Query 023629
Match_columns 279
No_of_seqs 287 out of 1581
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:05:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023629.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023629hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 9.3E-17 3.2E-21 120.6 6.8 63 78-140 3-66 (82)
2 4h10_B Circadian locomoter out 99.7 1E-16 3.5E-21 116.7 6.6 62 76-137 3-65 (71)
3 4ati_A MITF, microphthalmia-as 99.6 1.1E-15 3.7E-20 122.3 7.4 67 74-140 20-90 (118)
4 1a0a_A BHLH, protein (phosphat 99.6 1.4E-16 4.8E-21 113.8 1.4 54 81-134 2-62 (63)
5 1an4_A Protein (upstream stimu 99.6 3.4E-16 1.2E-20 112.4 2.6 55 80-134 4-64 (65)
6 4h10_A ARYL hydrocarbon recept 99.6 9.3E-16 3.2E-20 112.5 3.3 57 76-132 4-64 (73)
7 1hlo_A Protein (transcription 99.6 4.2E-15 1.4E-19 111.0 5.9 64 77-140 8-73 (80)
8 1nkp_B MAX protein, MYC proto- 99.5 1.1E-14 3.8E-19 109.4 6.8 60 81-140 2-63 (83)
9 1nkp_A C-MYC, MYC proto-oncoge 99.5 3.1E-14 1E-18 108.2 6.6 60 80-139 5-67 (88)
10 3u5v_A Protein MAX, transcript 99.5 4.9E-14 1.7E-18 104.1 4.8 59 80-138 4-66 (76)
11 1nlw_A MAD protein, MAX dimeri 99.4 3.2E-13 1.1E-17 100.8 7.1 59 82-140 2-63 (80)
12 2ql2_B Neurod1, neurogenic dif 99.2 2.1E-11 7E-16 86.0 5.6 54 81-134 2-58 (60)
13 1mdy_A Protein (MYOD BHLH doma 99.2 2.1E-11 7.2E-16 88.1 5.2 55 79-133 10-66 (68)
14 4f3l_A Mclock, circadian locom 99.1 7.9E-11 2.7E-15 110.0 5.9 59 75-133 6-65 (361)
15 4f3l_B BMAL1B; BHLH, PAS, circ 99.0 2.4E-10 8E-15 108.0 5.2 59 75-133 7-69 (387)
16 4ath_A MITF, microphthalmia-as 98.9 3.2E-09 1.1E-13 78.8 6.0 47 93-139 4-54 (83)
17 2lfh_A DNA-binding protein inh 98.7 2.3E-09 8E-14 76.6 1.0 46 86-131 19-67 (68)
18 4aya_A DNA-binding protein inh 98.2 3.2E-06 1.1E-10 64.6 6.3 50 88-137 32-84 (97)
19 1zpv_A ACT domain protein; str 97.6 0.0012 4.2E-08 48.6 11.9 67 180-253 6-72 (91)
20 1u8s_A Glycine cleavage system 97.1 0.0026 8.9E-08 53.6 9.9 64 182-253 9-72 (192)
21 2nyi_A Unknown protein; protei 97.0 0.0027 9.2E-08 54.0 9.1 46 181-226 7-52 (195)
22 2ko1_A CTR148A, GTP pyrophosph 97.0 0.0032 1.1E-07 45.7 8.2 50 178-227 4-53 (88)
23 2nyi_A Unknown protein; protei 96.8 0.0028 9.5E-08 53.9 7.6 71 181-255 95-167 (195)
24 1u8s_A Glycine cleavage system 96.6 0.012 4.1E-07 49.4 9.8 75 179-256 93-171 (192)
25 3p96_A Phosphoserine phosphata 94.5 0.12 4E-06 48.3 8.7 69 182-256 15-83 (415)
26 2jhe_A Transcription regulator 94.3 0.14 4.7E-06 41.4 7.6 35 181-215 2-36 (190)
27 3n0v_A Formyltetrahydrofolate 94.1 0.34 1.2E-05 43.6 10.4 68 182-256 11-80 (286)
28 3o1l_A Formyltetrahydrofolate 94.1 0.4 1.4E-05 43.5 10.9 69 182-256 25-95 (302)
29 3obi_A Formyltetrahydrofolate 93.5 0.41 1.4E-05 43.1 9.8 69 182-256 9-79 (288)
30 2f1f_A Acetolactate synthase i 92.9 0.19 6.6E-06 41.6 6.2 45 182-226 6-52 (164)
31 3lou_A Formyltetrahydrofolate 92.8 0.52 1.8E-05 42.5 9.4 71 182-256 13-85 (292)
32 2pc6_A Probable acetolactate s 91.8 0.25 8.4E-06 41.0 5.5 45 182-226 7-53 (165)
33 3nrb_A Formyltetrahydrofolate 90.5 1.3 4.5E-05 39.8 9.4 67 182-256 10-78 (287)
34 1y7p_A Hypothetical protein AF 89.7 0.6 2E-05 40.5 6.2 37 180-216 5-41 (223)
35 2fgc_A Acetolactate synthase, 88.1 0.81 2.8E-05 38.9 5.8 46 181-226 31-78 (193)
36 2f06_A Conserved hypothetical 77.5 8.6 0.0003 29.9 7.6 40 184-223 77-116 (144)
37 2qmx_A Prephenate dehydratase; 73.1 10 0.00036 33.8 7.7 45 186-230 207-252 (283)
38 3luy_A Probable chorismate mut 71.7 32 0.0011 31.2 10.8 44 187-230 216-260 (329)
39 2f06_A Conserved hypothetical 70.0 15 0.00052 28.4 7.3 35 181-215 8-42 (144)
40 3mwb_A Prephenate dehydratase; 68.4 13 0.00045 33.6 7.4 47 184-230 206-254 (313)
41 2qmw_A PDT, prephenate dehydra 58.5 29 0.00098 30.6 7.5 42 187-228 197-239 (267)
42 1sc6_A PGDH, D-3-phosphoglycer 51.7 60 0.0021 30.1 8.9 44 182-225 334-377 (404)
43 3muj_A Transcription factor CO 48.5 24 0.00081 28.2 4.7 35 95-129 95-133 (138)
44 3dhx_A Methionine import ATP-b 48.0 81 0.0028 23.3 8.1 52 178-230 22-74 (106)
45 3s1t_A Aspartokinase; ACT doma 45.8 60 0.0021 26.4 7.1 53 174-227 13-68 (181)
46 2dt9_A Aspartokinase; protein- 44.3 66 0.0023 25.5 7.1 51 175-227 14-68 (167)
47 2dtj_A Aspartokinase; protein- 42.9 83 0.0028 25.3 7.5 41 174-215 12-52 (178)
48 1ygy_A PGDH, D-3-phosphoglycer 40.2 1.1E+02 0.0037 29.3 8.9 42 184-225 459-502 (529)
49 2re1_A Aspartokinase, alpha an 38.3 1.2E+02 0.004 24.0 7.7 30 182-211 106-138 (167)
50 1p3q_Q VPS9P, vacuolar protein 36.7 51 0.0018 21.9 4.2 26 87-112 3-28 (54)
51 2qsw_A Methionine import ATP-b 35.1 1.3E+02 0.0043 21.8 9.9 51 178-229 24-75 (100)
52 2re1_A Aspartokinase, alpha an 34.0 1.2E+02 0.004 24.0 7.0 50 174-225 22-73 (167)
53 2wt7_A Proto-oncogene protein 33.7 81 0.0028 21.2 5.0 17 89-105 1-17 (63)
54 4go7_X Aspartokinase; transfer 33.0 86 0.0029 26.2 6.2 54 174-228 32-88 (200)
55 1phz_A Protein (phenylalanine 32.4 54 0.0019 31.0 5.2 45 184-228 39-84 (429)
56 2dtj_A Aspartokinase; protein- 32.2 1.9E+02 0.0066 23.0 9.4 59 182-254 98-159 (178)
57 1xkm_B Distinctin chain B; por 32.1 59 0.002 17.8 3.2 20 117-136 4-23 (26)
58 3mtj_A Homoserine dehydrogenas 29.1 52 0.0018 31.1 4.5 33 177-211 359-391 (444)
59 3s1t_A Aspartokinase; ACT doma 29.1 2.3E+02 0.0077 22.8 9.2 61 182-256 99-162 (181)
60 2qrr_A Methionine import ATP-b 27.7 1.7E+02 0.0059 21.0 8.7 51 178-229 24-75 (101)
61 3fx7_A Putative uncharacterize 26.3 98 0.0034 22.9 4.7 22 119-140 65-86 (94)
62 1pd7_B MAD1; PAH2, SIN3, eukar 24.3 91 0.0031 17.5 3.1 20 113-132 2-21 (26)
