Query 023631
Match_columns 279
No_of_seqs 224 out of 1622
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0840 ATP-dependent Clp prot 100.0 3.4E-70 7.5E-75 488.6 21.1 261 14-277 12-273 (275)
2 CHL00028 clpP ATP-dependent Cl 100.0 2.4E-60 5.2E-65 419.8 22.9 197 68-264 1-198 (200)
3 PRK12552 ATP-dependent Clp pro 100.0 2.7E-60 5.9E-65 423.9 21.7 197 68-264 1-216 (222)
4 COG0740 ClpP Protease subunit 100.0 2.9E-60 6.2E-65 416.1 20.9 182 86-267 16-197 (200)
5 PRK14513 ATP-dependent Clp pro 100.0 5.2E-58 1.1E-62 404.8 22.7 182 85-266 15-196 (201)
6 PRK14514 ATP-dependent Clp pro 100.0 4.2E-57 9.1E-62 403.8 21.8 190 72-263 31-220 (221)
7 PRK12551 ATP-dependent Clp pro 100.0 1.1E-55 2.3E-60 389.0 22.0 182 85-266 13-194 (196)
8 PRK00277 clpP ATP-dependent Cl 100.0 4.5E-53 9.8E-58 373.5 22.8 197 68-264 1-198 (200)
9 TIGR00493 clpP ATP-dependent C 100.0 4.6E-51 9.9E-56 358.4 21.8 177 85-261 14-190 (191)
10 PRK14512 ATP-dependent Clp pro 100.0 3.8E-49 8.1E-54 347.9 21.0 176 88-263 14-189 (197)
11 PF00574 CLP_protease: Clp pro 100.0 1.2E-48 2.6E-53 338.6 17.1 178 86-263 5-182 (182)
12 PRK12553 ATP-dependent Clp pro 100.0 8.9E-48 1.9E-52 341.4 20.3 180 85-264 23-204 (207)
13 cd07017 S14_ClpP_2 Caseinolyti 100.0 6.9E-46 1.5E-50 319.8 17.8 171 89-259 1-171 (171)
14 cd07013 S14_ClpP Caseinolytic 100.0 6.2E-45 1.3E-49 311.7 19.4 162 98-259 1-162 (162)
15 cd07016 S14_ClpP_1 Caseinolyti 100.0 3.6E-34 7.8E-39 243.3 18.7 156 99-259 2-160 (160)
16 cd07015 Clp_protease_NfeD Nodu 100.0 7.3E-33 1.6E-37 239.4 17.9 157 99-264 3-167 (172)
17 cd00394 Clp_protease_like Case 100.0 4.5E-31 9.8E-36 223.6 17.9 159 99-259 1-161 (161)
18 cd07020 Clp_protease_NfeD_1 No 100.0 2.6E-28 5.7E-33 213.0 18.0 161 99-263 3-166 (187)
19 cd07021 Clp_protease_NfeD_like 99.9 1E-25 2.2E-30 196.0 17.5 157 99-263 3-172 (178)
20 TIGR00706 SppA_dom signal pept 99.9 5.1E-21 1.1E-25 169.6 15.9 167 98-268 3-201 (207)
21 cd07023 S49_Sppa_N_C Signal pe 99.9 1.1E-20 2.5E-25 167.0 15.6 165 98-265 3-203 (208)
22 cd07014 S49_SppA Signal peptid 99.8 3.9E-20 8.4E-25 159.8 15.1 147 110-265 23-172 (177)
23 COG0616 SppA Periplasmic serin 99.8 2.1E-20 4.5E-25 175.9 14.4 167 98-267 62-267 (317)
24 TIGR00705 SppA_67K signal pept 99.8 6.5E-20 1.4E-24 184.9 18.0 165 99-266 312-515 (584)
25 cd07022 S49_Sppa_36K_type Sign 99.8 1.1E-19 2.4E-24 161.7 15.8 154 109-266 25-210 (214)
26 cd07019 S49_SppA_1 Signal pept 99.8 1.8E-18 3.8E-23 153.8 16.1 165 99-266 4-207 (211)
27 PRK10949 protease 4; Provision 99.8 1.5E-18 3.2E-23 175.9 15.5 169 98-269 329-536 (618)
28 PRK11778 putative inner membra 99.7 4.4E-17 9.5E-22 153.8 14.5 163 98-267 93-291 (330)
29 cd07018 S49_SppA_67K_type Sign 99.7 4.3E-17 9.2E-22 146.0 13.6 159 104-266 24-217 (222)
30 COG1030 NfeD Membrane-bound se 99.7 4E-16 8.8E-21 150.5 14.2 158 97-262 28-188 (436)
31 PF01972 SDH_sah: Serine dehyd 99.5 4.2E-13 9E-18 123.1 16.4 148 101-255 67-241 (285)
32 TIGR00705 SppA_67K signal pept 99.3 1.2E-11 2.6E-16 125.2 14.0 154 109-265 76-272 (584)
33 PF01343 Peptidase_S49: Peptid 99.3 5.8E-12 1.2E-16 106.8 9.1 113 151-266 2-144 (154)
34 PRK10949 protease 4; Provision 99.3 7E-11 1.5E-15 120.2 13.9 156 108-266 94-292 (618)
35 cd06558 crotonase-like Crotona 98.9 3E-08 6.5E-13 85.7 13.6 141 106-265 23-184 (195)
36 PRK07511 enoyl-CoA hydratase; 98.7 5.8E-07 1.3E-11 82.0 14.8 148 99-265 15-189 (260)
37 PRK05869 enoyl-CoA hydratase; 98.7 6.7E-07 1.5E-11 80.2 14.9 148 99-265 20-190 (222)
38 PRK06688 enoyl-CoA hydratase; 98.7 5.1E-07 1.1E-11 82.2 14.3 146 100-264 18-186 (259)
39 PRK06495 enoyl-CoA hydratase; 98.7 6.6E-07 1.4E-11 81.7 14.6 144 99-264 16-184 (257)
40 PRK08258 enoyl-CoA hydratase; 98.7 8.6E-07 1.9E-11 81.8 15.2 146 100-264 30-204 (277)
41 PRK03580 carnitinyl-CoA dehydr 98.6 8.2E-07 1.8E-11 81.2 14.2 148 99-265 15-185 (261)
42 COG3904 Predicted periplasmic 98.6 6.6E-07 1.4E-11 79.4 12.3 157 95-258 72-236 (245)
43 PRK11423 methylmalonyl-CoA dec 98.6 9.8E-07 2.1E-11 80.9 13.4 147 99-265 16-187 (261)
44 PRK06143 enoyl-CoA hydratase; 98.6 1.4E-06 3E-11 79.7 14.3 147 99-265 19-190 (256)
45 PRK09674 enoyl-CoA hydratase-i 98.6 1.5E-06 3.3E-11 79.2 14.2 148 99-265 14-183 (255)
46 PRK06190 enoyl-CoA hydratase; 98.6 2.2E-06 4.7E-11 78.6 15.3 147 99-264 16-184 (258)
47 PRK06210 enoyl-CoA hydratase; 98.6 1.1E-06 2.3E-11 80.8 13.0 146 99-264 18-198 (272)
48 PRK09076 enoyl-CoA hydratase; 98.6 2.3E-06 5.1E-11 78.1 15.0 146 100-265 16-186 (258)
49 PRK05981 enoyl-CoA hydratase; 98.5 1.9E-06 4.1E-11 78.9 14.2 141 106-265 28-194 (266)
50 PF00378 ECH: Enoyl-CoA hydrat 98.5 1.7E-06 3.6E-11 78.1 13.5 145 100-265 11-181 (245)
51 PRK08138 enoyl-CoA hydratase; 98.5 2.2E-06 4.8E-11 78.4 14.4 141 106-265 32-189 (261)
52 TIGR03210 badI 2-ketocyclohexa 98.5 1.9E-06 4E-11 78.7 13.7 138 106-264 26-184 (256)
53 PRK08150 enoyl-CoA hydratase; 98.5 2.2E-06 4.8E-11 78.3 14.1 140 106-266 26-184 (255)
54 PRK06023 enoyl-CoA hydratase; 98.5 2.6E-06 5.7E-11 77.5 14.5 148 99-265 18-188 (251)
55 PRK05980 enoyl-CoA hydratase; 98.5 1.7E-06 3.7E-11 79.0 13.1 147 99-264 15-190 (260)
56 PRK07658 enoyl-CoA hydratase; 98.5 2.3E-06 5E-11 77.9 13.9 141 106-265 25-185 (257)
57 PLN02600 enoyl-CoA hydratase 98.5 2.8E-06 6.1E-11 77.4 14.4 141 106-265 19-179 (251)
58 PRK05809 3-hydroxybutyryl-CoA 98.5 2.4E-06 5.2E-11 78.0 13.5 138 106-264 28-187 (260)
59 PRK07110 polyketide biosynthes 98.5 2.4E-06 5.3E-11 77.7 13.4 147 100-265 18-185 (249)
60 PRK07938 enoyl-CoA hydratase; 98.5 2.5E-06 5.4E-11 77.6 13.4 144 99-264 14-181 (249)
61 TIGR01929 menB naphthoate synt 98.5 2.4E-06 5.2E-11 78.2 13.4 145 100-265 16-188 (259)
62 PRK07509 enoyl-CoA hydratase; 98.5 3E-06 6.6E-11 77.3 14.0 144 99-261 15-189 (262)
63 PRK06494 enoyl-CoA hydratase; 98.5 4.7E-06 1E-10 76.2 15.0 140 106-264 28-184 (259)
64 PRK08260 enoyl-CoA hydratase; 98.5 2.8E-06 6.1E-11 79.2 13.7 146 100-264 17-203 (296)
65 TIGR03189 dienoyl_CoA_hyt cycl 98.5 4.5E-06 9.7E-11 76.1 14.8 144 99-262 13-176 (251)
66 PRK07396 dihydroxynaphthoic ac 98.5 3.5E-06 7.6E-11 77.7 14.2 139 106-264 37-197 (273)
67 PLN02921 naphthoate synthase 98.5 3.2E-06 7E-11 80.3 14.2 148 99-265 79-252 (327)
68 PRK09245 enoyl-CoA hydratase; 98.5 4.3E-06 9.4E-11 76.6 14.5 141 106-265 27-194 (266)
69 PRK07854 enoyl-CoA hydratase; 98.5 4.1E-06 8.9E-11 76.0 14.1 143 99-261 12-173 (243)
70 PLN02664 enoyl-CoA hydratase/d 98.5 3.6E-06 7.9E-11 77.6 13.9 145 99-262 20-199 (275)
71 TIGR02280 PaaB1 phenylacetate 98.5 4E-06 8.7E-11 76.4 14.0 139 106-265 23-184 (256)
72 PLN03230 acetyl-coenzyme A car 98.5 1.7E-06 3.7E-11 84.0 12.0 131 103-264 199-339 (431)
73 PLN02888 enoyl-CoA hydratase 98.5 4.6E-06 1E-10 76.6 14.4 147 100-265 23-190 (265)
74 PRK12319 acetyl-CoA carboxylas 98.5 3.2E-06 6.8E-11 77.8 13.0 137 96-263 69-215 (256)
75 PRK07327 enoyl-CoA hydratase; 98.5 4E-06 8.8E-11 77.0 13.8 146 100-265 25-197 (268)
76 PRK05724 acetyl-CoA carboxylas 98.5 2.1E-06 4.6E-11 81.1 12.1 138 95-263 121-268 (319)
77 PRK06144 enoyl-CoA hydratase; 98.4 5E-06 1.1E-10 76.2 14.3 141 106-265 32-194 (262)
78 PLN03214 probable enoyl-CoA hy 98.4 3.1E-06 6.7E-11 78.4 12.9 149 99-265 24-199 (278)
79 PRK06127 enoyl-CoA hydratase; 98.4 5.5E-06 1.2E-10 76.2 14.4 147 99-264 23-196 (269)
80 PRK07468 enoyl-CoA hydratase; 98.4 3.8E-06 8.3E-11 76.9 13.3 139 106-264 29-189 (262)
81 TIGR00513 accA acetyl-CoA carb 98.4 4.7E-06 1E-10 78.7 14.0 138 96-264 122-269 (316)
82 PRK08140 enoyl-CoA hydratase; 98.4 6.9E-06 1.5E-10 75.0 14.7 140 106-265 28-190 (262)
83 PRK08139 enoyl-CoA hydratase; 98.4 7.4E-06 1.6E-10 75.3 14.8 147 99-265 23-194 (266)
84 PRK07260 enoyl-CoA hydratase; 98.4 4.9E-06 1.1E-10 75.8 13.5 145 100-265 15-189 (255)
85 PRK07657 enoyl-CoA hydratase; 98.4 6.3E-06 1.4E-10 75.3 14.3 146 99-265 16-188 (260)
86 PRK06142 enoyl-CoA hydratase; 98.4 6.2E-06 1.3E-10 75.8 14.2 144 100-262 19-197 (272)
87 PRK05862 enoyl-CoA hydratase; 98.4 5.8E-06 1.3E-10 75.4 13.9 141 106-265 28-185 (257)
88 PRK05864 enoyl-CoA hydratase; 98.4 4E-06 8.7E-11 77.4 12.9 148 100-265 23-201 (276)
89 PRK06213 enoyl-CoA hydratase; 98.4 7.8E-06 1.7E-10 73.3 14.3 137 106-265 26-183 (229)
90 PRK05995 enoyl-CoA hydratase; 98.4 7E-06 1.5E-10 75.0 14.2 139 106-264 28-188 (262)
91 PRK06072 enoyl-CoA hydratase; 98.4 9.2E-06 2E-10 73.9 14.8 142 98-259 11-173 (248)
92 PRK06563 enoyl-CoA hydratase; 98.4 5E-06 1.1E-10 75.8 13.0 147 99-265 11-183 (255)
93 PRK08290 enoyl-CoA hydratase; 98.4 4E-06 8.7E-11 78.1 12.5 138 106-264 28-206 (288)
94 PRK08252 enoyl-CoA hydratase; 98.4 1.1E-05 2.4E-10 73.5 15.0 147 100-265 16-182 (254)
95 CHL00198 accA acetyl-CoA carbo 98.4 4.7E-06 1E-10 78.8 12.5 138 96-264 125-272 (322)
96 PRK08788 enoyl-CoA hydratase; 98.4 7.8E-06 1.7E-10 76.3 13.7 141 106-265 40-212 (287)
97 PRK08259 enoyl-CoA hydratase; 98.4 7.8E-06 1.7E-10 74.6 13.4 149 99-266 15-185 (254)
98 PRK09120 p-hydroxycinnamoyl Co 98.4 8.8E-06 1.9E-10 75.2 13.6 141 106-265 32-195 (275)
99 PRK07799 enoyl-CoA hydratase; 98.4 1E-05 2.2E-10 74.1 13.7 149 99-266 17-192 (263)
100 PRK08321 naphthoate synthase; 98.3 1.3E-05 2.8E-10 75.1 14.7 147 99-265 37-227 (302)
101 PRK05674 gamma-carboxygeranoyl 98.3 1.2E-05 2.6E-10 73.9 13.5 139 106-264 30-190 (265)
102 PRK12478 enoyl-CoA hydratase; 98.3 7.1E-06 1.5E-10 76.8 12.1 144 99-265 17-200 (298)
103 TIGR03200 dearomat_oah 6-oxocy 98.3 1.7E-05 3.8E-10 76.1 14.8 139 106-265 52-215 (360)
104 PRK07112 polyketide biosynthes 98.3 1.6E-05 3.4E-10 72.6 13.8 137 106-264 28-185 (255)
105 PRK08272 enoyl-CoA hydratase; 98.3 1.5E-05 3.3E-10 74.5 13.2 145 99-265 22-215 (302)
106 PLN02267 enoyl-CoA hydratase/i 98.3 4E-05 8.6E-10 69.5 15.3 145 99-262 12-184 (239)
107 PRK05870 enoyl-CoA hydratase; 98.2 1.1E-05 2.4E-10 73.4 11.4 133 106-260 27-181 (249)
108 PRK07659 enoyl-CoA hydratase; 98.2 1.9E-05 4E-10 72.3 13.0 144 100-264 19-187 (260)
109 PLN03229 acetyl-coenzyme A car 98.2 1.5E-05 3.3E-10 81.9 12.8 137 96-263 213-359 (762)
110 KOG1680 Enoyl-CoA hydratase [L 98.2 1.1E-05 2.4E-10 74.5 10.6 145 98-264 48-217 (290)
111 COG1024 CaiD Enoyl-CoA hydrata 98.1 3.9E-05 8.4E-10 69.9 12.7 138 105-263 28-187 (257)
112 PRK07827 enoyl-CoA hydratase; 98.1 6.2E-05 1.4E-09 68.7 13.5 141 99-261 18-187 (260)
113 PLN02157 3-hydroxyisobutyryl-C 98.1 8E-05 1.7E-09 72.7 14.8 148 98-265 48-223 (401)
114 TIGR02440 FadJ fatty oxidation 98.1 6.4E-05 1.4E-09 78.1 14.4 139 106-264 26-188 (699)
115 PLN02988 3-hydroxyisobutyryl-C 98.1 9.6E-05 2.1E-09 71.7 14.5 147 98-264 20-194 (381)
116 PRK08184 benzoyl-CoA-dihydrodi 98.1 3.6E-05 7.9E-10 77.9 12.0 142 106-264 49-218 (550)
117 PLN02874 3-hydroxyisobutyryl-C 98.1 8.5E-05 1.9E-09 71.9 13.9 148 98-265 22-195 (379)
118 PRK11730 fadB multifunctional 98.1 8.6E-05 1.9E-09 77.3 14.9 147 99-264 19-192 (715)
119 TIGR02437 FadB fatty oxidation 98.1 8.5E-05 1.8E-09 77.4 14.8 146 99-264 19-192 (714)
120 PLN02851 3-hydroxyisobutyryl-C 98.0 0.00011 2.3E-09 71.9 14.4 150 96-265 51-228 (407)
121 PRK05617 3-hydroxyisobutyryl-C 98.0 4.1E-05 8.9E-10 73.1 11.2 144 99-265 15-190 (342)
122 TIGR03134 malonate_gamma malon 98.0 0.00014 3E-09 66.4 13.1 132 106-265 45-192 (238)
123 PRK11154 fadJ multifunctional 98.0 0.00014 3.1E-09 75.7 14.8 147 98-264 17-193 (708)
124 TIGR03222 benzo_boxC benzoyl-C 97.9 0.00011 2.4E-09 74.4 12.1 142 106-264 45-214 (546)
125 TIGR02441 fa_ox_alpha_mit fatt 97.8 0.00048 1E-08 72.1 14.2 136 106-262 38-198 (737)
126 TIGR01117 mmdA methylmalonyl-C 97.8 0.00021 4.5E-09 71.9 11.0 143 103-265 328-484 (512)
127 TIGR03222 benzo_boxC benzoyl-C 97.7 0.00078 1.7E-08 68.3 13.9 143 106-265 295-468 (546)
128 PLN02820 3-methylcrotonyl-CoA 97.3 0.0016 3.5E-08 66.3 10.9 151 104-264 380-542 (569)
129 PF01039 Carboxyl_trans: Carbo 97.3 0.00041 8.8E-09 69.4 6.5 148 104-265 308-467 (493)
130 PRK08184 benzoyl-CoA-dihydrodi 97.3 0.0023 5E-08 65.0 11.1 144 106-265 299-472 (550)
131 PRK05654 acetyl-CoA carboxylas 97.2 0.0035 7.5E-08 58.9 11.4 128 102-267 133-271 (292)
132 TIGR00515 accD acetyl-CoA carb 97.2 0.0033 7.1E-08 58.9 10.8 128 102-267 132-270 (285)
133 COG0825 AccA Acetyl-CoA carbox 97.1 0.0025 5.4E-08 59.6 8.9 144 89-268 119-272 (317)
134 KOG1681 Enoyl-CoA isomerase [L 96.4 0.0012 2.6E-08 60.0 1.2 104 145-266 116-219 (292)
135 TIGR03133 malonate_beta malona 96.2 0.035 7.5E-07 51.8 9.5 94 101-196 70-177 (274)
136 PRK07189 malonate decarboxylas 95.9 0.046 9.9E-07 51.6 8.8 93 101-196 79-186 (301)
137 COG4799 Acetyl-CoA carboxylase 95.8 0.029 6.2E-07 56.5 7.4 93 103-197 337-441 (526)
138 KOG1679 Enoyl-CoA hydratase [L 95.5 0.028 6E-07 50.9 5.7 136 110-268 59-218 (291)
139 CHL00174 accD acetyl-CoA carbo 95.0 0.13 2.8E-06 48.5 8.8 128 102-267 145-284 (296)
140 PF06833 MdcE: Malonate decarb 94.8 0.22 4.9E-06 45.4 9.4 112 123-261 60-186 (234)
141 KOG1682 Enoyl-CoA isomerase [L 94.8 0.09 2E-06 47.3 6.6 103 146-268 116-218 (287)
142 COG0447 MenB Dihydroxynaphthoi 94.6 0.084 1.8E-06 47.9 6.0 134 108-265 45-207 (282)
143 PLN02820 3-methylcrotonyl-CoA 92.6 0.85 1.8E-05 46.8 10.0 90 102-195 141-244 (569)
144 TIGR01117 mmdA methylmalonyl-C 89.2 2.5 5.5E-05 42.7 9.6 92 101-196 93-194 (512)
145 PF01039 Carboxyl_trans: Carbo 84.6 1.6 3.4E-05 43.9 5.2 92 101-196 68-171 (493)
146 cd06567 Peptidase_S41 C-termin 80.2 11 0.00023 33.2 8.3 77 100-178 64-167 (224)
147 KOG0016 Enoyl-CoA hydratase/is 80.1 26 0.00057 32.6 10.9 99 147-264 99-197 (266)
148 COG0777 AccD Acetyl-CoA carbox 79.5 10 0.00022 35.6 8.1 125 101-267 133-272 (294)
149 PF08496 Peptidase_S49_N: Pept 78.4 3.6 7.7E-05 35.3 4.5 42 99-142 102-146 (155)
150 TIGR00225 prc C-terminal pepti 71.6 15 0.00032 34.8 7.2 77 100-178 156-257 (334)
151 KOG1684 Enoyl-CoA hydratase [L 70.9 16 0.00036 35.6 7.3 100 96-195 47-180 (401)
152 cd07560 Peptidase_S41_CPP C-te 70.4 20 0.00043 31.8 7.4 69 109-178 61-154 (211)
153 COG0793 Prc Periplasmic protea 68.4 15 0.00033 36.0 6.7 70 108-178 215-310 (406)
154 PLN00049 carboxyl-terminal pro 67.3 20 0.00044 34.8 7.3 69 107-176 205-300 (389)
155 PRK11186 carboxy-terminal prot 66.9 18 0.00039 38.0 7.2 68 108-176 365-458 (667)
156 cd07561 Peptidase_S41_CPP_like 64.1 29 0.00062 31.8 7.3 45 108-153 76-121 (256)
157 KOG0540 3-Methylcrotonyl-CoA c 58.3 88 0.0019 31.6 9.7 84 104-192 363-460 (536)
158 COG0074 SucD Succinyl-CoA synt 55.5 36 0.00078 32.2 6.3 79 99-191 175-254 (293)
159 smart00245 TSPc tail specific 55.3 60 0.0013 28.1 7.5 71 106-177 38-134 (192)
160 PF03572 Peptidase_S41: Peptid 52.6 40 0.00088 27.6 5.8 67 110-177 16-112 (169)
161 PLN00125 Succinyl-CoA ligase [ 51.0 41 0.00089 31.8 6.1 65 98-167 179-245 (300)
162 KOG3877 NADH:ubiquinone oxidor 50.9 23 0.00049 33.8 4.2 61 96-157 70-140 (393)
163 COG4799 Acetyl-CoA carboxylase 48.9 45 0.00097 34.1 6.3 90 102-195 103-202 (526)
164 COG0757 AroQ 3-dehydroquinate 48.1 51 0.0011 28.0 5.5 30 132-162 70-99 (146)
165 PF13607 Succ_CoA_lig: Succiny 45.4 73 0.0016 26.5 6.1 60 98-165 30-91 (138)
166 cd07563 Peptidase_S41_IRBP Int 44.5 1.4E+02 0.003 26.7 8.3 50 128-177 96-179 (250)
167 PF03808 Glyco_tran_WecB: Glyc 44.1 1.5E+02 0.0032 25.3 8.1 63 98-166 50-112 (172)
168 TIGR02886 spore_II_AA anti-sig 38.7 54 0.0012 25.0 4.1 35 98-132 10-44 (106)
169 PTZ00187 succinyl-CoA syntheta 38.2 94 0.002 29.7 6.4 66 98-167 198-264 (317)
170 TIGR00282 metallophosphoestera 36.2 89 0.0019 29.0 5.8 64 98-162 2-66 (266)
171 cd06533 Glyco_transf_WecG_TagA 33.6 2.8E+02 0.006 23.6 8.1 73 89-167 37-111 (171)
172 COG0779 Uncharacterized protei 32.2 1.1E+02 0.0024 26.2 5.3 41 100-140 41-85 (153)
173 PHA00099 minor capsid protein 31.3 3E+02 0.0066 23.1 7.5 53 202-256 59-114 (147)
174 cd07562 Peptidase_S41_TRI Tric 30.9 2.8E+02 0.0061 25.1 8.2 80 93-177 83-185 (266)
175 PF00681 Plectin: Plectin repe 30.8 32 0.00069 22.9 1.4 19 240-258 17-35 (45)
176 PRK06091 membrane protein FdrA 30.2 1.1E+02 0.0024 31.5 5.8 69 98-168 222-292 (555)
177 PRK14640 hypothetical protein; 30.1 1.1E+02 0.0024 25.8 5.0 60 100-160 39-102 (152)
178 PLN02522 ATP citrate (pro-S)-l 28.8 1.7E+02 0.0036 30.6 6.8 65 98-167 196-262 (608)
179 PRK14633 hypothetical protein; 27.9 1.3E+02 0.0028 25.4 5.0 60 100-160 36-99 (150)
180 cd06844 STAS Sulphate Transpor 27.7 83 0.0018 23.8 3.5 37 98-134 10-46 (100)
