BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023630
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9UTS8|YI7B_SCHPO UPF0695 membrane protein C977.11/PB8B6.06c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC977.11 PE=3 SV=1
Length = 311
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 78/292 (26%), Positives = 126/292 (43%), Gaps = 39/292 (13%)
Query: 2 VGSFLMGWWGV--VFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVD------ 53
VG +MG+ VF + +L + + TG+ GSLTTFS W +M +
Sbjct: 42 VGCVIMGFCQTESVFFPRPKHNATFL-LAITTGFCGSLTTFSSWMLQMFTGMANLDPFER 100
Query: 54 ---GHWVLAFLG-FFIGLFLASHSIIFGIETAKGFRWLLKRYSTSSGKETPKSGSNWKVD 109
G+ L+ + F + + +A S+I+G + K T+ K W +
Sbjct: 101 RGRGYSFLSVVSDFMVTMCIAMSSLIWGKQIGK----------TTGQWRIGKVAFAWPIP 150
Query: 110 SCKRHLAVILALTLLLCALWIVSAVLSKEEFDGGGRAAELWLGCIVGPIGVWIRWFLAR- 168
+ H+ V + L LL ++ +A + + R L I P R +LAR
Sbjct: 151 A-HTHIVVRVLLLLLSICFFVGAAFYTAYTTNVTHRGIGFSL--IFSPFAALTRLYLARF 207
Query: 169 LNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVD-TKTCNTVASGIQFGLLGC 227
LN ++P+GTL ANV A +++ + + + T +V GIQ G
Sbjct: 208 LNSPQY-------FIPYGTLCANVFATLLLSIMYMIPQITHCTPVSRSVMYGIQNGFCAV 260
Query: 228 LSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILIYSVPVWTKGYN 279
LST+STF E + M RAY Y +I++ ISF + +++ W GY
Sbjct: 261 LSTLSTFSNELHTMPIK----RAYIYCIISVAISFSICVIVDGATAWGHGYT 308
>sp|Q08913|YO390_YEAST UPF0695 membrane protein YOR390W OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YOR390W PE=3 SV=1
Length = 375
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 124/306 (40%), Gaps = 60/306 (19%)
Query: 20 KVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVD---------------GHWVLAFLG-F 63
K L +G+ TGY G+L++FS +M + + + + ++ FL
Sbjct: 76 KDHQVLFLGVTTGYCGALSSFSSMLLEMFEHSTNLTNGNIANHTKLPNRAYGIMEFLSVL 135
Query: 64 FIGLFLASHSIIFGIETAK------GFRWLLKRYSTSSG-----------KETPKSGSNW 106
+ L ++ S+IFG + K G K Y+ S +E K+ +
Sbjct: 136 LVHLMVSMGSLIFGRQLGKEVIVAYGSSSFSKPYTPPSDTVKENAGDVDTQEMEKNILEF 195
Query: 107 KVDSC----KRHLAVILALTLLLCALWIVSAVLSKEEFDGGGRAAELW-LGCIVGPIGVW 161
K + K+ ++ L L I+ V+ ++ R W L C+ G +
Sbjct: 196 KFKTPAPFFKKFFDIVDKLAYALAFPLIILFVVLCAYYENYSRGK--WTLPCLFGIFAGF 253
Query: 162 IRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKK-----AVDTKTCNT- 215
+R++LA + + T + P GT +ANV A ++ V++ + D N+
Sbjct: 254 LRYWLAEMFNK------TNKKFPLGTFLANVFATLLIGIFTMVQRGKKHFSTDVPIVNSL 307
Query: 216 ----VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILIYSV 271
+ S + G G LST+STF+ E + S Y ++I IS+ L ++
Sbjct: 308 NSCHIVSALISGFCGTLSTISTFINEGYKL----SFINMLIYYTVSIAISYCLLVITLGS 363
Query: 272 PVWTKG 277
WT+G
Sbjct: 364 YAWTRG 369
>sp|Q4L7C3|CRCB2_STAHJ Protein CrcB homolog 2 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=crcB2 PE=3 SV=1
Length = 121
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 48/102 (47%), Gaps = 9/102 (8%)
Query: 154 IVGPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTC 213
I G G +R+ L+ LN +P GTLIAN+ A +M L+++ K
Sbjct: 8 IGGLFGALLRYVLSTLNVD--------SGLPLGTLIANIVGAFLMGYLSSLSIHF-FKNN 58
Query: 214 NTVASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYAL 255
+ G+ GLLG L+T STF E M ++ S + Y L
Sbjct: 59 PLIKKGVTTGLLGALTTFSTFQFELVTMSQNNSIALLFIYGL 100
>sp|Q08991|YP279_YEAST UPF0695 membrane protein YPL279C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YPL279C PE=3 SV=1
Length = 375
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 70/306 (22%), Positives = 124/306 (40%), Gaps = 60/306 (19%)