63 2dt9_A Aspartokinase; protein- 24.0 1.4E+02 0.0048 23.5 5.8 29 182-210 98-129 (167)
64 3k5p_A D-3-phosphoglycerate de 22.9 2E+02 0.007 26.7 7.3 46 180-225 344-389 (416)
65 2jee_A YIIU; FTSZ, septum, coi 21.8 72 0.0025 23.0 3.1 23 118-140 14-36 (81)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.66 E-value=9.3e-17 Score=120.64 Aligned_cols=63 Identities=25% Similarity=0.392 Sum_probs=58.2
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC-CcCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 78 ATAVSKSHSQAEKRRRDRINAQLATLRKLIPKS-EKMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 78 ~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~-~k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
...++.+|+.+||+||++||++|.+|++|||.. .|+||++||.+||+||++|+.+++.|+.+.
T Consensus 3 ~~~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~ 66 (82)
T 1am9_A 3 RGEKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQEN 66 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999999999999986 899999999999999999999999998754
No 2
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.66 E-value=1e-16 Score=116.71 Aligned_cols=62 Identities=29% Similarity=0.476 Sum_probs=55.8
Q ss_pred hhhhhhhccccHHHHHHHHHHHHHHHHHHhcCCC-CCcCchhhHHHHHHHHHHHHHHHHHHHh
Q 023629 76 DRATAVSKSHSQAEKRRRDRINAQLATLRKLIPK-SEKMDKAALLGSAIEHVKDLKLKAMEVS 137 (279)
Q Consensus 76 ~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~-~~k~dkasil~~ai~yik~L~~~~~~l~ 137 (279)
.+...++.+|+++||+||++||++|.+|++|||. ..|+||++||.+||+||++||+++.=|+
T Consensus 3 ~k~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 3 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4567788999999999999999999999999996 4699999999999999999999887654
No 3
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.60 E-value=1.1e-15 Score=122.31 Aligned_cols=67 Identities=25% Similarity=0.423 Sum_probs=51.8
Q ss_pred hhhhhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCCC----cCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 74 AEDRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKSE----KMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 74 ~~~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~~----k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
...+...++.+|+.+||+||++||++|.+|++|||.+. |++|++||.+||+||++||++++.|....
T Consensus 20 ~~~k~~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 20 ALAKERQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678899999999999999999999999999753 67899999999999999999999998654
No 4
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.60 E-value=1.4e-16 Score=113.77 Aligned_cols=54 Identities=31% Similarity=0.449 Sum_probs=48.7
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCC-------CCcCchhhHHHHHHHHHHHHHHHHH
Q 023629 81 VSKSHSQAEKRRRDRINAQLATLRKLIPK-------SEKMDKAALLGSAIEHVKDLKLKAM 134 (279)
Q Consensus 81 ~~~~h~~~Er~RR~~in~~~~~L~~lvP~-------~~k~dkasil~~ai~yik~L~~~~~ 134 (279)
++.+|+++||+||++||..|.+|++|||. ..+.+||+||+.||+||++||++++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~~ 62 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNGS 62 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCSC
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999999999999994 3577899999999999999998753
No 5
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=3.4e-16 Score=112.44 Aligned_cols=55 Identities=31% Similarity=0.532 Sum_probs=49.9
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCCC------cCchhhHHHHHHHHHHHHHHHHH
Q 023629 80 AVSKSHSQAEKRRRDRINAQLATLRKLIPKSE------KMDKAALLGSAIEHVKDLKLKAM 134 (279)
Q Consensus 80 ~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~~------k~dkasil~~ai~yik~L~~~~~ 134 (279)
.++.+|+.+||+||++||+.|.+|++|||... |++|++||.+||+||++||++.+
T Consensus 4 ~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~~ 64 (65)
T 1an4_A 4 KRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64 (65)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTTC
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 46779999999999999999999999999654 78999999999999999998653
No 6
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.56 E-value=9.3e-16 Score=112.47 Aligned_cols=57 Identities=39% Similarity=0.626 Sum_probs=51.0
Q ss_pred hhhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC----CcCchhhHHHHHHHHHHHHHHH
Q 023629 76 DRATAVSKSHSQAEKRRRDRINAQLATLRKLIPKS----EKMDKAALLGSAIEHVKDLKLK 132 (279)
Q Consensus 76 ~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~----~k~dkasil~~ai~yik~L~~~ 132 (279)
.+..+++.+|+.+||+||++||+.|.+|++|||.+ .|+||++||+.||+||+.|+.-
T Consensus 4 ~k~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~~ 64 (73)
T 4h10_A 4 GRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 64 (73)
T ss_dssp -CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhcC
Confidence 35567788999999999999999999999999964 7999999999999999999753
No 7
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.55 E-value=4.2e-15 Score=111.05 Aligned_cols=64 Identities=25% Similarity=0.420 Sum_probs=58.2
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHhcCCCC--CcCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 77 RATAVSKSHSQAEKRRRDRINAQLATLRKLIPKS--EKMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 77 ~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~--~k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
....++.+|+.+||+||.+||+.|..|+++||.. .|++|++||..||+||++|++++++|+.+.