181 PRK14635 hypothetical protein; 27.6 1.3E+02 0.0028 25.8 5.0 35 106-140 50-85 (162)
182 PF06972 DUF1296: Protein of u 27.4 1E+02 0.0022 22.4 3.5 33 220-253 8-41 (60)
183 TIGR00377 ant_ant_sig anti-ant 27.4 2.7E+02 0.0058 20.9 7.1 35 98-132 14-48 (108)
184 PF01740 STAS: STAS domain; I 27.3 2.9E+02 0.0062 21.2 6.9 79 98-176 11-99 (117)
185 PRK14637 hypothetical protein; 26.8 1.3E+02 0.0028 25.6 4.8 61 100-161 41-104 (151)
186 KOG3093 5-formyltetrahydrofola 26.7 95 0.0021 27.7 4.0 45 111-155 31-75 (200)
187 cd07382 MPP_DR1281 Deinococcus 26.5 1.6E+02 0.0035 27.0 5.8 63 98-163 1-66 (255)
188 TIGR00661 MJ1255 conserved hyp 26.4 1.1E+02 0.0023 28.4 4.6 35 130-165 2-37 (321)
189 TIGR02763 chlamy_scaf chlamydi 25.6 3.2E+02 0.007 22.1 6.4 56 202-260 29-88 (114)
190 PRK14646 hypothetical protein; 25.2 1.5E+02 0.0032 25.3 4.9 60 100-160 40-105 (155)
191 PRK14639 hypothetical protein; 25.1 1.6E+02 0.0035 24.6 5.0 60 100-160 30-93 (140)
192 PF14566 PTPlike_phytase: Inos 24.5 2E+02 0.0044 23.9 5.6 57 91-152 83-149 (149)
193 PF01381 HTH_3: Helix-turn-hel 24.2 1.2E+02 0.0027 20.0 3.5 32 221-252 12-43 (55)
194 PRK14638 hypothetical protein; 23.8 1.7E+02 0.0036 24.8 4.9 61 100-161 41-106 (150)
195 PRK14647 hypothetical protein; 23.3 1.7E+02 0.0036 24.9 4.9 59 100-160 41-104 (159)
196 smart00250 PLEC Plectin repeat 23.1 54 0.0012 20.9 1.4 19 241-259 18-36 (38)
197 PRK14632 hypothetical protein; 22.7 1.8E+02 0.0038 25.3 4.9 60 100-160 40-103 (172)
198 PRK13170 hisH imidazole glycer 22.6 72 0.0016 27.7 2.6 29 137-165 45-80 (196)
199 PRK14643 hypothetical protein; 22.5 1.9E+02 0.0041 24.9 5.0 56 104-160 52-109 (164)
200 COG1366 SpoIIAA Anti-anti-sigm 22.0 1.4E+02 0.0031 23.4 4.0 42 98-141 15-56 (117)
201 cd01455 vWA_F11C1-5a_type Von 21.7 4.5E+02 0.0098 23.3 7.4 74 89-165 75-152 (191)
202 TIGR02675 tape_meas_nterm tape 21.6 1.7E+02 0.0037 21.6 4.1 30 219-249 45-74 (75)
203 PRK14641 hypothetical protein; 20.7 2.1E+02 0.0045 25.0 5.0 59 100-159 42-108 (173)
204 TIGR03070 couple_hipB transcri 20.2 2.4E+02 0.0051 18.4 4.3 32 221-252 18-49 (58)
No 1
>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-70 Score=488.61 Aligned_cols=261 Identities=43% Similarity=0.682 Sum_probs=232.7
Q ss_pred cccceeeeccceecCCCcccCCCCCchhHHHhhhhheeeecccCCCCcccccccccCCCccceeecCCCCCCchhchhHh
Q 023631 14 LSCNLKLFSGLKIQSPSVFGTGKPNLSAEFYGRVHKSLYSGIRNDKPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNA 93 (279)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mp~~~p~v~~~~~~~~~~~~~di~~~ 93 (279)
.+|+.+.|+||.|++.+.|...+ +...++...+-.++++.. ...++....++++++|.+++..++++.++|+||||+
T Consensus 12 ~~~~~~~~~~l~P~~~~~~~~~~-~~~r~~~~~~~~s~~sg~--~~~~~~~~~~~~~~~p~~~~~~~~rG~~~~~Di~s~ 88 (275)
T KOG0840|consen 12 SSSSPKRFSGLNPASTSNFPKQR-NVRRQLKSSTPKSLRSGG--SSNSRGWSLRAPILVPRFPIESPGRGRERPYDIYSR 88 (275)
T ss_pred cccccchhcccCchhhhhccccc-cchhhhhccCcccccccC--CCCCCcccccccccCCcceeeccccCCCCcccHHHH
Confidence 36899999999999998887333 344444433333444433 355556677899999999998888888889999999
Q ss_pred hhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 023631 94 LYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 173 (279)
Q Consensus 94 L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslI 173 (279)
||++|||||+++|||++++.|++||+||+.+|+.|+|+||||||||++++|++|||+|+++++||.|+|.|+|||||++|
T Consensus 89 LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~Tic~G~Aas~aalL 168 (275)
T KOG0840|consen 89 LLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVSTICVGLAASMAALL 168 (275)
T ss_pred HHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCceeeehhhHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHc
Q 023631 174 LAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEY 253 (279)
Q Consensus 174 l~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAley 253 (279)
|++|.||+|+++||||||||||.++++|++.|+.++++|+.++++.+.++|+++||++.|+|.++++||+||+|+||+||
T Consensus 169 LaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~~d~dRd~fmsa~EA~ey 248 (275)
T KOG0840|consen 169 LAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIEKDMDRDRFMSAEEAKEY 248 (275)
T ss_pred HhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHhhhcccccCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceeecC-CCCccccCCccccCCC
Q 023631 254 GLIDRIIR-PPRIKEDMPRKDAGTG 277 (279)
Q Consensus 254 GLID~I~~-~~~~~~~~~~~~~~~~ 277 (279)
||||+|++ +.+.+.+.+....+.+
T Consensus 249 GliD~v~~~p~~~~~~~~~~~e~~~ 273 (275)
T KOG0840|consen 249 GLIDKVIDHPPETRVDDGTLVESAM 273 (275)
T ss_pred cchhhhhcCCcccccccchhhhccc
Confidence 99999998 5555555555555443
No 2
>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit
Probab=100.00 E-value=2.4e-60 Score=419.77 Aligned_cols=197 Identities=45% Similarity=0.805 Sum_probs=192.6
Q ss_pred ccCCCccceeecCCCCCCchhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHH
Q 023631 68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI 147 (279)
Q Consensus 68 mp~~~p~v~~~~~~~~~~~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaI 147 (279)
||+|+|+|++..++++.++|+|+|++||++|||||+++||++++++++++|++|+.+++.++|+||||||||+|++|++|
T Consensus 1 m~~~~p~~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpGG~v~~g~aI 80 (200)
T CHL00028 1 MPIGVPKVPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAI 80 (200)
T ss_pred CCCCCceeeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCCcchhhHHHH
Confidence 89999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccc-cCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 023631 148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGA-ARGQADDIRNEADELLRVRDYIFKELSR 226 (279)
Q Consensus 148 yd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~-~~G~a~di~~~a~el~~l~~~i~~~ya~ 226 (279)
||+|++++.||+|+|.|+|||||++|+++|++|+|+++|||++|+|||+++ ..|+++|+++++++++++++.+.++|++
T Consensus 81 yd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~ 160 (200)
T CHL00028 81 YDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYAQ 160 (200)
T ss_pred HHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 8999999999999999999999999999
Q ss_pred HhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 227 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 227 ~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
+||++.++|+++++||+||||+||++|||||+|+++..
T Consensus 161 ~Tg~~~e~i~~~~~r~~~lta~EA~eyGliD~I~~~~~ 198 (200)
T CHL00028 161 RTGKPLWVISEDMERDVFMSATEAKAYGIVDLVAVNNE 198 (200)
T ss_pred HHCcCHHHHHHHhhcCccCCHHHHHHcCCCcEEeecCc
Confidence 99999999999999999999999999999999998654
No 3
>PRK12552 ATP-dependent Clp protease-like protein; Reviewed
Probab=100.00 E-value=2.7e-60 Score=423.94 Aligned_cols=197 Identities=38% Similarity=0.595 Sum_probs=191.7
Q ss_pred ccCCCccceeecCCCCCCchhchhHhhhcCcEEEEccccChh----------HHHHHHHHHHhhcccCCCCcEEEEEeCC
Q 023631 68 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEE----------FSNQILATMLYLDSVDDSKRVYMYINGP 137 (279)
Q Consensus 68 mp~~~p~v~~~~~~~~~~~~~di~~~L~~~riIfL~g~I~~~----------~a~~ii~~Ll~L~~~d~~k~I~L~INSP 137 (279)
||+++|+||+..+++.++.|.|+|++||++|||||+++|+++ ++++++++|++|+.+++.++|+||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSp 80 (222)
T PRK12552 1 SPIMAVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINST 80 (222)
T ss_pred CCCCcccccccCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence 799999999999988889999999999999999999999999 9999999999999999999999999999
Q ss_pred CCC---------hhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHH
Q 023631 138 GGD---------VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRN 208 (279)
Q Consensus 138 GGs---------V~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~ 208 (279)
||+ |++|++|||+|++++.+|+|+|.|+|||||++|+++|++|+|+++|||++|||||+++..|++.|+++
T Consensus 81 GGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~ 160 (222)
T PRK12552 81 GTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQI 160 (222)
T ss_pred CCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHH
Confidence 988 77889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 209 EADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 209 ~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
++++++++++.+.++|+++||++.++|+++++||+||||+||++|||||+|+++..
T Consensus 161 ~a~el~~~r~~l~~iya~~TG~~~e~I~~d~~rd~wmsA~EA~eyGliD~Ii~~~~ 216 (222)
T PRK12552 161 RAKEVLHNKRTMLEILSRNTGQTVEKLSKDTDRMFYLTPQEAKEYGLIDRVLESRK 216 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHhcCCCcCCHHHHHHcCCCcEEeccCC
Confidence 99999999999999999999999999999999999999999999999999998643
No 4
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=100.00 E-value=2.9e-60 Score=416.07 Aligned_cols=182 Identities=43% Similarity=0.758 Sum_probs=177.8
Q ss_pred chhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q 023631 86 QWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGF 165 (279)
Q Consensus 86 ~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~ 165 (279)
+++|||++|+++|+|||+|+|++..++.+++||++|+++++.|+|+||||||||+|++|++|||+|+++++||+|+|.|+
T Consensus 16 ~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G~ 95 (200)
T COG0740 16 RSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMGQ 95 (200)
T ss_pred ChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEecH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|||||++|++||++|||+++|||++|||||+++.+|+++|+++++++++++++.+.++|+++||++.++|+++++||+||
T Consensus 96 AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~~i~a~~TGq~~e~i~~d~drd~~m 175 (200)
T COG0740 96 AASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEKIEKDTDRDTWM 175 (200)
T ss_pred HHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhhcccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCceeecCCCCccc
Q 023631 246 GSQEALEYGLIDRIIRPPRIKE 267 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~~~~~ 267 (279)
||+||++|||||+|++..+..+
T Consensus 176 sa~eA~~yGLiD~V~~~~~~~~ 197 (200)
T COG0740 176 SAEEAKEYGLIDKVIESREAAA 197 (200)
T ss_pred CHHHHHHcCCcceecccccccc
Confidence 9999999999999999876553
No 5
>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=5.2e-58 Score=404.78 Aligned_cols=182 Identities=41% Similarity=0.709 Sum_probs=178.0
Q ss_pred CchhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 023631 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 85 ~~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G 164 (279)
..|.|||++||++|||||+++|+++++++++++|++|+.+++.++|+||||||||+|++|++|||+|++++.||+|+|.|
T Consensus 15 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G 94 (201)
T PRK14513 15 ERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVG 94 (201)
T ss_pred ccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEe
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
+|||||++|++||++|+|+++|||++|||||+++..|++.|+++++++++++++.+.++|+++||++.++|.++++||+|
T Consensus 95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~iya~~Tg~~~~~I~~~~~rd~~ 174 (201)
T PRK14513 95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVDIYHRHTDLPHEKLLRDMERDYF 174 (201)
T ss_pred eehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHcCCceeecCCCCcc
Q 023631 245 FGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 245 lsa~EAleyGLID~I~~~~~~~ 266 (279)
|||+||++|||||+|+++++.|
T Consensus 175 msa~EA~eyGliD~I~~~~~~~ 196 (201)
T PRK14513 175 MSPEEAKAYGLIDSVIEPTRVK 196 (201)
T ss_pred cCHHHHHHcCCCcEEeccCCCC
Confidence 9999999999999999987766
No 6
>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=4.2e-57 Score=403.84 Aligned_cols=190 Identities=41% Similarity=0.676 Sum_probs=179.8
Q ss_pred CccceeecCCCCCCchhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHH
Q 023631 72 TPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM 151 (279)
Q Consensus 72 ~p~v~~~~~~~~~~~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i 151 (279)
+|++..... +.++|+|||++||++|||||+|+||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|
T Consensus 31 ~p~~~~~~~--~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m 108 (221)
T PRK14514 31 NPYILEERQ--LNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTM 108 (221)
T ss_pred cceeeeeCC--CCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHH
Confidence 355554432 224579999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
++++.||+|+|.|+|||||++|+++|++|+|+++|||+||||||+++..|+++|+++++++++++++.+.++|+++||++
T Consensus 109 ~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG~~ 188 (221)
T PRK14514 109 QFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELYTIIADHSGTP 188 (221)
T ss_pred HhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCC
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPP 263 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~ 263 (279)
.++|+++++||+||||+||++|||||+|++.+
T Consensus 189 ~e~I~~~~~rd~wmtA~EA~eyGliD~Vi~~~ 220 (221)
T PRK14514 189 FDKVWADSDRDYWMTAQEAKEYGMIDEVLIKK 220 (221)
T ss_pred HHHHHHHhhcCccCCHHHHHHcCCccEEeecC
Confidence 99999999999999999999999999999864
No 7
>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=1.1e-55 Score=388.99 Aligned_cols=182 Identities=45% Similarity=0.762 Sum_probs=177.0
Q ss_pred CchhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 023631 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 85 ~~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G 164 (279)
+.|.|+|++||++|||||+++||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|++++.||+|+|.|
T Consensus 13 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G 92 (196)
T PRK12551 13 ERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVG 92 (196)
T ss_pred ccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
+|||||++|+++|++|+|+++|||++|||||+++..|+++|+++++++++++++.+.++|+++||++.++|+++++||+|
T Consensus 93 ~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~~~i~~~~~rd~~ 172 (196)
T PRK12551 93 LAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPLERIQEDTDRDFF 172 (196)
T ss_pred EehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhcCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHcCCceeecCCCCcc
Q 023631 245 FGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 245 lsa~EAleyGLID~I~~~~~~~ 266 (279)
|||+||++|||||+|+++.+.+
T Consensus 173 msa~EA~eyGliD~I~~~~~~~ 194 (196)
T PRK12551 173 MSPSEAVEYGLIDLVIDKRPVK 194 (196)
T ss_pred CCHHHHHHcCCCcEEeccCCCC
Confidence 9999999999999999976543
No 8
>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=4.5e-53 Score=373.48 Aligned_cols=197 Identities=42% Similarity=0.698 Sum_probs=189.6
Q ss_pred ccCCCccceeec-CCCCCCchhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHH
Q 023631 68 MPIGTPKVLYRT-PGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA 146 (279)
Q Consensus 68 mp~~~p~v~~~~-~~~~~~~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~agla 146 (279)
||+|+|.||+.. ++++...|+||+++||++|+|||+|+|++++++.++++|++|+.+++.++|+||||||||+|++|++
T Consensus 1 ~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpGG~v~~g~~ 80 (200)
T PRK00277 1 MPIMMNLVPMVIEQTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLA 80 (200)
T ss_pred CCCCCCCCceeeccCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCcHHHHHH
Confidence 899999999866 4566678999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 023631 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 226 (279)
Q Consensus 147 Iyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~ 226 (279)
|||+|++++.||+|+|.|.|+|+|++|+++|++++|+++|||++|+|+|+++..|++.|++.++++++++++.+.++|++
T Consensus 81 I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~ 160 (200)
T PRK00277 81 IYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAE 160 (200)
T ss_pred HHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 227 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 227 ~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
+||++.+++++++++|+||||+||++|||||+|++..+
T Consensus 161 ~tg~~~~~i~~~~~~~~~lsa~EA~e~GliD~Ii~~~~ 198 (200)
T PRK00277 161 HTGQPLEKIEKDTDRDNFMSAEEAKEYGLIDEVLTKRK 198 (200)
T ss_pred HHCcCHHHHHHHhhCCccccHHHHHHcCCccEEeecCC
Confidence 99999999999999999999999999999999998743
No 9
>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP. This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.
