Query 023630
Match_columns 279
No_of_seqs 290 out of 2027
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 10:07:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ls4_A High affinity copper up 13.0 64 0.0022 18.2 0.0 22 253-277 4-25 (26)
2 2lat_A Dolichyl-diphosphooligo 8.2 3.1E+02 0.011 16.6 2.7 16 188-203 9-24 (37)
3 1rkl_A Dolichyl-diphosphooligo 7.8 3.4E+02 0.012 16.4 2.7 17 188-204 9-25 (36)
4 2jo1_A Phospholemman; FXYD1, N 4.2 7.7E+02 0.026 17.1 3.1 11 119-129 24-34 (72)
5 2o7a_A Lysozyme; protein foldi 4.1 3.8E+02 0.013 20.4 1.8 25 35-63 51-75 (124)
6 2jp3_A FXYD domain-containing 3.7 8E+02 0.027 16.8 2.9 10 119-128 25-34 (67)
7 2hgo_A CASSIICOLIN; toxin, dis 3.5 1.6E+02 0.0056 16.2 -0.6 7 220-226 9-15 (27)
8 2o9g_A Aquaporin Z; integral m 3.5 1.7E+03 0.057 18.3 5.6 29 245-273 79-107 (234)
9 2i2j_A Signaling peptide UA159 3.4 3.1E+02 0.011 14.9 0.4 7 226-232 2-8 (26)
10 1swy_A Lysozyme; RB+ binding s 3.0 5.1E+02 0.018 20.2 1.6 23 34-60 108-130 (164)
No 1
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=13.00 E-value=64 Score=18.17 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 023630 253 YALITILISFGLGILIYSVPVWTKG 277 (279)
Q Consensus 253 Y~~~sv~~g~~~~~lg~~~~~w~~g 277 (279)
|..+++++| ..+|+.+..|.++
T Consensus 4 ~l~iavvlG---a~~Gyf~F~~~~~ 25 (26)
T 2ls4_A 4 YLCIAVAAG---AGTGYFLFSWKKX 25 (26)
Confidence 566677666 5677777777653
No 2
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=8.18 E-value=3.1e+02 Score=16.62 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 023630 188 LIANVSAACVMAALAT 203 (279)
Q Consensus 188 l~~NvlG~~llg~l~~ 203 (279)
.++|.+|++.+.++..
T Consensus 9 ~lan~lG~~~~~LIVl 24 (37)
T 2lat_A 9 IFANMLGVSLFLLVVL 24 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999988876543
No 3
>1rkl_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 4 kDa subunit; membrane protein; NMR {Synthetic} SCOP: f.23.30.1
Probab=7.84 E-value=3.4e+02 Score=16.39 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023630 188 LIANVSAACVMAALATV 204 (279)
Q Consensus 188 l~~NvlG~~llg~l~~~ 204 (279)
.++|.+|++.+.++...
T Consensus 9 ~lan~lG~~~~~LIvlY 25 (36)
T 1rkl_A 9 SLAITFGIVMMTLIVIY 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57899999888766443
No 4
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=4.16 E-value=7.7e+02 Score=17.10 Aligned_cols=11 Identities=18% Similarity=0.274 Sum_probs=5.3
Q ss_pred HHHHHHHHHHH
Q 023630 119 LALTLLLCALW 129 (279)
Q Consensus 119 ~~~~~~l~~l~ 129 (279)
.++++++|++.