T Consensus 8 ~~~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~ 73 (80)
T 1hlo_A 8 SDADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 73 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999964 699999999999999999999999998754
No 8
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.53 E-value=1.1e-14 Score=109.40 Aligned_cols=60 Identities=27% Similarity=0.463 Sum_probs=54.9
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCC--CCcCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 81 VSKSHSQAEKRRRDRINAQLATLRKLIPK--SEKMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 81 ~~~~h~~~Er~RR~~in~~~~~L~~lvP~--~~k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
++.+|+.+||+||++||+.|..|+++||. ..|++|++||..||+||++|+++++.|+.+.
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~ 63 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDI 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999996 4799999999999999999999999887643
No 9
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.49 E-value=3.1e-14 Score=108.21 Aligned_cols=60 Identities=22% Similarity=0.376 Sum_probs=54.6
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 023629 80 AVSKSHSQAEKRRRDRINAQLATLRKLIPKS---EKMDKAALLGSAIEHVKDLKLKAMEVSKT 139 (279)
Q Consensus 80 ~~~~~h~~~Er~RR~~in~~~~~L~~lvP~~---~k~dkasil~~ai~yik~L~~~~~~l~~~ 139 (279)
.++..|+..||+||+.||++|..|+.+||.. .|++|++||..||+||+.|+.+.+.+...
T Consensus 5 ~~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~ 67 (88)
T 1nkp_A 5 VKRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISE 67 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999999999999999999964 59999999999999999999998887543
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.45 E-value=4.9e-14 Score=104.13 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=49.6
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHhcCCC---CCcC-chhhHHHHHHHHHHHHHHHHHHHhh
Q 023629 80 AVSKSHSQAEKRRRDRINAQLATLRKLIPK---SEKM-DKAALLGSAIEHVKDLKLKAMEVSK 138 (279)
Q Consensus 80 ~~~~~h~~~Er~RR~~in~~~~~L~~lvP~---~~k~-dkasil~~ai~yik~L~~~~~~l~~ 138 (279)
.++.+|+..||+||..||+.|.+|+.+||. ..|. +|++||..||+||+.|++++++++.
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~~ 66 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERNL 66 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 356789999999999999999999999994 4455 7999999999999999999999864
No 11
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.42 E-value=3.2e-13 Score=100.77 Aligned_cols=59 Identities=25% Similarity=0.412 Sum_probs=53.4
Q ss_pred hccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCchhhHHHHHHHHHHHHHHHHHHHhhhc
Q 023629 82 SKSHSQAEKRRRDRINAQLATLRKLIPKS---EKMDKAALLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 82 ~~~h~~~Er~RR~~in~~~~~L~~lvP~~---~k~dkasil~~ai~yik~L~~~~~~l~~~~ 140 (279)
+..||..||+||..||+.|..|+++||.. .|.+|++||..|++||+.|+.+.+.+..+.
T Consensus 2 R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~ 63 (80)
T 1nlw_A 2 RSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQI 63 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999954 688899999999999999999999887643
No 12
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.19 E-value=2.1e-11 Score=86.03 Aligned_cols=54 Identities=26% Similarity=0.263 Sum_probs=48.7
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHhcCCCC---CcCchhhHHHHHHHHHHHHHHHHH
Q 023629 81 VSKSHSQAEKRRRDRINAQLATLRKLIPKS---EKMDKAALLGSAIEHVKDLKLKAM 134 (279)
Q Consensus 81 ~~~~h~~~Er~RR~~in~~~~~L~~lvP~~---~k~dkasil~~ai~yik~L~~~~~ 134 (279)
++..|+..||+|+..||+.|..||.+||.. .|++|..+|..||+||..|++.++
T Consensus 2 rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 2 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 456799999999999999999999999954 489999999999999999998764
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.18 E-value=2.1e-11 Score=88.05 Aligned_cols=55 Identities=22% Similarity=0.389 Sum_probs=49.5
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHhcCCC--CCcCchhhHHHHHHHHHHHHHHHH
Q 023629 79 TAVSKSHSQAEKRRRDRINAQLATLRKLIPK--SEKMDKAALLGSAIEHVKDLKLKA 133 (279)
Q Consensus 79 ~~~~~~h~~~Er~RR~~in~~~~~L~~lvP~--~~k~dkasil~~ai~yik~L~~~~ 133 (279)
..++..|+..||+|+..||+.|..||.+||. ..|++|..||..||+||..|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999995 358999999999999999999765
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.08 E-value=7.9e-11 Score=110.03 Aligned_cols=59 Identities=31% Similarity=0.555 Sum_probs=43.2
Q ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHhcCC-CCCcCchhhHHHHHHHHHHHHHHHH
Q 023629 75 EDRATAVSKSHSQAEKRRRDRINAQLATLRKLIP-KSEKMDKAALLGSAIEHVKDLKLKA 133 (279)
Q Consensus 75 ~~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP-~~~k~dkasil~~ai~yik~L~~~~ 133 (279)
+.|...++.+|+.+||+||++||..|.+|++||| ...|+||++||..||+|||.|+...
T Consensus 6 ~~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~~ 65 (361)
T 4f3l_A 6 DDKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKETT 65 (361)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhhc
Confidence 4456677889999999999999999999999999 5679999999999999999998653
No 15
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.99 E-value=2.4e-10 Score=107.98 Aligned_cols=59 Identities=39% Similarity=0.621 Sum_probs=50.6
Q ss_pred hhhhhhhhccccHHHHHHHHHHHHHHHHHHhcCC----CCCcCchhhHHHHHHHHHHHHHHHH
Q 023629 75 EDRATAVSKSHSQAEKRRRDRINAQLATLRKLIP----KSEKMDKAALLGSAIEHVKDLKLKA 133 (279)
Q Consensus 75 ~~~~~~~~~~h~~~Er~RR~~in~~~~~L~~lvP----~~~k~dkasil~~ai~yik~L~~~~ 133 (279)
..|...++.+|+.+||+||++||+.|.+|++||| ...|+||++||..||+|||.|+...
