Query 023629
Match_columns 279
No_of_seqs 287 out of 1581
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 05:28:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1318 Helix loop helix trans 99.6 4.5E-15 9.8E-20 140.9 11.6 128 1-139 158-295 (411)
2 PF00010 HLH: Helix-loop-helix 99.4 2.3E-13 4.9E-18 95.2 5.4 49 82-130 2-55 (55)
3 cd00083 HLH Helix-loop-helix d 99.4 3E-13 6.4E-18 95.6 6.0 55 80-134 3-60 (60)
4 cd04897 ACT_ACR_3 ACT domain-c 99.4 1.5E-12 3.2E-17 97.0 9.5 71 182-253 4-74 (75)
5 smart00353 HLH helix loop heli 99.4 1.6E-12 3.4E-17 89.9 6.2 49 86-134 1-52 (53)
6 cd04895 ACT_ACR_1 ACT domain-c 99.3 1.4E-11 3.1E-16 91.0 8.7 65 182-247 4-68 (72)
7 cd04896 ACT_ACR-like_3 ACT dom 99.3 2E-11 4.2E-16 90.9 9.2 70 182-253 3-74 (75)
8 cd04900 ACT_UUR-like_1 ACT dom 99.1 1.3E-09 2.8E-14 80.3 9.7 69 181-250 3-72 (73)
9 cd04927 ACT_ACR-like_2 Second 99.0 1.8E-09 3.9E-14 80.5 9.7 70 182-253 3-73 (76)
10 KOG1319 bHLHZip transcription 99.0 4.6E-10 1E-14 95.7 6.5 63 78-140 59-128 (229)
11 cd04925 ACT_ACR_2 ACT domain-c 99.0 5.4E-09 1.2E-13 77.4 9.9 70 182-252 3-73 (74)
12 KOG4304 Transcriptional repres 98.8 3.7E-09 8E-14 95.7 4.8 58 78-135 29-94 (250)
13 PRK05007 PII uridylyl-transfer 98.6 1.4E-07 3E-12 99.3 10.2 73 179-253 808-880 (884)
14 cd04928 ACT_TyrKc Uncharacteri 98.6 3.6E-07 7.9E-12 66.8 8.9 64 181-251 3-67 (68)
15 KOG3561 Aryl-hydrocarbon recep 98.6 5.8E-08 1.3E-12 99.6 5.5 58 75-132 14-75 (803)
16 PRK01759 glnD PII uridylyl-tra 98.6 2.1E-07 4.5E-12 97.7 9.6 71 179-251 783-853 (854)
17 cd04899 ACT_ACR-UUR-like_2 C-t 98.6 6.3E-07 1.4E-11 64.6 9.4 67 182-250 3-69 (70)
18 cd04926 ACT_ACR_4 C-terminal 98.6 5.3E-07 1.2E-11 66.2 8.7 50 181-230 3-52 (72)
19 PRK00275 glnD PII uridylyl-tra 98.5 6.7E-07 1.5E-11 94.3 12.1 78 178-256 813-890 (895)
20 PRK04374 PII uridylyl-transfer 98.5 8.4E-07 1.8E-11 93.2 11.1 73 178-252 795-867 (869)
21 PRK03059 PII uridylyl-transfer 98.2 5.2E-06 1.1E-10 87.3 10.7 71 178-252 785-855 (856)
22 PRK05092 PII uridylyl-transfer 98.2 9.2E-06 2E-10 86.2 12.0 75 179-254 843-917 (931)
23 PRK03381 PII uridylyl-transfer 98.2 6.3E-06 1.4E-10 85.8 10.6 66 179-247 707-772 (774)
24 COG2844 GlnD UTP:GlnB (protein 98.1 7E-06 1.5E-10 84.1 8.3 65 182-252 794-858 (867)
25 cd04873 ACT_UUR-ACR-like ACT d 98.1 3.2E-05 7E-10 55.1 9.4 67 182-250 3-69 (70)
26 TIGR01693 UTase_glnD [Protein- 98.1 2.7E-05 5.8E-10 82.0 12.3 77 178-255 667-744 (850)
27 TIGR01693 UTase_glnD [Protein- 98.1 1.5E-05 3.2E-10 83.9 10.1 71 179-251 779-849 (850)
28 KOG0561 bHLH transcription fac 98.1 6.2E-06 1.3E-10 75.5 6.1 57 80-136 59-117 (373)
29 PRK01759 glnD PII uridylyl-tra 98.1 2.7E-05 5.8E-10 82.0 11.2 85 169-255 667-752 (854)
30 PRK05007 PII uridylyl-transfer 98.0 6.6E-05 1.4E-09 79.3 12.7 76 178-255 700-776 (884)
31 KOG2483 Upstream transcription 97.9 3E-05 6.5E-10 69.5 6.6 59 78-136 56-117 (232)
32 KOG2588 Predicted DNA-binding 97.9 6E-06 1.3E-10 85.4 2.3 60 79-138 274-334 (953)
33 PRK03381 PII uridylyl-transfer 97.8 0.00018 3.9E-09 75.1 10.9 70 179-253 599-668 (774)
34 PRK00275 glnD PII uridylyl-tra 97.7 0.00016 3.4E-09 76.6 10.3 76 179-254 704-780 (895)
35 PLN03217 transcription factor 97.7 9.1E-05 2E-09 55.8 5.6 48 94-141 20-73 (93)
36 PRK05092 PII uridylyl-transfer 97.7 0.00028 6.2E-09 75.0 11.3 74 179-253 732-806 (931)
37 KOG4029 Transcription factor H 97.7 4.3E-05 9.3E-10 68.4 4.2 61 78-138 106-170 (228)
38 PRK03059 PII uridylyl-transfer 97.6 0.00031 6.8E-09 74.0 10.7 76 178-255 677-753 (856)
39 PF13740 ACT_6: ACT domain; PD 97.6 0.001 2.2E-08 49.2 9.6 64 182-253 5-68 (76)
40 PF01842 ACT: ACT domain; Int 97.5 0.00053 1.2E-08 48.1 7.7 36 182-217 3-38 (66)
41 PRK04374 PII uridylyl-transfer 97.4 0.00099 2.2E-08 70.4 11.0 73 178-254 689-762 (869)
42 cd04870 ACT_PSP_1 CT domains f 97.3 0.0022 4.7E-08 47.1 9.1 65 182-253 2-66 (75)
43 cd04893 ACT_GcvR_1 ACT domains 97.3 0.0029 6.4E-08 46.8 9.8 64 182-253 4-67 (77)
44 PF13291 ACT_4: ACT domain; PD 97.3 0.0015 3.1E-08 48.4 8.1 54 176-229 3-58 (80)
45 KOG3960 Myogenic helix-loop-he 97.3 0.00071 1.5E-08 60.7 6.8 60 81-140 118-179 (284)
46 cd04872 ACT_1ZPV ACT domain pr 97.1 0.0028 6E-08 48.0 7.9 67 182-254 4-70 (88)
47 cd04869 ACT_GcvR_2 ACT domains 97.1 0.0061 1.3E-07 44.9 9.6 65 182-253 2-72 (81)
48 cd04894 ACT_ACR-like_1 ACT dom 97.1 0.0025 5.5E-08 45.6 6.8 65 182-250 3-67 (69)
49 PRK00194 hypothetical protein; 97.0 0.0056 1.2E-07 46.3 8.2 68 181-254 5-72 (90)
50 cd04875 ACT_F4HF-DF N-terminal 96.8 0.013 2.9E-07 42.6 9.1 66 182-253 2-69 (74)
51 COG2844 GlnD UTP:GlnB (protein 96.8 0.009 1.9E-07 61.9 10.8 83 171-257 678-761 (867)
52 cd04887 ACT_MalLac-Enz ACT_Mal 96.7 0.013 2.7E-07 42.3 8.2 47 183-229 3-50 (74)
53 KOG3910 Helix loop helix trans 96.5 0.0029 6.3E-08 61.7 4.3 62 75-136 520-585 (632)
54 cd04886 ACT_ThrD-II-like C-ter 96.4 0.028 6E-07 39.5 7.9 45 183-227 2-51 (73)
55 cd04888 ACT_PheB-BS C-terminal 96.4 0.021 4.5E-07 41.3 7.3 49 181-229 2-51 (76)
56 cd04877 ACT_TyrR N-terminal AC 95.6 0.048 1E-06 39.7 6.4 34 182-215 3-36 (74)
57 PRK11589 gcvR glycine cleavage 95.3 0.06 1.3E-06 47.0 6.8 62 182-251 11-72 (190)
58 KOG4447 Transcription factor T 95.1 0.011 2.5E-07 49.4 1.8 54 81-134 78-133 (173)
59 PRK06027 purU formyltetrahydro 95.1 0.17 3.7E-06 46.9 9.6 69 182-256 9-79 (286)
60 cd04880 ACT_AAAH-PDT-like ACT 95.0 0.26 5.6E-06 35.7 8.5 46 184-229 4-50 (75)
61 cd04876 ACT_RelA-SpoT ACT dom 94.9 0.18 3.9E-06 34.0 7.3 44 183-226 2-46 (71)
62 cd04881 ACT_HSDH-Hom ACT_HSDH_ 94.9 0.17 3.6E-06 36.0 7.3 43 183-225 4-48 (79)
63 PRK04435 hypothetical protein; 94.7 0.2 4.4E-06 41.8 8.2 50 180-229 70-120 (147)
64 TIGR00655 PurU formyltetrahydr 94.7 0.26 5.6E-06 45.6 9.6 66 182-253 3-71 (280)
65 cd04889 ACT_PDH-BS-like C-term 94.2 0.21 4.6E-06 34.0 6.1 43 183-225 2-45 (56)
66 cd04874 ACT_Af1403 N-terminal 94.2 0.28 6E-06 34.3 6.9 34 182-215 3-36 (72)
67 PRK07334 threonine dehydratase 94.0 0.31 6.7E-06 47.1 9.0 55 175-229 322-381 (403)
68 cd04909 ACT_PDH-BS C-terminal 94.0 0.41 9E-06 33.8 7.5 34 182-215 4-37 (69)
69 cd04879 ACT_3PGDH-like ACT_3PG 93.9 0.23 5E-06 34.4 6.1 44 182-225 2-47 (71)
70 cd04908 ACT_Bt0572_1 N-termina 93.9 0.29 6.3E-06 34.6 6.5 45 181-227 3-47 (66)
71 PRK13010 purU formyltetrahydro 93.8 0.3 6.6E-06 45.4 8.3 70 182-256 12-83 (289)
72 PRK08577 hypothetical protein; 93.8 0.6 1.3E-05 38.2 9.1 50 179-228 56-107 (136)
73 cd04905 ACT_CM-PDT C-terminal 93.7 0.7 1.5E-05 34.0 8.7 46 184-229 6-52 (80)
74 PRK13011 formyltetrahydrofolat 93.7 0.51 1.1E-05 43.8 9.6 67 182-255 10-78 (286)
75 cd04903 ACT_LSD C-terminal ACT 93.4 0.57 1.2E-05 32.4 7.5 32 183-214 3-34 (71)
76 cd04883 ACT_AcuB C-terminal AC 93.2 0.95 2E-05 32.1 8.3 46 181-226 3-50 (72)
77 cd04884 ACT_CBS C-terminal ACT 93.1 0.56 1.2E-05 33.6 7.1 34 182-215 2-35 (72)
78 cd02116 ACT ACT domains are co 93.1 0.46 1E-05 30.1 6.1 34 183-216 2-35 (60)
79 KOG3560 Aryl-hydrocarbon recep 93.0 0.074 1.6E-06 52.9 2.9 39 89-127 33-75 (712)
80 COG3830 ACT domain-containing 92.1 0.29 6.4E-06 37.6 4.5 68 182-255 6-73 (90)
81 cd04878 ACT_AHAS N-terminal AC 92.0 1 2.2E-05 31.1 7.2 43 183-225 4-48 (72)
82 cd04882 ACT_Bt0572_2 C-termina 91.6 0.63 1.4E-05 32.1 5.7 43 183-225 3-47 (65)
83 PRK11589 gcvR glycine cleavage 91.6 1.2 2.6E-05 38.8 8.6 69 180-255 96-170 (190)
84 KOG3558 Hypoxia-inducible fact 91.6 0.15 3.2E-06 52.1 3.2 42 86-127 51-96 (768)
85 PRK10872 relA (p)ppGpp synthet 91.5 1.1 2.4E-05 46.8 9.5 61 169-229 653-718 (743)
86 PRK00227 glnD PII uridylyl-tra 91.5 0.28 6.1E-06 50.9 5.1 58 182-252 634-691 (693)
87 KOG3559 Transcriptional regula 91.3 0.2 4.3E-06 48.3 3.5 53 87-139 7-63 (598)
88 PRK00227 glnD PII uridylyl-tra 91.1 1.1 2.3E-05 46.7 8.8 67 184-256 552-618 (693)
89 cd04901 ACT_3PGDH C-terminal A 90.4 0.25 5.5E-06 34.7 2.6 43 183-225 3-45 (69)
90 cd04931 ACT_PAH ACT domain of 90.1 2.4 5.3E-05 32.4 8.0 46 184-229 19-65 (90)
91 TIGR00119 acolac_sm acetolacta 89.5 1.6 3.5E-05 37.0 7.2 45 182-226 4-50 (157)
92 COG4492 PheB ACT domain-contai 89.2 2.7 5.8E-05 34.7 7.9 53 176-228 69-122 (150)
93 PRK11092 bifunctional (p)ppGpp 89.2 2.2 4.8E-05 44.5 9.4 53 177-229 624-677 (702)
94 cd04904 ACT_AAAH ACT domain of 89.1 3.3 7.1E-05 30.1 7.8 46 184-229 5-51 (74)
95 TIGR00691 spoT_relA (p)ppGpp s 89.1 2.3 5E-05 44.2 9.4 53 177-229 608-661 (683)
96 PRK06737 acetolactate synthase 89.0 1.6 3.5E-05 32.5 6.1 36 182-217 5-40 (76)
97 PRK11895 ilvH acetolactate syn 88.8 2 4.4E-05 36.5 7.4 44 182-225 5-50 (161)
98 KOG3898 Transcription factor N 88.8 0.27 5.8E-06 44.9 2.1 54 78-131 69-125 (254)
99 cd04929 ACT_TPH ACT domain of 88.7 4.6 0.0001 29.6 8.4 46 184-229 5-51 (74)
100 PRK11152 ilvM acetolactate syn 88.4 2.3 5E-05 31.6 6.5 44 182-225 6-51 (76)
101 KOG4395 Transcription factor A 88.3 0.83 1.8E-05 41.4 4.8 55 80-134 173-230 (285)
102 cd04902 ACT_3PGDH-xct C-termin 87.8 1.8 3.8E-05 30.5 5.6 42 184-225 4-47 (73)
103 CHL00100 ilvH acetohydroxyacid 87.2 3.2 6.9E-05 35.8 7.6 66 182-255 5-72 (174)
104 cd04885 ACT_ThrD-I Tandem C-te 85.9 4.7 0.0001 28.6 6.9 32 184-216 3-34 (68)
105 cd04898 ACT_ACR-like_4 ACT dom 85.7 2 4.3E-05 32.0 4.8 44 182-225 3-48 (77)
106 PRK13562 acetolactate synthase 85.6 2.9 6.4E-05 31.7 5.8 47 182-228 5-51 (84)
107 PF13710 ACT_5: ACT domain; PD 84.4 2.8 6E-05 29.8 5.0 38 188-225 1-40 (63)
108 COG0788 PurU Formyltetrahydrof 83.9 5.3 0.00011 36.8 7.7 71 182-256 10-80 (287)
109 cd04930 ACT_TH ACT domain of t 83.7 7.2 0.00016 31.2 7.7 46 184-229 46-92 (115)
110 PRK11899 prephenate dehydratas 81.5 8.6 0.00019 35.6 8.4 47 184-230 199-246 (279)
111 COG2716 GcvR Glycine cleavage 80.9 1.6 3.4E-05 37.6 3.0 46 182-227 8-53 (176)
112 PRK08178 acetolactate synthase 80.8 6.4 0.00014 30.7 6.1 44 182-225 11-54 (96)
113 cd04906 ACT_ThrD-I_1 First of 78.7 18 0.00039 26.8 8.0 44 184-229 6-50 (85)
114 COG0317 SpoT Guanosine polypho 77.7 11 0.00024 39.3 8.5 53 176-228 624-677 (701)
115 PRK06382 threonine dehydratase 77.6 12 0.00025 36.3 8.3 50 179-228 330-384 (406)
116 TIGR01127 ilvA_1Cterm threonin 75.9 17 0.00037 34.6 8.9 37 177-213 303-339 (380)
117 PF05088 Bac_GDH: Bacterial NA 75.5 16 0.00034 41.5 9.5 70 180-254 490-564 (1528)
118 COG4747 ACT domain-containing 75.1 7.9 0.00017 31.5 5.3 45 181-225 5-49 (142)
119 COG0077 PheA Prephenate dehydr 70.0 22 0.00047 33.0 7.7 47 184-230 199-246 (279)
120 PRK10622 pheA bifunctional cho 69.5 25 0.00055 34.0 8.4 47 184-230 302-349 (386)
121 COG1707 ACT domain-containing 67.9 18 0.00038 31.3 6.1 49 182-230 5-53 (218)
122 PRK08198 threonine dehydratase 67.6 35 0.00076 32.8 9.0 36 179-214 327-362 (404)
123 cd04922 ACT_AKi-HSDH-ThrA_2 AC 67.3 36 0.00078 23.1 7.1 27 188-214 13-39 (66)
124 cd04937 ACT_AKi-DapG-BS_2 ACT 67.2 33 0.00071 23.8 6.6 21 188-208 13-33 (64)
125 KOG3582 Mlx interactors and re 64.3 7.5 0.00016 40.2 3.7 62 80-141 650-716 (856)
126 cd04932 ACT_AKiii-LysC-EC_1 AC 63.7 54 0.0012 23.8 8.2 57 186-253 11-67 (75)
127 cd04892 ACT_AK-like_2 ACT doma 62.5 41 0.0009 22.1 6.4 27 188-214 12-38 (65)
128 PLN02317 arogenate dehydratase 59.5 50 0.0011 32.1 8.2 46 184-229 288-348 (382)
129 cd04871 ACT_PSP_2 ACT domains 59.4 14 0.0003 27.7 3.6 62 182-251 2-73 (84)
130 COG2716 GcvR Glycine cleavage 57.4 16 0.00035 31.5 4.0 69 179-250 92-162 (176)
131 PRK11898 prephenate dehydratas 56.8 46 0.00099 30.7 7.3 47 184-230 201-249 (283)
132 PF13840 ACT_7: ACT domain ; P 56.0 23 0.0005 25.0 4.1 24 188-211 19-42 (65)
133 COG4747 ACT domain-containing 55.8 48 0.001 27.0 6.2 25 184-208 74-98 (142)