Query: 20 KVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVD---------------GHWVLAFLG-F 63
K L +G+ TGY G+L++FS +M + + + + ++ FL
Sbjct: 76 KDHQVLFLGVTTGYCGALSSFSSMLLEMFEHSTNLTNGNIANHTKLPNRAYGIMEFLSVL 135
Query: 64 FIGLFLASHSIIFGIETAK------GFRWLLKRYSTSSG-----------KETPKSGSNW 106
+ L ++ S+IFG + K G K Y+ S +E K+ +
Sbjct: 136 LVHLMVSMGSLIFGRQLGKEVIVAYGSSSFSKPYTPPSDTVKENAGDVDTQEMEKNILEF 195
Query: 107 KVDSC----KRHLAVILALTLLLCALWIVSAVLSKEEFDGGGRAAELW-LGCIVGPIGVW 161
K + K+ V+ L L I+ V+ ++ R W L C+ G +
Sbjct: 196 KFKTPAPFFKKFFDVVDKLAYALAFPLIILFVVLCAYYENYSRGK--WTLPCLFGIFAGF 253
Query: 162 IRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKK-----AVDTKTCNT- 215
+R++LA + + T + P GT +ANV A ++ V++ + D N+
Sbjct: 254 LRYWLAEMFNK------TNKKFPLGTFLANVFATLLIGIFTMVQRGKKHFSTDIPIVNSL 307
Query: 216 ----VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILIYSV 271
+ S + G G LST+STF+ E + S Y ++I IS+ L ++
Sbjct: 308 NSCHIVSALISGFCGTLSTISTFINEGYKL----SFINMLIYYTVSIGISYCLLVITLGS 363
Query: 272 PVWTKG 277
WT+G
Sbjct: 364 YAWTRG 369
>sp|Q2FXE6|CRCB1_STAA8 Protein CrcB homolog 1 OS=Staphylococcus aureus (strain NCTC 8325)
GN=crcB1 PE=3 SV=1
Length = 121
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTLIAN++ A VM L + A + T
Sbjct: 10 GALGALLRYLISFLNTDG--------GFPIGTLIANLTGAFVMGLLTALTIAFFSNH-PT 60
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYAL 255
+ I G LG L+T STF E M + YA+
Sbjct: 61 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYAV 100
>sp|P61384|CRCB1_STAAN Protein CrcB homolog 1 OS=Staphylococcus aureus (strain N315)
GN=crcB1 PE=3 SV=1
Length = 147
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTLIAN++ A VM L + A + T
Sbjct: 36 GALGALLRYLISFLNTDG--------GFPIGTLIANLTGAFVMGLLTALTIAFFSNH-PT 86
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILI 268
+ I G LG L+T STF E M + YA + S+ GIL+
Sbjct: 87 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYA----VTSYVFGILL 135
>sp|P61382|CRCB1_STAAM Protein CrcB homolog 1 OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=crcB1 PE=3 SV=1
Length = 147
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTLIAN++ A VM L + A + T
Sbjct: 36 GALGALLRYLISFLNTDG--------GFPIGTLIANLTGAFVMGLLTALTIAFFSNH-PT 86
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILI 268
+ I G LG L+T STF E M + YA + S+ GIL+
Sbjct: 87 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYA----VTSYVFGILL 135
>sp|A6Q4S3|CRCB_NITSB Protein CrcB homolog OS=Nitratiruptor sp. (strain SB155-2) GN=crcB
PE=3 SV=1
Length = 128
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
++GSF++G+ + F+ I+ + + I TG+LG+LTTFS ++ + L + DG W+ AF
Sbjct: 44 VLGSFIIGFLYMYFEQSINPIYKAMFI---TGFLGALTTFSTFSLETLLMIQDGLWIRAF 100
Query: 61 LGFFIGLFLASHS 73
L + + L S
Sbjct: 101 LNILLNVILTISS 113
>sp|Q8NW04|CRCB1_STAAW Protein CrcB homolog 1 OS=Staphylococcus aureus (strain MW2)
GN=crcB1 PE=3 SV=1
Length = 147
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTLIAN++ A VM L + A + T
Sbjct: 36 GALGALLRYLISFLNTDG--------GFPIGTLIANLTGAFVMGLLTALTIAFFSNH-PT 86
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILI 268
+ I G LG L+T STF E M + YA + S+ GIL+
Sbjct: 87 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYA----VTSYVFGILL 135
>sp|Q6G8E8|CRCB1_STAAS Protein CrcB homolog 1 OS=Staphylococcus aureus (strain MSSA476)
GN=crcB1 PE=3 SV=1
Length = 147
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTLIAN++ A VM L + A + T
Sbjct: 36 GALGALLRYLISFLNTDG--------GFPIGTLIANLTGAFVMGLLTALTIAFFSNH-PT 86
