Query 023628
Match_columns 279
No_of_seqs 149 out of 445
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 10:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023628.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023628hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukm_A Potassium channel subfa 15.7 68 0.0023 29.2 2.2 49 142-190 90-141 (280)
2 2fcg_F Cationic, antibacterial 13.2 57 0.002 19.8 0.6 15 113-127 1-15 (26)
3 2rqw_B 24-meric peptide from s 11.1 1.7E+02 0.0057 17.7 2.2 13 53-65 7-19 (26)
4 1oef_A Apolipoprotein E; glyco 10.2 97 0.0033 18.1 1.0 20 107-126 4-23 (26)
5 1a93_B MAX protein, coiled coi 8.9 61 0.0021 20.8 -0.3 9 16-24 13-21 (34)
6 3um7_A Potassium channel subfa 8.3 2.2E+02 0.0076 26.0 3.1 47 142-188 112-161 (309)
7 2p1l_B Beclin 1; apoptosis, au 8.1 93 0.0032 19.4 0.3 7 14-20 23-29 (31)
8 1a92_A Delta antigen; leucine 7.9 1.2E+02 0.0042 20.9 0.8 17 110-126 16-32 (50)
9 3idw_A Actin cytoskeleton-regu 7.4 1.1E+02 0.0039 22.6 0.6 24 103-126 37-60 (72)
10 3o71_B Peptide of deleted in c 7.2 1.6E+02 0.0056 17.8 1.0 14 134-147 2-15 (27)
No 1
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=15.71 E-value=68 Score=29.17 Aligned_cols=49 Identities=16% Similarity=0.375 Sum_probs=34.6
Q ss_pred cCCCchhhHHHHHHHHHHHHhcc---CCCcceEEehhHHHHHHHHHHHHHHH
Q 023628 142 RDWDLWGPFFFIVFLGLTLSWSA---SVKKSEVFAVAFALLAAGAVILTLNV 190 (279)
Q Consensus 142 ~DwDLwGPLlf~L~la~~Lllsg---k~~fg~IFg~vF~i~~~gsi~l~LN~ 190 (279)
.+||+..-+.|+++--.+...+. +...|.+|..+|++++++...++++.
T Consensus 90 ~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~ 141 (280)
T 3ukm_A 90 WNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTA 141 (280)
T ss_dssp CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999887766554432 23457888888888777766655543
No 2
>2fcg_F Cationic, antibacterial protein FALL-39, core peptide; HOST defense peptide, antimicrobial peptide, antimicrobial protein; NMR {Synthetic}
Probab=13.18 E-value=57 Score=19.76 Aligned_cols=15 Identities=27% Similarity=0.538 Sum_probs=11.9
Q ss_pred hhccHHHHHhhccee
Q 023628 113 VKRDLSRIVSNLKLV 127 (279)
Q Consensus 113 LgiD~~~I~~Kl~~V 127 (279)
+|.+++.|++|+|.-
T Consensus 1 ig~~~kkIgQkIkdF 15 (26)
T 2fcg_F 1 IGKEFKRIVQRIKDF 15 (26)
T ss_dssp CCCSHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 467889999998863
No 3
>2rqw_B 24-meric peptide from serine/threonine-protein KI STE20; BEM1P, STE20P, SH3CI, PRR, cytoplasm, cytoskeleton, SH3 DOMA cycle; NMR {Saccharomyces cerevisiae}
Probab=11.07 E-value=1.7e+02 Score=17.68 Aligned_cols=13 Identities=46% Similarity=0.874 Sum_probs=6.7
Q ss_pred CCCCCCCCCCCCC
Q 023628 53 PFIQSNIPPPPPT 65 (279)
Q Consensus 53 ~~~~~~~~~~~~~ 65 (279)
-|+++++-|.||.
T Consensus 7 KFiPsRPAPKPP~ 19 (26)
T 2rqw_B 7 KFIPSRPAPKPPS 19 (26)
T ss_dssp SSCCSSCCCCCSS
T ss_pred ccccCCCCCCCCC
Confidence 3555555555543
No 4
>1oef_A Apolipoprotein E; glycoprotein, plasma, lipid transport, HDL, VLDL, chylomicron, sialic acid, heparin-binding; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=10.20 E-value=97 Score=18.06 Aligned_cols=20 Identities=20% Similarity=0.509 Sum_probs=17.0
Q ss_pred cchhhHhhccHHHHHhhcce
Q 023628 107 EPVWDTVKRDLSRIVSNLKL 126 (279)
Q Consensus 107 EPlleeLgiD~~~I~~Kl~~ 126 (279)
+|.-|+++..+..|+++++.