Probab=100.00 E-value=4.6e-51 Score=358.40 Aligned_cols=177 Identities=42% Similarity=0.740 Sum_probs=173.0
Q ss_pred CchhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 023631 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 85 ~~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G 164 (279)
+.|+|+|++||++|+|||+|+|+++++++++++|++|+.+++.++|+||||||||+|++|++|||+|++++.||+|+|.|
T Consensus 14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G 93 (191)
T TIGR00493 14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG 93 (191)
T ss_pred cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence 45799999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
+|+|||++|+++|++++|++.|||++|+|||+++..|++.|+++++++++++++.+.++|+++||++.+++++++++|+|
T Consensus 94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~~~i~~~~~~~~~ 173 (191)
T TIGR00493 94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSLEQIEKDTERDFF 173 (191)
T ss_pred eeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHhhCCcc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred eCHHHHHHcCCceeecC
Q 023631 245 FGSQEALEYGLIDRIIR 261 (279)
Q Consensus 245 lsa~EAleyGLID~I~~ 261 (279)
|||+||++|||||+|++
T Consensus 174 lta~EA~~~GliD~ii~ 190 (191)
T TIGR00493 174 MSAEEAKEYGLIDSVLT 190 (191)
T ss_pred CcHHHHHHcCCccEEec
Confidence 99999999999999975
No 10
>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional
Probab=100.00 E-value=3.8e-49 Score=347.85 Aligned_cols=176 Identities=27% Similarity=0.476 Sum_probs=171.4
Q ss_pred hchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccc
Q 023631 88 VDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 167 (279)
Q Consensus 88 ~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AA 167 (279)
.+++++|+++|+|||.|+|++++++.++++|++|+.+++.++|+||||||||+|++|++|||+|++++.||+|+|.|+||
T Consensus 14 ~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~Aa 93 (197)
T PRK14512 14 DKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVA 93 (197)
T ss_pred chHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeH
Confidence 47899999999999999999999999999999999878889999999999999999999999999999999999999999
Q ss_pred hHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCH
Q 023631 168 HLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGS 247 (279)
Q Consensus 168 S~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa 247 (279)
|||++|+++|++|+|+++|||++|+|||+++..|+++|++.++++++++++.+.++|+++||++.+++++++++|+||||
T Consensus 94 SaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~i~~~~~~d~~lta 173 (197)
T PRK14512 94 SAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDKVEKDTDRDFWLDS 173 (197)
T ss_pred hHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhhcCcccCH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeecCCC
Q 023631 248 QEALEYGLIDRIIRPP 263 (279)
Q Consensus 248 ~EAleyGLID~I~~~~ 263 (279)
+||++|||||+|+++.
T Consensus 174 ~EA~~yGliD~I~~~~ 189 (197)
T PRK14512 174 SSAVKYGLVFEVVETR 189 (197)
T ss_pred HHHHHcCCccEeecCc
Confidence 9999999999999864
No 11
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=100.00 E-value=1.2e-48 Score=338.64 Aligned_cols=178 Identities=39% Similarity=0.694 Sum_probs=169.8
Q ss_pred chhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccc
Q 023631 86 QWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGF 165 (279)
Q Consensus 86 ~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~ 165 (279)
+|+|||++|+++|+|||.|+||+++++.++++|++|+.+++.++|+|+||||||+|.+|++|||+|+.++.||+|+|.|.
T Consensus 5 ~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~ 84 (182)
T PF00574_consen 5 EWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLGL 84 (182)
T ss_dssp EEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEEE
T ss_pred EEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeCc
Confidence 69999999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|+|+|++|+++|++++|++.|+|+||+|+|..+..|+..++.+++++++++++.+.++|+++||++.+++++++++|+||
T Consensus 85 aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~l 164 (182)
T PF00574_consen 85 AASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEIEELMDRDTWL 164 (182)
T ss_dssp EETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHCSSTEEE
T ss_pred cccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHcCCceeecCCC
Q 023631 246 GSQEALEYGLIDRIIRPP 263 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~ 263 (279)
+|+||++|||||+|++++
T Consensus 165 ~a~EA~~~GiiD~I~~~~ 182 (182)
T PF00574_consen 165 SAEEALEYGIIDEIIESR 182 (182)
T ss_dssp EHHHHHHHTSSSEEESS-
T ss_pred cHHHHHHcCCCCEeccCC
Confidence 999999999999999863
No 12
>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed
Probab=100.00 E-value=8.9e-48 Score=341.44 Aligned_cols=180 Identities=42% Similarity=0.698 Sum_probs=174.1
Q ss_pred CchhchhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 023631 85 WQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 85 ~~~~di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G 164 (279)
+.|.|||++|+++|+|||+|+|++++++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.||+|+|.|
T Consensus 23 ~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G 102 (207)
T PRK12553 23 VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTG 102 (207)
T ss_pred CccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 45789999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCc--cccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCC
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA--GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI 242 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~--~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd 242 (279)
.|+|||++|+++|++|+|++.|||+||+|||+ ++..|++.|++.++++++++++.+.++|+++||++.++++++++++
T Consensus 103 ~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~~~~~ya~~tg~~~e~i~~~~~~~ 182 (207)
T PRK12553 103 QAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERLERILAEHTGQSVEKIRKDTDRD 182 (207)
T ss_pred ehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhcC
Confidence 99999999999999999999999999999998 5689999999999999999999999999999999999999999999
Q ss_pred ceeCHHHHHHcCCceeecCCCC
Q 023631 243 KRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 243 ~~lsa~EAleyGLID~I~~~~~ 264 (279)
+||||+||++|||||+|+++.+
T Consensus 183 ~~lta~EA~e~GliD~I~~~~~ 204 (207)
T PRK12553 183 KWLTAEEAKDYGLVDQIITSYR 204 (207)
T ss_pred ccccHHHHHHcCCccEEcCchh
Confidence 9999999999999999998754
No 13
>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ
Probab=100.00 E-value=6.9e-46 Score=319.77 Aligned_cols=171 Identities=51% Similarity=0.861 Sum_probs=167.4
Q ss_pred chhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccch
Q 023631 89 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYH 168 (279)
Q Consensus 89 di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS 168 (279)
||+++|+++|+|||+|+|+++.+++++++|++++.+++.++|+|+||||||++++|++|||.|+.++.||+|++.|+|+|
T Consensus 1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS 80 (171)
T cd07017 1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS 80 (171)
T ss_pred ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence 78999999999999999999999999999999999888899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHH
Q 023631 169 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQ 248 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~ 248 (279)
+|++|+++|++|+|++.|||++|+|+|+.+..|+++|+..+++++.++++.+.++|+++||++.+++.+++++++||||+
T Consensus 81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~~~~~lta~ 160 (171)
T cd07017 81 MGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTDRDRYMSAE 160 (171)
T ss_pred HHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhhCCccccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceee
Q 023631 249 EALEYGLIDRI 259 (279)
Q Consensus 249 EAleyGLID~I 259 (279)
||++|||||+|
T Consensus 161 EA~e~GiiD~V 171 (171)
T cd07017 161 EAKEYGLIDKI 171 (171)
T ss_pred HHHHcCCCccC
Confidence 99999999986
No 14
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=100.00 E-value=6.2e-45 Score=311.67 Aligned_cols=162 Identities=36% Similarity=0.599 Sum_probs=159.2
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHcCC
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGG 177 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG 177 (279)
|+|||.|+|++.+++.++++|++|+.+++.++|+|+||||||+++++++|||+|+.++.||+|+|.|+|+|+|++|+++|
T Consensus 1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~ 80 (162)
T cd07013 1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG 80 (162)
T ss_pred CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence 79999999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred CCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCce
Q 023631 178 EKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLID 257 (279)
Q Consensus 178 ~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID 257 (279)
++|+|+++|++++|+|+|+++..|++.|++.++++++++++.+.++|+++||++.++|++++++++||||+||++|||||
T Consensus 81 ~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~eA~~~GliD 160 (162)
T cd07013 81 AKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERDTWLSAREAVEYGFAD 160 (162)
T ss_pred CCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCCccccHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ee
Q 023631 258 RI 259 (279)
Q Consensus 258 ~I 259 (279)
+|
T Consensus 161 ~i 162 (162)
T cd07013 161 TI 162 (162)
T ss_pred cC
Confidence 86
No 15
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=100.00 E-value=3.6e-34 Score=243.26 Aligned_cols=156 Identities=29% Similarity=0.415 Sum_probs=149.6
Q ss_pred EEEEccccCh---hHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHc
Q 023631 99 VIFIGQNIDE---EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLA 175 (279)
Q Consensus 99 iIfL~g~I~~---~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslIl~ 175 (279)
.|||+|+|++ ..++.+.+.|.+++.+ ++|+|+||||||++.++++|++.|+.+++||+|++.|.|+|+|++|++
T Consensus 2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~ 78 (160)
T cd07016 2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM 78 (160)
T ss_pred EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence 5899999999 7999999999887653 899999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCC
Q 023631 176 GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGL 255 (279)
Q Consensus 176 aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGL 255 (279)
+|++ |++.|+++||+|+|.++..|+..++++..++++++++.+.+.|++++|++.+++++++.++.||+++||+++||
T Consensus 79 a~d~--~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~l~a~eA~~~Gl 156 (160)
T cd07016 79 AGDE--VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAETWLTAQEAVELGF 156 (160)
T ss_pred cCCe--EEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCCeECcHHHHHHcCC
Confidence 9998 99999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ceee
Q 023631 256 IDRI 259 (279)
Q Consensus 256 ID~I 259 (279)
||+|
T Consensus 157 iD~v 160 (160)
T cd07016 157 ADEI 160 (160)
T ss_pred CCcC
Confidence 9986
No 16
>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle
Probab=100.00 E-value=7.3e-33 Score=239.44 Aligned_cols=157 Identities=18% Similarity=0.213 Sum_probs=142.0
Q ss_pred EEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHHHc
Q 023631 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA 175 (279)
Q Consensus 99 iIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~---G~AAS~aslIl~ 175 (279)
+|.|.|.|++.....+.+.|...+. ++.+.|+|+||||||+++++++||++|+..++||+|+|. |+|+|+|++|++
T Consensus 3 vi~i~G~I~~~~~~~l~~~l~~A~~-~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~ 81 (172)
T cd07015 3 VAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL 81 (172)
T ss_pred EEEEeeEECHhHHHHHHHHHHHHhc-CCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence 6889999999998888888876654 568999999999999999999999999999999999999 999999999999
Q ss_pred CCCCCcEEEccCceEEEecCccccCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHH
Q 023631 176 GGEKGNRSAMPLSRIALDSPAGAARGQ-----ADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEA 250 (279)
Q Consensus 176 aG~kg~R~a~P~S~imiHqp~~~~~G~-----a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EA 250 (279)
+|++ |+|.|++++|.|+|..+ .|+ ..|.+.+..++.++++ ++++||++.+.+++++++++|||++||
T Consensus 82 a~~~--i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~-----~A~~~Gr~~~~a~~~v~~~~~lta~EA 153 (172)
T cd07015 82 GSHL--IAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS-----LAQESGRNATIAEEFITKDLSLTPEEA 153 (172)
T ss_pred hcCc--eEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH-----HHHHHCcCHHHHHHHHHhhcCcCHHHH
Confidence 9998 99999999999999764 355 5567777777777766 899999999999999999999999999
Q ss_pred HHcCCceeecCCCC
Q 023631 251 LEYGLIDRIIRPPR 264 (279)
Q Consensus 251 leyGLID~I~~~~~ 264 (279)
++||+||.|..+.+
T Consensus 154 ~~~G~iD~ia~~~~ 167 (172)
T cd07015 154 LKYGVIEVVARDIN 167 (172)
T ss_pred HHcCCceeeeCCHH
Confidence 99999999998743
No 17
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=99.97 E-value=4.5e-31 Score=223.63 Aligned_cols=159 Identities=26% Similarity=0.411 Sum_probs=150.1
Q ss_pred EEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHcCCC
Q 023631 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178 (279)
Q Consensus 99 iIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~ 178 (279)
+|+|+|+|++.+.+.+++.|..++.+++.+.|+|++|||||++.++..|++.|+..++||++++.|.|+|+|++|+++|+
T Consensus 1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d 80 (161)
T cd00394 1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN 80 (161)
T ss_pred CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence 58999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEccCceEEEecCccccCCCh--hhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCc
Q 023631 179 KGNRSAMPLSRIALDSPAGAARGQA--DDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLI 256 (279)
Q Consensus 179 kg~R~a~P~S~imiHqp~~~~~G~a--~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLI 256 (279)
+ |++.|++++++|+|..+..+.. .+.+...+.++.+++.+.+.++++||++.+++++.+.++.||+++||+++|||
T Consensus 81 ~--~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~~~~~~a~eA~~~GLv 158 (161)
T cd00394 81 K--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEKDLVLTAQEALEYGLV 158 (161)
T ss_pred E--EEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcCCcEEcHHHHHHcCCc
Confidence 7 9999999999999987655544 67777788999999999999999999999999999999999999999999999
Q ss_pred eee
Q 023631 257 DRI 259 (279)
Q Consensus 257 D~I 259 (279)
|+|
T Consensus 159 D~i 161 (161)
T cd00394 159 DAL 161 (161)
T ss_pred CcC
Confidence 986
No 18
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=99.96 E-value=2.6e-28 Score=213.03 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=143.0
Q ss_pred EEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHHHc
Q 023631 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFLLA 175 (279)
Q Consensus 99 iIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~---G~AAS~aslIl~ 175 (279)
+|.|.|+|++..++.+.++|..++.+ +.+.|+|+||||||++.++..||+.|+.+++||++++. |.|+|+|++|++
T Consensus 3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial 81 (187)
T cd07020 3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL 81 (187)
T ss_pred EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence 68899999999999999999988754 48999999999999999999999999999999999998 999999999999
Q ss_pred CCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCC
Q 023631 176 GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGL 255 (279)
Q Consensus 176 aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGL 255 (279)
+|++ |++.|+++|++|+|..+..+...+...+.+.+..++. +...|++++|++.+.+++++.++.||+++||+++||
T Consensus 82 a~D~--iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~G~~~~~a~~~l~~g~~~~a~eA~~~Gl 158 (187)
T cd07020 82 AAHI--AAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVA-YIRSLAELRGRNAEWAEKAVRESLSLTAEEALKLGV 158 (187)
T ss_pred hCCc--eeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHcCCeecHHHHHHcCC
Confidence 9998 9999999999999985433333344555666666654 588899999999999999999999999999999999
Q ss_pred ceeecCCC
Q 023631 256 IDRIIRPP 263 (279)
Q Consensus 256 ID~I~~~~ 263 (279)
||+|++..
T Consensus 159 vd~v~~~~ 166 (187)
T cd07020 159 IDLIAADL 166 (187)
T ss_pred cccccCCH
Confidence 99999875
No 19
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=99.94 E-value=1e-25 Score=195.97 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=136.0
Q ss_pred EEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHcCCC
Q 023631 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGE 178 (279)
Q Consensus 99 iIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~ 178 (279)
+|.|.|+|++..+..+.+.|.....+ +.+.|+|+||||||.++++..|++.|+.+++||++++.|.|+|+|++|+++|+
T Consensus 3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 68899999999999888888776654 48999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCC-------------cee
Q 023631 179 KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI-------------KRF 245 (279)
Q Consensus 179 kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd-------------~~l 245 (279)
+ ++|.|+++|+.|.|.....++..+ .+....+ ..+.+.|++++|++.+.++++++++ .||
T Consensus 82 ~--i~m~p~a~iG~~~~v~~~~~~~~~----~K~~~~~-~~~~~~~A~~~gr~~~~a~~mv~~~~~v~~~~~~~~~~l~l 154 (178)
T cd07021 82 E--IYMAPGATIGAAEPIPGDGNGAAD----EKVQSYW-RAKMRAAAEKKGRDPDIAEAMVDKDIEVPGVGIKGGELLTL 154 (178)
T ss_pred e--EEECCCCeEecCeeEcCCCccchh----HHHHHHH-HHHHHHHHHHhCCCHHHHHHHhhhhcccccccccccceeee
Confidence 8 999999999999998655443322 1222333 3456669999999999999999998 599
Q ss_pred CHHHHHHcCCceeecCCC
Q 023631 246 GSQEALEYGLIDRIIRPP 263 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~ 263 (279)
|++||+++|++|.|..+.
T Consensus 155 ta~eA~~~g~~d~ia~~~ 172 (178)
T cd07021 155 TADEALKVGYAEGIAGSL 172 (178)
T ss_pred CHHHHHHhCCeEEEECCH
Confidence 999999999999998764
No 20
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=99.86 E-value=5.1e-21 Score=169.57 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=137.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcC--CCeEEEEccccchHHHHHHc
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGFAYHLAGFLLA 175 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~--~pV~Tv~~G~AAS~aslIl~ 175 (279)
-+|.|.|+|+ .....+...|..+..++..+.|.|++|||||++..+..|++.|+.++ +||++++.|.|+|+|++|++
T Consensus 3 ~vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~ 81 (207)
T TIGR00706 3 AILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAM 81 (207)
T ss_pred EEEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHh
Confidence 4789999998 45678888888888777889999999999999999999999999998 99999999999999999999
Q ss_pred CCCCCcEEEccCceEEE------ecCc------cc------cCCC------------hhhHHHHHHHHHHHHHHHHHHHH
Q 023631 176 GGEKGNRSAMPLSRIAL------DSPA------GA------ARGQ------------ADDIRNEADELLRVRDYIFKELS 225 (279)
Q Consensus 176 aG~kg~R~a~P~S~imi------Hqp~------~~------~~G~------------a~di~~~a~el~~l~~~i~~~ya 225 (279)
+|++ |++.|++.++. |... .| ..|+ .++.+...+.++.+.+.|.+.++
T Consensus 82 aaD~--i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~~~va 159 (207)
T TIGR00706 82 AADE--IVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYEQFVQVVA 159 (207)
T ss_pred cCCE--EEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 99999997643 2211 00 1111 12333344567888899999999
Q ss_pred HHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcccc
Q 023631 226 RKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 268 (279)
Q Consensus 226 ~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~~~ 268 (279)
+.+|++.+++++.++... |+++||+++||||+|+..++..+.