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILI 268
+ I G LG L+T STF E M + YA + S+ GIL+
Sbjct: 87 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYA----VTSYVFGILL 135
>sp|Q6GFS0|CRCB1_STAAR Protein CrcB homolog 1 OS=Staphylococcus aureus (strain MRSA252)
GN=crcB1 PE=3 SV=1
Length = 147
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTLIAN++ A VM L + A + T
Sbjct: 36 GALGALLRYLISFLNTDG--------GFPIGTLIANLTGAFVMGLLTALTIAFFSNH-PT 86
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILI 268
+ I G LG L+T STF E M + YA + S+ GIL+
Sbjct: 87 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYA----VTSYVFGILL 135
>sp|Q5HEZ3|CRCB1_STAAC Protein CrcB homolog 1 OS=Staphylococcus aureus (strain COL)
GN=crcB1 PE=3 SV=1
Length = 147
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 13/113 (11%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTLIAN++ A VM L + A + T
Sbjct: 36 GALGALLRYLISFLNTDG--------GFPIGTLIANLTGAFVMGLLTALTIAFFSNH-PT 86
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGILI 268
+ I G LG L+T STF E M + YA + S+ GIL+
Sbjct: 87 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYA----VTSYVFGILL 135
>sp|Q2YTK5|CRCB1_STAAB Protein CrcB homolog 1 OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=crcB1 PE=3 SV=2
Length = 121
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ ++ LN G P GTL+AN++ A +M L + A + T
Sbjct: 10 GALGALLRYLISFLNTDG--------GFPIGTLVANLTGAFIMGLLTALTIAFFSNH-PT 60
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYAL 255
+ I G LG L+T STF E M + YA+
Sbjct: 61 LKKAITTGFLGALTTFSTFQLELIHMFDHQQFITLLLYAI 100
>sp|A5IL48|CRCB_THEP1 Protein CrcB homolog OS=Thermotoga petrophila (strain RKU-1 / ATCC
BAA-488 / DSM 13995) GN=crcB PE=3 SV=1
Length = 127
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAAL--ATVKKAVDTKTC 213
G IG +R+ L R + ++P GT+I N + ++ L A ++K +K
Sbjct: 13 GAIGAVLRY----LVSRTINSLLPFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSK-- 66
Query: 214 NTVASGIQF---GLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISF 262
I F GLLG +T STF E ++ E SP R AYAL+ +L +F
Sbjct: 67 ----EAILFFGTGLLGAFTTFSTFTYETLSLIEE-SPARGVAYALVNLLFAF 113
>sp|Q8CS29|CRCB1_STAES Protein CrcB homolog 1 OS=Staphylococcus epidermidis (strain ATCC
12228) GN=crcB1 PE=3 SV=1
Length = 121
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G IR+ L+ LN + T +P GT +AN+ A +M ++ + ++ KT
Sbjct: 10 GALGALIRFCLSMLN-----EGST---IPLGTFVANLLGAFLMGSIGALSLSLF-KTHPN 60
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITI--LISFGLGIL 267
+ G+ GLLG L+T STF E + + + + L TI + S+ LGIL
Sbjct: 61 IKKGLTTGLLGALTTFSTFQFELVTL------FNQHHFILFTIYGVTSYILGIL 108
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVL 58
++G+FLMG G + + K + GL TG LG+LTTFS + +++ L H++L
Sbjct: 38 LLGAFLMGSIGAL-SLSLFKTHPNIKKGLTTGLLGALTTFSTFQFELVTLFNQHHFIL 94
>sp|Q5HND1|CRCB1_STAEQ Protein CrcB homolog 1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=crcB1 PE=3 SV=1
Length = 121
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 17/114 (14%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G IR+ L+ LN + T +P GT +AN+ A +M ++ + ++ KT
Sbjct: 10 GALGALIRFCLSMLN-----EGST---IPLGTFVANLLGAFLMGSIGALSLSLF-KTHPN 60
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITI--LISFGLGIL 267
+ G+ GLLG L+T STF E + + + + L TI + S+ LGIL
Sbjct: 61 IKKGLTTGLLGALTTFSTFQFELVTL------FNQHHFILFTIYGVTSYILGIL 108
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVL 58