134 PRK08526 threonine dehydratase 55.2 70 0.0015 31.0 8.6 37 180-216 327-363 (403)
135 cd04913 ACT_AKii-LysC-BS-like_ 51.2 56 0.0012 22.3 5.6 26 186-211 9-34 (75)
136 PF09383 NIL: NIL domain; Int 50.9 90 0.0019 22.3 9.3 52 178-230 3-55 (76)
137 PRK10820 DNA-binding transcrip 50.7 24 0.00053 35.3 4.8 36 181-216 2-37 (520)
138 COG3978 Acetolactate synthase 49.2 1.1E+02 0.0025 23.1 7.2 46 181-226 5-52 (86)
139 cd04918 ACT_AK1-AT_2 ACT domai 47.3 91 0.002 21.6 6.1 31 188-218 12-42 (65)
140 KOG4447 Transcription factor T 45.8 17 0.00037 30.7 2.3 44 88-131 29-74 (173)
141 cd04915 ACT_AK-Ectoine_2 ACT d 45.6 84 0.0018 22.0 5.7 27 189-215 14-40 (66)
142 COG2061 ACT-domain-containing 45.3 1.7E+02 0.0037 24.9 8.2 47 179-225 5-54 (170)
143 KOG3582 Mlx interactors and re 45.3 6.6 0.00014 40.6 -0.2 61 77-140 783-848 (856)
144 cd04868 ACT_AK-like ACT domain 43.8 84 0.0018 20.0 5.7 26 188-213 12-37 (60)
145 PRK08818 prephenate dehydrogen 41.8 99 0.0021 29.8 7.2 42 187-229 304-345 (370)
146 cd04890 ACT_AK-like_1 ACT doma 40.7 98 0.0021 20.8 5.4 24 188-211 12-35 (62)
147 cd04916 ACT_AKiii-YclM-BS_2 AC 39.9 1.1E+02 0.0025 20.4 7.1 26 188-213 13-38 (66)
148 PRK11790 D-3-phosphoglycerate 39.3 68 0.0015 31.2 5.8 44 182-225 341-384 (409)
149 TIGR00719 sda_beta L-serine de 38.7 2E+02 0.0044 25.1 8.2 42 184-225 153-196 (208)
150 cd04919 ACT_AK-Hom3_2 ACT doma 37.1 1.1E+02 0.0025 20.6 5.3 27 188-214 13-39 (66)
151 TIGR01270 Trp_5_monoox tryptop 37.0 1.3E+02 0.0028 30.1 7.2 46 184-229 36-83 (464)
152 PF02344 Myc-LZ: Myc leucine z 36.9 41 0.00089 20.8 2.4 17 89-105 13-29 (32)
153 PRK14637 hypothetical protein; 36.9 1.2E+02 0.0025 25.5 6.1 62 187-253 5-67 (151)
154 PRK06349 homoserine dehydrogen 36.1 2E+02 0.0043 28.0 8.5 36 177-214 348-383 (426)
155 TIGR01268 Phe4hydrox_tetr phen 35.9 1.5E+02 0.0032 29.4 7.5 46 184-229 21-67 (436)
156 cd04891 ACT_AK-LysC-DapG-like_ 33.9 1.3E+02 0.0028 19.3 6.0 27 187-213 9-35 (61)
157 cd04921 ACT_AKi-HSDH-ThrA-like 33.2 1.8E+02 0.0038 20.6 6.7 27 187-213 12-38 (80)
158 cd04912 ACT_AKiii-LysC-EC-like 32.8 1.8E+02 0.004 20.7 7.1 25 187-211 12-36 (75)
159 cd04924 ACT_AK-Arch_2 ACT doma 32.7 1.5E+02 0.0033 19.7 7.1 26 188-213 13-38 (66)
160 PF02120 Flg_hook: Flagellar h 32.0 2E+02 0.0042 20.8 6.1 46 167-214 27-78 (85)
161 PRK14630 hypothetical protein; 31.0 1.1E+02 0.0023 25.5 4.9 55 194-253 12-67 (143)
162 cd04935 ACT_AKiii-DAPDC_1 ACT 31.0 2.1E+02 0.0045 20.7 6.8 25 187-211 12-36 (75)
163 PRK15385 magnesium transport p 30.7 4E+02 0.0087 23.9 9.0 39 178-216 141-181 (225)
164 cd04923 ACT_AK-LysC-DapG-like_ 30.5 1.6E+02 0.0035 19.3 5.6 25 188-212 12-36 (63)
165 PRK12787 fliX flagellar assemb 29.7 79 0.0017 26.3 3.8 49 85-141 61-113 (138)
166 PF10465 Inhibitor_I24: PinA p 28.1 90 0.002 25.4 3.8 37 95-133 103-139 (140)
167 COG3074 Uncharacterized protei 27.9 79 0.0017 23.3 3.1 24 118-141 12-35 (79)
168 cd04936 ACT_AKii-LysC-BS-like_ 25.8 2E+02 0.0043 18.8 5.7 26 187-212 11-36 (63)
169 cd04920 ACT_AKiii-DAPDC_2 ACT 25.5 2.3E+02 0.005 19.5 6.5 23 188-210 12-34 (63)
170 KOG2663 Acetolactate synthase, 25.0 1.3E+02 0.0027 27.8 4.6 46 184-229 82-129 (309)
171 COG3283 TyrR Transcriptional r 24.2 93 0.002 30.5 3.7 33 181-213 2-34 (511)
172 cd04933 ACT_AK1-AT_1 ACT domai 24.0 3E+02 0.0064 20.2 8.1 25 187-211 12-36 (78)
173 PTZ00324 glutamate dehydrogena 23.4 4E+02 0.0088 29.3 8.6 46 185-230 239-285 (1002)
174 PRK13702 replication protein; 23.2 1.8E+02 0.0038 22.2 4.3 30 81-110 20-51 (85)
175 cd04934 ACT_AK-Hom3_1 CT domai 22.8 3E+02 0.0064 19.8 6.5 24 188-211 13-36 (73)
176 PRK06545 prephenate dehydrogen 22.5 2.1E+02 0.0045 27.1 5.9 48 182-229 293-340 (359)
177 PRK13581 D-3-phosphoglycerate 22.4 2.2E+02 0.0048 28.6 6.3 42 184-225 457-500 (526)
178 PF06005 DUF904: Protein of un 21.9 1.2E+02 0.0026 22.2 3.2 22 119-140 13-34 (72)
179 PRK14633 hypothetical protein; 21.5 4.5E+02 0.0097 21.8 7.0 54 195-253 9-62 (150)
180 PRK08639 threonine dehydratase 20.7 5.4E+02 0.012 24.9 8.4 35 179-213 336-370 (420)
181 PF05088 Bac_GDH: Bacterial NA 20.6 4.6E+02 0.0099 30.3 8.7 29 182-210 20-48 (1528)
182 TIGR02079 THD1 threonine dehyd 20.3 6.9E+02 0.015 24.1 9.1 34 180-213 326-359 (409)
183 PRK14639 hypothetical protein; 20.3 3E+02 0.0065 22.6 5.6 54 196-253 3-56 (140)
184 TIGR01124 ilvA_2Cterm threonin 20.2 6E+02 0.013 25.4 8.8 31 182-214 328-358 (499)
No 1
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=99.60 E-value=4.5e-15 Score=140.89 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=89.8
Q ss_pred CCcccccCCCCC---CccccccCcCCCCCcccCCC--CC-CCCCCCCCCCCCCCCCCcCCCCCCCCCcccCCCCCCccch
Q 023629 1 MENFSHQSATAC---PDQMNYWAANSNFPLTWLQQ--TP-APHVNSSASTSNSNSNSIDHHFHELPYSWSNINPMTQEVA 74 (279)
Q Consensus 1 me~~~~~~~~~~---~~~m~~~~~~~~~~~~~~~q--~~-~p~~~~~s~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (279)
|+.+|+...... +.+|.+..+.+++..++|++ +. +|-.. -++.+++.......++.+ ....++
T Consensus 158 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~---~~~~s~~s~~~~~~rt~~--------~~~~~~ 226 (411)
T KOG1318|consen 158 LSASFPAQSVGSPAGNGQTANTLTSSGASLNVYPSEGQFNVPMTG---HDSASCPSQLSIGPRTHP--------KTDATA 226 (411)
T ss_pred cccccCccccCCCCcCCcccceeeccchhcccccccCCCCCCCCc---cccccCccccCCCCCCCC--------Ccccch
Confidence 456666653222 23566777777777777753 12 22221 112233333333444444 455677
Q ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCCC----cCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 023629 75 EDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSE----KMDKAALLGSAIEHVKDLKLKAMEVSKT 139 (279)
Q Consensus 75 ~~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~~----k~dkasil~~ai~yik~L~~~~~~l~~~ 139 (279)
..|.+++|.+||++|||||++||++|++|..|||+++ +..|++||..+++||++||+..++..+.
T Consensus 227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~~E~ 295 (411)
T KOG1318|consen 227 LERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRAREL 295 (411)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999764 6679999999999999999988865443
No 2
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.42 E-value=2.3e-13 Score=95.20 Aligned_cols=49 Identities=43% Similarity=0.745 Sum_probs=46.1
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhcCCCC-----CcCchhhHHHHHHHHHHHHH
Q 023629 82 SKSHSQAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLGSAIEHVKDLK 130 (279)
Q Consensus 82 ~~~h~~~Er~RR~~in~~~~~L~~lvP~~-----~k~dkasil~~ai~yik~L~ 130 (279)
+..|+..||+||++||+.|.+|+.+||.. .|++|++||..||+||++||
T Consensus 2 R~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 2 RQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 56899999999999999999999999975 68999999999999999997
No 3
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.42 E-value=3e-13 Score=95.65 Aligned_cols=55 Identities=35% Similarity=0.572 Sum_probs=50.8
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCchhhHHHHHHHHHHHHHHHHH
Q 023629 80 AVSKSHSQAEKRRRDRINAQLATLRKLIPKS---EKMDKAALLGSAIEHVKDLKLKAM 134 (279)
Q Consensus 80 ~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~---~k~dkasil~~ai~yik~L~~~~~ 134 (279)
..+..|+..||+||++||..|..|+.+||.. .|+||++||..||+||+.|+.+++
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~~ 60 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELLQ 60 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4567899999999999999999999999977 799999999999999999998763
No 4
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.42 E-value=1.5e-12 Score=96.97 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=63.3
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
|+|.|.||||||++|.++|.++|+.|.+|.|+|.|+++.++|||+..+|.+........ .|+++|..+|.+
T Consensus 4 veV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~~g~kl~~~~~~~-~l~~~L~~al~~ 74 (75)
T cd04897 4 VTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHKDGRTLSTEGERQ-RVIKCLEAAIER 74 (75)
T ss_pred EEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcCCCCccCCHHHHH-HHHHHHHHHHhc
Confidence 67999999999999999999999999999999999999999999999886665544444 889999998876
No 5
>smart00353 HLH helix loop helix domain.
Probab=99.36 E-value=1.6e-12 Score=89.91 Aligned_cols=49 Identities=39% Similarity=0.615 Sum_probs=45.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCC---CCCcCchhhHHHHHHHHHHHHHHHHH
Q 023629 86 SQAEKRRRDRINAQLATLRKLIP---KSEKMDKAALLGSAIEHVKDLKLKAM 134 (279)
Q Consensus 86 ~~~Er~RR~~in~~~~~L~~lvP---~~~k~dkasil~~ai~yik~L~~~~~ 134 (279)
+..||+||++||+.|..|+++|| ...+++|++||..||+||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999 46799999999999999999999876
No 6
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.30 E-value=1.4e-11 Score=91.02 Aligned_cols=65 Identities=22% Similarity=0.352 Sum_probs=53.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHH
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQAL 247 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL 247 (279)
|+|.+.||||||++|.++|.++||+|..|.|+|.|+++.++|+|...+|.+......+. .|+++|
T Consensus 4 iev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d~~g~kl~d~~~~~-~l~~~L 68 (72)
T cd04895 4 VKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSLIA-YIEKSL 68 (72)
T ss_pred EEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEECCCCCCCCCHHHHH-HHHHHh
Confidence 56999999999999999999999999999999999999999999888764443333333 455544
No 7
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.29 E-value=2e-11 Score=90.93 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=58.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE--eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADIS--SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is--t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
++|.|.||||||++|+++|..+||+|..|.|+ |.|+++.|+|+| ..++.+........ .|+++|.++|.+
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~~~g~kl~d~~~~~-~L~~~L~~~l~~ 74 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-QSDGKKIMDPKKQA-ALCARLREEMVC 74 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-eCCCCccCCHHHHH-HHHHHHHHHhcC
Confidence 56999999999999999999999999999999 999999999999 55554433333334 888898888864
No 8
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.07 E-value=1.3e-09 Score=80.34 Aligned_cols=69 Identities=28% Similarity=0.379 Sum_probs=53.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee-CCEEEEEEEEEecCCCCccccccHHHHHHHHHHHH
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV-GGRIKSILVLCNKDACDHQESVSLSRRLKQALHLA 250 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~a 250 (279)
+|+|+|.+|||||++|+.+|..+||+|+.|.|.|. +|+++++|+|...++.......... .|+++|.++
T Consensus 3 ~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~-~l~~~L~~~ 72 (73)
T cd04900 3 EVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLA-RIREALEDA 72 (73)
T ss_pred EEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHH-HHHHHHHhh
Confidence 46799999999999999999999999999999887 7999999999866553221111222 566666554
No 9
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.05 E-value=1.8e-09 Score=80.47 Aligned_cols=70 Identities=20% Similarity=0.321 Sum_probs=57.2
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe-eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISS-VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist-~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
++|.|.+|||||++++.+|..+||+|++|+|.| .+|+++++|+|...++. .......+.|+++|.++|..