T Consensus 160 ~~R~~~~~~~~~~~~~~~-~~~~~A~~~gLvD~i~~~~~~~~~ 201 (207)
T TIGR00706 160 KGRNLPVEDVKKFADGRV-FTGRQALKLRLVDKLGTEDDALKW 201 (207)
T ss_pred hcCCCCHHHHHHHhcCCc-ccHHHHHHcCCCcccCCHHHHHHH
Confidence 999999999999888765 599999999999999987776543
No 21
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=99.86 E-value=1.1e-20 Score=167.01 Aligned_cols=165 Identities=21% Similarity=0.219 Sum_probs=137.3
Q ss_pred cEEEEccccC---hhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEccccchHHH
Q 023631 98 RVIFIGQNID---EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAG 171 (279)
Q Consensus 98 riIfL~g~I~---~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~---~~pV~Tv~~G~AAS~as 171 (279)
-+|+|.|+|+ +.+...+.++|..++.+++.+.|.|.+|||||++..+..|++.++.. ++||++++.|.|+|+|+
T Consensus 3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~ 82 (208)
T cd07023 3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY 82 (208)
T ss_pred EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence 4789999999 78899999999999888889999999999999999999999988665 57999999999999999
Q ss_pred HHHcCCCCCcEEEccCceEEE------ec------------CccccCC------------ChhhHHHHHHHHHHHHHHHH
Q 023631 172 FLLAGGEKGNRSAMPLSRIAL------DS------------PAGAARG------------QADDIRNEADELLRVRDYIF 221 (279)
Q Consensus 172 lIl~aG~kg~R~a~P~S~imi------Hq------------p~~~~~G------------~a~di~~~a~el~~l~~~i~ 221 (279)
+|+++|++ |++.|++.+.. |. +.....| +.++.+.....++.+.+.|.
T Consensus 83 ~lA~aaD~--i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~~f~ 160 (208)
T cd07023 83 YIAAAADK--IVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVDDIYDQFV 160 (208)
T ss_pred HHHhhCCE--EEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 99999998732 21 1000111 12244445567888899999
Q ss_pred HHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 222 KELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 222 ~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
+.+++.+|++.+++.+..+.+.| ++++|+++||||+|+..++.
T Consensus 161 ~~Va~~R~~~~~~~~~~~~~~~~-~a~~A~~~gLiD~i~~~~~~ 203 (208)
T cd07023 161 DVVAEGRGMSGERLDKLADGRVW-TGRQALELGLVDELGGLDDA 203 (208)
T ss_pred HHHHhcCCCCHHHHHHhcCCcEE-EHHHHHHcCCCcccCCHHHH
Confidence 99999999999999998886665 89999999999999876554
No 22
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=99.84 E-value=3.9e-20 Score=159.78 Aligned_cols=147 Identities=15% Similarity=0.094 Sum_probs=127.5
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHh---cCCCeEEEEccccchHHHHHHcCCCCCcEEEcc
Q 023631 110 FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS---LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP 186 (279)
Q Consensus 110 ~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~---~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P 186 (279)
....+.+.+..++.++..+.|+|.+|||||++.....+++.++. +++||++++.|.|+|+|++|+++|+. +++.|
T Consensus 23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D~--i~a~~ 100 (177)
T cd07014 23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPANY--IVANP 100 (177)
T ss_pred CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCCE--EEECC
Confidence 35688888888888888899999999999999888888776644 56899999999999999999999998 99999
Q ss_pred CceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 187 LSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 187 ~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
+++|++|.+..+ .......+..+.+.+.+.+++.+|++.+++.+++....+|+|+||+++||||+|+..++.
T Consensus 101 ~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~g~~~~a~~A~~~GLVD~v~~~~e~ 172 (177)
T cd07014 101 STLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQGGVWTGQDAKANGLVDSLGSFDDA 172 (177)
T ss_pred CCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcCcCeEeHHHHHHcCCcccCCCHHHH
Confidence 999999977653 122335678899999999999999999999999988899999999999999999986543
No 23
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.84 E-value=2.1e-20 Score=175.93 Aligned_cols=167 Identities=21% Similarity=0.204 Sum_probs=132.5
Q ss_pred cEEEEccccChhH-------HHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCC--CeEEEEccccch
Q 023631 98 RVIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKS--PVGTHCVGFAYH 168 (279)
Q Consensus 98 riIfL~g~I~~~~-------a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~--pV~Tv~~G~AAS 168 (279)
-+|.+.|.|.... .+.+.+.|..+..+++.++|.|.||||||+|.++..||+.|+.++. ||++++.++|||
T Consensus 62 avi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AAS 141 (317)
T COG0616 62 AVIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAAS 141 (317)
T ss_pred EEEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecc
Confidence 4577888887543 5566666777777788999999999999999999999999999985 799999999999
Q ss_pred HHHHHHcCCCCCcEEEccCceEE------EecCcc------c------cCC-----------C-hhhHHHHHHHHHHHHH
Q 023631 169 LAGFLLAGGEKGNRSAMPLSRIA------LDSPAG------A------ARG-----------Q-ADDIRNEADELLRVRD 218 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~P~S~im------iHqp~~------~------~~G-----------~-a~di~~~a~el~~l~~ 218 (279)
+||+|++++++ ++|.|+|.++ .|.... + ..| . .++.+...++++...+
T Consensus 142 GGY~IA~aAd~--I~a~p~si~GSIGVi~~~~~~~~l~~k~Gv~~~~~~ag~~k~~~~~~~~~t~e~~~~~q~~~~e~y~ 219 (317)
T COG0616 142 GGYYIALAADK--IVADPSSITGSIGVISGAPNFEELLEKLGVEKEVITAGEYKDILSPFRPLTEEEREILQKEIDETYD 219 (317)
T ss_pred hhhhhhccCCE--EEecCCceeeeceeEEecCCHHHHHHhcCCceeeeeccccccccCcccCCCHHHHHHHHHHHHHHHH
Confidence 99999999998 9999999653 221110 0 112 1 2333344467788889
Q ss_pred HHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCccc
Q 023631 219 YIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 267 (279)
Q Consensus 219 ~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~~ 267 (279)
.|.+.+++.++.+.+++.+..++..| ++++|++.||||++++.++...
T Consensus 220 ~F~~~V~~~R~~~~~~~~~~a~g~v~-~g~~A~~~gLVDelg~~~~av~ 267 (317)
T COG0616 220 EFVDKVAEGRGLSDEAVDKLATGRVW-TGQQALELGLVDELGGLDDAVK 267 (317)
T ss_pred HHHHHHHhcCCCChhHHHHHhcccee-cHHHhhhcCCchhcCCHHHHHH
Confidence 99999999999999997777765555 8999999999999998766443
No 24
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.84 E-value=6.5e-20 Score=184.93 Aligned_cols=165 Identities=16% Similarity=0.114 Sum_probs=136.0
Q ss_pred EEEEccccChh-------HHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEccccch
Q 023631 99 VIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYH 168 (279)
Q Consensus 99 iIfL~g~I~~~-------~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~---~~pV~Tv~~G~AAS 168 (279)
+|++.|+|.+. ..+.+.+.|..+..++..+.|+|+||||||++.++..|+++|+.. ++||++++.|+|+|
T Consensus 312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS 391 (584)
T TIGR00705 312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS 391 (584)
T ss_pred EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence 89999999853 246677788777777778999999999999999999999999754 48999999999999
Q ss_pred HHHHHHcCCCCCcEEEccCceE------EEecCc------------cccC-----------CChhhHHHHHHHHHHHHHH
Q 023631 169 LAGFLLAGGEKGNRSAMPLSRI------ALDSPA------------GAAR-----------GQADDIRNEADELLRVRDY 219 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~P~S~i------miHqp~------------~~~~-----------G~a~di~~~a~el~~l~~~ 219 (279)
+|++|+++|++ +++.|++.+ +.+... .... .+.++.+...+.+++.++.
T Consensus 392 ggY~iA~aaD~--I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~~l~~~y~~ 469 (584)
T TIGR00705 392 GGYWIASAADY--IVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQLSVEAGYRR 469 (584)
T ss_pred HHHHHHHhCCE--EEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998 999999976 433210 0001 1344556667788999999
Q ss_pred HHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 220 IFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 220 i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
|.+.+++.+|++.++++++++...| +++||+++||||+|+..+++.
T Consensus 470 F~~~Va~~R~l~~e~v~~ia~Grv~-tg~eA~~~GLVD~ig~~~~Ai 515 (584)
T TIGR00705 470 FLSVVSAGRNLTPTQVDKVAQGRVW-TGEDAVSNGLVDALGGLDEAV 515 (584)
T ss_pred HHHHHHhhCCCCHHHHHHHHhCCCc-CHHHHHHcCCcccCCCHHHHH
Confidence 9999999999999999999987666 999999999999998765543
No 25
>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.
Probab=99.83 E-value=1.1e-19 Score=161.75 Aligned_cols=154 Identities=16% Similarity=0.215 Sum_probs=127.4
Q ss_pred hHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcC--CCeEEEEccccchHHHHHHcCCCCCcEEEcc
Q 023631 109 EFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP 186 (279)
Q Consensus 109 ~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~--~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P 186 (279)
.....+++.|..++.++..+.|+|.+|||||++.....|++.|+.++ +||++++.|.|+|+|++|+++|++ +++.|
T Consensus 25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD~--i~a~~ 102 (214)
T cd07022 25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAADR--IVVTP 102 (214)
T ss_pred ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCCE--EEEcC
Confidence 45788999999988888899999999999999999999999999998 999999999999999999999998 99999
Q ss_pred CceEEE------ecCcc------c------cCC------------ChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 023631 187 LSRIAL------DSPAG------A------ARG------------QADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 236 (279)
Q Consensus 187 ~S~imi------Hqp~~------~------~~G------------~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~ 236 (279)
++++.. |.... | ..| +.++.+...+.++.+.+.|.+.+++.+|++.++++
T Consensus 103 ~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~R~~~~~~~~ 182 (214)
T cd07022 103 TAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARNRGLSAAAVR 182 (214)
T ss_pred CCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 998642 22110 0 112 12233444566788899999999999999999999
Q ss_pred hHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 237 KDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 237 ~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
+.+ ...|+++||+++||||+|+..++..
T Consensus 183 ~~~--~~~~~~~~Al~~gLvD~i~~~~~~~ 210 (214)
T cd07022 183 ATE--GGVFRGQEAVAAGLADAVGTLDDAL 210 (214)
T ss_pred Hhh--cCeeeHHHHHHcCCCcccCCHHHHH
Confidence 888 5557999999999999998876544
No 26
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=99.80 E-value=1.8e-18 Score=153.77 Aligned_cols=165 Identities=16% Similarity=0.076 Sum_probs=131.5
Q ss_pred EEEEccccChhH-------HHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHH---hcCCCeEEEEccccch
Q 023631 99 VIFIGQNIDEEF-------SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQ---SLKSPVGTHCVGFAYH 168 (279)
Q Consensus 99 iIfL~g~I~~~~-------a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~---~~~~pV~Tv~~G~AAS 168 (279)
+|.+.|+|.+.. ...+...|..+..++..+.|+|.+|||||++.....+++.|+ ..++||++++.|.|+|
T Consensus 4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s 83 (211)
T cd07019 4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS 83 (211)
T ss_pred EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence 577777777642 367888888888888889999999999999999988888654 4678999999999999
Q ss_pred HHHHHHcCCCCCcEEEccCceEEEecCc------------cc------cC-C----------ChhhHHHHHHHHHHHHHH
Q 023631 169 LAGFLLAGGEKGNRSAMPLSRIALDSPA------------GA------AR-G----------QADDIRNEADELLRVRDY 219 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~P~S~imiHqp~------------~~------~~-G----------~a~di~~~a~el~~l~~~ 219 (279)
+|++|+++|++ +++.|++++...-.. .+ .. | ++++-+.....++.+.+.
T Consensus 84 ~gy~la~~aD~--i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~ 161 (211)
T cd07019 84 GGYWISTPANY--IVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKR 161 (211)
T ss_pred HHHHHHHhCCE--EEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999998 999999987432211 00 01 1 112223334568889999
Q ss_pred HHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 220 IFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 220 i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
|.+.+++.++++++.+++..+ +.+|+++||+++||||+|+..+++-
T Consensus 162 f~~~Va~~R~~~~~~l~~~~~-~~~~~~~~A~~~GLvD~i~~~~~~~ 207 (211)
T cd07019 162 FITLVADARHSTPEQIDKIAQ-GHVWTGQDAKANGLVDSLGDFDDAV 207 (211)
T ss_pred HHHHHHhhCCCCHHHHHHhcC-CcEEeHHHHHHcCCcccCCCHHHHH
Confidence 999999999999999998775 5678999999999999999876544
No 27
>PRK10949 protease 4; Provisional
Probab=99.79 E-value=1.5e-18 Score=175.86 Aligned_cols=169 Identities=16% Similarity=0.107 Sum_probs=135.4
Q ss_pred cEEEEccccChh-------HHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEccccc
Q 023631 98 RVIFIGQNIDEE-------FSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAY 167 (279)
Q Consensus 98 riIfL~g~I~~~-------~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~---~~pV~Tv~~G~AA 167 (279)
-+|++.|.|.+. ..+.++.+|..+..++..|.|+|.||||||++.++..|++.|+.. ++||++++.++||
T Consensus 329 avi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aA 408 (618)
T PRK10949 329 AVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAA 408 (618)
T ss_pred EEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCc
Confidence 469999999763 256788888888888899999999999999999999999999654 4899999999999
Q ss_pred hHHHHHHcCCCCCcEEEccCceEE------EecCc------cc------cCC-----------ChhhHHHHHHHHHHHHH
Q 023631 168 HLAGFLLAGGEKGNRSAMPLSRIA------LDSPA------GA------ARG-----------QADDIRNEADELLRVRD 218 (279)
Q Consensus 168 S~aslIl~aG~kg~R~a~P~S~im------iHqp~------~~------~~G-----------~a~di~~~a~el~~l~~ 218 (279)
|+||+|++++++ +++.|++.++ .|.-. .| ..| +.++.+.....++...+
T Consensus 409 SggY~iA~aad~--I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q~~ld~~y~ 486 (618)
T PRK10949 409 SGGYWISTPANY--IVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQLSIENGYK 486 (618)
T ss_pred cHHHHHHHhcCE--EEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999999998 9999987532 22210 00 111 12233344566788899
Q ss_pred HHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCccccC
Q 023631 219 YIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDM 269 (279)
Q Consensus 219 ~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~~~~ 269 (279)
.|.+.+++.++++.+++++..+. +.+|+++|+++||||+++..+++-+.+
T Consensus 487 ~F~~~Va~~R~~~~~~v~~ia~G-rv~tg~~A~~~GLVD~lG~~~~ai~~a 536 (618)
T PRK10949 487 RFITLVADSRHKTPEQIDKIAQG-HVWTGQDAKANGLVDSLGDFDDAVAKA 536 (618)
T ss_pred HHHHHHHhhCCCCHHHHHHHhcC-CcccHHHHHHcCCCccCCCHHHHHHHH
Confidence 99999999999999999987765 555999999999999999877665433
No 28
>PRK11778 putative inner membrane peptidase; Provisional
Probab=99.73 E-value=4.4e-17 Score=153.76 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=115.8
Q ss_pred cEEEEccccChhHHHHH---HHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHH---HhcCCCeEEEEccccchHHH
Q 023631 98 RVIFIGQNIDEEFSNQI---LATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTM---QSLKSPVGTHCVGFAYHLAG 171 (279)
Q Consensus 98 riIfL~g~I~~~~a~~i---i~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i---~~~~~pV~Tv~~G~AAS~as 171 (279)
-+|.+.|.|+......+ +..++.... +.+.|+|.||||||+|.++.-++..| +..++||++++.++|||+||
T Consensus 93 ~VI~~~G~I~~~~~~~l~e~i~a~l~~A~--~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY 170 (330)
T PRK11778 93 FVLDFKGDIDASEVESLREEITAILAVAK--PGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGY 170 (330)
T ss_pred EEEEEEEEECCCcchhhHHHHHHHHHhcc--CCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHH
Confidence 56889999997654333 333332222 23789999999999998865555544 44567999999999999999
Q ss_pred HHHcCCCCCcEEEccCceEEEecCcc------------c------cCC------------ChhhHHHHHHHHHHHHHHHH
Q 023631 172 FLLAGGEKGNRSAMPLSRIALDSPAG------------A------ARG------------QADDIRNEADELLRVRDYIF 221 (279)
Q Consensus 172 lIl~aG~kg~R~a~P~S~imiHqp~~------------~------~~G------------~a~di~~~a~el~~l~~~i~ 221 (279)
+|++++++ +++.|.+.++..-... + ..| +.++.+...++++.+.+.|.
T Consensus 171 ~iAsaAD~--I~A~P~a~vGSIGVi~~~~~~~~lLeKlGI~~evi~aG~yK~a~~pf~~~see~Re~~q~~Ld~~y~~F~ 248 (330)
T PRK11778 171 MMACVADK--IIAAPFAIVGSIGVVAQIPNFHRLLKKHDIDVELHTAGEYKRTLTLFGENTEEGREKFREELEETHQLFK 248 (330)
T ss_pred HHHHhCCE--EEECCCCeEEeeeeeeeccCHHHHHHHCCCceEEEEecCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999998 9999999764321110 0 111 12333445567788889999
Q ss_pred HHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCccc
Q 023631 222 KELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKE 267 (279)
Q Consensus 222 ~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~~ 267 (279)
+.++++++ ...+++..+... +++++|+++||||+|+..++.-.
T Consensus 249 ~~Va~~R~--~l~~~~va~G~v-~~g~~Al~~GLVD~Ig~~dd~i~ 291 (330)
T PRK11778 249 DFVQRYRP--QLDIDKVATGEH-WYGQQALELGLVDEIQTSDDYLL 291 (330)
T ss_pred HHHHhcCC--cCCHHHHHhCCC-cCHHHHHHCCCCCcCCCHHHHHH
Confidence 99999875 233455555545 58999999999999999877544
No 29
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=99.73 E-value=4.3e-17 Score=145.96 Aligned_cols=159 Identities=14% Similarity=0.179 Sum_probs=128.9
Q ss_pred cccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhc---CCCeEEEEccccchHHHHHHcCCCCC
Q 023631 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGFLLAGGEKG 180 (279)
Q Consensus 104 g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~---~~pV~Tv~~G~AAS~aslIl~aG~kg 180 (279)
+..+......++..|..+..++..+.|+|.+|||||.+.+...|++.|+.. ++||++++.+ |+|+|++|+++|++
T Consensus 24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad~- 101 (222)
T cd07018 24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAADE- 101 (222)
T ss_pred CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCCE-
Confidence 334556678899999999888889999999999999999999999999654 5899999987 99999999999998
Q ss_pred cEEEccCceEEEecCccc------------------cCC--------------ChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023631 181 NRSAMPLSRIALDSPAGA------------------ARG--------------QADDIRNEADELLRVRDYIFKELSRKT 228 (279)
Q Consensus 181 ~R~a~P~S~imiHqp~~~------------------~~G--------------~a~di~~~a~el~~l~~~i~~~ya~~t 228 (279)
+++.|++.+++.-.... ..| +.++.+...+.++.+.+.|.+.+++.+
T Consensus 102 -I~a~p~~~vg~iGv~~~~~~~~~ll~klGv~~~~~~~G~~K~~~~~~~~~~~s~~~r~~~~~~l~~~~~~f~~~Va~~R 180 (222)
T cd07018 102 -IYLNPSGSVELTGLSAETLFFKGLLDKLGVEVQVFRVGEYKSAVEPFTRDDMSPEAREQTQALLDSLWDQYLADVAASR 180 (222)
T ss_pred -EEECCCceEEeeccchhhhhHHHHHHHcCCcEEEEEEeccccccchhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999887543210 011 112223334567778999999999999
Q ss_pred CCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 229 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 229 G~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
+++.+++++..+. ..+++++|++.||||+|+..++..