T Consensus 7 ~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~~ 69 (387)
T 4f3l_B 7 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGAT 69 (387)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC-
T ss_pred cchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhccc
Confidence 3455677889999999999999999999999999 6789999999999999999998543
No 16
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.86 E-value=3.2e-09 Score=78.84 Aligned_cols=47 Identities=26% Similarity=0.448 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCC----CcCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 023629 93 RDRINAQLATLRKLIPKS----EKMDKAALLGSAIEHVKDLKLKAMEVSKT 139 (279)
Q Consensus 93 R~~in~~~~~L~~lvP~~----~k~dkasil~~ai~yik~L~~~~~~l~~~ 139 (279)
|++||++|.+|.+|||.+ .|.+|++||..||+||++||++++.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999964 37899999999999999999998887654
No 17
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.71 E-value=2.3e-09 Score=76.64 Aligned_cols=46 Identities=22% Similarity=0.407 Sum_probs=41.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCCC---CcCchhhHHHHHHHHHHHHHH
Q 023629 86 SQAEKRRRDRINAQLATLRKLIPKS---EKMDKAALLGSAIEHVKDLKL 131 (279)
Q Consensus 86 ~~~Er~RR~~in~~~~~L~~lvP~~---~k~dkasil~~ai~yik~L~~ 131 (279)
+..||+|+..||+.|..||.+||.. .|++|..+|..||+||..||.
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999953 589999999999999999984
No 18
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.17 E-value=3.2e-06 Score=64.61 Aligned_cols=50 Identities=20% Similarity=0.293 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---CCcCchhhHHHHHHHHHHHHHHHHHHHh
Q 023629 88 AEKRRRDRINAQLATLRKLIPK---SEKMDKAALLGSAIEHVKDLKLKAMEVS 137 (279)
Q Consensus 88 ~Er~RR~~in~~~~~L~~lvP~---~~k~dkasil~~ai~yik~L~~~~~~l~ 137 (279)
.||.|-..+|+.|..||.+||. ..|++|..+|..||+||..|++-++.-.
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~~~ 84 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDSHL 84 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3567778899999999999995 3588999999999999999999887643
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=97.60 E-value=0.0012 Score=48.58 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=52.4
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
+.+.+.|.||||+|.+|..+|.+.|..|.+.+..+..+.+.-.+.+...+. ..+. .|.++|..+-..
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~------~~l~-~l~~~L~~~~~~ 72 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEK------QDFT-YLRNEFEAFGQT 72 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSC------CCHH-HHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCC------CCHH-HHHHHHHHHHHH
Confidence 446699999999999999999999999999999888787766666644331 3445 778888776544
No 20
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=97.13 E-value=0.0026 Score=53.60 Aligned_cols=64 Identities=16% Similarity=0.383 Sum_probs=51.4
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhh
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSR 253 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k 253 (279)
|.|.|+||||+++.|..+|.+.|++|+.+++.+..+.+.-.+.+... . ..+. .|+++|..++.+
T Consensus 9 itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~-----~--~~~~-~l~~~L~~~~~~ 72 (192)
T 1u8s_A 9 ITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS-----P--SNIT-RVETTLPLLGQQ 72 (192)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC-----H--HHHH-HHHHHHHHHHHH
T ss_pred EEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecC-----C--CCHH-HHHHHHHHHHHh
Confidence 56999999999999999999999999999999888887667766422 1 2334 788888877654
No 21
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=97.03 E-value=0.0027 Score=53.97 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=40.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEE
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLC 226 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~ 226 (279)
.|.|.|.||||+++.|..+|.++|++|+.+++.+..+.+.-.+.+.
T Consensus 7 ~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~ 52 (195)
T 2nyi_A 7 VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVS 52 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEE
Confidence 3669999999999999999999999999999998877765566664
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=97.00 E-value=0.0032 Score=45.67 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=39.8
Q ss_pred eEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEe
Q 023629 178 TLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCN 227 (279)
Q Consensus 178 ~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~ 227 (279)
+.+.+.+.+.|+||+|.+|..+|.+.|+.|.+.++.+.++.+...|.+..
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 34556688999999999999999999999999999887764444444433
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=96.84 E-value=0.0028 Score=53.87 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=50.6
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhcc
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMS 255 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~ 255 (279)
.|+|.|.||||+++.|..+|.++|++|..++..+.+ .+..+.|++...-+. ..... . .|+++|..+..+..
T Consensus 95 iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~--~~~~~-~-~l~~~l~~~a~~l~ 167 (195)
T 2nyi_A 95 ELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAF--PFPLY-Q-EVVTALSRVEEEFG 167 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEE--EGGGH-H-HHHHHHHHHHHHHT
T ss_pred EEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEc--CCCcc-H-HHHHHHHHHHHHcC
Confidence 366999999999999999999999999999999876 222344444333221 11223 3 78888887776644
No 24
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=96.60 E-value=0.012 Score=49.44 Aligned_cols=75 Identities=9% Similarity=0.165 Sum_probs=52.5
Q ss_pred EEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCC----EEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 179 LIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGG----RIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 179 ~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~----~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
...|.+.|.+|||++.+|.++|.+.|++|..+...+.+. +..+.|++...-+.+ ....+. .|+++|..+..+.
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~--~~~~~~-~l~~~l~~~~~~~ 169 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVD--SGCNLM-QLQEEFDALCTAL 169 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEEC--TTSCHH-HHHHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCC--CCCCHH-HHHHHHHHHHHHh
Confidence 345679999999999999999999999999999998763 344555554432211 123445 7888888777665
Q ss_pred cC
Q 023629 255 SS 256 (279)
Q Consensus 255 ~~ 256 (279)
..
T Consensus 170 ~~ 171 (192)
T 1u8s_A 170 DV 171 (192)
T ss_dssp TC
T ss_pred Cc
Confidence 43
No 25
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=94.53 E-value=0.12 Score=48.27 Aligned_cols=69 Identities=16% Similarity=0.281 Sum_probs=51.9
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
|++.|.||||+.+.|...|.++|.+|+.++-+..+|+++-.+.+..... ...+. .|+++|..+-.....
T Consensus 15 lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~-----~~~~~-~l~~~l~~~~~~~~~ 83 (415)
T 3p96_A 15 ITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPAD-----VADGP-ALRHDVEAAIRKVGL 83 (415)
T ss_dssp EEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHH-----HHTSH-HHHHHHHHHHHHTTC
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCC-----cCCHH-HHHHHHHHHHHHcCe
Confidence 6699999999999999999999999999999999998765555543221 11334 778888766554443
No 26
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=94.27 E-value=0.14 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=32.2
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
+++|.|.||+|+|.+|+.+|.+.++++..+++.+.