T Consensus 24 A~vLfi~GI~i 34 (72)
T 2jo1_A 24 AGILFILGILI 34 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33445555543
No 5
>2o7a_A Lysozyme; protein folding, protein stability, circular permutant, hydrolase; HET: SME; 0.84A {Enterobacteria phage T4}
Probab=4.14 E-value=3.8e+02 Score=20.40 Aligned_cols=25 Identities=16% Similarity=0.335 Sum_probs=18.0
Q ss_pred CccccchhHHHHHHHHhhcChHHHHHHHH
Q 023630 35 GSLTTFSGWNQKMLDLTVDGHWVLAFLGF 63 (279)
Q Consensus 35 GsfTTFSsf~~e~~~l~~~g~~~~a~~~~ 63 (279)
|+|.+||| +...+++|+|..|.-.+
T Consensus 51 g~l~~Fst----llk~lnagD~~~Aa~el 75 (124)
T 2o7a_A 51 TGVAGFTN----SLRMLQQKRWDEAAVNL 75 (124)
T ss_dssp HHHHTCHH----HHHHHHTTCHHHHHHHH
T ss_pred hhhcchhH----HHHHHHCcCHHHHHHHH
Confidence 56778888 66677889987764443
No 6
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.72 E-value=8e+02 Score=16.79 Aligned_cols=10 Identities=10% Similarity=-0.167 Sum_probs=5.1
Q ss_pred HHHHHHHHHH
Q 023630 119 LALTLLLCAL 128 (279)
Q Consensus 119 ~~~~~~l~~l 128 (279)
.++++++|++
T Consensus 25 A~vLfi~GI~ 34 (67)
T 2jp3_A 25 GGLLCIAGIA 34 (67)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3345555654
No 7
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=3.53 E-value=1.6e+02 Score=16.21 Aligned_cols=7 Identities=29% Similarity=0.506 Sum_probs=4.7
Q ss_pred HHHhhcc
Q 023630 220 IQFGLLG 226 (279)
Q Consensus 220 l~~GfcG 226 (279)
+..||||
T Consensus 9 fgngfcg 15 (27)
T 2hgo_A 9 FGNGFCG 15 (27)
T ss_dssp ETTTEEE
T ss_pred ecCcccc
Confidence 4567776
No 8
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=3.51 E-value=1.7e+03 Score=18.34 Aligned_cols=29 Identities=10% Similarity=0.194 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023630 245 TSPWRAYAYALITILISFGLGILIYSVPV 273 (279)
Q Consensus 245 ~~~~~a~~Y~~~sv~~g~~~~~lg~~~~~ 273 (279)
-.+.+...|.+.+++.+++...+.+..+.
T Consensus 79 ~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~ 107 (234)
T 2o9g_A 79 FPAKEVVGYVIAQVVGGIVAAALLYLIAS 107 (234)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677999999999999999988887764
No 9
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=3.35 E-value=3.1e+02 Score=14.85 Aligned_cols=7 Identities=57% Similarity=0.605 Sum_probs=4.1
Q ss_pred chhhhHh
Q 023630 226 GCLSTVS 232 (279)
Q Consensus 226 G~lTTfS 232 (279)
|+++||=
T Consensus 2 gslstff 8 (26)
T 2i2j_A 2 GSLSTFF 8 (26)
T ss_pred ccHHHHH
Confidence 5666653
No 10
>1swy_A Lysozyme; RB+ binding sites, AB initio direct methods, hydrolase; 1.06A {Enterobacteria phage T4} SCOP: d.2.1.3 PDB: 1swz_A 1sx2_A 1sx7_A 3fad_A 3f9l_A 2nzn_A 3c8s_A 3cdr_A 2nzb_A 3c8q_A 3c7w_A 3cdq_A 3f8v_A 1l34_A 3c7y_A 2lzm_A 1t6h_A* 1lyd_A 3lzm_A 4lzm_A ...
Probab=2.99 E-value=5.1e+02 Score=20.20 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=15.6
Q ss_pred cCccccchhHHHHHHHHhhcChHHHHH
Q 023630 34 LGSLTTFSGWNQKMLDLTVDGHWVLAF 60 (279)
Q Consensus 34 cGsfTTFSsf~~e~~~l~~~g~~~~a~ 60 (279)
+|++.+||| +...+++|+|..|.
T Consensus 108 ~~~~~~fst----ll~~ln~Gd~~~A~ 130 (164)
T 1swy_A 108 ETGVAGFTN----SLRMLQQKRWDEAA 130 (164)
T ss_dssp HHHHHTCHH----HHHHHHTTCHHHHH
T ss_pred CccccchhH----HHHHHHCCCHHHHH
Confidence 456667888 45666888886653
Done!