Query 023630
Match_columns 279
No_of_seqs 290 out of 2027
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 10:07:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023630.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023630hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2c4ba2 g.3.2.1 (A:117-144) Tr 7.8 35 0.0025 17.7 -0.2 6 31-36 23-28 (28)
2 d1rc2a_ f.19.1.1 (A:) Aquapori 5.2 2.8E+02 0.02 20.9 4.0 33 243-275 74-106 (231)
3 d1fs0g_ c.49.2.1 (G:) ATP synt 3.1 1.2E+02 0.0091 23.0 -0.0 14 25-38 59-74 (230)
4 d1ymga1 f.19.1.1 (A:6-239) Aqu 3.0 6.4E+02 0.047 18.7 4.5 31 243-273 74-104 (234)
5 d1v54c_ f.25.1.1 (C:) Mitochon 2.9 9.9E+02 0.072 18.0 5.9 19 22-40 11-29 (259)
6 d2jdig1 c.49.2.1 (G:1-272) ATP 2.8 1.4E+02 0.01 23.2 -0.1 7 32-38 76-82 (272)
7 d1vf5c3 f.23.23.1 (C:250-286) 2.7 5.1E+02 0.037 14.2 2.5 19 249-267 7-25 (37)
8 d1j4na_ f.19.1.1 (A:) Aquapori 2.1 9.3E+02 0.068 17.8 4.4 31 244-274 90-120 (249)
9 d1dp3a_ a.55.1.2 (A:) DNA-bind 1.9 4.7E+02 0.034 15.6 1.5 12 227-238 33-44 (55)
10 d1lu0a_ g.3.2.1 (A:) Trypsin i 1.7 2.9E+02 0.021 14.4 0.1 4 32-35 26-29 (29)
No 1
>d2c4ba2 g.3.2.1 (A:117-144) Trypsin inhibitor {Jumping cucumber (Ecballium elaterium) [TaxId: 3679]}
Probab=7.80 E-value=35 Score=17.68 Aligned_cols=6 Identities=50% Similarity=1.082 Sum_probs=4.0
Q ss_pred HhhcCc
Q 023630 31 TGYLGS 36 (279)
Q Consensus 31 tGfcGs 36 (279)
-|||||
T Consensus 23 ngfcgs 28 (28)
T d2c4ba2 23 NGFCGS 28 (28)
T ss_dssp TSBEEC
T ss_pred CCcCCC
Confidence 377775
No 2
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=5.15 E-value=2.8e+02 Score=20.85 Aligned_cols=33 Identities=9% Similarity=0.121 Sum_probs=26.6
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023630 243 ESTSPWRAYAYALITILISFGLGILIYSVPVWT 275 (279)
Q Consensus 243 ~~~~~~~a~~Y~~~sv~~g~~~~~lg~~~~~w~ 275 (279)
++-.+.++..|.+.+++.+++...+.+..+...
T Consensus 74 g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~i~~~~ 106 (231)
T d1rc2a_ 74 GRFPAKEVVGYVIAQVVGGIVAAALLYLIASGK 106 (231)
T ss_dssp TCSCTTTHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344567799999999999999999988876543
No 3
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]}
Probab=3.10 E-value=1.2e+02 Score=23.03 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=10.1
Q ss_pred HHHHHHH--hhcCccc
Q 023630 25 LVIGLNT--GYLGSLT 38 (279)
Q Consensus 25 l~~~l~t--GfcGsfT 38 (279)
+.+.+++ |+||+|-
T Consensus 59 ~~ivitSDrGLCG~~N 74 (230)
T d1fs0g_ 59 GYLVVSTDRGLCGGLN 74 (230)
T ss_dssp EEEEECCSSSCSTTHH
T ss_pred EEEEEecCcccccccc
Confidence 3455666 9999974
No 4
>d1ymga1 f.19.1.1 (A:6-239) Aquaporin-0 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.98 E-value=6.4e+02 Score=18.70 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=24.9
Q ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023630 243 ESTSPWRAYAYALITILISFGLGILIYSVPV 273 (279)
Q Consensus 243 ~~~~~~~a~~Y~~~sv~~g~~~~~lg~~~~~ 273 (279)
++-++.++..|.+.+++.+++...+.+..+.
