Query 023628
Match_columns 279
No_of_seqs 149 out of 445
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 10:04:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023628.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023628hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 17.7 26 0.0019 19.7 1.3 14 263-276 6-19 (26)
2 d1itza3 c.48.1.1 (A:540-675) T 13.7 39 0.0028 24.9 1.9 32 93-126 104-135 (136)
3 d1r9ja3 c.48.1.1 (A:527-669) T 8.8 43 0.0031 25.4 0.6 32 95-128 96-127 (143)
4 d1p9ga_ g.3.1.1 (A:) Antifunga 7.8 47 0.0034 20.1 0.3 9 201-209 15-23 (41)
5 d2nsfa2 d.106.1.2 (A:161-240) 7.3 62 0.0045 22.6 0.9 20 106-125 2-21 (80)
6 d2r8oa3 c.48.1.1 (A:528-663) T 6.8 66 0.0048 23.3 0.9 30 96-127 106-135 (136)
7 d1gpua3 c.48.1.1 (A:535-680) T 6.6 62 0.0045 24.4 0.6 32 95-128 99-130 (146)
8 d2nr5a1 a.25.6.1 (A:1-64) Hypo 6.5 85 0.0062 20.4 1.2 15 13-27 34-48 (64)
9 d3e99a1 d.17.4.4 (A:1-163) Ben 4.8 1.5E+02 0.011 20.7 1.9 11 17-27 4-14 (163)
10 d1v54e_ a.118.11.1 (E:) Cytoch 4.5 92 0.0067 22.8 0.4 11 107-117 86-96 (105)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=17.70 E-value=26 Score=19.66 Aligned_cols=14 Identities=14% Similarity=0.401 Sum_probs=10.6
Q ss_pred hHHHHHHHHhhhee
Q 023628 263 PVFLMYVSVGFLII 276 (279)
Q Consensus 263 Pi~LfY~~fa~LvI 276 (279)
-+.+|+.+|++|+.
T Consensus 6 aiw~fw~ffalli~ 19 (26)
T d1rzhh2 6 AIYSFWIFLAGLIY 19 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888888764
No 2
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]}
Probab=13.66 E-value=39 Score=24.88 Aligned_cols=32 Identities=16% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCCCCCCCCCCCCCcchhhHhhccHHHHHhhcce
Q 023628 93 IASTGFGSPPNTLTEPVWDTVKRDLSRIVSNLKL 126 (279)
Q Consensus 93 ~~~~gf~~e~~tLDEPlleeLgiD~~~I~~Kl~~ 126 (279)
+..++|+.-.+ -+-|+|.+|+|..+|.+|.|.
T Consensus 104 ~g~d~FG~Sg~--~~~L~~~fglt~~~Iv~~~ks 135 (136)
T d1itza3 104 IGIDKFGASAP--AGTIYKEYGITVESIIAAAKS 135 (136)
T ss_dssp ECCCSCCCSSC--HHHHHHHHTCSHHHHHHHHTT
T ss_pred ccccCccCCCC--HHHHHHHhCCCHHHHHHHHHc
Confidence 44577876654 345999999999999998864
No 3
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]}
Probab=8.76 E-value=43 Score=25.39 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=26.0
Q ss_pred CCCCCCCCCCCCcchhhHhhccHHHHHhhcceee
Q 023628 95 STGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVV 128 (279)
Q Consensus 95 ~~gf~~e~~tLDEPlleeLgiD~~~I~~Kl~~VL 128 (279)
-++||.-.+ -+-|++++|.|.++|.+|.+.++
T Consensus 96 id~FG~Sg~--~~~L~~~fGlt~e~Iv~~~~~ll 127 (143)
T d1r9ja3 96 MSGFGASAP--AGVLYKKFGITVEEVVRTGRELA 127 (143)
T ss_dssp CSSCCCSSC--HHHHHHHTTCSHHHHHHHHHHHH
T ss_pred cCCccccCC--HHHHHHHcCCCHHHHHHHHHHHH
Confidence 466766544 34599999999999999999988
No 4
>d1p9ga_ g.3.1.1 (A:) Antifungal peptide 2 {Hardy rubber tree (Eucommia ulmoides) [TaxId: 4392]}
Probab=7.83 E-value=47 Score=20.06 Aligned_cols=9 Identities=44% Similarity=1.032 Sum_probs=6.7
Q ss_pred eeehhhccc
Q 023628 201 QSLSLLGYC 209 (279)
Q Consensus 201 qsvSVLGYc 209 (279)
-+.|+.|||
T Consensus 15 lccsiygyc 23 (41)
T d1p9ga_ 15 LCCSIYGYC 23 (41)
T ss_dssp CEEETTSCE
T ss_pred eeEEEeeee
Confidence 357888887
No 5
>d2nsfa2 d.106.1.2 (A:161-240) Micothiol-dependent maleylpyruvate isomerase {Corynebacterium glutamicum [TaxId: 1718]}
Probab=7.32 E-value=62 Score=22.65 Aligned_cols=20 Identities=10% Similarity=0.182 Sum_probs=17.0
Q ss_pred CcchhhHhhccHHHHHhhcc
Q 023628 106 TEPVWDTVKRDLSRIVSNLK 125 (279)
Q Consensus 106 DEPlleeLgiD~~~I~~Kl~ 125 (279)
-+++||+|-.|....|+|=.