T Consensus 2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 35699999999999999999999999999999766
No 27
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=94.06 E-value=0.34 Score=43.63 Aligned_cols=68 Identities=9% Similarity=0.042 Sum_probs=48.3
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE--eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADIS--SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is--t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
+.+.|.||+|+...|...|.+.|++|+..+-. ...++++-.+.+. .. ...++. .|++++...-.+...
T Consensus 11 Ltv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~--~~----~~~~~~-~L~~~f~~la~~l~m 80 (286)
T 3n0v_A 11 LTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR--QP----DDFDEA-GFRAGLAERSEAFGM 80 (286)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE--CC----SSCCHH-HHHHHHHHHHGGGTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe--cC----CCCCHH-HHHHHHHHHHHHcCC
Confidence 56999999999999999999999999998877 3456654333332 21 124455 788888766555443
No 28
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=94.05 E-value=0.4 Score=43.49 Aligned_cols=69 Identities=13% Similarity=0.109 Sum_probs=48.8
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
+.+.|.||+|+...|...|.+.|+.|+.++-... .|+++-.+.+.... ...++. .|+++|...-.+...
T Consensus 25 Ltv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~~-----~~~~~~-~L~~~l~~la~~l~m 95 (302)
T 3o1l_A 25 LVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRADT-----LPFDLD-GFREAFTPIAEEFSM 95 (302)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGGG-----SSSCHH-HHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecCC-----CCCCHH-HHHHHHHHHHHHhCC
Confidence 6699999999999999999999999999988754 56654333332211 123445 788888766555443
No 29
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=93.48 E-value=0.41 Score=43.10 Aligned_cols=69 Identities=14% Similarity=0.254 Sum_probs=49.0
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE--eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADIS--SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is--t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
+++.|.||+|+...|...|.++|++|+..+-. ...|+++-.+.+...+. ..++. .|+++|...-.+...
T Consensus 9 Ltv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-----~~~~~-~L~~~f~~la~~~~m 79 (288)
T 3obi_A 9 LTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-----VIPLA-SLRTGFGVIAAKFTM 79 (288)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-----CCCHH-HHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-----CCCHH-HHHHHHHHHHHHcCC
Confidence 56999999999999999999999999998875 34566544444432221 23455 788888766555443
No 30
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=92.91 E-value=0.19 Score=41.61 Aligned_cols=45 Identities=9% Similarity=0.125 Sum_probs=36.8
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVLC 226 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v~ 226 (279)
+++..+++||+|.+|+.+|.+.|++|.+..+.... +...-+|.+.
T Consensus 6 IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 6 LSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp EEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 55888999999999999999999999999987544 5555555564
No 31
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=92.78 E-value=0.52 Score=42.55 Aligned_cols=71 Identities=11% Similarity=0.188 Sum_probs=48.1
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE--eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADIS--SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is--t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
+++.|.||+|+...|...|.+.|++|+.++-. ...|+++-.+.+..... ....++. .|++++...-.+...
T Consensus 13 Ltv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~---~~~~~~~-~L~~~f~~la~~~~m 85 (292)
T 3lou_A 13 LTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHATDD---ADALRVD-ALRREFEPIAERFRM 85 (292)
T ss_dssp EEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEECC-------CCHH-HHHHHHHHHHHHHTC
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEccCc---ccCCCHH-HHHHHHHHHHHhcCc
Confidence 56999999999999999999999999998887 35566543333322200 0013445 788888766555443
No 32
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=91.81 E-value=0.25 Score=41.05 Aligned_cols=45 Identities=9% Similarity=0.124 Sum_probs=36.8
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC--CEEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG--GRIKSILVLC 226 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~--~~v~~~f~v~ 226 (279)
+++..+++||+|.+|+..|...|++|.+..+.... +...-+|.+.
T Consensus 7 IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 7 ISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 45888999999999999999999999999987543 5555566664
No 33
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=90.51 E-value=1.3 Score=39.76 Aligned_cols=67 Identities=15% Similarity=0.246 Sum_probs=45.4
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE--eeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADIS--SVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is--t~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
+.+.|.||+|+...|...|.++|+.|+.++-. ...|+++-.+.+ ... ...+. .|++++...-.+...
T Consensus 10 Ltv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~--~~~-----~~~~~-~L~~~f~~la~~~~m 78 (287)
T 3nrb_A 10 LSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV--EIP-----VAGVN-DFNSAFGKVVEKYNA 78 (287)
T ss_dssp EEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE--ECC-----C---C-HHHHHHHHHHGGGTC
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE--EcC-----CCCHH-HHHHHHHHHHHHcCC
Confidence 56999999999999999999999999998875 345654433222 211 12233 677777665555443
No 34
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=89.72 E-value=0.6 Score=40.51 Aligned_cols=37 Identities=5% Similarity=0.090 Sum_probs=28.9
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeC
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVG 216 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~ 216 (279)
+.+.|.+.||+|+|++|+.+|.+.+.+|.+.+..+..
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 3455889999999999999999999999999998753
No 35
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=88.14 E-value=0.81 Score=38.89 Aligned_cols=46 Identities=9% Similarity=0.268 Sum_probs=36.4
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee-C-CEEEEEEEEE
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV-G-GRIKSILVLC 226 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~-~-~~v~~~f~v~ 226 (279)
.++|..+++||.|.+|+..|...|++|.+..+... + +...-+|.|.
T Consensus 31 ~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 31 LVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp EEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 35688899999999999999999999999888743 3 4455555563
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=77.50 E-value=8.6 Score=29.92 Aligned_cols=40 Identities=13% Similarity=0.222 Sum_probs=29.4
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEE
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSIL 223 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f 223 (279)
+.-.++||.+.+++++|.+.|+.|...-++..+++..-+|
T Consensus 77 v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i 116 (144)
T 2f06_A 77 ISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI 116 (144)
T ss_dssp EEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred EEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence 4567999999999999999999996655442345544333
No 37
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=73.06 E-value=10 Score=33.77 Aligned_cols=45 Identities=2% Similarity=-0.023 Sum_probs=37.5
Q ss_pred cCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecCC
Q 023629 186 CDDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKDA 230 (279)
Q Consensus 186 c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~~ 230 (279)
..++||.|++++..|...|+++.+-..-...+. ..+.|+|...+.