++G+FLMG G + + K + GL TG LG+LTTFS + +++ L H++L
Sbjct: 38 LLGAFLMGSIGAL-SLSLFKTHPNIKKGLTTGLLGALTTFSTFQFELVTLFNQHHFIL 94
>sp|Q49YL2|CRCB2_STAS1 Protein CrcB homolog 2 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=crcB2
PE=3 SV=1
Length = 121
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G +R+ L+ +N T +P GT IAN+ A +M L T+ +
Sbjct: 10 GAVGALLRYLLSFIN--------TSFEMPIGTFIANLCGAFLMGFLGTLAIQYFNNS-PM 60
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYAL 255
+ GI G +G L+T STF E ES S YAL
Sbjct: 61 LKKGITTGFIGSLTTFSTFQFELVQFFESGSFILLIVYAL 100
Score = 35.0 bits (79), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVL 58
+ G+FLMG+ G + + S L G+ TG++GSLTTFS + +++ G ++L
Sbjct: 38 LCGAFLMGFLGTLAIQYFNN-SPMLKKGITTGFIGSLTTFSTFQFELVQFFESGSFIL 94
>sp|Q9WXM8|CRCB_THEMA Protein CrcB homolog OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=crcB PE=3 SV=1
Length = 127
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAAL--ATVKKAVDTKTC 213
G IG +R+ ++R L ++P GT+I N + ++ L A ++K +K
Sbjct: 13 GAIGAVLRYLVSRTINSLL----PFSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLSK-- 66
Query: 214 NTVASGIQF---GLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISF 262
I F GLLG +T STF E ++ E SP R AYAL +L +F
Sbjct: 67 ----EAILFFGTGLLGAFTTFSTFTYETLSLIEE-SPARGVAYALANLLFAF 113
>sp|B3E5K6|CRCB_GEOLS Protein CrcB homolog OS=Geobacter lovleyi (strain ATCC BAA-1151 /
DSM 17278 / SZ) GN=crcB PE=3 SV=1
Length = 125
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 19 SKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+ +SD L IGL G++G LTTFS ++ + L DG +V+AF
Sbjct: 59 TMLSDTLRIGLTVGFMGGLTTFSTFSYETFKLLEDGQFVMAF 100
>sp|B1KG50|CRCB_SHEWM Protein CrcB homolog OS=Shewanella woodyi (strain ATCC 51908 /
MS32) GN=crcB PE=3 SV=1
Length = 124
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 1 MVGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSFLMG V++ G +S+VS + + G LG+LTTFS ++ + L L G W+ A
Sbjct: 42 IIGSFLMG---VIYALGQVSEVSPEIKALVGVGLLGALTTFSTFSNETLLLIQSGAWLKA 98
Query: 60 FL 61
FL
Sbjct: 99 FL 100
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G IG R+ ++ + G A PFGTL+ N+ + +M + + + ++
Sbjct: 11 GSIGAVFRYLISIFMVQLFGSA-----FPFGTLLVNIIGSFLMGVIYALGQV--SEVSPE 63
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAY 251
+ + + GLLG L+T STF E + +S + +A+
Sbjct: 64 IKALVGVGLLGALTTFSTFSNETLLLIQSGAWLKAF 99
>sp|A5GAD3|CRCB_GEOUR Protein CrcB homolog OS=Geobacter uraniireducens (strain Rf4)
GN=crcB PE=3 SV=1
Length = 124
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 12/87 (13%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+VG+F +G + F + VS L IGL G+LG LTTFS ++ + L DG
Sbjct: 42 IVGAFCIGLI-MEFSLRSALVSPQLRIGLTIGFLGGLTTFSTFSYETFRLLEDGE----- 95
Query: 61 LGFFIGLFLASHSIIFGIETAKGFRWL 87
L +AS +++F + T F WL
Sbjct: 96 ------LLIASANVLFSVMTCLVFTWL 116
>sp|Q24VQ6|CRCB1_DESHY Protein CrcB homolog 1 OS=Desulfitobacterium hafniense (strain
Y51) GN=crcB1 PE=3 SV=1
Length = 114
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 1 MVGSFLMGWW-GVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSFL+ W VFK ++S +L + TG++GS TTFS + + + L DGH LA
Sbjct: 29 LLGSFLLAWLTSYVFKK--VRLSPHLSTAIGTGFVGSFTTFSTLSVETISLFQDGHNFLA 86
>sp|A8FV66|CRCB_SHESH Protein CrcB homolog OS=Shewanella sediminis (strain HAW-EB3)
GN=crcB PE=3 SV=1
Length = 124
Score = 38.9 bits (89), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
++GSFLMG + G +S+VS + + G LG+LTTFS ++ + L L G W+ AF
Sbjct: 42 VIGSFLMGT--IYALGQVSQVSPEIKALVGVGLLGALTTFSTFSNETLLLIQSGAWIKAF 99