T Consensus 3 ~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~--~~~~~~~~~l~~~L~~~L~~ 73 (76)
T cd04927 3 LKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL--LHTKKRREETYDYLRAVLGD 73 (76)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC--CCCHHHHHHHHHHHHHHHch
Confidence 569999999999999999999999999999996 89999999999766553 11122233788888888764
No 10
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=99.03 E-value=4.6e-10 Score=95.73 Aligned_cols=63 Identities=27% Similarity=0.460 Sum_probs=54.3
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC-------CcCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 78 ATAVSKSHSQAEKRRRDRINAQLATLRKLIPKS-------EKMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 78 ~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~-------~k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
...++..|..+||+||+.||..+..|+.|||.+ .|+.||.||..+|+||.+|+++..+-+++.
T Consensus 59 k~rrr~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~ 128 (229)
T KOG1319|consen 59 KDRRRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEV 128 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577899999999999999999999999953 277899999999999999999887766554
No 11
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.98 E-value=5.4e-09 Score=77.38 Aligned_cols=70 Identities=20% Similarity=0.378 Sum_probs=56.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecC-CCCccccccHHHHHHHHHHHHHh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKD-ACDHQESVSLSRRLKQALHLALS 252 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~-~~~~~~~~~l~~~L~qaL~~aL~ 252 (279)
++|.+.||||||++|..+|..+|++|+.|++.+.++++.++|+|...+ +.+........ .|+++|.++|.
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~-~i~~~L~~~l~ 73 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLA-SIEDRLDNVLR 73 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHH-HHHHHHHHHhc
Confidence 569999999999999999999999999999999999999999998765 43222222233 77788777764
No 12
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.82 E-value=3.7e-09 Score=95.72 Aligned_cols=58 Identities=31% Similarity=0.480 Sum_probs=50.6
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHhcCCC--------CCcCchhhHHHHHHHHHHHHHHHHHH
Q 023629 78 ATAVSKSHSQAEKRRRDRINAQLATLRKLIPK--------SEKMDKAALLGSAIEHVKDLKLKAME 135 (279)
Q Consensus 78 ~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~--------~~k~dkasil~~ai~yik~L~~~~~~ 135 (279)
...++.+|-++||+||+|||..|.+|+.|||. ..|++||.||+.||+|++.|+...+.
T Consensus 29 ~~~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~~ 94 (250)
T KOG4304|consen 29 RQYRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQA 94 (250)
T ss_pred HHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 34566789999999999999999999999992 36889999999999999999976554
No 13
>PRK05007 PII uridylyl-transferase; Provisional
Probab=98.63 E-value=1.4e-07 Score=99.28 Aligned_cols=73 Identities=23% Similarity=0.351 Sum_probs=61.3
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
...|+|.|.||||||++|+++|.++||+|.+|.|+|.|+++.|+|+|+...|.+.. ..... .|+++|..+|..
T Consensus 808 ~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~~~g~~l~-~~~~~-~l~~~L~~~l~~ 880 (884)
T PRK05007 808 RSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILATADRRALN-EELQQ-ELRQRLTEALNP 880 (884)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEcCCCCcCC-HHHHH-HHHHHHHHHHhh
Confidence 34478999999999999999999999999999999999999999999887764433 22233 788888888854
No 14
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.60 E-value=3.6e-07 Score=66.75 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=53.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe-eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHH
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISS-VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLAL 251 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist-~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL 251 (279)
+|.|.|.+|||+|++|..+|..+||+|+.|+|.+ .+|.++++|+|...++ ++. . .|.++|+.+|
T Consensus 3 eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~---~~~---~-~~~~~~~~~~ 67 (68)
T cd04928 3 EITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKR---GET---A-ALGHALQKEI 67 (68)
T ss_pred EEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCc---cch---H-HHHHHHHHhh
Confidence 3568899999999999999999999999999974 6899999999987765 221 2 6777777766
No 15
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.57 E-value=5.8e-08 Score=99.55 Aligned_cols=58 Identities=29% Similarity=0.539 Sum_probs=51.1
Q ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC----CcCchhhHHHHHHHHHHHHHHH
Q 023629 75 EDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKS----EKMDKAALLGSAIEHVKDLKLK 132 (279)
Q Consensus 75 ~~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~----~k~dkasil~~ai~yik~L~~~ 132 (279)
+.|.+.++.+|+.+|||||+++|..|.+|.+|||.+ .|+||.+||.+||.+||.+++.
T Consensus 14 d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 14 DSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 334445588999999999999999999999999954 5999999999999999988874
No 16
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.57 E-value=2.1e-07 Score=97.70 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=59.7
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHH
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLAL 251 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL 251 (279)
...|+|.+.||||||++|+++|.++|++|..|.|+|.|+++.|+|+|+..+|.+.+.... . .|+++|..+|
T Consensus 783 ~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~~~g~~l~~~~~-~-~l~~~L~~~l 853 (854)
T PRK01759 783 QTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTNQQGQALDEEER-K-ALKSRLLSNL 853 (854)
T ss_pred eEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEECCCCCcCChHHH-H-HHHHHHHHHh
Confidence 344789999999999999999999999999999999999999999998877654433222 3 7888888776
No 17
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=6.3e-07 Score=64.57 Aligned_cols=67 Identities=27% Similarity=0.420 Sum_probs=53.3
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHH
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLA 250 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~a 250 (279)
+.|.+.+++|+|.+|+.+|.++++.|.++++.+.++.+.++|++...++.. ....... .|+++|..+
T Consensus 3 l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~-~i~~~l~~~ 69 (70)
T cd04899 3 LELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQE-ALRAALGEA 69 (70)
T ss_pred EEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHH-HHHHHHHhh
Confidence 458999999999999999999999999999999999999999998776633 1111222 566666554
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.55 E-value=5.3e-07 Score=66.23 Aligned_cols=50 Identities=24% Similarity=0.466 Sum_probs=45.8
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCC
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDA 230 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~ 230 (279)
++.|.+.+++|+|++|..+|.++|++|++|.+.+.++.++++|+|...++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~ 52 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANG 52 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCC
Confidence 46688999999999999999999999999999999899999999987655
No 19
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=98.53 E-value=6.7e-07 Score=94.30 Aligned_cols=78 Identities=21% Similarity=0.340 Sum_probs=63.8
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
....|+|++.||||||++|..+|..+||+|+.|.|+|.|++++++|+|...++.+......+. .|+++|..+|.....
T Consensus 813 ~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d~~g~~l~~~~~~~-~l~~~L~~~L~~~~~ 890 (895)
T PRK00275 813 PVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITDADNQPLSDPQLCS-RLQDAICEQLDARNE 890 (895)
T ss_pred CeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEECCCCCCCCCHHHHH-HHHHHHHHHHhcccc
Confidence 345578999999999999999999999999999999999999999999887764433222334 788999998855443
No 20
>PRK04374 PII uridylyl-transferase; Provisional
Probab=98.47 E-value=8.4e-07 Score=93.22 Aligned_cols=73 Identities=22% Similarity=0.312 Sum_probs=60.8
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHh
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALS 252 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~ 252 (279)
....|+|.+.||||||++|..+|..+||+|+.|.|+|.|+++.++|+|...++.+... ... +.|+++|..+|.
T Consensus 795 ~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~~g~~~~~-~~~-~~l~~~L~~~l~ 867 (869)
T PRK04374 795 RRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDEHDRPLSE-SAR-QALRDALCACLD 867 (869)
T ss_pred CeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcCCh-HHH-HHHHHHHHHHhc
Confidence 4456789999999999999999999999999999999999999999998776643222 222 378888888874
No 21
>PRK03059 PII uridylyl-transferase; Provisional
Probab=98.25 E-value=5.2e-06 Score=87.26 Aligned_cols=71 Identities=25% Similarity=0.334 Sum_probs=56.9
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHh
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALS 252 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~ 252 (279)
....|+|.+.||||||++|..+|..+||+|+.|.|+|.|+++.++|+|...+. ....... .|+++|.++|.
T Consensus 785 ~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~~~~---~~~~~~~-~l~~~L~~~L~ 855 (856)
T PRK03059 785 QYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDGSGL---SDNRLQI-QLETELLDALA 855 (856)
T ss_pred CEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcCCCC---CCHHHHH-HHHHHHHHHhc
Confidence 34557899999999999999999999999999999999999999999942221 1222233 78888887764
No 22
>PRK05092 PII uridylyl-transferase; Provisional
Probab=98.23 E-value=9.2e-06 Score=86.21 Aligned_cols=75 Identities=21% Similarity=0.302 Sum_probs=62.4
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
...|+|.+.||||+|++|+.+|.++|++|.+|.|.|.++++.++|+|...++........+. .|+++|..+|...
T Consensus 843 ~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d~~g~~i~~~~~~~-~l~~~L~~~L~~~ 917 (931)
T PRK05092 843 FTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTDLFGLKITNEARQA-AIRRALLAALAEG 917 (931)
T ss_pred eEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeCCCCCcCCCHHHHH-HHHHHHHHHhcCc
Confidence 35578999999999999999999999999999999999999999999877664333222333 7899999999543
No 23
>PRK03381 PII uridylyl-transferase; Provisional
Probab=98.23 E-value=6.3e-06 Score=85.80 Aligned_cols=66 Identities=17% Similarity=0.312 Sum_probs=54.3
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHH
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQAL 247 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL 247 (279)
...|+|.+.||||||++|..+|..+|++|++|.|+|.|++++++|+|...++.+.... .. .|+++|
T Consensus 707 ~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d~~g~~~~~~--~~-~l~~~L 772 (774)
T PRK03381 707 ATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTGAAGGPLADA--RA-AVEQAV 772 (774)
T ss_pred eEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEECCCCCcCchH--HH-HHHHHh
Confidence 3457899999999999999999999999999999999999999999988776433322 22 555554
No 24
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=7e-06 Score=84.08 Aligned_cols=65 Identities=26% Similarity=0.442 Sum_probs=54.1
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALS 252 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~ 252 (279)
+++.+.||||||+.|..+|.+++|+|++|+|+|+|+++.|+|+|.+..+.+. + . ++++.|.+.+.
T Consensus 794 lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~~~~~~l----~-~-~~~q~l~~~ll 858 (867)
T COG2844 794 LEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTDADGQAL----N-A-ELRQSLLQRLL 858 (867)
T ss_pred EEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEeccccccC----C-H-HHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999998876322 1 1 44555555443
No 25
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=98.12 E-value=3.2e-05 Score=55.10 Aligned_cols=67 Identities=33% Similarity=0.421 Sum_probs=50.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHH
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLA 250 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~a 250 (279)
+.|.|.+++|+|.+|+.+|.++|+.|.++.+.+.+++....|++...++.. ......+.|++.|..+
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~l~~~l~~~ 69 (70)
T cd04873 3 VEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP--LDPERIARLEEALEDA 69 (70)
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc--CCHHHHHHHHHHHHhh
Confidence 458899999999999999999999999999999888888999997665422 1111222455555543
No 26
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.10 E-value=2.7e-05 Score=81.97 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=62.9
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE-eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhcc
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS-SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMS 255 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is-t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~ 255 (279)
....|.|.+.||||+|++|+.+|..+||+|++|.|. +.+|+++++|+|...++.......... .|+++|..+|....
T Consensus 667 ~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~g~~~~~~~~~~-~i~~~L~~~L~~~~ 744 (850)
T TIGR01693 667 GGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQ-ELLQGLVDVLAGLA 744 (850)
T ss_pred CeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCCCCCCCcHHHHH-HHHHHHHHHHcCCC
Confidence 344577999999999999999999999999999998 789999999999887764332222234 78999999997644
No 27
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=98.09 E-value=1.5e-05 Score=83.88 Aligned_cols=71 Identities=21% Similarity=0.299 Sum_probs=59.2
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHH
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLAL 251 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL 251 (279)
...|+|.|.||||+|++|+++|.++|++|.+|.|+|.|+++.++|++....+.+... .... .|+++|..+|
T Consensus 779 ~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~~g~~~~~-~~~~-~l~~~L~~~l 849 (850)
T TIGR01693 779 ATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDLFGLKLTD-EEEQ-RLLEVLAASV 849 (850)
T ss_pred eEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECCCCCCCCH-HHHH-HHHHHHHHHh
Confidence 344779999999999999999999999999999999999999999998777644333 2223 7888887776
No 28
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.08 E-value=6.2e-06 Score=75.46 Aligned_cols=57 Identities=32% Similarity=0.494 Sum_probs=49.9
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCC--CCcCchhhHHHHHHHHHHHHHHHHHHH
Q 023629 80 AVSKSHSQAEKRRRDRINAQLATLRKLIPK--SEKMDKAALLGSAIEHVKDLKLKAMEV 136 (279)
Q Consensus 80 ~~~~~h~~~Er~RR~~in~~~~~L~~lvP~--~~k~dkasil~~ai~yik~L~~~~~~l 136 (279)
-+|.--|..||||-.-||..|..||+|||. ..|++||.||+.+.+||.+|..+-.+|
T Consensus 59 mRReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 59 MRREIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHHHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 455666788999999999999999999995 469999999999999999998766554
No 29
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=98.06 E-value=2.7e-05 Score=82.01 Aligned_cols=85 Identities=18% Similarity=0.199 Sum_probs=65.3
Q ss_pred ceEEEecCceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe-eCCEEEEEEEEEecCCCCccccccHHHHHHHHH
Q 023629 169 SSINKVKGDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISS-VGGRIKSILVLCNKDACDHQESVSLSRRLKQAL 247 (279)
Q Consensus 169 v~V~~~~~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist-~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL 247 (279)
|.+..........|.|.+.||||||++|..+|..+||+|++|.|.| .+|+++++|+|...++.+.. ...+. .|+++|
T Consensus 667 V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d~~g~~~~-~~~~~-~l~~~L 744 (854)
T PRK01759 667 VKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLE-FDRRR-QLEQAL 744 (854)
T ss_pred EEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeCCCCCCCC-HHHHH-HHHHHH
Confidence 3333333333455779999999999999999999999999999976 89999999999887764332 22333 788999
Q ss_pred HHHHhhcc
Q 023629 248 HLALSRMS 255 (279)
Q Consensus 248 ~~aL~k~~ 255 (279)
.++|....
T Consensus 745 ~~aL~~~~ 752 (854)
T PRK01759 745 TKALNTNK 752 (854)
T ss_pred HHHHcCCC
Confidence 99986543
No 30
>PRK05007 PII uridylyl-transferase; Provisional
Probab=97.99 E-value=6.6e-05 Score=79.34 Aligned_cols=76 Identities=18% Similarity=0.208 Sum_probs=61.4
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee-CCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhcc
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV-GGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMS 255 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~ 255 (279)
....|.|+|.||||||+.|+.+|..+||+|+.|.|.|. +|+++++|+|...++.... ...+. .|+++|.++|....
T Consensus 700 ~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d~~g~~~~-~~~~~-~I~~~L~~aL~~~~ 776 (884)
T PRK05007 700 GGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLS-QDRHQ-VIRKALEQALTQSS 776 (884)
T ss_pred CeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEECCCCCCCC-HHHHH-HHHHHHHHHHcCCC
Confidence 34557799999999999999999999999999999875 5599999999887764332 22333 78999999996643
No 31
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=97.88 E-value=3e-05 Score=69.49 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=49.0
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHhcCCCCC--cCc-hhhHHHHHHHHHHHHHHHHHHH
Q 023629 78 ATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSE--KMD-KAALLGSAIEHVKDLKLKAMEV 136 (279)
Q Consensus 78 ~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~~--k~d-kasil~~ai~yik~L~~~~~~l 136 (279)
....+..||.-||+||+.|.+.|..|+.+||... +.. .++||..|+.||+.|+.+....
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~ 117 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQ 117 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHH
Confidence 3456678999999999999999999999999643 222 5899999999999999766554
No 32
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.87 E-value=6e-06 Score=85.38 Aligned_cols=60 Identities=30% Similarity=0.471 Sum_probs=54.1
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHhcCCCC-CcCchhhHHHHHHHHHHHHHHHHHHHhh
Q 023629 79 TAVSKSHSQAEKRRRDRINAQLATLRKLIPKS-EKMDKAALLGSAIEHVKDLKLKAMEVSK 138 (279)
Q Consensus 79 ~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~-~k~dkasil~~ai~yik~L~~~~~~l~~ 138 (279)
..+|.+||.+|||-|..||+++.+|+.+||.. .|+.|..+|..||+||++|+...+.+..