T Consensus 181 ~~~~~~~~~~~~~-~~~~~~~A~~~GLvD~i~~~~e~~ 217 (222)
T cd07018 181 GLSPDALEALIDL-GGDSAEEALEAGLVDGLAYRDELE 217 (222)
T ss_pred CCCHHHHHHHHHc-CCcHHHHHHHCCCCCcCCcHHHHH
Confidence 9999999988874 455999999999999999776544
No 30
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4e-16 Score=150.49 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=133.5
Q ss_pred CcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEc---cccchHHHHH
Q 023631 97 ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCV---GFAYHLAGFL 173 (279)
Q Consensus 97 ~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~---G~AAS~aslI 173 (279)
-.+|.++|+|++.+++++.+.|...+++ ....++|.+|+|||-+++...|.+.|..++.||+.|+. +.|+|+|++|
T Consensus 28 v~vi~i~g~I~~~s~~~l~r~l~~A~~~-~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI 106 (436)
T COG1030 28 VYVIEIDGAIDPASADYLQRALQSAEEE-NAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYI 106 (436)
T ss_pred EEEEEecCccCHHHHHHHHHHHHHHHhC-CCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHH
Confidence 4678999999999999999998876654 46899999999999999999999999999999888886 4799999999
Q ss_pred HcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHc
Q 023631 174 LAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEY 253 (279)
Q Consensus 174 l~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAley 253 (279)
+++++. .+|.|++.++-.+|..+....+++-. ..+.-..+.+-.++..|++.+..+++.+++.-++++||.++
T Consensus 107 ~m~~hi--aaMAPgT~iGaa~Pi~~~g~~~~~~~-----~~n~~~ay~~~~A~~~gRN~~~ae~~v~~~~~l~a~eA~~~ 179 (436)
T COG1030 107 LMATHI--AAMAPGTNIGAATPIAGGGTSAKEAN-----TTNAAVAYIRSLAEERGRNPTWAERFVTENLSLTAEEALRQ 179 (436)
T ss_pred HHhcCh--hhhCCCCcccccceecCCCCCccchh-----hHHHHHHHHHHHHHHcCCChHHHHHHhhhccCCChhHHHhc
Confidence 999998 99999999999999754422232211 12222344566799999999999999999999999999999
Q ss_pred CCceeecCC
Q 023631 254 GLIDRIIRP 262 (279)
Q Consensus 254 GLID~I~~~ 262 (279)
|+||-|..+
T Consensus 180 ~vid~iA~~ 188 (436)
T COG1030 180 GVIDLIARD 188 (436)
T ss_pred CccccccCC
Confidence 999988765
No 31
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=99.52 E-value=4.2e-13 Score=123.06 Aligned_cols=148 Identities=20% Similarity=0.176 Sum_probs=112.3
Q ss_pred EEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCC
Q 023631 101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKG 180 (279)
Q Consensus 101 fL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg 180 (279)
.+...|+.+.++.+.+.+... ++.++|.|.||||||.|.++..|.+.++..+.+|++++-..|.|+|++|++++++
T Consensus 67 Pi~~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaADe- 142 (285)
T PF01972_consen 67 PIYRYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAADE- 142 (285)
T ss_pred ccceeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCCe-
Confidence 456678888899998888644 3457899999999999999999999999999999999999999999999999998
Q ss_pred cEEEccCceEEEecCccccCC--------------ChhhH----H-HHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHh--
Q 023631 181 NRSAMPLSRIALDSPAGAARG--------------QADDI----R-NEADELLRVRDYIFKELSRKTGQPFEKITKDL-- 239 (279)
Q Consensus 181 ~R~a~P~S~imiHqp~~~~~G--------------~a~di----~-~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~-- 239 (279)
++|.|+|.++--.|..+..- ..+|. . ...+.+.++++.+.+++..+ ++.++.++..
T Consensus 143 -IvM~p~a~LGpiDPqi~~~pA~sil~~~~~K~~~~i~D~tlIladia~KAi~q~~~~v~~lL~~~--~~~eka~~ia~~ 219 (285)
T PF01972_consen 143 -IVMGPGAVLGPIDPQIGQYPAASILKAVEQKPPDEIDDQTLILADIAEKAIRQVREFVKELLKDK--MDEEKAEEIAEK 219 (285)
T ss_pred -EEECCCCccCCCCccccCCChHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence 99999999986666533110 11110 0 11244566666666666443 4555555432
Q ss_pred ------cCCceeCHHHHHHcCC
Q 023631 240 ------SRIKRFGSQEALEYGL 255 (279)
Q Consensus 240 ------~rd~~lsa~EAleyGL 255 (279)
..|.-+|.+||+++||
T Consensus 220 L~~g~~tHdypi~~eea~~lGL 241 (285)
T PF01972_consen 220 LSSGKWTHDYPITVEEAKELGL 241 (285)
T ss_pred hcCCCCCCCCCCCHHHHHHcCC
Confidence 3577899999999997
No 32
>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type. E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.
Probab=99.34 E-value=1.2e-11 Score=125.20 Aligned_cols=154 Identities=13% Similarity=0.094 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHhhcccCCCCcEEEEEeC-CCCChhHHHHHHHHHHhc---CCCeEEEEccccchHHHHHHcCCCCCcEEE
Q 023631 109 EFSNQILATMLYLDSVDDSKRVYMYING-PGGDVTPTLAIYDTMQSL---KSPVGTHCVGFAYHLAGFLLAGGEKGNRSA 184 (279)
Q Consensus 109 ~~a~~ii~~Ll~L~~~d~~k~I~L~INS-PGGsV~aglaIyd~i~~~---~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a 184 (279)
-....++.+|..+..++..+.|+|.+|+ |||.+.....|+++|+.. ++||+++..+ ++|.+|+|++++++ +|+
T Consensus 76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~-~~s~~YylAs~AD~--I~~ 152 (584)
T TIGR00705 76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTN-YSQGQYYLASFADE--IIL 152 (584)
T ss_pred cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEcc-ccchhhhhhhhCCE--EEE
Confidence 3567899999999988899999999996 678888888999998865 4899998765 47999999999998 999
Q ss_pred ccCceEEEecCccc------------------cCC--------------ChhhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 023631 185 MPLSRIALDSPAGA------------------ARG--------------QADDIRNEADELLRVRDYIFKELSRKTGQPF 232 (279)
Q Consensus 185 ~P~S~imiHqp~~~------------------~~G--------------~a~di~~~a~el~~l~~~i~~~ya~~tG~~~ 232 (279)
.|.+.++++-.... ..| +.++-+....+++.+.+.|.+.+++.++++.
T Consensus 153 ~p~G~v~~~G~~~~~~~~k~~ldKlGV~~~v~r~G~yKsa~epf~r~~mS~e~re~~~~~l~~l~~~f~~~Va~~R~l~~ 232 (584)
T TIGR00705 153 NPMGSVDLHGFYTETLFYKGMLDKLGVRWHXFRVGTYKGAVEPFSRKDMSPEARRNYQRWLGELWQNYLSSVSRNRAIPV 232 (584)
T ss_pred CCCceEEeeceecccccHHHHHHHcCCeEEEeeccccccccCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Confidence 99998865432110 011 1223334456678889999999999999999
Q ss_pred HHHHhHhcCCce-------eCHHHHHHcCCceeecCCCCc
Q 023631 233 EKITKDLSRIKR-------FGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 233 e~I~~~~~rd~~-------lsa~EAleyGLID~I~~~~~~ 265 (279)
+++.+..+.-.| .++++|++.||||+|+..++.
T Consensus 233 ~~~~~~a~~~~~~~~~~~g~~a~~A~~~gLVD~l~~~de~ 272 (584)
T TIGR00705 233 QQLAPYAQGLLELLQKLNGDGARYALAEKLVTAVCSYAEA 272 (584)
T ss_pred HHHHHHHhHHHHHHHhhCCchHHHHHHCCCcccCCCHHHH
Confidence 999988765443 389999999999999977654
No 33
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=99.33 E-value=5.8e-12 Score=106.81 Aligned_cols=113 Identities=21% Similarity=0.240 Sum_probs=83.9
Q ss_pred HHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCcc------------c------cCC----------C
Q 023631 151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG------------A------ARG----------Q 202 (279)
Q Consensus 151 i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~------------~------~~G----------~ 202 (279)
.+..++||++++.++++|++++|+++|++ +++.|.+.++..-... | ..| .
T Consensus 2 ~~~~~KpV~a~~~~~~~S~~Y~lAs~ad~--I~~~p~s~vgsiGv~~~~~~~~~~l~k~GV~~~~~~~g~~K~~~~~~~~ 79 (154)
T PF01343_consen 2 FKASGKPVVAYAEGYAASGAYYLASAADE--IYANPSSSVGSIGVSAERLFFKGLLEKLGVKVEVVRSGEYKSAGFPRDP 79 (154)
T ss_dssp HHHTT--EEEEEEEEEETHHHHHHTTSSE--EEE-TT-EEE---EEEEEEE-HHHHHHTT-EEEEEESSTTCCCCCTTSS
T ss_pred ccccCCeEEEEECCcchhHHHHHHHcCCE--EEecCCCEEEEeChhhccccHHHHHHHCCCeEEEEecCccccccCcCCC
Confidence 35678999999999999999999999998 9999999875432210 0 111 1
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 203 --ADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 203 --a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
.++.+...+.++.+.+.|.+.+++.+|++.++++++.+. ..|++++|+++||||+|+..+++.
T Consensus 80 ~s~~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~-~~~~~~~A~~~GLiD~i~~~~~~~ 144 (154)
T PF01343_consen 80 MSEEERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADG-GVFTAQQALELGLIDEIGTFDEAI 144 (154)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCC-HEEEHHHHHHTTSSSEETSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhh-ccccHHHHHHcCchhhcCCHHHHH
Confidence 233344456778889999999999999999999998886 666999999999999999876544
No 34
>PRK10949 protease 4; Provisional
Probab=99.25 E-value=7e-11 Score=120.22 Aligned_cols=156 Identities=12% Similarity=0.091 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHH-HHHHHHHHhcC---CCeEEEEccccchHHHHHHcCCCCCcEE
Q 023631 108 EEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPT-LAIYDTMQSLK---SPVGTHCVGFAYHLAGFLLAGGEKGNRS 183 (279)
Q Consensus 108 ~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~ag-laIyd~i~~~~---~pV~Tv~~G~AAS~aslIl~aG~kg~R~ 183 (279)
+-....++..|..+..++..+.|+|.||||||...+. ..|+++|+..+ +||+++ ...++|.+|+|++++++ +|
T Consensus 94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD~--I~ 170 (618)
T PRK10949 94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFANK--IY 170 (618)
T ss_pred cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCCE--EE
Confidence 3446689999999988899999999999998876655 78999886654 799987 55668999999999998 99
Q ss_pred EccCceEEEecCccc------------------cCC------------C--hhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 184 AMPLSRIALDSPAGA------------------ARG------------Q--ADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 184 a~P~S~imiHqp~~~------------------~~G------------~--a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
+.|.+.++++-.... ..| + .++-+.....+..+.+.+.+.+++.++++
T Consensus 171 l~P~G~v~~~G~~~~~~~~k~lLdKlGV~~~v~r~G~yKsA~epf~r~~mS~e~Re~~~~ll~~l~~~f~~~VA~~R~l~ 250 (618)
T PRK10949 171 LSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDMSPAAREADSRWIGELWQNYLNTVAANRQIT 250 (618)
T ss_pred ECCCceEEEeeeecchhhHHHHHHHcCCeEEEEEecCCCCCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999998876543211 011 1 12223344567888999999999999999
Q ss_pred HHHHHhHhcC-------CceeCHHHHHHcCCceeecCCCCcc
Q 023631 232 FEKITKDLSR-------IKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 232 ~e~I~~~~~r-------d~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
.+++....++ .--++|++|++.||||+|+..++..
T Consensus 251 ~~~v~~~a~~~~~~l~~~~~~~a~~Al~~GLVD~l~~~de~~ 292 (618)
T PRK10949 251 PQQLFPGAQGILEGLTKVGGDTAKYALDNKLVDALASSAEIE 292 (618)
T ss_pred HHHHHHHHHHHHHhhhhcCCccHHHHHHCCCCCcCCCHHHHH
Confidence 9998643322 1235899999999999999876643
No 35
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=98.91 E-value=3e-08 Score=85.66 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=99.4
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChh-----------------HHHHHHHHHHhcCCCeEEEEcc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVT-----------------PTLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~-----------------aglaIyd~i~~~~~pV~Tv~~G 164 (279)
++.++.+.+.+.+..++.++..+.|+|.-+ |.|+++. ....++..|..+++||++.+.|
T Consensus 23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G 102 (195)
T cd06558 23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG 102 (195)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 567788899999888877666666666655 5566543 2245667777889999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
.|.+.|..++++++. |++.++++|.+..+..+..-..-- ...+.+.+ ......+++-....
T Consensus 103 ~a~g~G~~la~~~D~--~i~~~~~~~~~pe~~~G~~p~~g~-------~~~l~~~~----------g~~~a~~~~l~g~~ 163 (195)
T cd06558 103 AALGGGLELALACDI--RIAAEDAKFGLPEVKLGLVPGGGG-------TQRLPRLV----------GPARARELLLTGRR 163 (195)
T ss_pred eeecHHHHHHHhCCE--EEecCCCEEechhhhcCCCCCCcH-------HHHHHHHh----------CHHHHHHHHHcCCc
Confidence 999999999999998 999999999887665442211000 11122211 23333444445777
Q ss_pred eCHHHHHHcCCceeecCCCCc
Q 023631 245 FGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 245 lsa~EAleyGLID~I~~~~~~ 265 (279)
++++||+++||||++....+.
T Consensus 164 ~~a~ea~~~Glv~~~~~~~~l 184 (195)
T cd06558 164 ISAEEALELGLVDEVVPDEEL 184 (195)
T ss_pred cCHHHHHHcCCCCeecChhHH
Confidence 899999999999999987443
No 36
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=5.8e-07 Score=82.04 Aligned_cols=148 Identities=11% Similarity=0.078 Sum_probs=99.3
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhHH------------------HHHHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT------------------LAIYDTM 151 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~ag------------------laIyd~i 151 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.= =|.|+++... ..++..|
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (260)
T PRK07511 15 VLTLSNPGARNALHPDMYAAGIEALNTAERDPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAI 94 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHhccCCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHH
Confidence 3566665 77888889999888887665556555531 1344554321 2355667
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
...++||++.+.|.|..+|..|++++|- |++.++++|.+.....|.....-- ...+.+. ..
T Consensus 95 ~~~~kpvIAav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~~----------vg 155 (260)
T PRK07511 95 RAFPKPVIAAVEGAAAGAGFSLALACDL--LVAARDAKFVMAYVKVGLTPDGGG-------SWFLARA----------LP 155 (260)
T ss_pred HcCCCCEEEEECCeeehHHHHHHHhCCE--EEeeCCCEEeccccccCcCCCchH-------HHHHHHH----------hC
Confidence 7889999999999999999999999998 999999998875544432111000 0011111 12
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.....+++-....|+++||+++||||+|.+.++.
T Consensus 156 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~~ 189 (260)
T PRK07511 156 RQLATELLLEGKPISAERLHALGVVNRLAEPGQA 189 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCccEeeCchHH
Confidence 3334555545677899999999999999976543
No 37
>PRK05869 enoyl-CoA hydratase; Validated
Probab=98.68 E-value=6.7e-07 Score=80.18 Aligned_cols=148 Identities=18% Similarity=0.254 Sum_probs=99.7
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH---------------HHHHHHHHhcC
Q 023631 99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT---------------LAIYDTMQSLK 155 (279)
Q Consensus 99 iIfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag---------------laIyd~i~~~~ 155 (279)
+|.|+.+ ++.++...+...+..++.++..+.|+|.=+ |.|+++... ..++..|...+
T Consensus 20 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (222)
T PRK05869 20 TLLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIP 99 (222)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCC
Confidence 3555655 778888899998888887666666655311 334553321 24566788889
Q ss_pred CCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 023631 156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 235 (279)
Q Consensus 156 ~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I 235 (279)
+||++.+.|.|..+|..++++++. |++.++++|.+-....|.....-- ...+.+ .. .....
T Consensus 100 kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~--------~i--g~~~a 160 (222)
T PRK05869 100 KPTVAAITGYALGAGLTLALAADW--RVSGDNVKFGATEILAGLAPSGDG-------MARLTR--------AA--GPSRA 160 (222)
T ss_pred CCEEEEEcCEeecHHHHHHHhCCE--EEecCCCEEcCchhccCCCCCccH-------HHHHHH--------Hh--CHHHH
Confidence 999999999999999999999998 999999988765544332111000 011111 11 23333
Q ss_pred HhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 236 TKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 236 ~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.+++-...+|+++||+++||||++...++.
T Consensus 161 ~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 190 (222)
T PRK05869 161 KELVFSGRFFDAEEALALGLIDEMVAPDDV 190 (222)
T ss_pred HHHHHcCCCcCHHHHHHCCCCCEeeCchHH
Confidence 444445668999999999999999976543
No 38
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=98.68 E-value=5.1e-07 Score=82.20 Aligned_cols=146 Identities=16% Similarity=0.154 Sum_probs=98.2
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEE----EeCCCCChhH--------------HHHHHHHHHhcCC
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTP--------------TLAIYDTMQSLKS 156 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~----INSPGGsV~a--------------glaIyd~i~~~~~ 156 (279)
|.|+-+ ++.++...+...+..++.++..+.|+|. .=|.|+++.. ...+++.|..+++
T Consensus 18 i~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~k 97 (259)
T PRK06688 18 ITINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPK 97 (259)
T ss_pred EEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCC
Confidence 455554 7888889999998888776656666654 1244555422 2346677888899
Q ss_pred CeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 023631 157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 236 (279)
Q Consensus 157 pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~ 236 (279)
||++.+.|.|..+|.-++++++- |++.++++|.+.....|.....-- ...+.+. .| .....
T Consensus 98 p~Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~-------~~~l~~~--------~G--~~~a~ 158 (259)
T PRK06688 98 PVVAAVNGPAVGVGVSLALACDL--VYASESAKFSLPFAKLGLCPDAGG-------SALLPRL--------IG--RARAA 158 (259)
T ss_pred CEEEEECCeeecHHHHHHHhCCE--EEecCCCEecCchhhcCCCCCcch-------hhHHHHH--------hh--HHHHH
Confidence 99999999999999999999998 999999998876554432111000 0011111 11 12223
Q ss_pred hHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 237 KDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 237 ~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
+++-....|+++||+++||||+|...++
T Consensus 159 ~l~l~g~~~~a~eA~~~Glv~~v~~~~~ 186 (259)
T PRK06688 159 EMLLLGEPLSAEEALRIGLVNRVVPAAE 186 (259)
T ss_pred HHHHhCCccCHHHHHHcCCcceecCHHH
Confidence 3333455689999999999999987544
No 39
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=98.66 E-value=6.6e-07 Score=81.69 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=100.1
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH-----------------HHHHHHHHh
Q 023631 99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-----------------LAIYDTMQS 153 (279)
Q Consensus 99 iIfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag-----------------laIyd~i~~ 153 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++..- ..+++.|..
T Consensus 16 ~itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (257)
T PRK06495 16 VVTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRE 95 (257)
T ss_pred EEEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHh
Confidence 3666665 778888899998888876655555555321 334444321 134566778
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 233 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e 233 (279)
+++||++.+.|.|..+|.-|++++|- |++.++++|.+-....|..|-.. .+ .+.. ...
T Consensus 96 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~~----------~l--------~~~~--g~~ 153 (257)
T PRK06495 96 CAKPVIAAVNGPALGAGLGLVASCDI--IVASENAVFGLPEIDVGLAGGGK----------HA--------MRLF--GHS 153 (257)
T ss_pred CCCCEEEEECCeeehhHHHHHHhCCE--EEecCCCEeeChhhccCccccHH----------HH--------HHHh--CHH
Confidence 89999999999999999999999998 99999999877655544432210 01 1112 334
Q ss_pred HHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 234 KITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 234 ~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
...+++-....++++||+++||||+|...++
T Consensus 154 ~a~~lll~g~~~~a~eA~~~GLv~~vv~~~~ 184 (257)
T PRK06495 154 LTRRMMLTGYRVPAAELYRRGVIEACLPPEE 184 (257)
T ss_pred HHHHHHHcCCeeCHHHHHHcCCcceecCHHH
Confidence 4455555567789999999999999987654
No 40
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=98.65 E-value=8.6e-07 Score=81.84 Aligned_cols=146 Identities=16% Similarity=0.177 Sum_probs=98.0
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH-------------------HHHHHHH
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------LAIYDTM 151 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------laIyd~i 151 (279)
|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++... ..+++.|
T Consensus 30 itlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 109 (277)
T PRK08258 30 ITLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAM 109 (277)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHH
Confidence 455543 777888888888887776555555554211 445555321 1456678
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccC-CChhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQ 230 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~a~di~~~a~el~~l~~~i~~~ya~~tG~ 230 (279)
..+++||++.+.|.|..+|.-|++++|- |++.++++|.+.....|.. +..-- ...+.+. .
T Consensus 110 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p~~~g~-------~~~l~~~--------v-- 170 (277)
T PRK08258 110 RACPQPIIAAVDGVCAGAGAILAMASDL--RLGTPSAKTAFLFTRVGLAGADMGA-------CALLPRI--------I-- 170 (277)
T ss_pred HhCCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEEeccccccCcCCCCchH-------HHHHHHH--------h--
Confidence 8889999999999999999999999998 9999999998766655432 11100 0111111 1
Q ss_pred CHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 231 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 231 ~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
......+++-....|+++||+++||||+|....+
T Consensus 171 G~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 204 (277)
T PRK08258 171 GQGRASELLYTGRSMSAEEGERWGFFNRLVEPEE 204 (277)
T ss_pred CHHHHHHHHHcCCCCCHHHHHHcCCCcEecCHHH
Confidence 2222334444456779999999999999987654
No 41
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=98.63 E-value=8.2e-07 Score=81.25 Aligned_cols=148 Identities=18% Similarity=0.187 Sum_probs=97.0
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEE-----eCCCCChhH--------------HHHHHHHHHhcC
Q 023631 99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI-----NGPGGDVTP--------------TLAIYDTMQSLK 155 (279)
Q Consensus 99 iIfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-----NSPGGsV~a--------------glaIyd~i~~~~ 155 (279)
+|.|+.+ ++.++...+...+..++.++..+.|+|.= =|.|+++.. ...++..|..++
T Consensus 15 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 94 (261)
T PRK03580 15 EITLDRPKANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLD 94 (261)
T ss_pred EEEECCccccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCC
Confidence 3556555 67778888888888777655555555531 244555532 123456778889
Q ss_pred CCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 023631 156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 235 (279)
Q Consensus 156 ~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I 235 (279)
+||++.+.|.|..+|.-++++|+- |++.++++|.+-....|..- +..- ...+-+. . .....