T Consensus 207 ~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~ 252 (283)
T 2qmx_A 207 LPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH 252 (283)
T ss_dssp EECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC
T ss_pred cCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC
Confidence 358899999999999999999999998876554 467898876654
No 38
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=71.71 E-value=32 Score=31.23 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=36.7
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEE-EEEEEEEecCC
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRADISSVGGRI-KSILVLCNKDA 230 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v-~~~f~v~~~~~ 230 (279)
.++||.|++++..|...|++.++-..-...+.. .+.|+|...+.
T Consensus 216 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 260 (329)
T 3luy_A 216 VTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAA 260 (329)
T ss_dssp CCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSC
T ss_pred CCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCC
Confidence 368999999999999999999999998776654 67888865543
No 39
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=70.03 E-value=15 Score=28.42 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=29.5
Q ss_pred EEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 181 KASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 181 ~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
++++.-+++||.|.+|+.+|.+.|+.|....+...
T Consensus 8 ~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~ 42 (144)
T 2f06_A 8 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAEN 42 (144)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEec
Confidence 45677889999999999999999999987766543
No 40
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=68.36 E-value=13 Score=33.60 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=37.4
Q ss_pred EEcC-CCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEecCC
Q 023629 184 VSCD-DQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNKDA 230 (279)
Q Consensus 184 i~c~-~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~~~ 230 (279)
+... ++||.|++++..|...|+++.+-..-...+. -.+.|+|...+.
T Consensus 206 f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 254 (313)
T 3mwb_A 206 VPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH 254 (313)
T ss_dssp EECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC
T ss_pred EEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC
Confidence 4454 8999999999999999999999988765444 367888876543
No 41
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=58.51 E-value=29 Score=30.61 Aligned_cols=42 Identities=7% Similarity=0.124 Sum_probs=35.7
Q ss_pred CCCccHHHHHHHHHHhcCCeeEEEEEEeeCCE-EEEEEEEEec
Q 023629 187 DDQPELYKEIIRVLKGLGLTTVRADISSVGGR-IKSILVLCNK 228 (279)
Q Consensus 187 ~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~-v~~~f~v~~~ 228 (279)
.++||.|++++..|...|+++..-..-...+. ..+.|+|...
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 68999999999999999999999998876543 4678888666
No 42
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=51.68 E-value=60 Score=30.09 Aligned_cols=44 Identities=5% Similarity=0.129 Sum_probs=37.3
Q ss_pred EEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEE
Q 023629 182 ASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVL 225 (279)
Q Consensus 182 v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v 225 (279)
+-+.-.++||.+.+|..+|-+.|+.|......+.|+...-++-+
T Consensus 334 l~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidv 377 (404)
T 1sc6_A 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDI 377 (404)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEc
Confidence 34666799999999999999999999999999988886665555
No 43
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=48.52 E-value=24 Score=28.16 Aligned_cols=35 Identities=34% Similarity=0.560 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCC----CCcCchhhHHHHHHHHHHHH
Q 023629 95 RINAQLATLRKLIPK----SEKMDKAALLGSAIEHVKDL 129 (279)
Q Consensus 95 ~in~~~~~L~~lvP~----~~k~dkasil~~ai~yik~L 129 (279)
.|+..|..|+.++|. ..++-|--||+.|.+++..|
T Consensus 95 tId~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 95 TIDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp CHHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 488999999999994 34667999999999998766
No 44
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=48.02 E-value=81 Score=23.28 Aligned_cols=52 Identities=13% Similarity=0.236 Sum_probs=36.0
Q ss_pred eEEEEEEEcCC-CccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCC
Q 023629 178 TLIKASVSCDD-QPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDA 230 (279)
Q Consensus 178 ~~I~v~i~c~~-r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~ 230 (279)
.+|++....+. ..-+++++.+.+ +..++|+.++|..+++..+..+++...+.
T Consensus 22 ~lvrL~f~g~~~~~PiIs~l~~~~-~v~vnIL~g~I~~i~~~~~G~L~v~l~G~ 74 (106)
T 3dhx_A 22 PMLRLEFTGQSVDAPLLSETARRF-NVNNNIISAQMDYAGGVKFGIMLTEMHGT 74 (106)
T ss_dssp EEEEEEEEEECTTCCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEESC
T ss_pred eEEEEEEcCCccChhHHHHHHHHH-CCCEEEEEEEeEEECCeeEEEEEEEEeCC
Confidence 45666665543 233565555443 23477899999999999999999987653
No 45
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=45.77 E-value=60 Score=26.43 Aligned_cols=53 Identities=9% Similarity=0.122 Sum_probs=34.0
Q ss_pred ecCceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEE-ee--CCEEEEEEEEEe
Q 023629 174 VKGDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADIS-SV--GGRIKSILVLCN 227 (279)
Q Consensus 174 ~~~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~is-t~--~~~v~~~f~v~~ 227 (279)
..+-..|.|. .-.+++|.+.+|+.+|.+.|+.|.--.-+ .. .|..--+|.+..
T Consensus 13 ~~~~~~Iti~-~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~ 68 (181)
T 3s1t_A 13 DRSEAKVTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 68 (181)
T ss_dssp ECSEEEEEEE-EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET
T ss_pred cCCEEEEEEe-cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh
Confidence 3444455543 34688999999999999999887654322 21 344444566643
No 46
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=44.29 E-value=66 Score=25.51 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=32.3
Q ss_pred cCceEEEEEEEc-CCCccHHHHHHHHHHhcCCeeEEEEEEee---CCEEEEEEEEEe
Q 023629 175 KGDTLIKASVSC-DDQPELYKEIIRVLKGLGLTTVRADISSV---GGRIKSILVLCN 227 (279)
Q Consensus 175 ~~~~~I~v~i~c-~~r~glL~~Il~aLe~lgL~V~~a~ist~---~~~v~~~f~v~~ 227 (279)
.+-..|. +.. .+++|.+.+|+.+|.+.|+.|.-...+.. .|..--.|.|..
T Consensus 14 ~~~a~It--v~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~ 68 (167)
T 2dt9_A 14 LDHAQIG--LIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK 68 (167)
T ss_dssp CSEEEEE--EEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG
T ss_pred CCEEEEE--EecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh
Confidence 3434444 433 67899999999999999988765443322 233334566643
No 47
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=42.89 E-value=83 Score=25.32 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=27.8
Q ss_pred ecCceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEee
Q 023629 174 VKGDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSV 215 (279)
Q Consensus 174 ~~~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~ 215 (279)
..+-..|.|. ...+++|.+.+|+++|.+.|+.|.-...++.