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~ 334 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKL 334 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccch
Confidence 35688999999999999999999999999965 5999999999999999999987777644
No 33
>PRK03381 PII uridylyl-transferase; Provisional
Probab=97.75 E-value=0.00018 Score=75.11 Aligned_cols=70 Identities=21% Similarity=0.203 Sum_probs=59.5
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
.+.|.|+|.||||+|++|+.+|..+|++|++|+|.+.+|.++++|+|...++. ..... .|+++|.++|..
T Consensus 599 ~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~----~~~~~-~l~~~L~~~L~~ 668 (774)
T PRK03381 599 MVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGS----PPDAA-LLRQDLRRALDG 668 (774)
T ss_pred eEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCC----cchHH-HHHHHHHHHHcC
Confidence 34577999999999999999999999999999999999999999999866552 12233 788999888876
No 34
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=97.73 E-value=0.00016 Score=76.64 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=60.3
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEE-EeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADI-SSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~i-st~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
.+.|.|+|.|+||+|++|+.+|..+||+|+.|.| ++.+|.++++|+|...++..........+.|+++|.++|...
T Consensus 704 ~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~ 780 (895)
T PRK00275 704 GTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780 (895)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCC
Confidence 4557799999999999999999999999999998 567889999999988776432221122337888998888653
No 35
>PLN03217 transcription factor ATBS1; Provisional
Probab=97.70 E-value=9.1e-05 Score=55.76 Aligned_cols=48 Identities=27% Similarity=0.513 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCCC------CCcCchhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 023629 94 DRINAQLATLRKLIPK------SEKMDKAALLGSAIEHVKDLKLKAMEVSKTLT 141 (279)
Q Consensus 94 ~~in~~~~~L~~lvP~------~~k~dkasil~~ai~yik~L~~~~~~l~~~~~ 141 (279)
+.|++.+..|+.|+|. ..|..-+-||++|..||+.|+++|..|.+...
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs 73 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLS 73 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999994 34556677999999999999999999988663
No 36
>PRK05092 PII uridylyl-transferase; Provisional
Probab=97.68 E-value=0.00028 Score=75.03 Aligned_cols=74 Identities=27% Similarity=0.346 Sum_probs=59.1
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe-eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISS-VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist-~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
...|.|.|.|++|+|.+|+.+|..+|++|+.|+|.| .+|+++++|+|...++........+. .|+++|..++..
T Consensus 732 ~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~~~g~~~~~~~~~~-~l~~~L~~~l~~ 806 (931)
T PRK05092 732 VTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQDAFGRDEDEPRRLA-RLAKAIEDALSG 806 (931)
T ss_pred eEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEECCCCCCCCCHHHHH-HHHHHHHHHHcC
Confidence 345679999999999999999999999999999976 79999999999876653221222334 788888888854
No 37
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=97.67 E-value=4.3e-05 Score=68.41 Aligned_cols=61 Identities=25% Similarity=0.351 Sum_probs=52.7
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHhcCCC----CCcCchhhHHHHHHHHHHHHHHHHHHHhh
Q 023629 78 ATAVSKSHSQAEKRRRDRINAQLATLRKLIPK----SEKMDKAALLGSAIEHVKDLKLKAMEVSK 138 (279)
Q Consensus 78 ~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~----~~k~dkasil~~ai~yik~L~~~~~~l~~ 138 (279)
....+..+|..||+|=..+|..|.+||.+||. ..|.+|..+|..||.||+.|++-++.-..
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~ 170 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEA 170 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhccccc
Confidence 44455677888999999999999999999993 56889999999999999999998877654
No 38
>PRK03059 PII uridylyl-transferase; Provisional
Probab=97.63 E-value=0.00031 Score=74.04 Aligned_cols=76 Identities=14% Similarity=0.223 Sum_probs=60.4
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEE-EeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhcc
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADI-SSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMS 255 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~i-st~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~ 255 (279)
-...|.|+|.++||||++|+-+|..+||+|+.|.| ++.+|.++++|+|...++. .......+.|+++|.++|....
T Consensus 677 ~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~~~~~--~~~~~~~~~i~~~l~~~l~~~~ 753 (856)
T PRK03059 677 EGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLDPEED--VHYRDIINLVEHELAERLAEQA 753 (856)
T ss_pred CeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeCCCCC--CChHHHHHHHHHHHHHHHcCCC
Confidence 34567799999999999999999999999999999 5679999999999876552 1112233378888888886543
No 39
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=97.55 E-value=0.001 Score=49.16 Aligned_cols=64 Identities=25% Similarity=0.348 Sum_probs=49.5
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
|++.+.||||+++.|..+|.++|.+|..++.++.++++.-.+.+.... .... .|+.+|.....+
T Consensus 5 Itv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~-------~~~~-~l~~~L~~l~~~ 68 (76)
T PF13740_consen 5 ITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPE-------DSLE-RLESALEELAEE 68 (76)
T ss_dssp EEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESH-------HHHH-HHHHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCc-------ccHH-HHHHHHHHHHHH
Confidence 569999999999999999999999999999999999988887775442 2334 677777766543
No 40
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=97.55 E-value=0.00053 Score=48.11 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=33.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGG 217 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~ 217 (279)
|.+.|++|||+|.+|+++|.++|++|..+.+.+.++
T Consensus 3 v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 3 VRVIVPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 458899999999999999999999999999998877
No 41
>PRK04374 PII uridylyl-transferase; Provisional
Probab=97.42 E-value=0.00099 Score=70.40 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=60.0
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe-eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISS-VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist-~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
-.+.|.|+|.++||||++|+.+|..+||+|+.|.|.| .+|.++++|+|...++.. ..... .|+++|.++|...
T Consensus 689 ~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~~~~~~---~~~~~-~i~~~l~~~l~~~ 762 (869)
T PRK04374 689 DALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLPQDTYA---DGDPQ-RLAAALRQVLAGD 762 (869)
T ss_pred CeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeCCCCCC---hHHHH-HHHHHHHHHHcCC
Confidence 3456779999999999999999999999999999986 799999999998766521 12234 6888888888664
No 42
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.35 E-value=0.0022 Score=47.14 Aligned_cols=65 Identities=18% Similarity=0.275 Sum_probs=51.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
|++.+.||||+..+|.++|.++|++|.+.+.++.++.+.-.+.+....+ ..+. .|+++|......
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~------~~~~-~l~~~l~~l~~~ 66 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS------ADSE-ALLKDLLFKAHE 66 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC------CCHH-HHHHHHHHHHHH
Confidence 4588999999999999999999999999999999988777776654332 3445 777777776654
No 43
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=97.35 E-value=0.0029 Score=46.85 Aligned_cols=64 Identities=17% Similarity=0.261 Sum_probs=50.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
+.+.|.||||+.+.|.+.|.+.|..|+.++....++.++-.+.+.... .+.. .|+++|...-.+
T Consensus 4 ltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~-------~~~~-~l~~~l~~~~~~ 67 (77)
T cd04893 4 ISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW-------DAIA-KLEAALPGLARR 67 (77)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc-------ccHH-HHHHHHHHHHHH
Confidence 569999999999999999999999999999999999887666665331 2334 777777765444
No 44
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=97.34 E-value=0.0015 Score=48.42 Aligned_cols=54 Identities=19% Similarity=0.317 Sum_probs=43.3
Q ss_pred CceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEEEecC
Q 023629 176 GDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVLCNKD 229 (279)
Q Consensus 176 ~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v~~~~ 229 (279)
+.+.+.+.|.+.+|+|+|.+|+.++.+.|+.|.+.++... ++.+.-.|.+...+
T Consensus 3 ~~f~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 3 KSFPVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp --EEEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred cEEEEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 3456677799999999999999999999999999999984 67888888887765
No 45
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.29 E-value=0.00071 Score=60.74 Aligned_cols=60 Identities=23% Similarity=0.364 Sum_probs=49.4
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHh-cCCCC-CcCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 81 VSKSHSQAEKRRRDRINAQLATLRK-LIPKS-EKMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 81 ~~~~h~~~Er~RR~~in~~~~~L~~-lvP~~-~k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
+|++-.+.||||=.|+|+.|..|+. -.++. ..+-|..||..||+||..||.-++++.+..
T Consensus 118 RRKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~ 179 (284)
T KOG3960|consen 118 RRKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAE 179 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4556678899999999999999976 34544 356799999999999999999999886543
No 46
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.14 E-value=0.0028 Score=47.99 Aligned_cols=67 Identities=12% Similarity=0.206 Sum_probs=52.0
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
|++.|+|+||++++|.+.|.++|++|...+..+.++.+.-.+.+.... ...++. .|+++|.....+.
T Consensus 4 l~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~-----~~~~~~-~L~~~l~~l~~~~ 70 (88)
T cd04872 4 ITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE-----SNLDFA-ELQEELEELGKEL 70 (88)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC-----CCCCHH-HHHHHHHHHHHHc
Confidence 569999999999999999999999999999998888876666664332 023445 7787777765553
No 47
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=97.13 E-value=0.0061 Score=44.89 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=48.4
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC------CEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG------GRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~------~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
|++.|.++||++.+|.+.|.++|++|.+.+..+.+ +.+.-.+.+.... ..++. .|+++|...-.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~------~~~~~-~l~~~l~~l~~~ 72 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA------GTDLD-ALREELEELCDD 72 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC------CCCHH-HHHHHHHHHHHH
Confidence 45889999999999999999999999999998877 5554444443322 23445 777777775544
No 48
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.11 E-value=0.0025 Score=45.55 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=52.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHH
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLA 250 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~a 250 (279)
|.|.|+|+.||=.+|++++-++||.|+...++|-|...+-+|.|..... .-.+.-. .||+.|.++
T Consensus 3 itvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~~~---~~~~rW~-lLK~RL~~~ 67 (69)
T cd04894 3 ITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPRPP---SIKVRWD-LLKNRLMSA 67 (69)
T ss_pred EEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecCCC---CCcccHH-HHHHHHHhc
Confidence 4599999999999999999999999999999999999888898865443 2223323 788887654
No 49
>PRK00194 hypothetical protein; Validated
Probab=96.97 E-value=0.0056 Score=46.34 Aligned_cols=68 Identities=15% Similarity=0.201 Sum_probs=50.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
.+.+.|.|+||++.+|.+.|.+.|++|...+..+.++.+.-.+.+..... ...+. .|+++|...-...
T Consensus 5 ~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~-~l~~~l~~l~~~~ 72 (90)
T PRK00194 5 IITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISES-----KKDFA-ELKEELEELGKEL 72 (90)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecCC-----CCCHH-HHHHHHHHHHHHc
Confidence 35699999999999999999999999999998888887665555532220 12344 7777777655443
No 50
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.85 E-value=0.013 Score=42.62 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=43.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
|++.|.||||++.+|.+.|.++|+.|...+..+ .++.+. +.++.... .....+. .|+++|...-..
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~--~~~~~~~~---~~~~~~~-~l~~~l~~l~~~ 69 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFF--MRVEFELE---GFDLSRE-ALEAAFAPVAAE 69 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEE--EEEEEEeC---CCCCCHH-HHHHHHHHHHHH
Confidence 458999999999999999999999999998885 233221 12222211 1113445 777777765543
No 51
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.009 Score=61.90 Aligned_cols=83 Identities=22% Similarity=0.247 Sum_probs=63.0
Q ss_pred EEEecCceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE-eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHH
Q 023629 171 INKVKGDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS-SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHL 249 (279)
Q Consensus 171 V~~~~~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is-t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~ 249 (279)
+....++.. |.|.|.++|.+|+.++.++...|++|+.|.|- +.+|+++|+|+|...++...+ ..... .+.++|.+
T Consensus 678 ~r~~~~~te--V~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~~~g~~~~-~dr~~-~~~~~l~~ 753 (867)
T COG2844 678 VRPHSGGTE--VFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLEPDGFPVE-EDRRA-ALRGELIE 753 (867)
T ss_pred ecccCCceE--EEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEecCCCCccc-hhHHH-HHHHHHHH
Confidence 344444444 44999999999999999999999999999996 589999999999877664333 12223 66778888
Q ss_pred HHhhccCC
Q 023629 250 ALSRMSSS 257 (279)
Q Consensus 250 aL~k~~~~ 257 (279)
++......
T Consensus 754 ~l~s~~~~ 761 (867)
T COG2844 754 ALLSGKAQ 761 (867)
T ss_pred HHhcCCCC
Confidence 88766665
No 52
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.73 E-value=0.013 Score=42.33 Aligned_cols=47 Identities=6% Similarity=0.062 Sum_probs=39.0
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee-CCEEEEEEEEEecC
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSV-GGRIKSILVLCNKD 229 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-~~~v~~~f~v~~~~ 229 (279)
.+.+.++||+|.+|+.+|.+.|..|.+.++... .+.+.-.|.++..+
T Consensus 3 ~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~ 50 (74)
T cd04887 3 RLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPS 50 (74)
T ss_pred EEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCC
Confidence 478999999999999999999999999998776 46666666676555
No 53
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=96.49 E-value=0.0029 Score=61.74 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=51.1
Q ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHhcCCC---CCc-CchhhHHHHHHHHHHHHHHHHHHH
Q 023629 75 EDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPK---SEK-MDKAALLGSAIEHVKDLKLKAMEV 136 (279)
Q Consensus 75 ~~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~---~~k-~dkasil~~ai~yik~L~~~~~~l 136 (279)
..|+..+|...|..||.|=..||+.|++|..+.-. +.| .-|.-||..||.-|-.|++||.+-
T Consensus 520 aeREkERR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 520 AEREKERRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred hhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 34666778889999999988899999999997642 222 348899999999999999999873
No 54
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.028 Score=39.52 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=34.5
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee-----CCEEEEEEEEEe
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSV-----GGRIKSILVLCN 227 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-----~~~v~~~f~v~~ 227 (279)
.|.+.++||.|.+|+++|.+.|++|.+...... .+...-.|.+..
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~ 51 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET 51 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe
Confidence 367889999999999999999999998887653 344444455544
No 55
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.37 E-value=0.021 Score=41.29 Aligned_cols=49 Identities=8% Similarity=0.186 Sum_probs=38.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee-CCEEEEEEEEEecC
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV-GGRIKSILVLCNKD 229 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-~~~v~~~f~v~~~~ 229 (279)
++.+.+.+++|+|.+|+++|.++|++|...+.... ++.+.-.|.+...+
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~ 51 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST 51 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc
Confidence 45688999999999999999999999999887553 45555566665543
No 56
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=95.63 E-value=0.048 Score=39.74 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=31.2
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
+.|.+.+|+|+|.+|+.++.+.+..|.+.++.+.
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~ 36 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK 36 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence 4588999999999999999999999999998764
No 57
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=95.26 E-value=0.06 Score=47.02 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=49.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHH
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLAL 251 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL 251 (279)
|++.+.||||+...|.++|.++|..|..++.+.++|.+.-++.|.... ..+. .|+.+|...-
T Consensus 11 iTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~-------~~~~-~le~~L~~l~ 72 (190)
T PRK11589 11 ITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSW-------NAIT-LIESTLPLKG 72 (190)
T ss_pred EEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCCh-------hHHH-HHHHHHHhhh
Confidence 679999999999999999999999999999999999887777772221 2334 6666665544
No 58
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=95.13 E-value=0.011 Score=49.35 Aligned_cols=54 Identities=28% Similarity=0.325 Sum_probs=47.4
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCC--CCcCchhhHHHHHHHHHHHHHHHHH
Q 023629 81 VSKSHSQAEKRRRDRINAQLATLRKLIPK--SEKMDKAALLGSAIEHVKDLKLKAM 134 (279)
Q Consensus 81 ~~~~h~~~Er~RR~~in~~~~~L~~lvP~--~~k~dkasil~~ai~yik~L~~~~~ 134 (279)
.+.-|+..||+|=..+|+.|..||.++|. +.|.+|.--|+-|..||-+|-+-++
T Consensus 78 qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl~ 133 (173)
T KOG4447|consen 78 QRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVLQ 133 (173)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhccc
Confidence 55679999999999999999999999995 5688999999999999998876443
No 59
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=95.09 E-value=0.17 Score=46.93 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=50.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
|++.|.||||+..+|.++|.++|++|...+.++ .++.+.-.+.+.... ...++. .|+++|...-.....