T Consensus 95 kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p---~~g~----~~~l~~~--------v--g~~~a 155 (261)
T PRK03580 95 KPVIAAVNGYAFGGGFELALAADF--IVCADNASFALPEAKLGIVP---DSGG----VLRLPKR--------L--PPAIA 155 (261)
T ss_pred CCEEEEECCeeehHHHHHHHHCCE--EEecCCCEEeCcccccCcCC---CccH----HHHHHHH--------h--CHHHH
Confidence 999999999999999999999998 99999998865433333211 1000 0111111 1 23334
Q ss_pred HhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 236 TKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 236 ~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.+++-....++++||+++||||+|...++.
T Consensus 156 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 185 (261)
T PRK03580 156 NEMVMTGRRMDAEEALRWGIVNRVVPQAEL 185 (261)
T ss_pred HHHHHhCCccCHHHHHHcCCCcEecCHhHH
Confidence 444444567899999999999999886553
No 42
>COG3904 Predicted periplasmic protein [Function unknown]
Probab=98.61 E-value=6.6e-07 Score=79.44 Aligned_cols=157 Identities=14% Similarity=0.160 Sum_probs=110.4
Q ss_pred hcCcE--EEEccccChhHHHHHHHHHHhhcccCCCCcEE-EEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccchHHH
Q 023631 95 YRERV--IFIGQNIDEEFSNQILATMLYLDSVDDSKRVY-MYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAG 171 (279)
Q Consensus 95 ~~~ri--IfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~-L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~as 171 (279)
+..|. +-+.+++-+..+....+.+..- .....+. +.+|||||+|..++++-..|+..+-++..-...+|+|...
T Consensus 72 ~dgr~l~VvVse~~a~~da~sal~~lir~---~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaCp 148 (245)
T COG3904 72 LDGRQLPVVVSEPGANVDAASALGRLIRK---AGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASACP 148 (245)
T ss_pred ccCceeeEEEcCCCCCccHHHHHHHHHhc---cCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccch
Confidence 33444 4577777766555556666532 2233344 7799999999999999999999998888888899999999
Q ss_pred HHHcCCCCCcEEEccCceEEEecCccccCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHh----cCCceeC
Q 023631 172 FLLAGGEKGNRSAMPLSRIALDSPAGAARGQ-ADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDL----SRIKRFG 246 (279)
Q Consensus 172 lIl~aG~kg~R~a~P~S~imiHqp~~~~~G~-a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~----~rd~~ls 246 (279)
++|++|.+ |++-|.+.|++||+.....-. ... .+++...+..-.=...|-...|.++..++.+. ++-++++
T Consensus 149 l~fagGvr--Rvve~~ayiGVHq~~~~g~~~r~~~--~~a~Sanq~~tar~a~ylrEMgigpgLlq~ml~tpp~dir~l~ 224 (245)
T COG3904 149 LMFAGGVR--RVVEDFAYIGVHQITTTGRRERIVN--GKAKSANQKVTARLAAYLREMGIGPGLLQMMLATPPSDIRQLG 224 (245)
T ss_pred hhhhccee--eeecccceeeeeeccccCCccccCc--HhhhhhhhhhHHHHHHHHHHcCCCHHHHHHHhcCChHhhhhhh
Confidence 99999998 999999999999998653221 111 11111111111113345566788887776655 3457899
Q ss_pred HHHHHHcCCcee
Q 023631 247 SQEALEYGLIDR 258 (279)
Q Consensus 247 a~EAleyGLID~ 258 (279)
.+|-.+|.|+.+
T Consensus 225 ~kem~~~~L~t~ 236 (245)
T COG3904 225 LKEMTAMKLVTS 236 (245)
T ss_pred HHHHhhhccccc
Confidence 999999998764
No 43
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=98.59 E-value=9.8e-07 Score=80.87 Aligned_cols=147 Identities=15% Similarity=0.191 Sum_probs=96.8
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe------CCCCChhHH--------------HHHHHHHHh
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN------GPGGDVTPT--------------LAIYDTMQS 153 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN------SPGGsV~ag--------------laIyd~i~~ 153 (279)
+|.|+-+ ++.++...+.+.+..++.++ .+.|+|.=+ |.|+++... ..+++.|..
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~ 94 (261)
T PRK11423 16 TITFNNPAKRNALSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQK 94 (261)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHh
Confidence 3555554 77888888888888777544 555555421 345554321 235667888
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 233 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e 233 (279)
.++||++.+.|.|..+|.-|++++|- |++.++++|.+-....|..-...-. ..+.+. . ...
T Consensus 95 ~~kPvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~~~~g~~-------~~l~~~--------v--g~~ 155 (261)
T PRK11423 95 FPKPVIAMVEGSVWGGAFELIMSCDL--IIAASTSTFAMTPANLGVPYNLSGI-------LNFTND--------A--GFH 155 (261)
T ss_pred CCCCEEEEEecEEechHHHHHHhCCE--EEecCCCEecCchhhcCCCCCccHH-------HHHHHH--------h--HHH
Confidence 89999999999999999999999998 9999999886544433321100000 111111 1 223
Q ss_pred HHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 234 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 234 ~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
...+++-....++++||+++||||+|...++.
T Consensus 156 ~a~~l~l~g~~~~a~eA~~~GLv~~vv~~~~l 187 (261)
T PRK11423 156 IVKEMFFTASPITAQRALAVGILNHVVEVEEL 187 (261)
T ss_pred HHHHHHHcCCCcCHHHHHHcCCcCcccCHHHH
Confidence 33444445667899999999999999876543
No 44
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=98.58 E-value=1.4e-06 Score=79.67 Aligned_cols=147 Identities=15% Similarity=0.168 Sum_probs=99.7
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH---------------HHHHHHHHHh
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP---------------TLAIYDTMQS 153 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a---------------glaIyd~i~~ 153 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++.. ...+++.|..
T Consensus 19 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~ 98 (256)
T PRK06143 19 TLTIRNAGSLNILGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRH 98 (256)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHh
Confidence 4556654 788888999999988876665565555321 34555432 1235667778
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 233 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e 233 (279)
.++||++.+.|.|..+|.-|+++||- |++.++++|.+-....|. +... - ...+ .+.. ...
T Consensus 99 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~---p~~~-~----~~~l--------~~~i--G~~ 158 (256)
T PRK06143 99 FPVPVIARIPGWCLGGGLELAAACDL--RIAAHDAQFGMPEVRVGI---PSVI-H----AALL--------PRLI--GWA 158 (256)
T ss_pred CCCCEEEEECCEEeehhHHHHHhCCE--EEecCCCEEeCCccccCC---CCcc-H----HHHH--------HHhc--CHH
Confidence 89999999999999999999999998 999999988764444332 1110 0 0011 1122 233
Q ss_pred HHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 234 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 234 ~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
...+++-....++|+||+++||||+|...++.
T Consensus 159 ~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 190 (256)
T PRK06143 159 RTRWLLLTGETIDAAQALAWGLVDRVVPLAEL 190 (256)
T ss_pred HHHHHHHcCCcCCHHHHHHCCCcCeecCHHHH
Confidence 34555545677899999999999999976543
No 45
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=98.57 E-value=1.5e-06 Score=79.24 Aligned_cols=148 Identities=13% Similarity=0.119 Sum_probs=98.7
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhH-------------HHHHHHHHHhcCC
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP-------------TLAIYDTMQSLKS 156 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~a-------------glaIyd~i~~~~~ 156 (279)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.= =|.|+++.. ...+++.|..+++
T Consensus 14 ~itlnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k 93 (255)
T PRK09674 14 LLTLNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNK 93 (255)
T ss_pred EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCC
Confidence 3555543 67788888888888877665555555531 144555432 1235677888999
Q ss_pred CeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 023631 157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 236 (279)
Q Consensus 157 pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~ 236 (279)
||++.+.|.|..+|.-|++++|- |++.++++|.+.....|..-..-- ...+ .+.. ......
T Consensus 94 PvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l--------~~~i--g~~~a~ 154 (255)
T PRK09674 94 PLIAAVNGYALGAGCELALLCDI--VIAGENARFGLPEITLGIMPGAGG-------TQRL--------IRSV--GKSLAS 154 (255)
T ss_pred CEEEEECCEeehHHHHHHHhCCE--EEecCCCEEeCchhhcCCCCCccH-------HHHH--------HHHh--CHHHHH
Confidence 99999999999999999999998 999999998765554432111000 0011 1112 233334
Q ss_pred hHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 237 KDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 237 ~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
+++-....|+++||+++||||+|...++.
T Consensus 155 ~l~l~g~~~~a~eA~~~Glv~~vv~~~~~ 183 (255)
T PRK09674 155 QMVLTGESITAQQAQQAGLVSEVFPPELT 183 (255)
T ss_pred HHHHcCCccCHHHHHHcCCCcEecChHHH
Confidence 45545667899999999999999876543
No 46
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=98.57 E-value=2.2e-06 Score=78.63 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=99.1
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH-------------HHHHHHHHHhcCC
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------TLAIYDTMQSLKS 156 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a-------------glaIyd~i~~~~~ 156 (279)
+|.|+.+ ++.++.+.+...+..++.++..+.|+|.=+ |.|+++.. ...++..|..+++
T Consensus 16 ~Itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~k 95 (258)
T PRK06190 16 TLTLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRK 95 (258)
T ss_pred EEEEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCC
Confidence 3555544 788888999998888876655565555322 45566542 1246677888999
Q ss_pred CeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 023631 157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 236 (279)
Q Consensus 157 pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~ 236 (279)
||++.+.|.|..+|.-|++++|- |++.++++|.+-....|.. .+..- ...+.+ .. ......
T Consensus 96 PvIAaV~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~l~r--------~v--G~~~a~ 156 (258)
T PRK06190 96 PVIGAINGAAVTGGLELALACDI--LIASERARFADTHARVGIL---PGWGL----SVRLPQ--------KV--GIGRAR 156 (258)
T ss_pred CEEEEECCEeecHHHHHHHhCCE--EEEeCCCEEECcccccCcC---CCccH----HHHHHH--------Hh--CHHHHH
Confidence 99999999999999999999998 9999999987543333211 11000 011111 11 233344
Q ss_pred hHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 237 KDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 237 ~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
+++-....|+|+||+++||||++...++
T Consensus 157 ~l~ltg~~~~a~eA~~~GLv~~vv~~~~ 184 (258)
T PRK06190 157 RMSLTGDFLDAADALRAGLVTEVVPHDE 184 (258)
T ss_pred HHHHhCCccCHHHHHHcCCCeEecCHhH
Confidence 4554566789999999999999987654
No 47
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=1.1e-06 Score=80.80 Aligned_cols=146 Identities=15% Similarity=0.135 Sum_probs=96.9
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH-------------------------
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------------- 144 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------------------- 144 (279)
+|.|+.+ ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++..-
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (272)
T PRK06210 18 VITLNRPDRLNAWTPVMEAEVYAAMDRAEADPAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDY 97 (272)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHhccCCCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhH
Confidence 3556654 778888888888888776554555555421 233444321
Q ss_pred HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccC-CChhhHHHHHHHHHHHHHHHHHH
Q 023631 145 LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKE 223 (279)
Q Consensus 145 laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~a~di~~~a~el~~l~~~i~~~ 223 (279)
..+++.|..+++||++.+.|.|..+|.-|+++++- |++.++++|.+..+..|.. +-... ..+-+.
T Consensus 98 ~~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p~~g~~--------~~l~~~---- 163 (272)
T PRK06210 98 QTRYHFLTALRKPVIAAINGACAGIGLTHALMCDV--RFAADGAKFTTAFARRGLIAEHGIS--------WILPRL---- 163 (272)
T ss_pred HHHHHHHHhCCCCEEEEECCeeehHHHHHHHhCCE--EEEeCCCEEechHHhcCCCCCCchh--------hhhHhh----
Confidence 12346677889999999999999999999999998 9999999998766554421 10000 001111
Q ss_pred HHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 224 LSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 224 ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
....+..+++-....++|+||+++||||+|...++
T Consensus 164 ------ig~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 198 (272)
T PRK06210 164 ------VGHANALDLLLSARTFYAEEALRLGLVNRVVPPDE 198 (272)
T ss_pred ------hCHHHHHHHHHcCCccCHHHHHHcCCcceecCHHH
Confidence 12333445544456669999999999999987654
No 48
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=2.3e-06 Score=78.12 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=96.0
Q ss_pred EEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH---------------HHHHHHHHHhcC
Q 023631 100 IFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP---------------TLAIYDTMQSLK 155 (279)
Q Consensus 100 IfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a---------------glaIyd~i~~~~ 155 (279)
|.|+.+ ++.++...+...+..++.++..+.|+|.=+ |.|+++.. ...++..|..++
T Consensus 16 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 95 (258)
T PRK09076 16 LTLNNPPANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFR 95 (258)
T ss_pred EEECCCCcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCC
Confidence 445544 778888888888888876655555555321 33455432 123456678889
Q ss_pred CCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccC-CChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 023631 156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPFEK 234 (279)
Q Consensus 156 ~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~ 234 (279)
+||++.+.|.|..+|.-|++++|- |++.++++|.+-....|.. +-..- ..+.+. .| ...
T Consensus 96 kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~~--------~~l~~~--------iG--~~~ 155 (258)
T PRK09076 96 GVSIAAINGYAMGGGLECALACDI--RIAEEQAQMALPEASVGLLPCAGGT--------QNLPWL--------VG--EGW 155 (258)
T ss_pred CCEEEEECCEEecHHHHHHHhCCE--EEecCCCEeeCcccccCCCCCccHH--------HHHHHH--------hC--HHH
Confidence 999999999999999999999998 9999999987654443321 11000 011111 12 222
Q ss_pred HHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 235 ITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 235 I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
..+++-....|+++||+++||||+|+...+.
T Consensus 156 a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 186 (258)
T PRK09076 156 AKRMILCGERVDAATALRIGLVEEVVEKGEA 186 (258)
T ss_pred HHHHHHcCCcCCHHHHHHCCCCceecCchhH
Confidence 2334434566799999999999999986543
No 49
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=98.55 E-value=1.9e-06 Score=78.91 Aligned_cols=141 Identities=9% Similarity=0.077 Sum_probs=93.0
Q ss_pred cChhHHHHHHHHHHhhcccCC-CCcEEEEEe----CCCCChhH--------------H-------HHHHHHHHhcCCCeE
Q 023631 106 IDEEFSNQILATMLYLDSVDD-SKRVYMYIN----GPGGDVTP--------------T-------LAIYDTMQSLKSPVG 159 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~-~k~I~L~IN----SPGGsV~a--------------g-------laIyd~i~~~~~pV~ 159 (279)
++.++...+.+.+..++.+++ .+.|+|.=. |.|+++.. + ..++..|...++||+
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvI 107 (266)
T PRK05981 28 VSIDMLGGLAEALDAIEDGKAEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCPIV 107 (266)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 677888888888887765443 455555422 34455432 1 135567888899999
Q ss_pred EEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHh
Q 023631 160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDL 239 (279)
Q Consensus 160 Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~ 239 (279)
+.+.|.|..+|.-+++++|- |++.++++|.+..+..|.....-- ...+.+.+ ......+++
T Consensus 108 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~~e~~lG~~p~~g~-------~~~l~~~v----------g~~~a~~l~ 168 (266)
T PRK05981 108 TAVNGPAAGVGMSFALMGDL--ILCARSAYFLQAFRRIGLVPDGGS-------TWLLPRLV----------GKARAMELS 168 (266)
T ss_pred EEECCEeehHHHHHHHhCCE--EEecCCCEEechHhhcCCCCCccH-------HHHHHHHh----------HHHHHHHHH
Confidence 99999999999999999998 999999999876665432111000 00111111 122233344
Q ss_pred cCCceeCHHHHHHcCCceeecCCCCc
Q 023631 240 SRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 240 ~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
-....|+++||+++||||+|...++.
T Consensus 169 l~g~~~~a~eA~~~Glv~~vv~~~~~ 194 (266)
T PRK05981 169 LLGEKLPAETALQWGLVNRVVDDAEL 194 (266)
T ss_pred HhCCCcCHHHHHHcCCceEeeCHhHH
Confidence 34566899999999999999876543
No 50
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=98.54 E-value=1.7e-06 Score=78.06 Aligned_cols=145 Identities=18% Similarity=0.209 Sum_probs=97.2
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEeCC------CCCh---------------hHHHHHHHHHHh
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGP------GGDV---------------TPTLAIYDTMQS 153 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSP------GGsV---------------~aglaIyd~i~~ 153 (279)
|.|+.+ ++.++...+...|..++.++..+ .+.|.+. |+++ .....++..|..
T Consensus 11 i~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~ 88 (245)
T PF00378_consen 11 ITLNRPEKRNALNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLAN 88 (245)
T ss_dssp EEEECGGGTTEBSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchh
Confidence 445555 77888999999999888776556 3344443 3443 233467788889
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 233 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e 233 (279)
+++||++.+.|.|..+|.-+++++|- |++.++++|.+.....|.....--. ..+.+.+ | ..
T Consensus 89 ~~kp~Iaav~G~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~G~~p~~g~~-------~~l~r~~--------g--~~ 149 (245)
T PF00378_consen 89 FPKPTIAAVNGHAVGGGFELALACDF--RIAAEDAKFGFPEVRLGIFPGAGGT-------FRLPRLI--------G--PS 149 (245)
T ss_dssp SSSEEEEEESSEEETHHHHHHHHSSE--EEEETTTEEETGGGGGTSSSTSTHH-------HHHHHHH--------H--HH
T ss_pred hhhheeecccccccccccccccccce--EEeecccceeeeecccCcccccccc-------cccceee--------e--cc
Confidence 99999999999999999999999998 9999999976544433321111111 1111111 1 11
Q ss_pred HHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 234 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 234 ~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
...+++-....++|+||+++||||+|...++.
T Consensus 150 ~a~~l~l~g~~~~a~eA~~~Glv~~v~~~~~l 181 (245)
T PF00378_consen 150 RARELLLTGEPISAEEALELGLVDEVVPDEEL 181 (245)
T ss_dssp HHHHHHHHTCEEEHHHHHHTTSSSEEESGGGH
T ss_pred cccccccccccchhHHHHhhcceeEEcCchhh
Confidence 12233323456799999999999999987763
No 51
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=98.54 E-value=2.2e-06 Score=78.39 Aligned_cols=141 Identities=16% Similarity=0.109 Sum_probs=93.1
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH-------------HHHHHHHHHhcCCCeEEEEccccch
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFAYH 168 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a-------------glaIyd~i~~~~~pV~Tv~~G~AAS 168 (279)
++.++...+.+.+..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|..
T Consensus 32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G 111 (261)
T PRK08138 32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG 111 (261)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence 778888888888888876655555555321 34455432 1235567778899999999999999
Q ss_pred HHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHH
Q 023631 169 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQ 248 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~ 248 (279)
+|.-|+++++- |++.++++|.+-....|..-..-- ...+ .+.. ......+++-....|+++
T Consensus 112 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l--------~~~v--G~~~a~~l~l~g~~~~a~ 172 (261)
T PRK08138 112 GGCELAMHADI--IVAGESASFGQPEIKVGLMPGAGG-------TQRL--------VRAV--GKFKAMRMALTGCMVPAP 172 (261)
T ss_pred HHHHHHHhCCE--EEecCCCEeeCcccccccCCCCcH-------HHHH--------HHHh--CHHHHHHHHHcCCCCCHH
Confidence 99999999998 999999988764443332100000 0011 1112 222334444445678999
Q ss_pred HHHHcCCceeecCCCCc
Q 023631 249 EALEYGLIDRIIRPPRI 265 (279)
Q Consensus 249 EAleyGLID~I~~~~~~ 265 (279)
||+++||||+|...++.