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G IG R+ L+ + G A PFGTL+ NV + +M + + + ++
Sbjct: 11 GSIGAVFRYLLSIFMLQLFGSA-----FPFGTLLVNVIGSFLMGTIYALGQV--SQVSPE 63
Query: 216 VASGIQFGLLGCLSTVSTFMAE 237
+ + + GLLG L+T STF E
Sbjct: 64 IKALVGVGLLGALTTFSTFSNE 85
>sp|A3QEI9|CRCB_SHELP Protein CrcB homolog OS=Shewanella loihica (strain ATCC BAA-1088
/ PV-4) GN=crcB PE=3 SV=1
Length = 124
Score = 38.1 bits (87), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 1 MVGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSFLMG V++ G+ S+VS + + G LG+LTTFS ++ + L L G W+ A
Sbjct: 42 VIGSFLMG---VIYALGEASQVSPEIKALVGVGLLGALTTFSTFSNETLLLMQQGAWLKA 98
Query: 60 F 60
F
Sbjct: 99 F 99
Score = 33.5 bits (75), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G IG R+ ++ + G + PFGTL+ NV + +M + + +A ++
Sbjct: 11 GSIGAVFRYLISIFMIQVFGSS-----FPFGTLMVNVIGSFLMGVIYALGEA--SQVSPE 63
Query: 216 VASGIQFGLLGCLSTVSTFMAE 237
+ + + GLLG L+T STF E
Sbjct: 64 IKALVGVGLLGALTTFSTFSNE 85
>sp|P61390|CRCB1_LACJO Protein CrcB homolog 1 OS=Lactobacillus johnsonii (strain CNCM
I-12250 / La1 / NCC 533) GN=crcB1 PE=3 SV=1
Length = 129
Score = 38.1 bits (87), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 5/86 (5%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWN---QKMLDLTVDGHWV 57
++G FL+ ++ F + + D+LV GL+TG++GS TTFS +N K L+ ++
Sbjct: 39 IIGCFLLAFFTYFFV-EYREGRDWLVTGLSTGFVGSFTTFSSFNLDTLKQLESGMNSQAT 97
Query: 58 LAFL-GFFIGLFLASHSIIFGIETAK 82
+ F FIG A ++ G T +
Sbjct: 98 IYFFSSIFIGFLFAYLGMLVGKRTGR 123
>sp|Q8Y5I0|CRCB2_LISMO Protein CrcB homolog 2 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=crcB2 PE=3 SV=1
Length = 129
Score = 37.7 bits (86), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++G FL+ + + F + S+VS L+ G+ TG++G+ TTFS ++ + L G W+ A
Sbjct: 38 LIGCFLLAFL-MRFLAEKSRVSLVLLNGIGTGFIGAFTTFSAFSVDTIQLVQSGAWLFA 95
>sp|Q6AP26|CRCB_DESPS Protein CrcB homolog OS=Desulfotalea psychrophila (strain LSv54 /
DSM 12343) GN=crcB PE=3 SV=1
Length = 128
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G +G R+ +A LG PFGT IAN++ + L + + + +T
Sbjct: 14 GAVGSLARYAIA------LGTQKIAHAFPFGTFIANLAGCLFIGLLWSFFEKIHIS--HT 65
Query: 216 VASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITI 258
+ GLLG L+T STF E E+ W+ + Y ++I
Sbjct: 66 FRLFLFTGLLGGLTTFSTFSRETYGFFETGEYWQGFGYLFLSI 108
>sp|Q929T6|CRCB2_LISIN Protein CrcB homolog 2 OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=crcB2 PE=3 SV=1
Length = 129
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++G FL+ + + F + S++S L+ G+ TG++G+ TTFS ++ ++L G VLA
Sbjct: 38 LIGCFLLAFI-MPFLAEKSRISLVLLNGIGTGFIGAFTTFSAFSVDTIELLQQGEVVLA 95
>sp|Q39R93|CRCB_GEOMG Protein CrcB homolog OS=Geobacter metallireducens (strain GS-15 /
ATCC 53774 / DSM 7210) GN=crcB PE=3 SV=1
Length = 124
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
+VG+FL+G + F + + L IGL G+LG LTTFS ++ + L DG ++ A
Sbjct: 42 VVGAFLIGLI-MEFSLRTTLIPQELRIGLTIGFLGGLTTFSTFSYETFRLLEDGEFITA 99
>sp|B8CP83|CRCB_SHEPW Protein CrcB homolog OS=Shewanella piezotolerans (strain WP3 / JCM
13877) GN=crcB PE=3 SV=1
Length = 124
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 1 MVGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSFLMG VV+ G +S+VS + + G LG+LTTFS ++ + L L +G+ V A
Sbjct: 42 ILGSFLMG---VVYALGQVSEVSPEIKAFIGVGMLGALTTFSTFSNESLLLMQEGYLVKA 98
Query: 60 FL 61
L
Sbjct: 99 IL 100
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 156 GPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKAVDTKTCNT 215