T Consensus 9 itv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~-----~~~~~~-~L~~~L~~l~~~l~l 79 (286)
T PRK06027 9 LTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDG-----LIFNLE-TLRADFAALAEEFEM 79 (286)
T ss_pred EEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCC-----CCCCHH-HHHHHHHHHHHHhCC
Confidence 669999999999999999999999999999998 888644444443311 112345 777777766655443
No 60
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=94.96 E-value=0.26 Score=35.73 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=36.9
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCC-EEEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGG-RIKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~-~v~~~f~v~~~~ 229 (279)
+...++||.|++|+++|.++|+.+++.......+ ...+.|++...+
T Consensus 4 ~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 4 FSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred EEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 4456899999999999999999999998776554 456677776554
No 61
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=94.93 E-value=0.18 Score=33.99 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=34.4
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEEE
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVLC 226 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v~ 226 (279)
.+.+.+++|.+.+|++.|.+.+++|....+...+ +...-.|.+.
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 46 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE 46 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence 3678899999999999999999999999887655 4433344443
No 62
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.87 E-value=0.17 Score=35.97 Aligned_cols=43 Identities=14% Similarity=0.260 Sum_probs=33.6
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEE
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVL 225 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v 225 (279)
.+.+.+++|+|.+|+.+|.++|..|......... +...-.+.+
T Consensus 4 ~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~ 48 (79)
T cd04881 4 RLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT 48 (79)
T ss_pred EEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence 3888999999999999999999999998876542 444333434
No 63
>PRK04435 hypothetical protein; Provisional
Probab=94.66 E-value=0.2 Score=41.85 Aligned_cols=50 Identities=16% Similarity=0.258 Sum_probs=39.5
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe-eCCEEEEEEEEEecC
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADISS-VGGRIKSILVLCNKD 229 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist-~~~~v~~~f~v~~~~ 229 (279)
+.+.+.+.+++|+|++|+++|.+.|++|...+... .+|.+.-.|.+...+
T Consensus 70 vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~ 120 (147)
T PRK04435 70 ITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSS 120 (147)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCC
Confidence 44558899999999999999999999999887654 356666667675544
No 64
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=94.65 E-value=0.26 Score=45.60 Aligned_cols=66 Identities=21% Similarity=0.185 Sum_probs=47.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEEEecCCCCccccccHHHHHHHHHHH-HHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVLCNKDACDHQESVSLSRRLKQALHL-ALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~-aL~k 253 (279)
+++.|.|++|+.+.|...|.++|++|+..+-+.. +++++-.+.+.... ...+.. +|+++|.. .-..
T Consensus 3 itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~-----~~~~~~-~l~~~l~~~~~~~ 71 (280)
T TIGR00655 3 LLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEG-----FRLEES-SLLAAFKSALAEK 71 (280)
T ss_pred EEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCC-----CCCCHH-HHHHHHHHHHHHH
Confidence 4699999999999999999999999999998874 46655444443221 123455 78888888 4444
No 65
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.17 E-value=0.21 Score=33.98 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=35.6
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEE
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVL 225 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v 225 (279)
++...++||.|.+++.+|.+.|+.|....+...+ +..+-.|.+
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v 45 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIF 45 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEE
Confidence 3678899999999999999999999888877655 666666655
No 66
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=94.16 E-value=0.28 Score=34.27 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=30.5
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
+.+.+.+++|.|.++++.|.+.++.|.+......
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~ 36 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIE 36 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEecc
Confidence 4588999999999999999999999998887765
No 67
>PRK07334 threonine dehydratase; Provisional
Probab=93.96 E-value=0.31 Score=47.14 Aligned_cols=55 Identities=15% Similarity=0.265 Sum_probs=43.1
Q ss_pred cCceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee-----CCEEEEEEEEEecC
Q 023629 175 KGDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV-----GGRIKSILVLCNKD 229 (279)
Q Consensus 175 ~~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-----~~~v~~~f~v~~~~ 229 (279)
..++.+.+.|.+.+|+|+|.+|+.+|.+.++.|.+.++.+. ++.+.-.|.++..+
T Consensus 322 ~~~y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 322 RAGRLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred hCCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 44545667799999999999999999999999999998754 45655556665554
No 68
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.95 E-value=0.41 Score=33.83 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=29.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
+.+..+++||.|.++++.|.++|++|........
T Consensus 4 ~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 4 LYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 4578899999999999999999999998876654
No 69
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=93.95 E-value=0.23 Score=34.37 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=36.2
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVL 225 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v 225 (279)
+.+...+++|+|.+|+++|.+.|+.|.+..+...+ +...-.|.+
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 34778999999999999999999999999987754 565555555
No 70
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=93.86 E-value=0.29 Score=34.64 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=36.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEe
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCN 227 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~ 227 (279)
++.|..+++||.|.+|+++|.+.|++|.+..+...++. .++.+..
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 45678899999999999999999999999887766553 5566644
No 71
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=93.82 E-value=0.3 Score=45.37 Aligned_cols=70 Identities=16% Similarity=0.257 Sum_probs=48.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE--eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADIS--SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is--t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
|++.|.||+|+.+.|...|.++|++|+..+-. +..+.++-.+.+..... ...++. +|+++|..+-.+...
T Consensus 12 itv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~~~~----~~~~~~-~l~~~l~~l~~~l~l 83 (289)
T PRK13010 12 LTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHAQSA----EAASVD-TFRQEFQPVAEKFDM 83 (289)
T ss_pred EEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEcCCC----CCCCHH-HHHHHHHHHHHHhCC
Confidence 56999999999999999999999999999985 33344332222221111 124455 888888887766554
No 72
>PRK08577 hypothetical protein; Provisional
Probab=93.78 E-value=0.6 Score=38.24 Aligned_cols=50 Identities=12% Similarity=0.311 Sum_probs=38.1
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEEEec
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVLCNK 228 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v~~~ 228 (279)
.+.+.+.+.+++|+|.+|+++|.+++.++.+.+..+.. +.+.-.|.+...
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~ 107 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLS 107 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeC
Confidence 34456999999999999999999999999988877653 444444555444
No 73
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=93.74 E-value=0.7 Score=33.95 Aligned_cols=46 Identities=9% Similarity=0.224 Sum_probs=36.5
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v~~~~ 229 (279)
+...+++|.|++|++.|.++|+.+++....... +.....|+|....
T Consensus 6 ~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~ 52 (80)
T cd04905 6 FTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG 52 (80)
T ss_pred EEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC
Confidence 556789999999999999999999998876653 3455677776554
No 74
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=93.74 E-value=0.51 Score=43.81 Aligned_cols=67 Identities=13% Similarity=0.204 Sum_probs=46.5
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhcc
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMS 255 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~ 255 (279)
|++.|.||||+..+|.+.|.++|++|...+..+ .++.+. +.+..... ...++. .|+++|...-....
T Consensus 10 itv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~--m~~~~~~p----~~~~~~-~L~~~L~~l~~~l~ 78 (286)
T PRK13011 10 LTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFF--MRVEFHSE----EGLDED-ALRAGFAPIAARFG 78 (286)
T ss_pred EEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEE--EEEEEecC----CCCCHH-HHHHHHHHHHHHhC
Confidence 569999999999999999999999999998863 333333 23322221 123345 78888877665543
No 75
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.45 E-value=0.57 Score=32.43 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.8
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist 214 (279)
.+.+.+++|.|.+|+.+|.++|++|.+.....
T Consensus 3 ~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 3 IVVHKDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred EEEeCCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 37789999999999999999999999887765
No 76
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.15 E-value=0.95 Score=32.05 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=34.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEEE
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVLC 226 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v~ 226 (279)
++.+..+++||.|.++++.|.+.|+.|.+...... ++...-+|.+.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~ 50 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ 50 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence 45578899999999999999999999987765432 34444455553
No 77
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.10 E-value=0.56 Score=33.65 Aligned_cols=34 Identities=12% Similarity=0.187 Sum_probs=29.5
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
+++.-+++||-|.++++.|.++|..|++......
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 3467789999999999999999999998876654
No 78
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.06 E-value=0.46 Score=30.11 Aligned_cols=34 Identities=26% Similarity=0.480 Sum_probs=29.9
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG 216 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~ 216 (279)
.+.+.+++|.+.+|+.+|...|+.|.........
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 4778899999999999999999999999886643
No 79
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=93.00 E-value=0.074 Score=52.87 Aligned_cols=39 Identities=38% Similarity=0.625 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCC----CCcCchhhHHHHHHHHHH
Q 023629 89 EKRRRDRINAQLATLRKLIPK----SEKMDKAALLGSAIEHVK 127 (279)
Q Consensus 89 Er~RR~~in~~~~~L~~lvP~----~~k~dkasil~~ai~yik 127 (279)
-||-|+|+|.-+..|.+|+|. .+|+||.+||.-+|.|++
T Consensus 33 SKRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 33 SKRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred chhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 356689999999999999995 579999999999999987
No 80
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=92.06 E-value=0.29 Score=37.59 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=51.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhcc
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMS 255 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~ 255 (279)
|+|...||+|+.+.|..+|.++|++|++.+=+-..|++--.+.|.-.. ...+.+ .|+..|.....+-.
T Consensus 6 ITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~-----~~~d~~-~lr~~l~~~~~~lg 73 (90)
T COG3830 6 ITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISK-----EVVDFA-ALRDELAAEGKKLG 73 (90)
T ss_pred EEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCCh-----HhccHH-HHHHHHHHHHHhcC
Confidence 569999999999999999999999999999888888865555553221 234555 77777777665543
No 81
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=91.98 E-value=1 Score=31.11 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=34.1
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEE
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVL 225 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v 225 (279)
.+...+++|+|.+|+..|.+.++.|.+...... ++...-.|.+
T Consensus 4 ~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~ 48 (72)
T cd04878 4 SVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVV 48 (72)
T ss_pred EEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEE
Confidence 377889999999999999999999999887654 3444444444
No 82
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.65 E-value=0.63 Score=32.07 Aligned_cols=43 Identities=21% Similarity=0.236 Sum_probs=32.1
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEE
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVL 225 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v 225 (279)
.+.-+++||.|.+++.+|.++|+.|.+....... +...-.|.+
T Consensus 3 ~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 3 AVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 3667899999999999999999999877765443 443334434
No 83
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=91.64 E-value=1.2 Score=38.85 Aligned_cols=69 Identities=9% Similarity=0.163 Sum_probs=47.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCC------EEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGG------RIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~------~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
+.|++...||||++.+|.++|.+.|++|.+-+..+.+. .+.-.+.+....+ ..+. .|+.+|...-..
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~------~~~~-~L~~~l~~l~~e 168 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPAS------QDAA-NIEQAFKALCTE 168 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCC------CCHH-HHHHHHHHHHHH
Confidence 45679999999999999999999999999888777653 2222333322222 3344 677776665544
Q ss_pred cc
Q 023629 254 MS 255 (279)
Q Consensus 254 ~~ 255 (279)
..
T Consensus 169 L~ 170 (190)
T PRK11589 169 LN 170 (190)
T ss_pred hC
Confidence 43
No 84
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=91.63 E-value=0.15 Score=52.09 Aligned_cols=42 Identities=31% Similarity=0.528 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC----CCcCchhhHHHHHHHHHH
Q 023629 86 SQAEKRRRDRINAQLATLRKLIPK----SEKMDKAALLGSAIEHVK 127 (279)
Q Consensus 86 ~~~Er~RR~~in~~~~~L~~lvP~----~~k~dkasil~~ai~yik 127 (279)
..+-|-||-|-|+-|.+|..+||- ...+|||+|+.-||.|++
T Consensus 51 RdAARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 51 RDAARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 457799999999999999999993 468899999999999998
No 85
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=91.51 E-value=1.1 Score=46.84 Aligned_cols=61 Identities=10% Similarity=0.042 Sum_probs=47.6
Q ss_pred ceEEEecC---ceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEEEecC
Q 023629 169 SSINKVKG---DTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVLCNKD 229 (279)
Q Consensus 169 v~V~~~~~---~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v~~~~ 229 (279)
+.|..... .+.+.|.|.+.+|+|+|.+|+.+|.+.++.|.++++.+. ++.+.-.|.+++.+
T Consensus 653 I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 653 VDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 44554332 466788899999999999999999999999999998765 46666667776655
No 86
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=91.46 E-value=0.28 Score=50.88 Aligned_cols=58 Identities=14% Similarity=0.172 Sum_probs=47.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALS 252 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~ 252 (279)
++|.+.+|+|+|..|+.+|. +|..|.++|.|..++++|++. .+ ..-. .+.++|..+|.
T Consensus 634 ~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~--~~------~~r~-~~~~~~~~~~~ 691 (693)
T PRK00227 634 LEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALK--PG------FDRA-TVERDVTRVLA 691 (693)
T ss_pred EEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEec--Cc------ccHH-HHHHHHHHHHh
Confidence 56889999999999999999 999999999999999999997 21 1123 56777777764
No 87
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.27 E-value=0.2 Score=48.32 Aligned_cols=53 Identities=23% Similarity=0.367 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCcCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 023629 87 QAEKRRRDRINAQLATLRKLIPK----SEKMDKAALLGSAIEHVKDLKLKAMEVSKT 139 (279)
Q Consensus 87 ~~Er~RR~~in~~~~~L~~lvP~----~~k~dkasil~~ai~yik~L~~~~~~l~~~ 139 (279)
-+.|.||++-|.-|.+|..++|- ....||++|+.-|..|||.-.-=-+.|.+.
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr~vFPeGLGea 63 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMRNVFPEGLGEA 63 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHHHhcccccchh
Confidence 35688999999999999999994 346899999999999999544333344433
No 88
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=91.09 E-value=1.1 Score=46.72 Aligned_cols=67 Identities=10% Similarity=0.146 Sum_probs=54.3
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
+.+.+++|+|++++-+|.-+|+.|.+|++.+ +|.....|.|....+ ...+-. .+.|++..++.-.-.
T Consensus 552 ~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~----~~~~~~-~~~~~~~~~~~~~~~ 618 (693)
T PRK00227 552 IWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGP----QDFDPQ-EFLQAYKSGVYSELP 618 (693)
T ss_pred EecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCC----CCCChH-HHHHHHHHhhcCCCC
Confidence 3448999999999999999999999999999 888889999987655 234445 778888887755443
No 89
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=90.35 E-value=0.25 Score=34.72 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=33.2
Q ss_pred EEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEE
Q 023629 183 SVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVL 225 (279)
Q Consensus 183 ~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v 225 (279)
-+.+.+++|+|.+|+.+|.+.|..|...+....++...-.|.+
T Consensus 3 ~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~ 45 (69)
T cd04901 3 LHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI 45 (69)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence 3678999999999999999999999777665544555444444
No 90
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.07 E-value=2.4 Score=32.44 Aligned_cols=46 Identities=4% Similarity=0.047 Sum_probs=37.5
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~ 229 (279)
+...++||.|++++.+|...|+.+.+-..-...+. -.+.|+|....
T Consensus 19 f~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 19 FSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 55678999999999999999999999998875443 45788886554
No 91
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=89.45 E-value=1.6 Score=36.95 Aligned_cols=45 Identities=11% Similarity=0.247 Sum_probs=36.4
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVLC 226 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v~ 226 (279)
+++.-+++||.|.+|...|...|+.|.+..+...+ +...-+|.+.
T Consensus 4 isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~ 50 (157)
T TIGR00119 4 LSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV 50 (157)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE
Confidence 45788999999999999999999999999888665 4444455553
No 92
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=89.21 E-value=2.7 Score=34.74 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=43.4
Q ss_pred CceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE-eeCCEEEEEEEEEec
Q 023629 176 GDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS-SVGGRIKSILVLCNK 228 (279)
Q Consensus 176 ~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is-t~~~~v~~~f~v~~~ 228 (279)
++-.+.+++.-++|.|.|+++++++...++.|+..+=+ ..+|++--++.+...