T Consensus 173 eA~~~Glv~~vv~~~~l 189 (261)
T PRK08138 173 EALAIGLVSEVVEDEQT 189 (261)
T ss_pred HHHHCCCCcEecCchHH
Confidence 99999999999876553
No 52
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=98.53 E-value=1.9e-06 Score=78.75 Aligned_cols=138 Identities=14% Similarity=0.181 Sum_probs=93.2
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhHH--------------HHHHHHHHhcCCCeEEEEcccc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT--------------LAIYDTMQSLKSPVGTHCVGFA 166 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~ag--------------laIyd~i~~~~~pV~Tv~~G~A 166 (279)
++.++.+.+...+..++.++..+.|+|.=+ |.|+++..- ..+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 105 (256)
T TIGR03210 26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA 105 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 677788888888887776665565555321 345665421 2356678888999999999999
Q ss_pred chHHHHHHcCCCCCcEEEccCceEEEecCccccC-CC-hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQ-ADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 167 AS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~-a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
..+|.-|+++||- |++.++++|.+-.+..|.. +- ... .+ .+..| .....+++-....
T Consensus 106 ~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~~~~~~~~---------~l--------~~~vG--~~~A~~lll~g~~ 164 (256)
T TIGR03210 106 IGGGNVLVTICDL--TIASEKAQFGQVGPKVGSVDPGYGTA---------LL--------ARVVG--EKKAREIWYLCRR 164 (256)
T ss_pred ehhhHHHHHhCCE--EEEeCCCEEecccccccccCCccHHH---------HH--------HHHhC--HHHHHHHHHhCCC
Confidence 9999999999998 9999999987654443311 10 000 11 11112 2222333333567
Q ss_pred eCHHHHHHcCCceeecCCCC
Q 023631 245 FGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 245 lsa~EAleyGLID~I~~~~~ 264 (279)
|+|+||+++||||+|...++
T Consensus 165 ~~a~eA~~~Glv~~vv~~~~ 184 (256)
T TIGR03210 165 YTAQEALAMGLVNAVVPHDQ 184 (256)
T ss_pred cCHHHHHHcCCceeeeCHHH
Confidence 89999999999999987654
No 53
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=2.2e-06 Score=78.29 Aligned_cols=140 Identities=16% Similarity=0.138 Sum_probs=91.1
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH---------------HHHHHHHHHhcCCCeEEEEcccc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP---------------TLAIYDTMQSLKSPVGTHCVGFA 166 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a---------------glaIyd~i~~~~~pV~Tv~~G~A 166 (279)
++.++...+...+..++ +..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|.|
T Consensus 26 l~~~~~~~l~~al~~~~--~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 103 (255)
T PRK08150 26 LNDGLIAALRAAFARLP--EGVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALHGAV 103 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence 67777888888877765 44555554322 33455432 12356677788999999999999
Q ss_pred chHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeC
Q 023631 167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFG 246 (279)
Q Consensus 167 AS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ls 246 (279)
..+|.-|+++||. |++.++++|.+-....|..-..-- ...+.+ ..| .....+++-....|+
T Consensus 104 ~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~--------~iG--~~~a~~l~ltg~~~~ 164 (255)
T PRK08150 104 VGGGLELASAAHI--RVADESTYFALPEGQRGIFVGGGG-------SVRVPR--------LIG--VARMTDMMLTGRVYD 164 (255)
T ss_pred EcHHHHHHHhCCE--EEEeCCCEEeccccccCCCCCccH-------HHHHHH--------HhC--HHHHHHHHHcCCcCC
Confidence 9999999999998 999999988764443332110000 001111 112 222344443456789
Q ss_pred HHHHHHcCCceeecCCCCcc
Q 023631 247 SQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 247 a~EAleyGLID~I~~~~~~~ 266 (279)
++||+++||||+|...++..
T Consensus 165 a~eA~~~Glv~~vv~~~~l~ 184 (255)
T PRK08150 165 AQEGERLGLAQYLVPAGEAL 184 (255)
T ss_pred HHHHHHcCCccEeeCchHHH
Confidence 99999999999999876543
No 54
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=98.53 E-value=2.6e-06 Score=77.50 Aligned_cols=148 Identities=17% Similarity=0.128 Sum_probs=97.2
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH--------------HHHHHHHHHhcC
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP--------------TLAIYDTMQSLK 155 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a--------------glaIyd~i~~~~ 155 (279)
+|.|+-+ ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++.. ...++..|..++
T Consensus 18 ~itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (251)
T PRK06023 18 VIRFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAE 97 (251)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCC
Confidence 4555544 778888888888888876655555555211 34455421 124566788889
Q ss_pred CCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 023631 156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 235 (279)
Q Consensus 156 ~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I 235 (279)
+||++.+.|.|..+|.-|++++|- |++.++++|.+.....|.....--. ..+.+ .. .....
T Consensus 98 kPvIAav~G~a~GgG~~la~acD~--ria~~~a~f~~pe~~~Gl~p~~g~~-------~~l~~--------~~--g~~~a 158 (251)
T PRK06023 98 KPIVSGVDGLAIGIGTTIHLHCDL--TFASPRSLFRTPFVDLALVPEAGSS-------LLAPR--------LM--GHQRA 158 (251)
T ss_pred CCEEEEeCCceecHHHHHHHhCCE--EEEeCCCEecCcccccCCCCCchHH-------HHHHH--------HH--hHHHH
Confidence 999999999999999999999998 9999999997655443321110000 00101 11 22223
Q ss_pred HhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 236 TKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 236 ~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.+++-....++++||+++||||+|...++.
T Consensus 159 ~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (251)
T PRK06023 159 FALLALGEGFSAEAAQEAGLIWKIVDEEAV 188 (251)
T ss_pred HHHHHhCCCCCHHHHHHcCCcceeeCHHHH
Confidence 334434567899999999999999876543
No 55
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=1.7e-06 Score=78.96 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=95.9
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH------------H-------HHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP------------T-------LAIYD 149 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a------------g-------laIyd 149 (279)
+|.|+-+ ++.++...+...+..++.++..+.|+|.=+ |-|+++.. . ..+++
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (260)
T PRK05980 15 LLTLNRPEKLNALNYALIDRLLARLDAIEVDESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTA 94 (260)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 3455544 677888888888887776655565655332 23454421 0 12455
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 023631 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTG 229 (279)
Q Consensus 150 ~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG 229 (279)
.|..+++||++.+.|.|..+|.-|+++++- |++.++++|.+-....|.....-- ...+.+ ..
T Consensus 95 ~l~~~~kPvIaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~--------~v- 156 (260)
T PRK05980 95 RLEAFPKPVIAAVNGLAFGGGCEITEAVHL--AIASERALFAKPEIRLGMPPTFGG-------TQRLPR--------LA- 156 (260)
T ss_pred HHHhCCCCEEEEEcCEEEhhhhHHhHhCCE--EEecCCCEecCcccccCCCCCchH-------hhHHHh--------hc-
Confidence 677889999999999999999999999998 999999988764433332100000 011111 11
Q ss_pred CCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 230 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 230 ~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
......+++-....++++||+++||||+|...++
T Consensus 157 -G~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~ 190 (260)
T PRK05980 157 -GRKRALELLLTGDAFSAERALEIGLVNAVVPHEE 190 (260)
T ss_pred -CHHHHHHHHHcCCccCHHHHHHcCCCCcccCHHH
Confidence 2233344444456789999999999999987654
No 56
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=98.52 E-value=2.3e-06 Score=77.93 Aligned_cols=141 Identities=15% Similarity=0.167 Sum_probs=93.5
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhH----------------HHHHHHHHHhcCCCeEEEEccc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP----------------TLAIYDTMQSLKSPVGTHCVGF 165 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~a----------------glaIyd~i~~~~~pV~Tv~~G~ 165 (279)
++.++...+.+.+..++.++..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|.
T Consensus 25 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav~G~ 104 (257)
T PRK07658 25 LSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAIHGA 104 (257)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEEcCe
Confidence 67788888888888777655555555532 144565431 1235667888899999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|..+|.-++++++- |++.++++|.+-....|.....-- ...+-+. .| .....+++-....+
T Consensus 105 a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~~--------vG--~~~a~~l~l~g~~~ 165 (257)
T PRK07658 105 ALGGGLELAMSCHI--RFATESAKLGLPELNLGLIPGFAG-------TQRLPRY--------VG--KAKALEMMLTSEPI 165 (257)
T ss_pred eeeHHHHHHHhCCE--EEecCCCcccCcccccCCCCCCcH-------HHHHHHH--------hC--HHHHHHHHHcCCCc
Confidence 99999999999998 999999988754443332110000 0111111 12 22334444456678
Q ss_pred CHHHHHHcCCceeecCCCCc
Q 023631 246 GSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~~~ 265 (279)
+++||+++||||+|...++.
T Consensus 166 ~a~eA~~~Glv~~vv~~~~l 185 (257)
T PRK07658 166 TGAEALKWGLVNGVFPEETL 185 (257)
T ss_pred CHHHHHHcCCcCeecChhHH
Confidence 99999999999999876543
No 57
>PLN02600 enoyl-CoA hydratase
Probab=98.52 E-value=2.8e-06 Score=77.37 Aligned_cols=141 Identities=14% Similarity=0.130 Sum_probs=93.0
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhHH---------------HHHHHHHHhcCCCeEEEEccc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT---------------LAIYDTMQSLKSPVGTHCVGF 165 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~ag---------------laIyd~i~~~~~pV~Tv~~G~ 165 (279)
++.++.+.+.+.+..++.++..+.|+|.=. |.|+++..- ..++..|..+++||++.+.|.
T Consensus 19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~ 98 (251)
T PLN02600 19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA 98 (251)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence 678888888888888776655565555311 345555321 124556777899999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|..+|.-|++++|- |++.++++|.+-....|.. .+..- ...+.+. . ......+++-....|
T Consensus 99 a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~l~~~--------~--G~~~a~~l~ltg~~~ 159 (251)
T PLN02600 99 ALGGGLELALSCDL--RICGEEAVFGLPETGLAII---PGAGG----TQRLPRL--------V--GRSRAKELIFTGRRI 159 (251)
T ss_pred ecchhHHHHHhCCE--EEeeCCCEEeCcccccCcC---CCchH----HHHHHHH--------h--CHHHHHHHHHhCCcc
Confidence 99999999999998 9999999987643333211 01000 0111111 1 222234444345678
Q ss_pred CHHHHHHcCCceeecCCCCc
Q 023631 246 GSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~~~ 265 (279)
+++||+++||||+|...++.
T Consensus 160 ~a~eA~~~Glv~~vv~~~~~ 179 (251)
T PLN02600 160 GAREAASMGLVNYCVPAGEA 179 (251)
T ss_pred CHHHHHHcCCCcEeeChhHH
Confidence 99999999999999876553
No 58
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=98.50 E-value=2.4e-06 Score=77.99 Aligned_cols=138 Identities=17% Similarity=0.228 Sum_probs=91.9
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC-------CChhH---------------HHHHHHHHHhcCCCeEEEEc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG-------GsV~a---------------glaIyd~i~~~~~pV~Tv~~ 163 (279)
++.++...+.+.+..++.++..+.|+| .+.| +++.. ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~~~~~~~d~~v~~vvl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 105 (260)
T PRK05809 28 LNSETLKELDTVLDDIENDDNVYAVIL--TGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN 105 (260)
T ss_pred CCHHHHHHHHHHHHHHhcCCCcEEEEE--EcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677888888888887776555554444 3433 44321 12456678888999999999
Q ss_pred cccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCc
Q 023631 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIK 243 (279)
Q Consensus 164 G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~ 243 (279)
|.|..+|.-|+++++- |++.++++|.+.....|.... ..- ...+.+ .. ......+++-...
T Consensus 106 G~a~GgG~~lal~cD~--~va~~~a~f~~pe~~~Gl~p~---~g~----~~~l~~--------~v--G~~~a~~l~l~g~ 166 (260)
T PRK05809 106 GFALGGGCELSMACDI--RIASEKAKFGQPEVGLGITPG---FGG----TQRLAR--------IV--GPGKAKELIYTGD 166 (260)
T ss_pred CeeecHHHHHHHhCCE--EEeeCCCEEeCcccccCCCCC---ccH----HHHHHH--------Hh--CHHHHHHHHHhCC
Confidence 9999999999999998 999999998765544332111 000 011111 11 2223344444456
Q ss_pred eeCHHHHHHcCCceeecCCCC
Q 023631 244 RFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 244 ~lsa~EAleyGLID~I~~~~~ 264 (279)
.++++||+++||||+|...++
T Consensus 167 ~~~a~eA~~~Glv~~vv~~~~ 187 (260)
T PRK05809 167 MINAEEALRIGLVNKVVEPEK 187 (260)
T ss_pred CCCHHHHHHcCCCCcccChHH
Confidence 779999999999999987654
No 59
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.50 E-value=2.4e-06 Score=77.69 Aligned_cols=147 Identities=11% Similarity=0.009 Sum_probs=99.0
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------HHHHHHHHhcCCCe
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------LAIYDTMQSLKSPV 158 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------laIyd~i~~~~~pV 158 (279)
|.|+.+ ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++..- ..++..|...++||
T Consensus 18 i~ln~p~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 97 (249)
T PRK07110 18 VTMQDRVNKNAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPV 97 (249)
T ss_pred EEecCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCE
Confidence 555543 677888888888888776655565555311 345654321 25677788899999
Q ss_pred EEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhH
Q 023631 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKD 238 (279)
Q Consensus 159 ~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~ 238 (279)
++.+.|.|..+|..+++++|- |++.++++|.+.....|... +..- ...+.+. . ......++
T Consensus 98 Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l~~~--------~--g~~~a~~l 158 (249)
T PRK07110 98 IAAMQGHAIGGGLVLGLYADI--VVLSRESVYTANFMKYGFTP---GMGA----TAILPEK--------L--GLALGQEM 158 (249)
T ss_pred EEEecCceechHHHHHHhCCE--EEEeCCCEecCchhccCCCC---CchH----HHHHHHH--------h--CHHHHHHH
Confidence 999999999999999999998 99999998865444333211 1000 0111111 1 33344555
Q ss_pred hcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 239 LSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 239 ~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
+-...-|+++||+++||||+|.+.++.
T Consensus 159 lltg~~~~a~eA~~~Glv~~vv~~~~l 185 (249)
T PRK07110 159 LLTARYYRGAELKKRGVPFPVLPRAEV 185 (249)
T ss_pred HHcCCccCHHHHHHcCCCeEEeChHHH
Confidence 555677799999999999999976543
No 60
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=2.5e-06 Score=77.65 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=97.7
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhHH----------------HHHHHHHHhc
Q 023631 99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT----------------LAIYDTMQSL 154 (279)
Q Consensus 99 iIfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~ag----------------laIyd~i~~~ 154 (279)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.= =|-|+++..- ..+++.|..+
T Consensus 14 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 93 (249)
T PRK07938 14 EVTVDYPPVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYEC 93 (249)
T ss_pred EEEECCCCcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhC
Confidence 4555555 77788888888888777665555555531 1445665421 1245567788
Q ss_pred CCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 023631 155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEK 234 (279)
Q Consensus 155 ~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~ 234 (279)
++||++.+.|.|..+|.-|+++||- |++.++++|.+-....|..|.. ..+ .+.. ....
T Consensus 94 ~kPvIAav~G~a~GgG~~Lal~cD~--ria~~~a~f~~pe~~~G~~g~~----------~~l--------~~~v--g~~~ 151 (249)
T PRK07938 94 AVPVIAAVHGFCLGGGIGLVGNADV--IVASDDATFGLPEVDRGALGAA----------THL--------QRLV--PQHL 151 (249)
T ss_pred CCCEEEEEcCEEeehHHHHHHhCCE--EEEeCCCEeeCccceecCchhH----------HHH--------HHhc--CHHH
Confidence 9999999999999999999999998 9999999887644433322211 011 1111 2333
Q ss_pred HHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 235 ITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 235 I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
..+++-....++++||+++||||+|...++
T Consensus 152 a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 181 (249)
T PRK07938 152 MRALFFTAATITAAELHHFGSVEEVVPRDQ 181 (249)
T ss_pred HHHHHHhCCcCCHHHHHHCCCccEEeCHHH
Confidence 444544567889999999999999987554
No 61
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=98.49 E-value=2.4e-06 Score=78.15 Aligned_cols=145 Identities=17% Similarity=0.191 Sum_probs=94.9
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH----------------HHHHHHHHHh
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDTMQS 153 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a----------------glaIyd~i~~ 153 (279)
|.|+.+ ++.++.+.+.+.+..++.++..+.|+|.=. |.|+++.. ...+++.|..
T Consensus 16 itlnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 95 (259)
T TIGR01929 16 ITINRPQVRNAFRPLTVKEIIQALDDAREDPDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRT 95 (259)
T ss_pred EEecCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHh
Confidence 455544 677788888888877766554554444321 23444421 1235667888
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccC-CC-hhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQ-ADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~-a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
+++||++.+.|.|..+|.-|++++|- |++.++++|.+-....|.. +- ... .+-+. .|
T Consensus 96 ~~kPvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~G~~p~~~~~~---------~l~~~--------vG-- 154 (259)
T TIGR01929 96 CPKPVIAMVNGYAIGGGHVLHVVCDL--TIAAENARFGQTGPKVGSFDGGYGSS---------YLARI--------VG-- 154 (259)
T ss_pred CCCCEEEEEcCEEehHHHHHHHhCCE--EEecCCCEecCcccccccCCCccHHH---------HHHHH--------hH--
Confidence 89999999999999999999999998 9999999988766554421 11 111 11111 11
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.....+++-....++++||+++||||+|...++.
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (259)
T TIGR01929 155 QKKAREIWFLCRQYDAEQALDMGLVNTVVPLADL 188 (259)
T ss_pred HHHHHHHHHhCCccCHHHHHHcCCcccccCHHHH
Confidence 1223334434557899999999999999876543
No 62
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=98.49 E-value=3e-06 Score=77.33 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=95.7
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEE----EeCCCCChhHH----------------------HHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPT----------------------LAI 147 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~----INSPGGsV~ag----------------------laI 147 (279)
+|.|+.+ ++.++.+.+...+..++.++..+.|+|. .=|.|+++... ..+
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
T PRK07509 15 DVRLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRV 94 (262)
T ss_pred EEEecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHH
Confidence 4566654 6788889999998888766555555552 11445554321 113
Q ss_pred HHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023631 148 YDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRK 227 (279)
Q Consensus 148 yd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~ 227 (279)
+..|+.+++||++.+.|.|..+|.-|+++||- |++.++++|.+.....|.....-- ...+.+.
T Consensus 95 ~~~~~~~~kpvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~~-------- 157 (262)
T PRK07509 95 SLGWRRLPVPVIAALEGVCFGGGLQIALGADI--RIAAPDTKLSIMEAKWGLVPDMAG-------TVSLRGL-------- 157 (262)
T ss_pred HHHHHhCCCCEEEEECCeeecchHHHHHhCCE--EEecCCCEeecchhccCCCCCchH-------HHHHHHH--------
Confidence 34567889999999999999999999999998 999999998776554432111000 0111111
Q ss_pred hCCCHHHHHhHhcCCceeCHHHHHHcCCceeecC
Q 023631 228 TGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 261 (279)
Q Consensus 228 tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~ 261 (279)
. ......+++-....|+++||+++||||+|.+
T Consensus 158 ~--g~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~ 189 (262)
T PRK07509 158 V--RKDVARELTYTARVFSAEEALELGLVTHVSD 189 (262)
T ss_pred h--CHHHHHHHHHcCCCcCHHHHHHcCChhhhhc
Confidence 1 2333445554566789999999999999974
No 63
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=4.7e-06 Score=76.17 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=92.3
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhHHH----------HH--HHHHHhcCCCeEEEEccccch
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPTL----------AI--YDTMQSLKSPVGTHCVGFAYH 168 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~agl----------aI--yd~i~~~~~pV~Tv~~G~AAS 168 (279)
++.++...+.+.+..++.++..+.|+|.=+ |.|+++.... .+ +..+..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G 107 (259)
T PRK06494 28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG 107 (259)
T ss_pred CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence 677888888888888876665566555332 2356553210 11 122345689999999999999
Q ss_pred HHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHH
Q 023631 169 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQ 248 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~ 248 (279)
+|.-|+++++- |++.++++|.+.....|..-..-- ...+ .+.. ......+++-....++++
T Consensus 108 gG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l--------~~~v--g~~~a~~lll~g~~~~a~ 168 (259)
T PRK06494 108 GGFELALACDL--IVAAENATFALPEPRVGLAALAGG-------LHRL--------PRQI--GLKRAMGMILTGRRVTAR 168 (259)
T ss_pred HHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCchH-------HHHH--------HHHc--CHHHHHHHHHcCCcCCHH
Confidence 99999999998 999999998775554432111000 0111 1122 233344445456678999
Q ss_pred HHHHcCCceeecCCCC
Q 023631 249 EALEYGLIDRIIRPPR 264 (279)
Q Consensus 249 EAleyGLID~I~~~~~ 264 (279)
||+++||||+|....+
T Consensus 169 eA~~~GLv~~vv~~~~ 184 (259)
T PRK06494 169 EGLELGFVNEVVPAGE 184 (259)
T ss_pred HHHHcCCCcEecCHhH
Confidence 9999999999987654
No 64
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=98.48 E-value=2.8e-06 Score=79.23 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=95.8
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH--------------------------
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------------- 144 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------------- 144 (279)
|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++...
