Q Consensus 145 DLwGPLl 151 (279)
-|.|++.
T Consensus 532 ~lagal~ 538 (569)
T KOG3671|consen 532 GLAGALA 538 (569)
T ss_pred ccccHHH
Confidence 3555554
No 22
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.51 E-value=53 Score=32.97 Aligned_cols=55 Identities=20% Similarity=0.372 Sum_probs=29.8
Q ss_pred CCchhhHHHHHHHHHHHHhccC-CCcc----eEEehhHHHHHHHHHHHHHHHHhcCcceeee
Q 023628 144 WDLWGPFFFIVFLGLTLSWSAS-VKKS----EVFAVAFALLAAGAVILTLNVLLLGGHIIFF 200 (279)
Q Consensus 144 wDLwGPLlf~L~la~~Lllsgk-~~fg----~IFg~vF~i~~~gsi~l~LN~~llgg~Isf~ 200 (279)
-|+|= +..++.|++|.+.|+ ...+ |--|.++|+....-+++++-.+..-++-.++
T Consensus 135 ~d~kr--flvfv~gi~Lff~ar~Lsrn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt~~~ 194 (452)
T KOG3817|consen 135 LDLKR--FLVFVVGILLFFSARRLSRNSVFYYSSGIVIGILASLLVVIFLVARFFPKKTMMY 194 (452)
T ss_pred ccHHH--HHHHHHHHHHHHHHHHhccCceEEEecccHHHHHHHHHHHHHHHHHhcccccceE
Confidence 57774 444555666666553 2333 3336666766666566666666554433333
No 23
>PF15449 Retinal: Retinal protein
Probab=21.30 E-value=3.4e+02 Score=31.08 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=5.8
Q ss_pred HHHhhcceeeee
Q 023628 119 RIVSNLKLVVFP 130 (279)
Q Consensus 119 ~I~~Kl~~VL~P 130 (279)
.+..+...++.|
T Consensus 1137 K~~~Nt~SIFCP 1148 (1287)
T PF15449_consen 1137 KVSGNTCSIFCP 1148 (1287)
T ss_pred cccCCccceecc
Confidence 344445555544
No 24
>PF04061 ORMDL: ORMDL family ; InterPro: IPR007203 ORMDL1 belongs to a novel gene family comprising three genes in humans (ORMDL1, ORMDL2 and ORMDL3), and homologs in yeast, microsporidia, plants, Drosophila, urochordates and vertebrates. ORMDLs are involved in protein folding in the endoplasmic reticulum. ; GO: 0016021 integral to membrane
Probab=20.88 E-value=67 Score=27.72 Aligned_cols=18 Identities=33% Similarity=0.724 Sum_probs=15.5
Q ss_pred cCCceEEeehhHHHHHHH
Q 023628 253 NPRRKALALYPVFLMYVS 270 (279)
Q Consensus 253 ~~~rr~Lv~YPi~LfY~~ 270 (279)
.+.||+|.+.|+.||...
T Consensus 86 TptrKFL~~vPivLflla 103 (136)
T PF04061_consen 86 TPTRKFLTIVPIVLFLLA 103 (136)
T ss_pred CcceeeeehhHHHHHHHH
Confidence 368999999999999764
No 25
>PHA00007 E cell lysis protein
Probab=20.30 E-value=80 Score=25.17 Aligned_cols=20 Identities=30% Similarity=0.718 Sum_probs=17.0
Q ss_pred ccCCCchhhHHHHHHHHHHH
Q 023628 141 LRDWDLWGPFFFIVFLGLTL 160 (279)
Q Consensus 141 l~DwDLwGPLlf~L~la~~L 160 (279)
+..|.|||=+.|.+++++.|
T Consensus 1 Me~WTL~~~LAFLLLLSLlL 20 (91)
T PHA00007 1 MEHWTLSDTLAFLLLLSLLL 20 (91)
T ss_pred CceeeHHHHHHHHHHHHHHH
Confidence 35799999999999999864
Done!