T Consensus 4 ~P~~e~ik~q~~~i~e~i~~ 23 (26)
T 1oef_A 4 EPLVEDMQRQWAGLVEKVQA 23 (26)
T ss_dssp TTHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHh
Confidence 57889999999999998764
No 5
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=8.95 E-value=61 Score=20.83 Aligned_cols=9 Identities=44% Similarity=0.863 Sum_probs=7.3
Q ss_pred CCCHHHHHH
Q 023628 16 QSDIDEIEN 24 (279)
Q Consensus 16 ~~~~~~~~~ 24 (279)
|.||||++.
T Consensus 13 qqDIddlkr 21 (34)
T 1a93_B 13 QQDIDDLKR 21 (34)
T ss_dssp HHHHHHHHH
T ss_pred HhhHHHHHH
Confidence 789999874
No 6
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=8.26 E-value=2.2e+02 Score=26.02 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=30.6
Q ss_pred cCCCchhhHHHHHHHHHHHHhcc---CCCcceEEehhHHHHHHHHHHHHH
Q 023628 142 RDWDLWGPFFFIVFLGLTLSWSA---SVKKSEVFAVAFALLAAGAVILTL 188 (279)
Q Consensus 142 ~DwDLwGPLlf~L~la~~Lllsg---k~~fg~IFg~vF~i~~~gsi~l~L 188 (279)
.+||+.+-+.|+++--.+...+. +...|.+|+.+|+++++..+.+.+
T Consensus 112 ~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~ 161 (309)
T 3um7_A 112 SAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILL 161 (309)
T ss_dssp -CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 57999999999887555444322 223578888877776666554433
No 7
>2p1l_B Beclin 1; apoptosis, autophagy, BH3 domain, BCL; 2.50A {Homo sapiens} PDB: 3dvu_C 2pon_A
Probab=8.08 E-value=93 Score=19.35 Aligned_cols=7 Identities=57% Similarity=0.919 Sum_probs=1.5
Q ss_pred CCCCCHH
Q 023628 14 SSQSDID 20 (279)
Q Consensus 14 ~~~~~~~ 20 (279)
|+++|||
T Consensus 23 S~~sdID 29 (31)
T 2p1l_B 23 SGQTDVD 29 (31)
T ss_dssp TC-----
T ss_pred hCCCcCC
Confidence 6789988
No 8
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=7.89 E-value=1.2e+02 Score=20.90 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.8
Q ss_pred hhHhhccHHHHHhhcce
Q 023628 110 WDTVKRDLSRIVSNLKL 126 (279)
Q Consensus 110 leeLgiD~~~I~~Kl~~ 126 (279)
+|+|.||++.+.+|++.
T Consensus 16 ~eeler~lrk~kk~iKk 32 (50)
T 1a92_A 16 LEELERDLRKLKKKIKK 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 58999999999998875
No 9
>3idw_A Actin cytoskeleton-regulatory complex protein SLA; clathrin adaptor, endocytosis, SAM domain, yeast, actin-BIND membrane, endosome; 1.85A {Saccharomyces cerevisiae}
Probab=7.41 E-value=1.1e+02 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred CCCCcchhhHhhccHHHHHhhcce
Q 023628 103 NTLTEPVWDTVKRDLSRIVSNLKL 126 (279)
Q Consensus 103 ~tLDEPlleeLgiD~~~I~~Kl~~ 126 (279)
+.||+.+|.|||+...+|.+=+|+
T Consensus 37 ~Dl~~~~Lr~LGi~eGDIIrVmk~ 60 (72)
T 3idw_A 37 PDINNSMLRTLGLREGDIVRVMKH 60 (72)
T ss_dssp GGCCHHHHHHTTCCHHHHHHHHHH
T ss_pred hhCCHHHHHHcCCchhhHHHHHHH
No 10
>3o71_B Peptide of deleted in colorectal cancer; protein-peptide complex, kinase, DCC, transferase-protein BI complex; 1.95A {Rattus norvegicus}
Probab=7.15 E-value=1.6e+02 Score=17.78 Aligned_cols=14 Identities=50% Similarity=0.814 Sum_probs=0.0
Q ss_pred CCCCCCcccCCCch
Q 023628 134 REDPGKALRDWDLW 147 (279)
Q Consensus 134 r~~~~~~l~DwDLw 147 (279)
++...+.++-+|||
T Consensus 2 ~K~~~kDlkppdlw 15 (27)
T 3o71_B 2 RKGSQKDLRPPDLW 15 (27)
T ss_pred CcCccCCCCCccee
Done!