T Consensus 74 g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~ 104 (234)
T d1ymga1 74 SQMSLLRAICYMVAQLLGAVAGAAVLYSVTP 104 (234)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cCCChhheeeeeehHHHHHHHHHHHHHHHcC
Confidence 3445778999999999999999888877654
No 5
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.87 E-value=9.9e+02 Score=17.98 Aligned_cols=19 Identities=5% Similarity=-0.199 Sum_probs=10.1
Q ss_pred chHHHHHHHHhhcCccccc
Q 023630 22 SDYLVIGLNTGYLGSLTTF 40 (279)
Q Consensus 22 ~~~l~~~l~tGfcGsfTTF 40 (279)
++|+.+..+.|........
T Consensus 11 ~SpWP~~~s~~~~~~~~g~ 29 (259)
T d1v54c_ 11 PSPWPLTGALSALLMTSGL 29 (259)
T ss_dssp CCSHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHH
Confidence 4566666666654433333
No 6
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.85 E-value=1.4e+02 Score=23.25 Aligned_cols=7 Identities=29% Similarity=0.729 Sum_probs=6.1
Q ss_pred hhcCccc
Q 023630 32 GYLGSLT 38 (279)
Q Consensus 32 GfcGsfT 38 (279)
|+||+|-
T Consensus 76 GLcG~fN 82 (272)
T d2jdig1 76 GLCGAIH 82 (272)
T ss_dssp CCSTTHH
T ss_pred CCCCCcc
Confidence 9999974
No 7
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=2.72 E-value=5.1e+02 Score=14.19 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023630 249 RAYAYALITILISFGLGIL 267 (279)
Q Consensus 249 ~a~~Y~~~sv~~g~~~~~l 267 (279)
.+++-+..++.++.++.++
T Consensus 7 ~gl~~F~~~v~laQi~lVl 25 (37)
T d1vf5c3 7 KWMIAFICLVMLAQLMLIL 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566667777777766543
No 8
>d1j4na_ f.19.1.1 (A:) Aquaporin-1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.13 E-value=9.3e+02 Score=17.76 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023630 244 STSPWRAYAYALITILISFGLGILIYSVPVW 274 (279)
Q Consensus 244 ~~~~~~a~~Y~~~sv~~g~~~~~lg~~~~~w 274 (279)
+-++.++..|.+.+++.+++...+.+..+..
T Consensus 90 ~i~~~~~~~Yi~aQ~lGa~~g~~~~~~~~~~ 120 (249)
T d1j4na_ 90 QISVLRAIMYIIAQCVGAIVATAILSGITSS 120 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccchhheeeeeeHHHHHHHHHHhhheeeccc
Confidence 3457789999999999998888887776543
No 9
>d1dp3a_ a.55.1.2 (A:) DNA-binding domain (fragment?) of the TraM protein {Escherichia coli [TaxId: 562]}
Probab=1.86 E-value=4.7e+02 Score=15.55 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=0.0
Q ss_pred hhhhHhHHHHHH
Q 023630 227 CLSTVSTFMAEF 238 (279)
Q Consensus 227 ~lTTfSTf~~E~ 238 (279)
+||..||+-.|+
T Consensus 33 S~Ss~ssMLlEL 44 (55)
T d1dp3a_ 33 SFSSISTMLLEL 44 (55)
T ss_dssp CHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
No 10
>d1lu0a_ g.3.2.1 (A:) Trypsin inhibitor {Squash (Cucurbita maxima) [TaxId: 3661]}
Probab=1.66 E-value=2.9e+02 Score=14.40 Aligned_cols=4 Identities=75% Similarity=1.622 Sum_probs=0.0
Q ss_pred hhcC
Q 023630 32 GYLG 35 (279)
Q Consensus 32 GfcG 35 (279)
||||
T Consensus 26 G~CG 29 (29)
T d1lu0a_ 26 GYCG 29 (29)
T ss_dssp SBBC
T ss_pred ccCC
Done!