T Consensus 2 P~~vL~~LladIt~~W~~rg 21 (80)
T d2nsfa2 2 PEVILRTLAAEITQKWTSQG 21 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHhhcC
Confidence 36899999999999999743
No 6
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]}
Probab=6.79 E-value=66 Score=23.30 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCcchhhHhhccHHHHHhhccee
Q 023628 96 TGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLV 127 (279)
Q Consensus 96 ~gf~~e~~tLDEPlleeLgiD~~~I~~Kl~~V 127 (279)
++|+.-.+ -+-|++.+|.|.+.|.++.+..
T Consensus 106 d~Fg~Sg~--~~~L~~~~Gl~~~~I~~~i~~~ 135 (136)
T d2r8oa3 106 TTFGESAP--AELLFEEFGFTVDNVVAKAKEL 135 (136)
T ss_dssp CSCCCSSC--HHHHHHHTTCSHHHHHHHHHHH
T ss_pred ccCCCCCC--HHHHHHHcCCCHHHHHHHHHhh
Confidence 56765433 3449999999999999988754
No 7
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.60 E-value=62 Score=24.43 Aligned_cols=32 Identities=9% Similarity=0.149 Sum_probs=25.5
Q ss_pred CCCCCCCCCCCCcchhhHhhccHHHHHhhcceee
Q 023628 95 STGFGSPPNTLTEPVWDTVKRDLSRIVSNLKLVV 128 (279)
Q Consensus 95 ~~gf~~e~~tLDEPlleeLgiD~~~I~~Kl~~VL 128 (279)
-++|+.-.+ -+-|++.+|.|.++|.+|.+.++
T Consensus 99 id~FG~Sg~--~~~L~~~fGlt~~~I~~~v~~~L 130 (146)
T d1gpua3 99 IDRFGASGK--APEVFKFFGFTPEGVAERAQKTI 130 (146)
T ss_dssp CCSCCCCSC--HHHHHHHTTCSHHHHHHHHHHHH
T ss_pred cccCCCCCC--HHHHHHHhCCCHHHHHHHHHHHH
Confidence 366766543 34599999999999999999988
No 8
>d2nr5a1 a.25.6.1 (A:1-64) Hypothetical protein SO2669 {Shewanella oneidensis [TaxId: 70863]}
Probab=6.47 E-value=85 Score=20.42 Aligned_cols=15 Identities=40% Similarity=0.541 Sum_probs=8.0
Q ss_pred CCCCCCHHHHHHHhh
Q 023628 13 ASSQSDIDEIENLIN 27 (279)
Q Consensus 13 ~~~~~~~~~~~~~~~ 27 (279)
+|..|||.|.|--.|
T Consensus 34 ssdssdmqeveiwtn 48 (64)
T d2nr5a1 34 SSDSSDMQEVEIWTN 48 (64)
T ss_dssp C----HHHHHHHHHH
T ss_pred CCcchhhHHHHHHHH
Confidence 445899999886544
No 9
>d3e99a1 d.17.4.4 (A:1-163) Benzoate 1,2-dioxygenase beta subunit BenB {Burkholderia mallei [TaxId: 13373]}
Probab=4.81 E-value=1.5e+02 Score=20.74 Aligned_cols=11 Identities=18% Similarity=0.513 Sum_probs=5.6
Q ss_pred CCHHHHHHHhh
Q 023628 17 SDIDEIENLIN 27 (279)
Q Consensus 17 ~~~~~~~~~~~ 27 (279)
-|+.|||+|+.
T Consensus 4 ~D~~eI~~ll~ 14 (163)
T d3e99a1 4 IDLADIQAFLY 14 (163)
T ss_dssp CCHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 35555555544
No 10
>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.53 E-value=92 Score=22.78 Aligned_cols=11 Identities=9% Similarity=0.211 Sum_probs=8.5
Q ss_pred cchhhHhhccH
Q 023628 107 EPVWDTVKRDL 117 (279)
Q Consensus 107 EPlleeLgiD~ 117 (279)
+|+++||||+.
T Consensus 86 kptl~ELGI~t 96 (105)
T d1v54e_ 86 RPTLNELGIST 96 (105)
T ss_dssp HHHHHHHTCCC
T ss_pred hhHHHHhCCCC
Confidence 37888888874
Done!