T Consensus 12 ~~~~~~Itv~-~~~~~~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 12 DKSEAKVTVL-GISDKPGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp ECSEEEEEEE-EEECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred cCCEEEEEEe-cCCCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 3344444432 2478999999999999999966665544433
No 48
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=40.21 E-value=1.1e+02 Score=29.30 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=34.7
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEee--CCEEEEEEEE
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSV--GGRIKSILVL 225 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~--~~~v~~~f~v 225 (279)
+.-.|+||.+.+|...|-+.|+.|-+..+... ++..+-++.+
T Consensus 459 v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~v 502 (529)
T 1ygy_A 459 IHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL 502 (529)
T ss_dssp EEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred EEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEE
Confidence 56779999999999999999999999999864 5565555544
No 49
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=38.35 E-value=1.2e+02 Score=24.01 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=25.5
Q ss_pred EEEEcCC---CccHHHHHHHHHHhcCCeeEEEE
Q 023629 182 ASVSCDD---QPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 182 v~i~c~~---r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
|++.... +||.+.+++++|.+.|+.|....
T Consensus 106 vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 106 VSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 5677765 89999999999999999998743
No 50
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=36.67 E-value=51 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCc
Q 023629 87 QAEKRRRDRINAQLATLRKLIPKSEK 112 (279)
Q Consensus 87 ~~Er~RR~~in~~~~~L~~lvP~~~k 112 (279)
.++|-+|...++-+.+|+.+.|+..+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCCH
Confidence 56788888899999999999996543
No 51
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=35.13 E-value=1.3e+02 Score=21.78 Aligned_cols=51 Identities=6% Similarity=0.137 Sum_probs=38.4
Q ss_pred eEEEEEEEcCC-CccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecC
Q 023629 178 TLIKASVSCDD-QPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKD 229 (279)
Q Consensus 178 ~~I~v~i~c~~-r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~ 229 (279)
.+|++...... ..-+++++.+.+ ...+.|+.++|..+++..+..|.+...+
T Consensus 24 ~lv~l~f~g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G 75 (100)
T 2qsw_A 24 KIVRLLFHGEQAKLPIISHIVQEY-QVEVSIIQGNIQQTKQGAVGSLYIQLLG 75 (100)
T ss_dssp EEEEEEEESCSCSSCHHHHHHHHH-TCEEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred EEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEeeceEcCCeeEEEEEEEEEC
Confidence 36776666543 344677776655 4668899999999999999999998765
No 52
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=34.04 E-value=1.2e+02 Score=24.02 Aligned_cols=50 Identities=14% Similarity=0.144 Sum_probs=31.8
Q ss_pred ecCceEEEEEEE-cCCCccHHHHHHHHHHhcCCeeEEEEEEe-eCCEEEEEEEE
Q 023629 174 VKGDTLIKASVS-CDDQPELYKEIIRVLKGLGLTTVRADISS-VGGRIKSILVL 225 (279)
Q Consensus 174 ~~~~~~I~v~i~-c~~r~glL~~Il~aLe~lgL~V~~a~ist-~~~~v~~~f~v 225 (279)
..+-..|. |. -.+++|.+.+|+++|.+.|+.|.....+. .+|..--.|.|
T Consensus 22 ~~~~~~i~--v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v 73 (167)
T 2re1_A 22 DKNQARIN--VRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTV 73 (167)
T ss_dssp ECCCEEEE--EEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEE
T ss_pred cCCEEEEE--EecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEE
Confidence 33444444 65 37889999999999999998876554332 13433334555
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=33.69 E-value=81 Score=21.22 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 023629 89 EKRRRDRINAQLATLRK 105 (279)
Q Consensus 89 Er~RR~~in~~~~~L~~ 105 (279)
||++|.+...+.++.++
T Consensus 1 Ekr~rrrerNR~AA~rc 17 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKC 17 (63)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHH
Confidence 34444444555555554
No 54
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=32.98 E-value=86 Score=26.20 Aligned_cols=54 Identities=11% Similarity=0.216 Sum_probs=33.9
Q ss_pred ecCceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEE--EEEEee-CCEEEEEEEEEec
Q 023629 174 VKGDTLIKASVSCDDQPELYKEIIRVLKGLGLTTVR--ADISSV-GGRIKSILVLCNK 228 (279)
Q Consensus 174 ~~~~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~--a~ist~-~~~v~~~f~v~~~ 228 (279)
..+...|.|. ..+++||.+.+|+.+|.+.|+.|-- .+++.. ++...-+|.+...
T Consensus 32 ~~~~a~Iti~-g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~ 88 (200)
T 4go7_X 32 DRSEAKVTIV-GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRD 88 (200)
T ss_dssp ECSEEEEEEE-EEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGG
T ss_pred cCCEEEEEEe-cCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchh
Confidence 3444454432 3578999999999999999977653 344433 3344456666433
No 55
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=32.43 E-value=54 Score=30.95 Aligned_cols=45 Identities=4% Similarity=0.035 Sum_probs=35.6
Q ss_pred EEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCC-EEEEEEEEEec
Q 023629 184 VSCDDQPELYKEIIRVLKGLGLTTVRADISSVGG-RIKSILVLCNK 228 (279)
Q Consensus 184 i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~-~v~~~f~v~~~ 228 (279)
+...++||-|++++.+|...|+++++-..-...+ .-.+.|+|...
T Consensus 39 Fsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~~eY~FfVD~e 84 (429)
T 1phz_A 39 FSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLD 84 (429)
T ss_dssp EEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBC
T ss_pred EEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCCccEEEEEEEe
Confidence 3446789999999999999999999888876543 34678888544
No 56
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=32.23 E-value=1.9e+02 Score=23.04 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=37.2
Q ss_pred EEEEcC---CCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhc
Q 023629 182 ASVSCD---DQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRM 254 (279)
Q Consensus 182 v~i~c~---~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~ 254 (279)
|++... ++||++.+++++|.+.|+.|.-.. +..-.+ .|.|...+ .. ...++|++++.-.
T Consensus 98 VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~I--s~vV~~~d---------~~-~Av~~Lh~~F~l~ 159 (178)
T 2dtj_A 98 VSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRI--SVLIREDD---------LD-AAARALHEQFQLG 159 (178)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEGGG---------HH-HHHHHHHHHHTCC
T ss_pred EEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeE--EEEEeHHH---------HH-HHHHHHHHHHccC
Confidence 456554 688999999999999999997743 333332 33342222 12 3456677777543
No 57
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=32.13 E-value=59 Score=17.80 Aligned_cols=20 Identities=20% Similarity=0.056 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 023629 117 ALLGSAIEHVKDLKLKAMEV 136 (279)
Q Consensus 117 sil~~ai~yik~L~~~~~~l 136 (279)
+-|-+|-.|+.+|+++++..