G IG +R+ ++ L + G PFGTL+ N+ + +M + + + ++
Sbjct: 11 GSIGAVLRYLISILMLQVFGSG-----FPFGTLMVNILGSFLMGVVYALGQV--SEVSPE 63
Query: 216 VASGIQFGLLGCLSTVSTFMAE 237
+ + I G+LG L+T STF E
Sbjct: 64 IKAFIGVGMLGALTTFSTFSNE 85
>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2
SV=1
Length = 856
Score = 36.6 bits (83), Expect = 0.19, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 218 SGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGIL 267
+G QFG+L CL F+ F + + PWRA+ L +L F G+L
Sbjct: 721 AGSQFGILACL-----FVELFQSWQILARPWRAFFKLLAVVLFLFAFGLL 765
>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2
Length = 856
Score = 36.6 bits (83), Expect = 0.19, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 218 SGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGIL 267
+G QFG+L CL F+ F + + PWRA+ L +L F G+L
Sbjct: 721 AGSQFGILACL-----FVELFQSWQILARPWRAFFKLLAVVLFLFAFGLL 765
>sp|Q71XT1|CRCB2_LISMF Protein CrcB homolog 2 OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=crcB2 PE=3 SV=1
Length = 129
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++G FL+ + + F + S++S ++ G+ TG++G+ TTFS ++ + L G W+ A
Sbjct: 38 LIGCFLLAFL-MQFLAEKSRISLVILNGIGTGFIGAFTTFSAFSVDTIQLVQSGAWLFA 95
>sp|P61386|CRCB1_BACC1 Protein CrcB homolog 1 OS=Bacillus cereus (strain ATCC 10987)
GN=crcB1 PE=3 SV=1
Length = 137
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+VG FL+ W + + + ++ G+ TG++GS TTFS ++ + + L W +AF
Sbjct: 44 LVGCFLLAWL-TTYIAQRNILPAEIITGIGTGFIGSFTTFSTFSVETIQLINHSEWSIAF 102
Query: 61 L 61
L
Sbjct: 103 L 103
>sp|Q0HV56|CRCB_SHESR Protein CrcB homolog OS=Shewanella sp. (strain MR-7) GN=crcB PE=3
SV=1
Length = 124
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 2 VGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+GSFLMG V++ G +S +S L + G LG+LTTFS ++ + L L +G W+ A
Sbjct: 43 LGSFLMG---VIYALGQMSHISPELKALIGVGLLGALTTFSTFSNETLLLMQEGDWLKAA 99
Query: 61 LGFFIGL 67
L + L
Sbjct: 100 LNVVLNL 106
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 148 ELWLGCIVGPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKA 207
L L + G IG R+ ++ + G + PFGTL+ NV + +M + + +
Sbjct: 3 NLLLVALGGSIGAVFRYLISIFMIQVFGSS-----FPFGTLLVNVLGSFLMGVIYALGQM 57
Query: 208 VDTKTCNTVASGIQFGLLGCLSTVSTFMAE 237
+ + + I GLLG L+T STF E
Sbjct: 58 --SHISPELKALIGVGLLGALTTFSTFSNE 85
>sp|Q0HIS8|CRCB_SHESM Protein CrcB homolog OS=Shewanella sp. (strain MR-4) GN=crcB PE=3
SV=1
Length = 124
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 2 VGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+GSFLMG V++ G +S +S L + G LG+LTTFS ++ + L L +G W+ A
Sbjct: 43 LGSFLMG---VIYALGQMSHISPELKALIGVGLLGALTTFSTFSNETLLLMQEGDWLKAA 99
Query: 61 LGFFIGL 67
L + L
Sbjct: 100 LNVVLNL 106
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 148 ELWLGCIVGPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKA 207
L L + G IG R+ ++ + G + PFGTL+ NV + +M + + +
Sbjct: 3 NLLLVALGGSIGAVFRYLISIFMIQVFGSS-----FPFGTLLVNVLGSFLMGVIYALGQM 57
Query: 208 VDTKTCNTVASGIQFGLLGCLSTVSTFMAE 237
+ + + I GLLG L+T STF E
Sbjct: 58 --SHISPELKALIGVGLLGALTTFSTFSNE 85
>sp|A0KWW4|CRCB_SHESA Protein CrcB homolog OS=Shewanella sp. (strain ANA-3) GN=crcB PE=3
SV=1
Length = 124
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 2 VGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+GSFLMG V++ G +S +S L + G LG+LTTFS ++ + L L +G W+ A
Sbjct: 43 LGSFLMG---VIYALGQMSHISPELKALIGVGLLGALTTFSTFSNETLLLMQEGDWLKAA 99
Query: 61 LGFFIGL 67
L + L
Sbjct: 100 LNVVLNL 106