T Consensus 69 k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s 122 (150)
T COG4492 69 KERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS 122 (150)
T ss_pred cceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch
Confidence 34456677999999999999999999999999987765 688988777777544
No 93
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=89.21 E-value=2.2 Score=44.47 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=43.4
Q ss_pred ceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEEEecC
Q 023629 177 DTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVLCNKD 229 (279)
Q Consensus 177 ~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v~~~~ 229 (279)
.+.+.|.|.+.+|+|+|.+|+.+|.+.++.|.++++.+.. +.+.-.|.+++.+
T Consensus 624 ~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 624 EFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred eeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 4667788999999999999999999999999999987765 4545556666554
No 94
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=89.12 E-value=3.3 Score=30.12 Aligned_cols=46 Identities=4% Similarity=0.079 Sum_probs=37.2
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~ 229 (279)
+...++||.|++++..|...|+.+++-..-...+. ..+.|+|...+
T Consensus 5 f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 5 FSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 34467999999999999999999999998875543 46788886554
No 95
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=89.06 E-value=2.3 Score=44.16 Aligned_cols=53 Identities=8% Similarity=0.119 Sum_probs=43.7
Q ss_pred ceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEEEecC
Q 023629 177 DTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVLCNKD 229 (279)
Q Consensus 177 ~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v~~~~ 229 (279)
.+.+.|.|.+.+|+|+|.+|+.+|.+.+..|.+.++.+.. +.+.-.|.+++.+
T Consensus 608 ~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 608 RFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred eeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 4677788999999999999999999999999999998763 5555556666554
No 96
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=88.97 E-value=1.6 Score=32.46 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=31.2
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGG 217 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~ 217 (279)
+++..+++||+|.+|+.+|..-|..|.+-.+....+
T Consensus 5 isi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~ 40 (76)
T PRK06737 5 FSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDT 40 (76)
T ss_pred EEEEEecCCCHHHHHHHHHhccCcceEEEEecccCC
Confidence 457788999999999999999999999988885443
No 97
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=88.83 E-value=2 Score=36.52 Aligned_cols=44 Identities=14% Similarity=0.263 Sum_probs=35.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVL 225 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v 225 (279)
+++.-+++||.|.+|+..|...|+.|.+..+.... +...-+|.+
T Consensus 5 IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V 50 (161)
T PRK11895 5 LSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVT 50 (161)
T ss_pred EEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEE
Confidence 45788999999999999999999999999887654 444445555
No 98
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=88.76 E-value=0.27 Score=44.91 Aligned_cols=54 Identities=26% Similarity=0.317 Sum_probs=45.7
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHhcCC---CCCcCchhhHHHHHHHHHHHHHH
Q 023629 78 ATAVSKSHSQAEKRRRDRINAQLATLRKLIP---KSEKMDKAALLGSAIEHVKDLKL 131 (279)
Q Consensus 78 ~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP---~~~k~dkasil~~ai~yik~L~~ 131 (279)
...++..=|..||+|--.+|+.|..||.++| ...|+.|.-.|.-|-.||..|++
T Consensus 69 ~~~rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~ 125 (254)
T KOG3898|consen 69 LTLRRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSE 125 (254)
T ss_pred hhhhcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcc
Confidence 3445556678999999999999999999999 35688899999999999998775
No 99
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.75 E-value=4.6 Score=29.64 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=37.1
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v~~~~ 229 (279)
+...++||.|++++..|+..|+.+.+-..-... ....+.|++...+
T Consensus 5 ~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 5 FSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 344688999999999999999999999987653 3356788887664
No 100
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=88.36 E-value=2.3 Score=31.63 Aligned_cols=44 Identities=16% Similarity=0.365 Sum_probs=34.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVL 225 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v 225 (279)
+++.-+++||.|.+|+..|..-|..|.+-++... ++...=++.+
T Consensus 6 lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 6 LTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred EEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 4577889999999999999999999999998874 3444434444
No 101
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=88.30 E-value=0.83 Score=41.45 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=45.1
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCchhhHHHHHHHHHHHHHHHHH
Q 023629 80 AVSKSHSQAEKRRRDRINAQLATLRKLIPKS---EKMDKAALLGSAIEHVKDLKLKAM 134 (279)
Q Consensus 80 ~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~---~k~dkasil~~ai~yik~L~~~~~ 134 (279)
.++.+-+..||+|-..+|..|..||..||.. .|++|-.-|..|-.||--|-..++
T Consensus 173 ~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 173 HRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred hhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 3455667889999999999999999999953 477788889999999987765543
No 102
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=87.81 E-value=1.8 Score=30.51 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=34.0
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEE
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVL 225 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v 225 (279)
+...+++|.+.++.+.|.++|+.|.+..... .++...-+|.+
T Consensus 4 v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v 47 (73)
T cd04902 4 VRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSV 47 (73)
T ss_pred EEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEe
Confidence 5688999999999999999999998877654 45666656655
No 103
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=87.16 E-value=3.2 Score=35.79 Aligned_cols=66 Identities=14% Similarity=0.232 Sum_probs=46.3
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhcc
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMS 255 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~ 255 (279)
+++..+++||+|.+|...|...|++|.+-.+.. ..+...-++.+ .++ . ..+. .|+..|.+.+.-..
T Consensus 5 isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv--~~~----~-~~ie-qL~kQL~KLidVl~ 72 (174)
T CHL00100 5 LSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVV--PGD----D-RTIE-QLTKQLYKLVNILK 72 (174)
T ss_pred EEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEE--ECC----H-HHHH-HHHHHHHHHhHhhE
Confidence 458889999999999999999999999988876 44444444444 322 1 1134 67777777665443
No 104
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.91 E-value=4.7 Score=28.57 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=27.1
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVG 216 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~ 216 (279)
+.-+++||-|.+++++|.. |.+|+..+....+
T Consensus 3 v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~ 34 (68)
T cd04885 3 VTFPERPGALKKFLELLGP-PRNITEFHYRNQG 34 (68)
T ss_pred EECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCC
Confidence 5568999999999999999 9999987776543
No 105
>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.74 E-value=2 Score=31.98 Aligned_cols=44 Identities=25% Similarity=0.440 Sum_probs=35.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVL 225 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v 225 (279)
|+++..-||-+++++.-||..|+.-|.+|.|.. .+++-..+..+
T Consensus 3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~ 48 (77)
T cd04898 3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRV 48 (77)
T ss_pred ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEE
Confidence 457778899999999999999999999999974 56665554333
No 106
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=85.57 E-value=2.9 Score=31.75 Aligned_cols=47 Identities=11% Similarity=0.010 Sum_probs=36.2
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEec
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNK 228 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~ 228 (279)
+++.-+++||+|.+|...|...|..|.+-.++...+.-+.-+.+...
T Consensus 5 isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 5 LKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred EEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 45778899999999999999999999999988655544444444333
No 107
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=84.39 E-value=2.8 Score=29.78 Aligned_cols=38 Identities=18% Similarity=0.333 Sum_probs=29.8
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVL 225 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v 225 (279)
++||.|.+|+..|..-|..|.+-++.. .++...-++.+
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v 40 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVV 40 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEE
Confidence 579999999999999999999999987 55555544444
No 108
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=83.92 E-value=5.3 Score=36.83 Aligned_cols=71 Identities=18% Similarity=0.197 Sum_probs=46.3
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
+.++|.+++|+.+.|...|.+.|..|+.++-.+ +.....|.....-... ....... .|++++..+..++..
T Consensus 10 LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~--D~~~g~FFmR~~f~~~-~~~~~~~-~l~~~f~~~a~~f~m 80 (287)
T COG0788 10 LTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD--DPETGRFFMRVEFEGE-GGPLDRE-ALRAAFAPLAEEFGM 80 (287)
T ss_pred EEEecCCCCCcHHHHHHHHHHcCCceeeccccc--ccccCeEEEEEEEecC-CCcccHH-HHHHHHHHHHHhhCc
Confidence 449999999999999999999999999988763 3322333333221100 1123334 677777776665554
No 109
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.66 E-value=7.2 Score=31.23 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=36.9
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~ 229 (279)
+...++||.|++++..|...|+.+++-..-...+. --+.|+|...+
T Consensus 46 fsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 46 FSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 44478999999999999999999999998776433 45778886654
No 110
>PRK11899 prephenate dehydratase; Provisional
Probab=81.51 E-value=8.6 Score=35.56 Aligned_cols=47 Identities=11% Similarity=0.103 Sum_probs=39.0
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCC-EEEEEEEEEecCC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGG-RIKSILVLCNKDA 230 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~-~v~~~f~v~~~~~ 230 (279)
+...++||.|++++.+|...|+++++-..-...+ ...+.|++...+.
T Consensus 199 ~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 199 FRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred EEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 3446899999999999999999999999887644 4678899977664
No 111
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=80.88 E-value=1.6 Score=37.57 Aligned_cols=46 Identities=15% Similarity=0.357 Sum_probs=41.4
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEe
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCN 227 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~ 227 (279)
|+....+|||+.-.|.++..+.|..++.++++.+|+.+..++.+..
T Consensus 8 Itavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg 53 (176)
T COG2716 8 ITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG 53 (176)
T ss_pred EEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee
Confidence 6689999999999999999999999999999999999877666643
No 112
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=80.79 E-value=6.4 Score=30.67 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=34.5
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVL 225 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v 225 (279)
+++..+++||+|.+|.-.|..-|..|-+-.+...+..-+.-+.+
T Consensus 11 isvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmti 54 (96)
T PRK08178 11 LELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWL 54 (96)
T ss_pred EEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEE
Confidence 56888999999999999999999999988887655443333333
No 113
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=78.70 E-value=18 Score=26.83 Aligned_cols=44 Identities=7% Similarity=0.129 Sum_probs=29.1
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v~~~~ 229 (279)
+.-+++||-|.+++++|- +..|........+ +...-.+.++..+
T Consensus 6 v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~ 50 (85)
T cd04906 6 VTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVAN 50 (85)
T ss_pred EecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCC
Confidence 777899999999999999 6666655444322 3333444455544
No 114
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=77.72 E-value=11 Score=39.31 Aligned_cols=53 Identities=11% Similarity=0.162 Sum_probs=42.4
Q ss_pred CceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEE-EEEEEec
Q 023629 176 GDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKS-ILVLCNK 228 (279)
Q Consensus 176 ~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~-~f~v~~~ 228 (279)
..+.+.|.|...+|+|+|.+|+++|-+.+..|.+.++.+.++.+.. .|.++..
T Consensus 624 ~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~ 677 (701)
T COG0317 624 QVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVK 677 (701)
T ss_pred cceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEEC
Confidence 3577888899999999999999999999999999999886555433 3334433
No 115
>PRK06382 threonine dehydratase; Provisional
Probab=77.56 E-value=12 Score=36.33 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=37.5
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE----ee-CCEEEEEEEEEec
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS----SV-GGRIKSILVLCNK 228 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is----t~-~~~v~~~f~v~~~ 228 (279)
.+++.|.-.++||.|.+|++.|.++|.+|++.... .. .+...-+|.|+..
T Consensus 330 ~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 330 LVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 36777889999999999999999999999987764 11 2344445555444
No 116
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=75.86 E-value=17 Score=34.64 Aligned_cols=37 Identities=11% Similarity=0.194 Sum_probs=31.6
Q ss_pred ceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 177 DTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 177 ~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
+-.+++.|.-+++||.|.++++.+.+.|.+|++....
T Consensus 303 gr~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~ 339 (380)
T TIGR01127 303 GRKVRIETVLPDRPGALYHLLESIAEARANIVKIDHD 339 (380)
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 3345667889999999999999999999999988655
No 117
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=75.55 E-value=16 Score=41.51 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=47.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-----CEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-----GRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-----~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
+++.|....++..|++|+-+|+++||.|+...--.+. ...++.|.+....+. ...+. .+++.+.+++...
T Consensus 490 ~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~~----~~~~~-~~~~~~~~a~~~v 564 (1528)
T PF05088_consen 490 LRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDGD----ALDLD-DIRERFEEAFEAV 564 (1528)
T ss_pred EEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCCc----cccHH-HHHHHHHHHHHHH
Confidence 4555888888999999999999999999987644332 246788888776652 23333 4555555555443
No 118
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=75.15 E-value=7.9 Score=31.49 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=37.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEE
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVL 225 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v 225 (279)
.|++..+++||-|..++.+|.+.|+.|-.-.|+-.+++-.--++|
T Consensus 5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV 49 (142)
T COG4747 5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVV 49 (142)
T ss_pred EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEc
Confidence 467899999999999999999999999999998887764433333
No 119
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=69.99 E-value=22 Score=33.00 Aligned_cols=47 Identities=9% Similarity=0.143 Sum_probs=38.5
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecCC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKDA 230 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~~ 230 (279)
+...++||.|++++.+|...|++...-.+-...+. -.+.|++...+.
T Consensus 199 f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~ 246 (279)
T COG0077 199 FSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH 246 (279)
T ss_pred EEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC
Confidence 44559999999999999999999999998876544 567888876654
No 120
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=69.51 E-value=25 Score=34.02 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=38.8
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecCC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKDA 230 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~~ 230 (279)
+...++||.|++++.+|...|++++.-..-...+. ..+.|++...+.
T Consensus 302 ~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 302 MATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred EEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 34468999999999999999999999998865544 678899977754
No 121
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=67.91 E-value=18 Score=31.29 Aligned_cols=49 Identities=10% Similarity=0.157 Sum_probs=38.3
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDA 230 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~ 230 (279)
++|..+++||.|.++.-.+.++|-.|+.+.--..++--...+|.+.++.
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi 53 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGI 53 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCC
Confidence 5688999999999999999999999998887654443345566665654
No 122
>PRK08198 threonine dehydratase; Provisional
Probab=67.56 E-value=35 Score=32.81 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=31.2
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist 214 (279)
.+++.+.-+++||.|.++++.|.+.|.+|+......
T Consensus 327 ~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~~ 362 (404)
T PRK08198 327 YLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHDR 362 (404)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEE
Confidence 355668899999999999999999999999887764
No 123
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=67.33 E-value=36 Score=23.06 Aligned_cols=27 Identities=11% Similarity=0.105 Sum_probs=22.5
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEEe
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ist 214 (279)
+.+|++.+|+++|.+.|+.|.-...+.
T Consensus 13 ~~~~~~~~i~~~l~~~~I~v~~i~~~~ 39 (66)
T cd04922 13 GTPGVAATFFSALAKANVNIRAIAQGS 39 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecC
Confidence 578999999999999999996665443
No 124
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=67.23 E-value=33 Score=23.76 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=19.8
Q ss_pred CCccHHHHHHHHHHhcCCeeE
Q 023629 188 DQPELYKEIIRVLKGLGLTTV 208 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~ 208 (279)
+.+|++.+++++|.+.|+.|.
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~ 33 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEIL 33 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEE
Confidence 579999999999999999996
No 125
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=64.25 E-value=7.5 Score=40.21 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=51.4
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCCC-----cCchhhHHHHHHHHHHHHHHHHHHHhhhcC
Q 023629 80 AVSKSHSQAEKRRRDRINAQLATLRKLIPKSE-----KMDKAALLGSAIEHVKDLKLKAMEVSKTLT 141 (279)
Q Consensus 80 ~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~~-----k~dkasil~~ai~yik~L~~~~~~l~~~~~ 141 (279)
.+...|+-+|++||.+|.-+|..|-+++-+.. |+.++.-++.++.||..++.+...+.++..
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~~ 716 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEAH 716 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhhh
Confidence 55668999999999999999999999987543 556667799999999999988877766543
No 126
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.73 E-value=54 Score=23.83 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=35.6
Q ss_pred cCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 186 CDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 186 c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
..+.+|.+.+|+++|.+.|+.|-.... +. .--.|.+...+. ...+.|+++|...|.+
T Consensus 11 ~~~~~g~~~~IF~~La~~~I~VDmI~~---s~-~~iSftv~~~d~-------~~~~~~~~~l~~~l~~ 67 (75)
T cd04932 11 MLHAQGFLAKVFGILAKHNISVDLITT---SE-ISVALTLDNTGS-------TSDQLLTQALLKELSQ 67 (75)
T ss_pred CCCCcCHHHHHHHHHHHcCCcEEEEee---cC-CEEEEEEecccc-------chhHHHHHHHHHHHHh
Confidence 356799999999999999998877643 22 223455543321 1112455566666655
No 127
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=62.54 E-value=41 Score=22.07 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEEe
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ist 214 (279)
+++|.+.+++++|.+.++.|.....+.
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 578999999999999999998776543
No 128
>PLN02317 arogenate dehydratase
Probab=59.54 E-value=50 Score=32.07 Aligned_cols=46 Identities=9% Similarity=0.128 Sum_probs=37.2
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE---------------EEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGR---------------IKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~---------------v~~~f~v~~~~ 229 (279)
+.-+++||.|.+++.+|...|+.+++-..-...+. .-+.|+|.-+.