T Consensus 4 sgliearkyleqlhrklknc 23 (26)
T 1xkm_B 4 SGLIEARKYLEQLHRKLKNC 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45778999999999887653
No 58
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=29.09 E-value=52 Score=31.07 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=27.5
Q ss_pred ceEEEEEEEcCCCccHHHHHHHHHHhcCCeeEEEE
Q 023629 177 DTLIKASVSCDDQPELYKEIIRVLKGLGLTTVRAD 211 (279)
Q Consensus 177 ~~~I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ 211 (279)
.++|+ +...|+||.|.+|..+|.+.++.|-+.-
T Consensus 359 ~yy~r--~~~~d~~gvl~~i~~~~~~~~isi~~~~ 391 (444)
T 3mtj_A 359 AYYLR--LRAFDRPGVLADITRILADSSISIDAMV 391 (444)
T ss_dssp EEEEE--EEEC-CCHHHHHHHHHHHHTTCCEEEEE
T ss_pred eeEEE--EEecCcccHHHHHHHHHHhcCCceeEEe
Confidence 45777 8889999999999999999999986643
No 59
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=29.06 E-value=2.3e+02 Score=22.85 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=39.0
Q ss_pred EEEEcC---CCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecCCCCccccccHHHHHHHHHHHHHhhccC
Q 023629 182 ASVSCD---DQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKDACDHQESVSLSRRLKQALHLALSRMSS 256 (279)
Q Consensus 182 v~i~c~---~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~~~~~~~~~~l~~~L~qaL~~aL~k~~~ 256 (279)
|++... .+||++.+++++|.+.|+.|.-.. +-.-.+ .+.|...+. . ...++|+.++.-...
T Consensus 99 VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~I--s~vV~~~d~---------~-~Av~aLH~~f~l~~~ 162 (181)
T 3s1t_A 99 VSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRI--SVLCRDTEL---------D-KAVVALHEAFGLGGD 162 (181)
T ss_dssp EEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEE--EEEEEGGGH---------H-HHHHHHHHHHTCCC-
T ss_pred EEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEE--EEEEeHHHH---------H-HHHHHHHHHHcCCCC
Confidence 455543 689999999999999999988766 223333 244533321 2 445677777754433
No 60
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=27.72 E-value=1.7e+02 Score=21.05 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=36.4
Q ss_pred eEEEEEEEcCC-CccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEEEecC
Q 023629 178 TLIKASVSCDD-QPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVLCNKD 229 (279)
Q Consensus 178 ~~I~v~i~c~~-r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v~~~~ 229 (279)
.+|++...... ..-+++++.+.+ +..+.|+.++|..+++..+..|.+...+
T Consensus 24 ~lv~l~f~g~~~~~pvis~l~~~~-~v~vnIl~g~i~~i~~~~~G~L~v~l~G 75 (101)
T 2qrr_A 24 PLVRMEFTGATVDAPLMSQISRKY-NIDVSILSSDLDYAGGVKFGMMVAELFG 75 (101)
T ss_dssp EEEEEEECTTSCSSCHHHHHHHHS-CCEEEEEEEEEEEETTEEEEEEEEEEES
T ss_pred EEEEEEEcCCCcCchHHHHHHHHh-CCCEEEEEeeeeEcCCeeEEEEEEEEeC
Confidence 46776665543 334566665544 3457789999999999999999998765
No 61
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.34 E-value=98 Score=22.93 Aligned_cols=22 Identities=18% Similarity=0.078 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc
Q 023629 119 LGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 119 l~~ai~yik~L~~~~~~l~~~~ 140 (279)
.+.|=+||.+|+++++-|++..
T Consensus 65 ~e~a~e~vp~L~~~i~vle~~~ 86 (94)
T 3fx7_A 65 DEAAQEQIAWLKERIRVLEEDY 86 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhHHHHHHHHHhHHHH
Confidence 5678899999999999998653
No 62
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=24.31 E-value=91 Score=17.54 Aligned_cols=20 Identities=10% Similarity=0.011 Sum_probs=15.5
Q ss_pred CchhhHHHHHHHHHHHHHHH
Q 023629 113 MDKAALLGSAIEHVKDLKLK 132 (279)
Q Consensus 113 ~dkasil~~ai~yik~L~~~ 132 (279)
+....+|-+|.+|+....++
T Consensus 2 ~~nvq~LLeAAeyLErrEre 21 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRERE 21 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 45667899999999877664
No 63
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=24.02 E-value=1.4e+02 Score=23.50 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=24.2
Q ss_pred EEEEcCC---CccHHHHHHHHHHhcCCeeEEE
Q 023629 182 ASVSCDD---QPELYKEIIRVLKGLGLTTVRA 210 (279)
Q Consensus 182 v~i~c~~---r~glL~~Il~aLe~lgL~V~~a 210 (279)
|++.... +||++.+++++|.+.|+.|.-.
T Consensus 98 vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~i 129 (167)
T 2dt9_A 98 VSIVGVGLASTPEVPAKMFQAVASTGANIEMI 129 (167)
T ss_dssp EEEEESSGGGSTHHHHHHHHHHHHTTCCCCEE
T ss_pred EEEECCCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence 5576654 8999999999999999999544
No 64
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=22.87 E-value=2e+02 Score=26.71 Aligned_cols=46 Identities=7% Similarity=0.110 Sum_probs=37.3
Q ss_pred EEEEEEcCCCccHHHHHHHHHHhcCCeeEEEEEEeeCCEEEEEEEE
Q 023629 180 IKASVSCDDQPELYKEIIRVLKGLGLTTVRADISSVGGRIKSILVL 225 (279)
Q Consensus 180 I~v~i~c~~r~glL~~Il~aLe~lgL~V~~a~ist~~~~v~~~f~v 225 (279)
.|+.+.-.+.||+|.+|..+|.+.|+.|..-...+.|+...-++-+
T Consensus 344 ~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~ 389 (416)
T 3k5p_A 344 TRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEA 389 (416)
T ss_dssp EEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEE
T ss_pred eEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEe
Confidence 3555777899999999999999999999998888888875544434
No 65
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=21.77 E-value=72 Score=23.03 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc
Q 023629 118 LLGSAIEHVKDLKLKAMEVSKTL 140 (279)
Q Consensus 118 il~~ai~yik~L~~~~~~l~~~~ 140 (279)
-+..||+-|.-||.++++|+.+.
T Consensus 14 KIq~avdtI~lLqmEieELKekN 36 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKN 36 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999998765
Done!