Score = 31.6 bits (70), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 148 ELWLGCIVGPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKA 207
L L + G IG R+ ++ + G + PFGTL+ NV + +M + + +
Sbjct: 3 NLLLVALGGSIGAVFRYLISIFMIQVFGSS-----FPFGTLLVNVLGSFLMGVIYALGQM 57
Query: 208 VDTKTCNTVASGIQFGLLGCLSTVSTFMAE 237
+ + + I GLLG L+T STF E
Sbjct: 58 --SHISPELKALIGVGLLGALTTFSTFSNE 85
>sp|B9M837|CRCB_GEOSF Protein CrcB homolog OS=Geobacter sp. (strain FRC-32) GN=crcB
PE=3 SV=1
Length = 124
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++G+FL+G + F + VS L +GL G+LG LTTFS ++ + L DG ++A
Sbjct: 42 IIGAFLIGLI-MEFSLRSTLVSPQLRVGLTIGFLGGLTTFSTFSYETFRLLEDGELLIA 99
>sp|A1RJJ3|CRCB_SHESW Protein CrcB homolog OS=Shewanella sp. (strain W3-18-1) GN=crcB
PE=3 SV=1
Length = 124
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 1 MVGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSF MG V++ G +S +S L + G LG+LTTFS ++ + L L +G W+ A
Sbjct: 42 VIGSFFMG---VIYALGQMSHISPELKALIGVGLLGALTTFSTFSNETLLLLQEGDWLKA 98
Query: 60 FLGFFIGL 67
L + L
Sbjct: 99 ILNVVLNL 106
>sp|A4Y6Z6|CRCB_SHEPC Protein CrcB homolog OS=Shewanella putrefaciens (strain CN-32 /
ATCC BAA-453) GN=crcB PE=3 SV=1
Length = 124
Score = 36.2 bits (82), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 1 MVGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSF MG V++ G +S +S L + G LG+LTTFS ++ + L L +G W+ A
Sbjct: 42 VIGSFFMG---VIYALGQMSHISPELKALIGVGLLGALTTFSTFSNETLLLLQEGDWLKA 98
Query: 60 FLGFFIGL 67
L + L
Sbjct: 99 ILNVVLNL 106
>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1
Length = 855
Score = 35.8 bits (81), Expect = 0.32, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 218 SGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGIL 267
+G QFG+L CL F+ F + + PWRA+ L +L F G+L
Sbjct: 720 AGSQFGILACL-----FVELFQSWQILARPWRAFFKLLAVVLFLFTFGLL 764
>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2
Length = 855
Score = 35.8 bits (81), Expect = 0.32, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 218 SGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITILISFGLGIL 267
+G QFG+L CL F+ F + + PWRA+ L +L F G+L
Sbjct: 720 AGSQFGILACL-----FVELFQSWQILARPWRAFFKLLAVVLFLFTFGLL 764
>sp|Q5HXN6|CRCB_GLUOX Protein CrcB homolog OS=Gluconobacter oxydans (strain 621H) GN=crcB
PE=3 SV=1
Length = 144
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 2 VGSFLMGWWGVVFKGD-ISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+GSF++G++G + D VS+ + + + G G TTFS ++ + LDL + W A
Sbjct: 45 LGSFVIGFFGTLTLADGRYPVSENMRLFVMIGLCGGYTTFSSFSLQTLDLIRNDAWGRAS 104
Query: 61 LGFFIGLFLASHSIIFGIETAKGFRWLLKRYSTSSGKE 98
+ + L ++ G TA GF R + ++ +E
Sbjct: 105 VNVAASVILCIGAVALGHITADGFNTGAIRIAQTATEE 142
>sp|Q9V0X2|CRCB_PYRAB Protein CrcB homolog OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=crcB PE=3 SV=1
Length = 123
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 2 VGSFLMGW-WGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
+ SF++G+ +G++F G +VS I L TG+ G L+TFS ++ + L +G ++LAF
Sbjct: 43 IASFILGYLYGLLFFG--FEVSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAF 100
Query: 61 L 61
+
Sbjct: 101 M 101
>sp|Q11HT1|CRCB_MESSB Protein CrcB homolog OS=Mesorhizobium sp. (strain BNC1) GN=crcB
PE=3 SV=1
Length = 125
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 47/111 (42%), Gaps = 6/111 (5%)
Query: 148 ELWLGCIVGPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKA 207
L L C+ G IG +R GR LG A P+GTL NV+ + M L A