T Consensus 288 fsl~~~pG~L~k~L~~Fa~~~INLtkIESRP~~~~~~~~~~~~~~~~~~~~eY~FyVD~eg 348 (382)
T PLN02317 288 FSLEEGPGVLFKALAVFALRDINLTKIESRPQRKRPLRVVDDSNSGTAKYFDYLFYVDFEA 348 (382)
T ss_pred EEcCCCCchHHHHHHHHHHCCCCEEEEEeeecCCCCccccccccccccccccEEEEEEEEc
Confidence 33467999999999999999999999998775444 46788886654
No 129
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=59.38 E-value=14 Score=27.67 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=40.7
Q ss_pred EEEEcCC-CccHHHHHHHHHHhcCCeeEEEEEEeeCCEE---------EEEEEEEecCCCCccccccHHHHHHHHHHHHH
Q 023629 182 ASVSCDD-QPELYKEIIRVLKGLGLTTVRADISSVGGRI---------KSILVLCNKDACDHQESVSLSRRLKQALHLAL 251 (279)
Q Consensus 182 v~i~c~~-r~glL~~Il~aLe~lgL~V~~a~ist~~~~v---------~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL 251 (279)
|++...+ +.|.++.|..+|.++|++|.+.+- ..+++ ..++.+..... ..+.. .|+.+|.+.-
T Consensus 2 vtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~--l~~~~~~~~~~~~~~~~~e~~v~~~-----~~~~~-~lr~~L~~la 73 (84)
T cd04871 2 VTLLGRPLTAEQLAAVTRVVADQGLNIDRIRR--LSGRVPLEEQDDSPKACVEFSVRGQ-----PADLE-ALRAALLELA 73 (84)
T ss_pred EEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHH--hhccccccccCCCCcEEEEEEEeCC-----CCCHH-HHHHHHHHHh
Confidence 4477778 899999999999999999875443 33332 33444444432 13444 7777777543
No 130
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=57.37 E-value=16 Score=31.51 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=43.6
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE--eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHH
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS--SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLA 250 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is--t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~a 250 (279)
.+.|++...||||++-++.+.|..+|+.|-+-... ...+.--..|+....-.- .....+. .|++++...
T Consensus 92 ~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~it~~l--Pa~~~i~-~l~~~f~al 162 (176)
T COG2716 92 PVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQITARL--PANLSIS-ALRDAFEAL 162 (176)
T ss_pred eEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhhhccC--CCcCcHH-HHHHHHHHH
Confidence 35577999999999999999999999887654443 333333344555433221 1233444 666665544
No 131
>PRK11898 prephenate dehydratase; Provisional
Probab=56.81 E-value=46 Score=30.74 Aligned_cols=47 Identities=6% Similarity=0.051 Sum_probs=36.7
Q ss_pred EEcCC-CccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecCC
Q 023629 184 VSCDD-QPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKDA 230 (279)
Q Consensus 184 i~c~~-r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~~ 230 (279)
+...+ +||.|++++..|...|+.+++-..-...++ ..+.|+|...+.
T Consensus 201 f~l~~~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 201 LTLPNNLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred EEeCCCCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 44444 699999999999999999999998875443 457888876653
No 132
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=56.04 E-value=23 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
+.+|+++++..+|.+.|+.|....
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE
Confidence 589999999999999999998777
No 133
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=55.78 E-value=48 Score=27.05 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.6
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeE
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTV 208 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~ 208 (279)
+.-+++||-|+.|+++|-..++.+-
T Consensus 74 VEmeD~PG~l~~I~~vl~d~diNld 98 (142)
T COG4747 74 VEMEDVPGGLSRIAEVLGDADINLD 98 (142)
T ss_pred EEecCCCCcHHHHHHHHhhcCcCce
Confidence 6678999999999999998886654
No 134
>PRK08526 threonine dehydratase; Provisional
Probab=55.21 E-value=70 Score=31.04 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.0
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG 216 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~ 216 (279)
+++.+.-.++||-|.++++.+-+.+.+|+........
T Consensus 327 ~~~~~~~~d~pg~l~~~~~~~~~~~~~i~~~~~~r~~ 363 (403)
T PRK08526 327 MKLHVTLVDKPGALMGLTDILKEANANIVKIDYDRFS 363 (403)
T ss_pred EEEEEEcCCCCCHHHHHHHHHccCCCcEEEEEEEecc
Confidence 5566888999999999999999999999988886543
No 135
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=51.18 E-value=56 Score=22.30 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=22.1
Q ss_pred cCCCccHHHHHHHHHHhcCCeeEEEE
Q 023629 186 CDDQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 186 c~~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
..+.+|.+.+++++|.+.|+.|.-..
T Consensus 9 ~~~~~g~~~~i~~~L~~~~I~i~~i~ 34 (75)
T cd04913 9 VPDKPGVAAKIFGALAEANINVDMIV 34 (75)
T ss_pred CCCCCcHHHHHHHHHHHcCCeEEEEE
Confidence 35789999999999999999996443
No 136
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=50.89 E-value=90 Score=22.34 Aligned_cols=52 Identities=17% Similarity=0.370 Sum_probs=36.1
Q ss_pred eEEEEEEEcCCC-ccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCC
Q 023629 178 TLIKASVSCDDQ-PELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDA 230 (279)
Q Consensus 178 ~~I~v~i~c~~r-~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~ 230 (279)
..+++....+.. ..+++++.+.+ +..++|+.++|..+++..+..|.+...+.
T Consensus 3 ~l~~l~f~g~~~~~piis~l~~~~-~v~~nIl~g~i~~i~~~~~G~l~l~l~g~ 55 (76)
T PF09383_consen 3 RLVRLTFTGNSAQEPIISQLIREF-GVDVNILHGNIEEIQGTPFGILILELPGD 55 (76)
T ss_dssp EEEEEEEESCSSSSCHHHHHHHHH-T-EEEEEEEEEEEETTEEEEEEEEEEES-
T ss_pred eEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEEEeEEcCCeeEEEEEEEEECC
Confidence 456666766553 34555555443 34577999999999999999999987653
No 137
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=50.69 E-value=24 Score=35.33 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=32.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG 216 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~ 216 (279)
+++|.|.||-|+..+|++.|...++++....|...|
T Consensus 2 rl~~~~~dr~g~~~~~l~~~~~~~~~~~~~e~~~~~ 37 (520)
T PRK10820 2 RLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIG 37 (520)
T ss_pred eEEEEeeccccHHHHHHHHHHhcCCCccEEEEcCCC
Confidence 567999999999999999999999999999997653
No 138
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=49.24 E-value=1.1e+02 Score=23.07 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=37.7
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEEE
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVLC 226 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v~ 226 (279)
.+.+....+|+.|-+|+++.+.-|+.|...+.++. ++++---|.|.
T Consensus 5 qldl~ar~~pe~leRVLrvtrhRGF~vcamnmt~~~da~~~nie~tV~ 52 (86)
T COG3978 5 QLDLSARFNPETLERVLRVTRHRGFRVCAMNMTAAVDAGNANIELTVD 52 (86)
T ss_pred EEeeeccCChHHHHHHHHHhhhcCeEEEEeecccccccccceEEEEEc
Confidence 35577889999999999999999999999999986 66655455553
No 139
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.25 E-value=91 Score=21.59 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=24.7
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEEeeCCE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADISSVGGR 218 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ist~~~~ 218 (279)
+.+|++.+++++|.+.|+.|.-...++-+-.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~s 42 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVN 42 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccce
Confidence 4578999999999999999977666554444
No 140
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=45.81 E-value=17 Score=30.72 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCC--cCchhhHHHHHHHHHHHHHH
Q 023629 88 AEKRRRDRINAQLATLRKLIPKSE--KMDKAALLGSAIEHVKDLKL 131 (279)
Q Consensus 88 ~Er~RR~~in~~~~~L~~lvP~~~--k~dkasil~~ai~yik~L~~ 131 (279)
.|+.|-.++++.+.-|+.|+|.+. ++.+---|.-+-+||..|.+
T Consensus 29 ~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 29 KERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred HHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 688888899999999999999654 33222225555555555443
No 141
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=45.61 E-value=84 Score=22.02 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=22.7
Q ss_pred CccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 189 QPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 189 r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
++|++.+++++|.+.|++|.-...+.-
T Consensus 14 ~~gv~~ki~~~L~~~~I~v~~i~~~~s 40 (66)
T cd04915 14 TPGVLARGLAALAEAGIEPIAAHQSMR 40 (66)
T ss_pred cchHHHHHHHHHHHCCCCEEEEEecCC
Confidence 679999999999999999976665543
No 142
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=45.34 E-value=1.7e+02 Score=24.93 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.0
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee---CCEEEEEEEE
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV---GGRIKSILVL 225 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~---~~~v~~~f~v 225 (279)
.|.+.|.-.|+||-|.++++.|-+.|.+|++.--+.- |+++---+.+
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~ 54 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVF 54 (170)
T ss_pred EEEEEEEecCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEE
Confidence 3556678889999999999999999999888776643 6665433333
No 143
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=45.26 E-value=6.6 Score=40.60 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=48.8
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC-----CcCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 77 RATAVSKSHSQAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 77 ~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~-----~k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
.....+..|...+|+||..+-++|..|-.|.|.. .+..+++||. +.|+.+++.-+.+.++.
T Consensus 783 ~n~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 783 FNGMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred ccceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 3344566789999999999999999999999942 3567899998 88898888877776543
No 144
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=43.81 E-value=84 Score=19.97 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.0
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
+.+|.+.+++++|.+.++.|.....+
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~ 37 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQS 37 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcC
Confidence 36899999999999999999766544
No 145
>PRK08818 prephenate dehydrogenase; Provisional
Probab=41.78 E-value=99 Score=29.80 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=33.3
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecC
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKD 229 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~ 229 (279)
.|+||.|++|+..|...|+++.+-.+......-. .|++.-.+
T Consensus 304 ~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y-~f~i~~~~ 345 (370)
T PRK08818 304 EDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGEL-HFRIGFEP 345 (370)
T ss_pred CCCCChHHHHHHHHHHcCcccceEEEecccCceE-EEEEEEec
Confidence 3999999999999999999999999954444433 38776554
No 146
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=40.65 E-value=98 Score=20.83 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
.++|...+|+++|++.|+.|....
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~ 35 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIP 35 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEe
Confidence 568999999999999999988774
No 147
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=39.88 E-value=1.1e+02 Score=20.43 Aligned_cols=26 Identities=8% Similarity=0.059 Sum_probs=22.0
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
+.++++.+++.+|.+.|+.|.-...+
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~ 38 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQG 38 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEec
Confidence 57899999999999999999666543
No 148
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=39.30 E-value=68 Score=31.18 Aligned_cols=44 Identities=9% Similarity=0.147 Sum_probs=36.7
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVL 225 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v 225 (279)
+-+.-.++||.+.+|..+|.+.|+.|-.-++...++..+-+|-+
T Consensus 341 lii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~ 384 (409)
T PRK11790 341 LLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV 384 (409)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe
Confidence 33677899999999999999999999888888888776655544
No 149
>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit. This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.
Probab=38.73 E-value=2e+02 Score=25.12 Aligned_cols=42 Identities=10% Similarity=0.173 Sum_probs=34.7
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEE
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVL 225 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v 225 (279)
+...|+||.+-+|...|-+.++.|-..+++.. ++.++-++.+
T Consensus 153 ~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v 196 (208)
T TIGR00719 153 LEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI 196 (208)
T ss_pred EEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence 55689999999999999999999999999864 5666555544
No 150
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.10 E-value=1.1e+02 Score=20.60 Aligned_cols=27 Identities=4% Similarity=0.005 Sum_probs=22.6
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEEe
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ist 214 (279)
+++|.+.+++++|.+.|++|.-...++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~ 39 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGA 39 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecC
Confidence 578999999999999999996655444
No 151
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=36.98 E-value=1.3e+02 Score=30.05 Aligned_cols=46 Identities=7% Similarity=-0.004 Sum_probs=36.7
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEE-E-EEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRI-K-SILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v-~-~~f~v~~~~ 229 (279)
+...+++|-|++++.+|+..|+.+++-..-...+.. . +.|+|....
T Consensus 36 FsL~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~Eg 83 (464)
T TIGR01270 36 FSLSNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVEL 83 (464)
T ss_pred EECCCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEEc
Confidence 445778999999999999999999999987764443 3 578886654
No 152
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=36.92 E-value=41 Score=20.78 Aligned_cols=17 Identities=35% Similarity=0.706 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023629 89 EKRRRDRINAQLATLRK 105 (279)
Q Consensus 89 Er~RR~~in~~~~~L~~ 105 (279)
=|+||+.++.++..||.
T Consensus 13 Lrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 13 LRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 46778889999998875
No 153
>PRK14637 hypothetical protein; Provisional
Probab=36.91 E-value=1.2e+02 Score=25.47 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
.+.-|....+-.+++++|++++...+..-++. ++-+| +-..++ ...+-+..+-++|..+|..
T Consensus 5 ~~~~~~~~~v~p~~~~~g~eLvdve~~~~~~~~~lrV~-ID~~~g----V~iddC~~vSr~Is~~LD~ 67 (151)
T PRK14637 5 KKDLGYFSECEPVVEGLGCKLVDLSRRVQQAQGRVRAV-IYSAGG----VGLDDCARVHRILVPRLEA 67 (151)
T ss_pred cccccHHHHHHHHHHhcCCEEEEEEEEecCCCcEEEEE-EECCCC----CCHHHHHHHHHHHHHHhcc
Confidence 34567788888899999999999999886664 55444 322222 1122233566777777754
No 154
>PRK06349 homoserine dehydrogenase; Provisional
Probab=36.06 E-value=2e+02 Score=28.05 Aligned_cols=36 Identities=11% Similarity=0.230 Sum_probs=29.3
Q ss_pred ceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe
Q 023629 177 DTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 177 ~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist 214 (279)
..+|+ +...++||.|.+|...|.+.++.|.+..-..
T Consensus 348 ~yylR--l~v~d~pGvLa~I~~~f~~~~vsI~si~q~~ 383 (426)
T PRK06349 348 KYYLR--LLVADKPGVLAKIAAIFAENGISIESILQKG 383 (426)
T ss_pred eEEEE--EEecCCcchHHHHHHHHhhcCccEEEEEecc
Confidence 35565 7788999999999999999999988665443
No 155
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=35.90 E-value=1.5e+02 Score=29.37 Aligned_cols=46 Identities=4% Similarity=0.051 Sum_probs=36.5
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC-CEEEEEEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVG-GRIKSILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~-~~v~~~f~v~~~~ 229 (279)
+...+++|-|++++.+|...|+.+++-..-... ..-.+.|+|...+
T Consensus 21 FsL~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 21 FSLKEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred EEcCCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 445788999999999999999999999887643 3345678887654
No 156
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.88 E-value=1.3e+02 Score=19.31 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=23.0
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
.+.+|.+.+++.+|.+.|+.|......
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~ 35 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQS 35 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEc
Confidence 567999999999999999999766543
No 157
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=33.16 E-value=1.8e+02 Score=20.55 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
.+.+|++.+++++|.+.++.+.-...+
T Consensus 12 ~~~~~~~~~i~~~L~~~~I~v~~i~~~ 38 (80)
T cd04921 12 VGVPGIAARIFSALARAGINVILISQA 38 (80)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEec
Confidence 357899999999999999999766554
No 158
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=32.80 E-value=1.8e+02 Score=20.65 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=21.8
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEE
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
.+.+|++.+++++|.+.|+.|....
T Consensus 12 ~~~~g~~~~if~~L~~~~I~v~~i~ 36 (75)
T cd04912 12 LGAHGFLAKVFEIFAKHGLSVDLIS 36 (75)
T ss_pred CCCccHHHHHHHHHHHcCCeEEEEE
Confidence 4578999999999999999997664
No 159
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=32.71 E-value=1.5e+02 Score=19.73 Aligned_cols=26 Identities=12% Similarity=0.247 Sum_probs=21.7
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
+.++++.+++++|.+.|+.|.-...+
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~ 38 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQG 38 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEec
Confidence 56899999999999999998655543
No 160
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=31.97 E-value=2e+02 Score=20.75 Aligned_cols=46 Identities=15% Similarity=0.259 Sum_probs=30.0
Q ss_pred cCceEEEecCceEEEEEEEcCCCcc------HHHHHHHHHHhcCCeeEEEEEEe
Q 023629 167 AGSSINKVKGDTLIKASVSCDDQPE------LYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 167 ~~v~V~~~~~~~~I~v~i~c~~r~g------lL~~Il~aLe~lgL~V~~a~ist 214 (279)
..|.+...++.+.|. +.++...- -+..+.++|...|+.+.+.++..
