BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 023630
         (279 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris
 pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
 pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
           Sylvestris, Complexed With Methylmalonyl Coa
          Length = 413

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 191 NVSAACVMAALATVKKAVDTKTCNTVASGIQFGLL 225
           N+S+ACV   L   +KA     C+T   G++ G+L
Sbjct: 359 NMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVL 393


>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
 pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
           Cyclization Specificity Of Type Iii Polyketide
           Synthases: Pine Stilbene Synthase Structure
          Length = 397

 Score = 28.9 bits (63), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 191 NVSAACVMAALATVKKAVDTKTCNTVASGIQFGLL 225
           N+S+ACV   L   +KA     C+T   G++ G+L
Sbjct: 343 NMSSACVHFILDQTRKASLQNGCSTTGEGLEMGVL 377


>pdb|3IGN|A Chain A, Crystal Structure Of The Ggdef Domain From Marinobacter
           Aquaeolei Diguanylate Cyclase Complexed With C-Di-Gmp -
           Northeast Structural Genomics Consortium Target Mqr89a
          Length = 177

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 7/87 (8%)

Query: 166 LARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNTVASGIQFGLL 225
           + R N R    AG      FG ++    A         +++A++  T +T A  IQ+   
Sbjct: 72  VTRNNIRQSDSAGRYGGEEFGIILPETDAESARVICERIREAIEKSTVSTSAGDIQY--- 128

Query: 226 GCLSTVSTFMAEFNAMRESTSPWRAYA 252
               TVS  +A+     E+   W   A
Sbjct: 129 ----TVSXGIAQLTETPENYXQWXQKA 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.451 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,819,565
Number of Sequences: 62578
Number of extensions: 271750
Number of successful extensions: 526
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 523
Number of HSP's gapped (non-prelim): 5
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)