Sbjct: 3 HLMLVCLGGAIGAGMRHLTVTAAGRALGTA-----FPWGTLAVNVAGSFAMGLLVE-ALA 56
Query: 208 VDTKTCNTVASGIQFGLLGCLSTVSTFMAEFNAMRESTSPWRAYAYALITI 258
N + + G+LG +T S F + + E + A AY L ++
Sbjct: 57 RKFSVSNEIRLLLAPGMLGGFTTFSAFSLDVAVLWERGAQSAALAYVLASV 107
>sp|Q815R6|CRCB1_BACCR Protein CrcB homolog 1 OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=crcB1 PE=3 SV=1
Length = 144
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1 MVGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLAF 60
++G F + W + ++ + ++ G+ TG++GS TTFS ++ + + L W +AF
Sbjct: 51 LIGCFFLAWL-TTYIARLNILPSEVITGIGTGFIGSFTTFSTFSVETVQLINHSEWSIAF 109
Query: 61 L 61
L
Sbjct: 110 L 110
>sp|Q8U1H3|CRCB_PYRFU Protein CrcB homolog OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=crcB PE=3 SV=1
Length = 123
Score = 35.8 bits (81), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 2 VGSFLMGW-WGVVFKG-DISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
+ SFL+G+ +G++F G D+S+ S + L TG+ G L+TFS ++ + L +G ++ A
Sbjct: 43 LASFLLGYLYGLIFWGLDVSRESR---LFLGTGFCGGLSTFSTFSYETFSLIREGEYLTA 99
Query: 60 FLGFF 64
L F
Sbjct: 100 LLNIF 104
>sp|A9L270|CRCB_SHEB9 Protein CrcB homolog OS=Shewanella baltica (strain OS195) GN=crcB
PE=3 SV=1
Length = 124
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1 MVGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSFLMG V++ G +S +S L + G LG+LTTFS ++ + L L +G W+ A
Sbjct: 42 VLGSFLMG---VIYALGQMSHISPELKALIGIGLLGALTTFSTFSNETLLLLQEGDWLKA 98
Query: 60 FLGFFIGL 67
L + L
Sbjct: 99 TLNVVLNL 106
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 148 ELWLGCIVGPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKA 207
L L + G IG R+ ++ + G + PFGTL+ NV + +M + + +
Sbjct: 3 NLLLVALGGSIGAVFRYLISIFMIQVFGSS-----FPFGTLLVNVLGSFLMGVIYALGQM 57
Query: 208 VDTKTCNTVASGIQFGLLGCLSTVSTFMAE 237
+ + + I GLLG L+T STF E
Sbjct: 58 --SHISPELKALIGIGLLGALTTFSTFSNE 85
>sp|A6WNG2|CRCB_SHEB8 Protein CrcB homolog OS=Shewanella baltica (strain OS185) GN=crcB
PE=3 SV=1
Length = 124
Score = 35.4 bits (80), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1 MVGSFLMGWWGVVFK-GDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHWVLA 59
++GSFLMG V++ G +S +S L + G LG+LTTFS ++ + L L +G W+ A
Sbjct: 42 VLGSFLMG---VIYALGQMSHISPELKALIGIGLLGALTTFSTFSNETLLLLQEGDWLKA 98
Query: 60 FLGFFIGL 67
L + L
Sbjct: 99 TLNVVLNL 106
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 148 ELWLGCIVGPIGVWIRWFLARLNGRGLGKAGTLRWVPFGTLIANVSAACVMAALATVKKA 207
L L + G IG R+ ++ + G + PFGTL+ NV + +M + + +
Sbjct: 3 NLLLVALGGSIGAVFRYLISIFMIQVFGSS-----FPFGTLLVNVLGSFLMGVIYALGQM 57
Query: 208 VDTKTCNTVASGIQFGLLGCLSTVSTFMAE 237
+ + + I GLLG L+T STF E
Sbjct: 58 --SHISPELKALIGIGLLGALTTFSTFSNE 85
>sp|A5IH85|CRCB_LEGPC Protein CrcB homolog OS=Legionella pneumophila (strain Corby)
GN=crcB PE=3 SV=1
Length = 134
Score = 35.4 bits (80), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 2 VGSFLMGWWGVVFKGDISKVSDYLVIGLNTGYLGSLTTFSGWNQKMLDLTVDGHW 56
+GSFL G++ +V G S + + L TG+LG+ TTFS + + L + G+W
Sbjct: 45 LGSFLAGFFLIVLVGRFSAEESFRLF-LFTGFLGAFTTFSSFAAESLFMFEQGYW 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.139 0.455
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,255,943
Number of Sequences: 539616
Number of extensions: 4092768
Number of successful extensions: 13344
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 228
Number of HSP's that attempted gapping in prelim test: 13070
Number of HSP's gapped (non-prelim): 465
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)