T Consensus 27 v~v~l~~~~~~l~v~--~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~ 78 (85)
T PF02120_consen 27 VEVKLRLQGGNLSVQ--FTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQ 78 (85)
T ss_dssp EEEEEEEETTEEEEE--EE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEES
T ss_pred EEEEEEEeCCEEEEE--EEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 445666667765554 77755322 27788999999999999888764
No 161
>PRK14630 hypothetical protein; Provisional
Probab=31.04 E-value=1.1e+02 Score=25.46 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCeeEEEEEEeeCC-EEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 194 KEIIRVLKGLGLTTVRADISSVGG-RIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 194 ~~Il~aLe~lgL~V~~a~ist~~~-~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
.-+-.+++++|++++......-++ .++-+ ++...++ ...+-+..+-++|...|..
T Consensus 12 ~li~~~~~~~G~eLvdve~~~~~~~~~lrV-~Id~~~g----V~idDC~~vSr~i~~~ld~ 67 (143)
T PRK14630 12 NLIKNVTDRLGIEIIEINTFRNRNEGKIQI-VLYKKDS----FGVDTLCDLHKMILLILEA 67 (143)
T ss_pred HHHHHHHHHcCCEEEEEEEEecCCCcEEEE-EEECCCC----CCHHHHHHHHHHHHHHhcc
Confidence 344556899999999999887554 44433 3433332 1122233566777777754
No 162
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.95 E-value=2.1e+02 Score=20.68 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=21.9
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEE
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
.+.+|++.+|+++|.+.|+.|-...
T Consensus 12 ~~~~g~~~~IF~~La~~~I~vDmI~ 36 (75)
T cd04935 12 WQQVGFLADVFAPFKKHGVSVDLVS 36 (75)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE
Confidence 4679999999999999999887764
No 163
>PRK15385 magnesium transport protein MgtC; Provisional
Probab=30.67 E-value=4e+02 Score=23.94 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=30.9
Q ss_pred eEEEEEEEcCCCcc--HHHHHHHHHHhcCCeeEEEEEEeeC
Q 023629 178 TLIKASVSCDDQPE--LYKEIIRVLKGLGLTTVRADISSVG 216 (279)
Q Consensus 178 ~~I~v~i~c~~r~g--lL~~Il~aLe~lgL~V~~a~ist~~ 216 (279)
....+++.|.+..+ +...+++.|++.++.+.+.++...+
T Consensus 141 ~~~~~~v~~~~~~~~~vr~~L~~~l~~~~~~~~~l~~~~~~ 181 (225)
T PRK15385 141 KRYILKVTCNKEDESAVRQWLLNIVKEAAICLQGLGSVPAQ 181 (225)
T ss_pred eEEEEEEEEcCcchhHHHHHHHHHHHhCCCceEEeEeeecC
Confidence 34456688977665 5889999999999999999997653
No 164
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.47 E-value=1.6e+02 Score=19.29 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=21.5
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRADI 212 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~i 212 (279)
+.+|++.+++.+|.+.++.|.....
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMIST 36 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEc
Confidence 5689999999999999999976653
No 165
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=29.69 E-value=79 Score=26.29 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=31.1
Q ss_pred ccHHHHHHH--HHHHHHHHHHHhcCCCCCcCchhhHHHHHHH--HHHHHHHHHHHHhhhcC
Q 023629 85 HSQAEKRRR--DRINAQLATLRKLIPKSEKMDKAALLGSAIE--HVKDLKLKAMEVSKTLT 141 (279)
Q Consensus 85 h~~~Er~RR--~~in~~~~~L~~lvP~~~k~dkasil~~ai~--yik~L~~~~~~l~~~~~ 141 (279)
-...||+|| .+-.+.+..|-.| |..+|...+. .+..|+..++++.....
T Consensus 61 dd~~eRRrRav~Rg~~~LD~Ld~L--------k~aLL~G~~~~~~L~~L~~~~~e~r~~s~ 113 (138)
T PRK12787 61 EDPTERRRRSVRRGETALDVLDEL--------KIGLLSGTLDAATLARLRRAVRELRAASG 113 (138)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHH--------HHHHHcCCCCHHHHHHHHHHHHHhccCCC
Confidence 356788888 3344555555554 6677777766 66777777777654433
No 166
>PF10465 Inhibitor_I24: PinA peptidase inhibitor ; InterPro: IPR019506 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. PinA inhibits the endopeptidase La. It binds to the La homotetramer but does not interfere with the ATP binding site or the active site of La.
Probab=28.10 E-value=90 Score=25.44 Aligned_cols=37 Identities=24% Similarity=0.244 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCCCCcCchhhHHHHHHHHHHHHHHHH
Q 023629 95 RINAQLATLRKLIPKSEKMDKAALLGSAIEHVKDLKLKA 133 (279)
Q Consensus 95 ~in~~~~~L~~lvP~~~k~dkasil~~ai~yik~L~~~~ 133 (279)
+|...+..|..- ....---..+++.|.+||.+|+.|+
T Consensus 103 rIsyaL~K~A~q--en~D~yEgnLMQAAAeYIewLE~ql 139 (140)
T PF10465_consen 103 RISYALAKLAAQ--ENNDGYEGNLMQAAAEYIEWLETQL 139 (140)
T ss_pred chHHHHHHHHhh--hcCCcchhhHHHHHHHHHHHHHhhc
Confidence 466666655442 1112235678999999999999875
No 167
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.88 E-value=79 Score=23.26 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 023629 118 LLGSAIEHVKDLKLKAMEVSKTLT 141 (279)
Q Consensus 118 il~~ai~yik~L~~~~~~l~~~~~ 141 (279)
-+..||+-|.-||-++++|+++..
T Consensus 12 KiqqAvdTI~LLQmEieELKEknn 35 (79)
T COG3074 12 KVQQAIDTITLLQMEIEELKEKNN 35 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 367899999999999999987653
No 168
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=25.77 E-value=2e+02 Score=18.81 Aligned_cols=26 Identities=12% Similarity=0.245 Sum_probs=21.9
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEEE
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRADI 212 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~i 212 (279)
.+.+|++.+++.+|.+.++.|.....
T Consensus 11 ~~~~~~~~~i~~~L~~~~i~v~~i~~ 36 (63)
T cd04936 11 RSHPGVAAKMFEALAEAGINIEMIST 36 (63)
T ss_pred CCCccHHHHHHHHHHHCCCcEEEEEc
Confidence 35689999999999999999976653
No 169
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.48 E-value=2.3e+02 Score=19.46 Aligned_cols=23 Identities=9% Similarity=-0.021 Sum_probs=18.9
Q ss_pred CCccHHHHHHHHHHhcCCeeEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRA 210 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a 210 (279)
..+|++.+++++|.+.++.++..
T Consensus 12 ~~~gv~~~~~~~L~~~~i~~i~~ 34 (63)
T cd04920 12 SLLHKLGPALEVFGKKPVHLVSQ 34 (63)
T ss_pred cCccHHHHHHHHHhcCCceEEEE
Confidence 57899999999999987776443
No 170
>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]
Probab=25.04 E-value=1.3e+02 Score=27.85 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=34.4
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEE--EEEEEecC
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKS--ILVLCNKD 229 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~--~f~v~~~~ 229 (279)
+.-.+.||+|.+|.-+|..-|..|-+--+--.....+. +++++-.+
T Consensus 82 clVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd 129 (309)
T KOG2663|consen 82 CLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTD 129 (309)
T ss_pred EEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccH
Confidence 55578999999999999999999887776655555554 66665443
No 171
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=24.16 E-value=93 Score=30.46 Aligned_cols=33 Identities=24% Similarity=0.428 Sum_probs=30.0
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
+++|+|++|-|+.-+++..|-.-++++-...|-
T Consensus 2 RleV~cedRlGltrelLdlLv~r~idl~~iEid 34 (511)
T COG3283 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEID 34 (511)
T ss_pred ceEEEehhhhchHHHHHHHHHhcccCccceeec
Confidence 467999999999999999999999999888884
No 172
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.01 E-value=3e+02 Score=20.23 Aligned_cols=25 Identities=12% Similarity=0.223 Sum_probs=21.9
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEE
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
.+.+|.+.+|+++|.+.|+.|--..
T Consensus 12 ~~~~g~~a~IF~~La~~~InVDmI~ 36 (78)
T cd04933 12 LGQYGFLAKVFSIFETLGISVDVVA 36 (78)
T ss_pred CCccCHHHHHHHHHHHcCCcEEEEE
Confidence 4679999999999999999887764
No 173
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=23.42 E-value=4e+02 Score=29.28 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=39.1
Q ss_pred EcCCCccHHHHHHHHHHhcCCeeEEEEEEee-CCEEEEEEEEEecCC
Q 023629 185 SCDDQPELYKEIIRVLKGLGLTTVRADISSV-GGRIKSILVLCNKDA 230 (279)
Q Consensus 185 ~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-~~~v~~~f~v~~~~~ 230 (279)
.-....|+|+.|.+.+.-+||.+.++-+-+| +|....+|+|....+
T Consensus 239 r~~~~~~~~s~~~~~~~~~~l~~~R~Y~e~fsngv~i~s~yv~~~~~ 285 (1002)
T PTZ00324 239 RRYYTASFFSRFGEIVTFHGAYSMSKYVEPFSNGVQVYTFFIRGLTA 285 (1002)
T ss_pred cCCcHhhHHHHHHHHHHhcCCccceEEEEEeeCCcEEEEEEEecCCC
Confidence 3455678999999999999999999999998 666888999986654
No 174
>PRK13702 replication protein; Provisional
Probab=23.23 E-value=1.8e+02 Score=22.19 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=22.4
Q ss_pred hhccccHHHHHHH--HHHHHHHHHHHhcCCCC
Q 023629 81 VSKSHSQAEKRRR--DRINAQLATLRKLIPKS 110 (279)
Q Consensus 81 ~~~~h~~~Er~RR--~~in~~~~~L~~lvP~~ 110 (279)
+-.+...+||+|. .+..+-.++|.-.||+.
T Consensus 20 KG~Pls~aErQr~svaRKr~THkei~vfi~n~ 51 (85)
T PRK13702 20 KGNPLSAAEKQRASVARKRATHKEIKVFIQNP 51 (85)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhheeecHH
Confidence 3457788999987 56667788888888853
No 175
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=22.78 E-value=3e+02 Score=19.77 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=21.1
Q ss_pred CCccHHHHHHHHHHhcCCeeEEEE
Q 023629 188 DQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 188 ~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
..+|.+.+|+++|.+.|+.|-...
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~ 36 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLIS 36 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEE
Confidence 468999999999999999887764
No 176
>PRK06545 prephenate dehydrogenase; Validated
Probab=22.54 E-value=2.1e+02 Score=27.06 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=38.1
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKD 229 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~ 229 (279)
|.|.-+|+||.+.+|+..|-+.|+.|.+..|.-.-+....++.+....
T Consensus 293 ~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~~~ 340 (359)
T PRK06545 293 LYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISFKN 340 (359)
T ss_pred EEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEeCC
Confidence 446668999999999999999999999999976555655666664443
No 177
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=22.40 E-value=2.2e+02 Score=28.59 Aligned_cols=42 Identities=17% Similarity=0.359 Sum_probs=33.3
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEe--eCCEEEEEEEE
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISS--VGGRIKSILVL 225 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist--~~~~v~~~f~v 225 (279)
+...|+||.+..|...|-+.++.|-..+++. -|+..+-++.+
T Consensus 457 ~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~ 500 (526)
T PRK13581 457 IRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSV 500 (526)
T ss_pred EEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEEC
Confidence 4568999999999999999999998888876 45665555444
No 178
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=21.87 E-value=1.2e+02 Score=22.19 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 023629 119 LGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 119 l~~ai~yik~L~~~~~~l~~~~ 140 (279)
+..||+-|.-||.++++|+.+.
T Consensus 13 i~~aveti~~Lq~e~eeLke~n 34 (72)
T PF06005_consen 13 IQQAVETIALLQMENEELKEKN 34 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999998753
No 179
>PRK14633 hypothetical protein; Provisional
Probab=21.50 E-value=4.5e+02 Score=21.84 Aligned_cols=54 Identities=11% Similarity=0.144 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 195 EIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 195 ~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
-+-.+++++|++++...+..-++.++-+|+ ...+| ...+-+..+-++|..+|+.
T Consensus 9 lv~p~~~~~G~eL~dve~~~~~~~~lrV~I-D~~~G----v~lddC~~vSr~i~~~LD~ 62 (150)
T PRK14633 9 IVEPITADLGYILWGIEVVGSGKLTIRIFI-DHENG----VSVDDCQIVSKEISAVFDV 62 (150)
T ss_pred HHHHHHHHCCCEEEEEEEEeCCCcEEEEEE-eCCCC----CCHHHHHHHHHHHHHHhcc
Confidence 455678999999999999877666554443 22222 1222233677888888874
No 180
>PRK08639 threonine dehydratase; Validated
Probab=20.74 E-value=5.4e+02 Score=24.94 Aligned_cols=35 Identities=14% Similarity=0.091 Sum_probs=26.7
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
.+++.+.-++|||-|.++++.+-..+-+|+..+..
T Consensus 336 ~~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~~~ 370 (420)
T PRK08639 336 KHYFIVNFPQRPGALREFLDDVLGPNDDITRFEYL 370 (420)
T ss_pred EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEEe
Confidence 34556888999999999999666665588776554
No 181
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=20.58 E-value=4.6e+02 Score=30.34 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=26.1
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRA 210 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a 210 (279)
|+|.++|.|.|+-.|..+|..+|+.|...
T Consensus 20 I~IV~dDmPFLVDSV~~~L~r~gl~I~~i 48 (1528)
T PF05088_consen 20 IEIVTDDMPFLVDSVRMELNRQGLTIHLI 48 (1528)
T ss_pred EEEEcCCCCcHHHHHHHHHHhCCCceEEE
Confidence 56999999999999999999999997654
No 182
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=20.32 E-value=6.9e+02 Score=24.14 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=27.7
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS 213 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is 213 (279)
+++.+.-++|||-|.++++.+-..+.+|+..+.-
T Consensus 326 ~~~~v~ipdrPGaL~~~l~~i~~~~~NI~~~~y~ 359 (409)
T TIGR02079 326 HYFIVRFPQRPGALREFLNDVLGPNDDITRFEYT 359 (409)
T ss_pred EEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEee
Confidence 4556888999999999999777777788877665
No 183
>PRK14639 hypothetical protein; Provisional
Probab=20.26 E-value=3e+02 Score=22.65 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 196 IIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 196 Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
+-.+++++|++++...+..-++.-+-.+++...++ ....-++.+-++|..+|..
T Consensus 3 ~ep~~~~~G~eLvdve~~~~~~~~~lrV~Id~~~g----v~iddC~~vSr~is~~LD~ 56 (140)
T PRK14639 3 LEALCKECGVSFYDDELVSENGRKIYRVYITKEGG----VNLDDCERLSELLSPIFDV 56 (140)
T ss_pred hhHhHHhCCCEEEEEEEEecCCCcEEEEEEeCCCC----CCHHHHHHHHHHHHHHhcc
Confidence 44678999999999999986664333344432222 1122233677888888874
No 184
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=20.24 E-value=6e+02 Score=25.43 Aligned_cols=31 Identities=13% Similarity=0.194 Sum_probs=23.6
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEe
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISS 214 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist 214 (279)
+.+.-++|||-|.+++++|-. .+|+..+..-
T Consensus 328 l~V~iPerPGal~~f~~~i~~--~nItef~yr~ 358 (499)
T TIGR01124 328 LAVTIPEQPGSFLKFCELLGN--RNITEFNYRY 358 (499)
T ss_pred EEEEeCCCCCHHHHHHHHhhh--cceEEEEEEe
Confidence 448889999999999999987 3555555443
Done!