T Consensus 17 itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (296)
T PRK08260 17 ITLNRPDKLNAFTVTMARELIEAFDAADADDAVRAVIVTGAGRAFCAGADLSAGGNTFDLDAPRTPVEADEEDRADPSDD 96 (296)
T ss_pred EEeCCCcccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCeecCcChHHhhhcccccccccccccccccccchhHH
Confidence 555543 677888888888887776555554444211 344544321
Q ss_pred ------HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHH
Q 023631 145 ------LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRD 218 (279)
Q Consensus 145 ------laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~ 218 (279)
..++..|..+++||++.+.|.|..+|.-|+++||- |++.++++|.+.....|... +..- ...+.+
T Consensus 97 ~~~~~~~~~~~~l~~~pkPvIAav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~----~~~l~r 167 (296)
T PRK08260 97 GVRDGGGRVTLRIFDSLKPVIAAVNGPAVGVGATMTLAMDI--RLASTAARFGFVFGRRGIVP---EAAS----SWFLPR 167 (296)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEECCeeehHhHHHHHhCCE--EEeeCCCEEecchhhcCcCC---Ccch----hhhHHH
Confidence 12456678889999999999999999999999998 99999999977655443211 0000 001111
Q ss_pred HHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 219 YIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 219 ~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
. . ......+++-....++++||+++||||+|....+
T Consensus 168 ~--------v--G~~~A~~llltg~~~~a~eA~~~GLv~~vv~~~~ 203 (296)
T PRK08260 168 L--------V--GLQTALEWVYSGRVFDAQEALDGGLVRSVHPPDE 203 (296)
T ss_pred h--------h--CHHHHHHHHHcCCccCHHHHHHCCCceeecCHHH
Confidence 1 1 2233344554456689999999999999987654
No 65
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=98.48 E-value=4.5e-06 Score=76.14 Aligned_cols=144 Identities=11% Similarity=0.026 Sum_probs=97.0
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------HHHHHHHHhcCCCe
Q 023631 99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------LAIYDTMQSLKSPV 158 (279)
Q Consensus 99 iIfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------laIyd~i~~~~~pV 158 (279)
+|.|+.+ ++.++.+.+.+.+..++.++..+.|+|.=+ |.|+++... ..++..|..+++||
T Consensus 13 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 92 (251)
T TIGR03189 13 RLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPI 92 (251)
T ss_pred EEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence 3556665 788888999998888876665565555321 344554320 13455677889999
Q ss_pred EEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhH
Q 023631 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKD 238 (279)
Q Consensus 159 ~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~ 238 (279)
++.+.|.|..+|.-|+++||- |++.++++|.+-....|... ... .. .+ .+.. ......++
T Consensus 93 Iaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~~--~~---~l--------~~~v--g~~~a~~l 152 (251)
T TIGR03189 93 LVAVRGQCLGGGLEVAAAGNL--MFAAPDAKLGQPEIVLGVFA---PAA--SC---LL--------PERM--GRVAAEDL 152 (251)
T ss_pred EEEecCeeeeHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCC---Cch--HH---HH--------HHHh--CHHHHHHH
Confidence 999999999999999999998 99999998876444333211 100 00 11 1112 23334455
Q ss_pred hcCCceeCHHHHHHcCCceeecCC
Q 023631 239 LSRIKRFGSQEALEYGLIDRIIRP 262 (279)
Q Consensus 239 ~~rd~~lsa~EAleyGLID~I~~~ 262 (279)
+-....|+++||+++||||+|.+.
T Consensus 153 ~ltg~~~~a~eA~~~Glv~~v~~~ 176 (251)
T TIGR03189 153 LYSGRSIDGAEGARIGLANAVAED 176 (251)
T ss_pred HHcCCCCCHHHHHHCCCcceecCc
Confidence 545566899999999999999864
No 66
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=98.48 E-value=3.5e-06 Score=77.69 Aligned_cols=139 Identities=15% Similarity=0.161 Sum_probs=93.2
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH----------------HHHHHHHHHhcCCCeEEEEcc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a----------------glaIyd~i~~~~~pV~Tv~~G 164 (279)
++.++...+.+.+..++.++..+.|+|.=+ |.|+++.. ...+++.|..+++||++.+.|
T Consensus 37 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 116 (273)
T PRK07396 37 FRPKTVKEMIDAFADARDDDNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAMVAG 116 (273)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEEECC
Confidence 678888888888888776655565555321 34555431 012456778889999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCccccC-CChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCc
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIK 243 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~ 243 (279)
.|..+|.-|++++|- |++.++++|.+-.+..|.. +-. - ...+-+ ..| .....+++-...
T Consensus 117 ~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~-~-------~~~l~~--------~vG--~~~a~~l~ltg~ 176 (273)
T PRK07396 117 YAIGGGHVLHLVCDL--TIAADNAIFGQTGPKVGSFDGGY-G-------ASYLAR--------IVG--QKKAREIWFLCR 176 (273)
T ss_pred EEehHHHHHHHhCCE--EEeeCCcEEecccccccccCCch-H-------HHHHHH--------Hhh--HHHHHHHHHhCC
Confidence 999999999999998 9999999987655543321 110 0 001111 111 222344444456
Q ss_pred eeCHHHHHHcCCceeecCCCC
Q 023631 244 RFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 244 ~lsa~EAleyGLID~I~~~~~ 264 (279)
.|+|+||+++||||+|+...+
T Consensus 177 ~~~A~eA~~~GLv~~vv~~~~ 197 (273)
T PRK07396 177 QYDAQEALDMGLVNTVVPLAD 197 (273)
T ss_pred CcCHHHHHHcCCcCeecCHHH
Confidence 789999999999999987644
No 67
>PLN02921 naphthoate synthase
Probab=98.48 E-value=3.2e-06 Score=80.27 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=99.9
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhHH----------------HHHHHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT----------------LAIYDTMQ 152 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~ag----------------laIyd~i~ 152 (279)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.=+ |.||++..- ..++..|.
T Consensus 79 ~ItLnrP~~~Nal~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~ 158 (327)
T PLN02921 79 KITINRPERRNAFRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIR 158 (327)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHH
Confidence 4566654 788889999999888876655554444321 345655320 22456777
Q ss_pred hcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 023631 153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPF 232 (279)
Q Consensus 153 ~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~ 232 (279)
.+++||++.+.|.|..+|..|+++++- |++.++++|.+..+..|..... .. ...+- +.. ..
T Consensus 159 ~~~kPvIAaVnG~a~GGG~~LalacD~--riA~~~A~f~~pe~~~Gl~p~~--gg-----~~~L~--------rli--G~ 219 (327)
T PLN02921 159 RLPKPVIAMVAGYAVGGGHILHMVCDL--TIAADNAVFGQTGPKVGSFDAG--YG-----SSIMA--------RLV--GQ 219 (327)
T ss_pred hCCCCEEEEECCEEecHHHHHHHhCCE--EEEeCCCEEeCcccccCCCCCc--cH-----HHHHH--------HHh--CH
Confidence 889999999999999999999999998 9999999998776654421100 00 00111 111 23
Q ss_pred HHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 233 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 233 e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
....+++-....|+|+||+++||||+|...++.
T Consensus 220 ~~A~ellltG~~~~A~eA~~~GLV~~vv~~~~l 252 (327)
T PLN02921 220 KKAREMWFLARFYTASEALKMGLVNTVVPLDEL 252 (327)
T ss_pred HHHHHHHHcCCcCCHHHHHHCCCceEEeCHHHH
Confidence 334445545667899999999999999976543
No 68
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=4.3e-06 Score=76.55 Aligned_cols=141 Identities=16% Similarity=0.157 Sum_probs=90.1
Q ss_pred cCh-hHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH----------------------HHHHHHHHhcCCCe
Q 023631 106 IDE-EFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------------------LAIYDTMQSLKSPV 158 (279)
Q Consensus 106 I~~-~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag----------------------laIyd~i~~~~~pV 158 (279)
++. ++...+.+.+..++.++..+.|+|.=+ |.|+++..- ..+++.|..+++||
T Consensus 27 l~~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 106 (266)
T PRK09245 27 LSDNDAVDALVAACAAINADRSVRAVILTGAGTAFSSGGNVKDMRARVGAFGGSPADIRQGYRHGIQRIPLALYNLEVPV 106 (266)
T ss_pred CChHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCHHHHhhccccccccchhHHHHHHHHHHHHHHHHHcCCCCE
Confidence 553 667777777777776555555555321 344544211 12455677889999
Q ss_pred EEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhH
Q 023631 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKD 238 (279)
Q Consensus 159 ~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~ 238 (279)
++.+.|.|..+|.-|+++||- |++.++++|.+.....|.....-- ...+.+. .| .....++
T Consensus 107 Iaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~p~~g~-------~~~l~~~--------vG--~~~a~~l 167 (266)
T PRK09245 107 IAAVNGPAIGAGCDLACMCDI--RIASETARFAESFVKLGLIPGDGG-------AWLLPRI--------IG--MARAAEM 167 (266)
T ss_pred EEEECCEeecHHHHHHHhCCE--EEecCCCEEcccccccCcCCCcch-------hhhHHHH--------hh--HHHHHHH
Confidence 999999999999999999998 999999998765544432111000 0011111 11 1223334
Q ss_pred hcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 239 LSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 239 ~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
+-....|+++||+++||||+|....+.
T Consensus 168 ~l~g~~~~a~eA~~~Glv~~vv~~~~l 194 (266)
T PRK09245 168 AFTGDAIDAATALEWGLVSRVVPADQL 194 (266)
T ss_pred HHcCCCcCHHHHHHcCCcceecCHHHH
Confidence 434567899999999999999876543
No 69
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=98.47 E-value=4.1e-06 Score=75.97 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=93.1
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEE----EeCCCCChhH----------HHHHHHHHHhcCCCeE
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTP----------TLAIYDTMQSLKSPVG 159 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~----INSPGGsV~a----------glaIyd~i~~~~~pV~ 159 (279)
+|.|+-+ ++.++..++.+.+..++. +..+.|+|. .=|.|+++.. ...++..|..+++||+
T Consensus 12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~I 90 (243)
T PRK07854 12 TIELQRPERRNALNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVI 90 (243)
T ss_pred EEEeCCCccccCCCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence 4566543 788888888888887763 344444443 1144555532 1235667778899999
Q ss_pred EEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHh
Q 023631 160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDL 239 (279)
Q Consensus 160 Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~ 239 (279)
+.+.|.|..+|.-+++++|- |++.++++|.+-....|.. .+.. ....+ .+..| .....+++
T Consensus 91 aav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~---p~~g----~~~~l--------~~~~G--~~~a~~l~ 151 (243)
T PRK07854 91 AAINGPAIGAGLQLAMACDL--RVVAPEAYFQFPVAKYGIA---LDNW----TIRRL--------SSLVG--GGRARAML 151 (243)
T ss_pred EEecCcccccHHHHHHhCCE--EEEcCCCEEeccccccccC---CCcc----HHHHH--------HHHhC--HHHHHHHH
Confidence 99999999999999999998 9999999986533333211 0100 01111 11122 23334444
Q ss_pred cCCceeCHHHHHHcCCceeecC
Q 023631 240 SRIKRFGSQEALEYGLIDRIIR 261 (279)
Q Consensus 240 ~rd~~lsa~EAleyGLID~I~~ 261 (279)
-....|+++||+++||||+|..
T Consensus 152 ltg~~~~a~eA~~~Glv~~v~~ 173 (243)
T PRK07854 152 LGAEKLTAEQALATGMANRIGT 173 (243)
T ss_pred HcCCCcCHHHHHHCCCcccccC
Confidence 4566789999999999999954
No 70
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=98.46 E-value=3.6e-06 Score=77.62 Aligned_cols=145 Identities=14% Similarity=0.149 Sum_probs=94.3
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhHH-------------------------
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT------------------------- 144 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~ag------------------------- 144 (279)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.= =|-|+++..-
T Consensus 20 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (275)
T PLN02664 20 HLNLNRPSQRNALSLDFFTEFPKALSSLDQNPNVSVIILSGAGDHFCSGIDLKTLNSISEQSSSGDRGRSGERLRRKIKF 99 (275)
T ss_pred EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCceeeCcChHHhhhcccccccccchhhHHHHHHHHHH
Confidence 3555554 77888888888888777655555444421 1334544311
Q ss_pred -HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHH
Q 023631 145 -LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKE 223 (279)
Q Consensus 145 -laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ 223 (279)
..+++.|..+++||++.+.|.|..+|.-|+++++- |++.++++|.+-....|... +... ...+.+.
T Consensus 100 ~~~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l~~~---- 166 (275)
T PLN02664 100 LQDAITAIEQCRKPVIAAIHGACIGGGVDIVTACDI--RYCSEDAFFSVKEVDLAITA---DLGT----LQRLPSI---- 166 (275)
T ss_pred HHHHHHHHHhCCCCEEEEECCccccchHHHHHhCCE--EEecCCCEeccHHHhhCCCC---CccH----HHHHHHH----
Confidence 13456678889999999999999999999999998 99999999876444333211 1000 1111111
Q ss_pred HHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCC
Q 023631 224 LSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 262 (279)
Q Consensus 224 ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~ 262 (279)
. ......+++-....|+++||+++||||+|...
T Consensus 167 ----v--G~~~A~~l~ltg~~~~a~eA~~~GLv~~vv~~ 199 (275)
T PLN02664 167 ----V--GYGNAMELALTGRRFSGSEAKELGLVSRVFGS 199 (275)
T ss_pred ----h--CHHHHHHHHHhCCCCCHHHHHHcCCCceeeCC
Confidence 1 22223444434567799999999999999874
No 71
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=98.46 E-value=4e-06 Score=76.44 Aligned_cols=139 Identities=12% Similarity=0.097 Sum_probs=91.7
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH-------------H-----HHHHHHHHhcCCCeEEEEc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------T-----LAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a-------------g-----laIyd~i~~~~~pV~Tv~~ 163 (279)
++.++..++.+.+..++.++ .+.|+|.=+ |.|+++.. . ..+++.|..+++||++.+.
T Consensus 23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 101 (256)
T TIGR02280 23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN 101 (256)
T ss_pred CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 67788888898888887655 666665321 33444321 0 1234567888999999999
Q ss_pred cccchHHHHHHcCCCCCcEEEccCceEEEecCcccc-CCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCC
Q 023631 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI 242 (279)
Q Consensus 164 G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~-~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd 242 (279)
|.|..+|.-|++++|- |++.++++|.+-....|. .+-.. ...+.+ .. ......+++-..
T Consensus 102 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~lG~~p~~g~--------~~~l~~--------~v--G~~~a~~l~l~g 161 (256)
T TIGR02280 102 GVAAGAGANLALACDI--VLAAESARFIQAFAKIGLIPDSGG--------TWSLPR--------LV--GRARAMGLAMLG 161 (256)
T ss_pred CeeehHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCccH--------HHHHHH--------Hh--CHHHHHHHHHcC
Confidence 9999999999999998 999999998754433321 11000 001111 11 122233444445
Q ss_pred ceeCHHHHHHcCCceeecCCCCc
Q 023631 243 KRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 243 ~~lsa~EAleyGLID~I~~~~~~ 265 (279)
..|+++||+++||||+|...++.
T Consensus 162 ~~~~a~eA~~~Glv~~vv~~~~l 184 (256)
T TIGR02280 162 EKLDARTAASWGLIWQVVDDAAL 184 (256)
T ss_pred CCCCHHHHHHcCCcceeeChHHH
Confidence 67899999999999999876543
No 72
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=98.46 E-value=1.7e-06 Score=84.05 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=91.2
Q ss_pred ccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhH-------HHHHHHHH---HhcCCCeEEEEccccchHHHH
Q 023631 103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGFAYHLAGF 172 (279)
Q Consensus 103 ~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~a-------glaIyd~i---~~~~~pV~Tv~~G~AAS~asl 172 (279)
.|-++++-+......+...+.. .-||+-+|||||..+.. +.+|...+ -..+.|+++++.|-++|+|++
T Consensus 199 fG~~~peGyRKAlR~mklAekf--~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAl 276 (431)
T PLN03230 199 FAMPQPNGYRKALRFMRHAEKF--GFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGAL 276 (431)
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHH
Confidence 3667787777777766554433 57999999999976422 23455544 456689999999999999999
Q ss_pred HHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHH
Q 023631 173 LLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALE 252 (279)
Q Consensus 173 Il~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAle 252 (279)
.+.+|+. .+|.|++.+.+-.|.+.. .+.++ +. .. .++..+ ..-+||+++++
T Consensus 277 alg~aD~--VlMle~A~ysVisPEgaA-------sILwk------d~---------~~-A~eAAe----alkitA~dL~~ 327 (431)
T PLN03230 277 AIGCGNR--MLMMENAVYYVASPEACA-------AILWK------SA---------AA-APKAAE----ALRITAAELVK 327 (431)
T ss_pred HhhcCCE--EEEecCCEEEecCHHHHH-------HHHhc------cc---------cc-hHHHHH----HcCCCHHHHHh
Confidence 9999987 999999999887775420 00000 00 00 111111 23679999999
Q ss_pred cCCceeecCCCC
Q 023631 253 YGLIDRIIRPPR 264 (279)
Q Consensus 253 yGLID~I~~~~~ 264 (279)
.|+||+|+..+.
T Consensus 328 ~GiID~II~Ep~ 339 (431)
T PLN03230 328 LGVVDEIVPEPL 339 (431)
T ss_pred CCCCeEeccCCC
Confidence 999999998653
No 73
>PLN02888 enoyl-CoA hydratase
Probab=98.46 E-value=4.6e-06 Score=76.62 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=95.7
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------HHHHHHHHhcCCCe
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------LAIYDTMQSLKSPV 158 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------laIyd~i~~~~~pV 158 (279)
|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++... ..++..|..+++||
T Consensus 23 itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPv 102 (265)
T PLN02888 23 ITINRPKALNALTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPI 102 (265)
T ss_pred EEEcCCCcccCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCE
Confidence 555554 778888888888888876655565555311 334555321 23455677889999
Q ss_pred EEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhH
Q 023631 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKD 238 (279)
Q Consensus 159 ~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~ 238 (279)
++.+.|.|..+|..|++++|- |++.++++|.+-....|.. .+..- ...+.+. . ......++
T Consensus 103 Iaav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~~~l~~~--------v--G~~~a~~l 163 (265)
T PLN02888 103 IGAINGFAITAGFEIALACDI--LVASRGAKFIDTHAKFGIF---PSWGL----SQKLSRI--------I--GANRAREV 163 (265)
T ss_pred EEEECCeeechHHHHHHhCCE--EEecCCCEecCccccccCC---CCccH----hhHHHHH--------h--CHHHHHHH
Confidence 999999999999999999998 9999999886543333221 01000 0111111 1 22233344
Q ss_pred hcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 239 LSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 239 ~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
+-....|+++||+++||||+|....+.
T Consensus 164 ~ltg~~~~a~eA~~~Glv~~vv~~~~l 190 (265)
T PLN02888 164 SLTAMPLTAETAERWGLVNHVVEESEL 190 (265)
T ss_pred HHhCCccCHHHHHHcCCccEeeChHHH
Confidence 434567799999999999999976543
No 74
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=98.45 E-value=3.2e-06 Score=77.83 Aligned_cols=137 Identities=21% Similarity=0.221 Sum_probs=96.5
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhH-------HHHHHHHHH---hcCCCeEEEEccc
Q 023631 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTMQ---SLKSPVGTHCVGF 165 (279)
Q Consensus 96 ~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~a-------glaIyd~i~---~~~~pV~Tv~~G~ 165 (279)
++++...+|-++++........+...+.. .-||+-.+||||..+.. +..+...+. ..+.|++++++|-
T Consensus 69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~~--~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~ 146 (256)
T PRK12319 69 QDNLKRNFGQPHPEGYRKALRLMKQAEKF--GRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE 146 (256)
T ss_pred ccceeeeCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45566677889998888877766544332 57999999999987422 234554444 4468999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|+|+|++.++.++. .+|.|++.+.+-.|.+.. . +.. ++ ....++..+.+ -+
T Consensus 147 ~~gGgA~a~~~~D~--v~m~~~a~~~v~~pe~~a-----~-------il~-~~----------~~~a~~aa~~~----~~ 197 (256)
T PRK12319 147 GGSGGALALAVADQ--VWMLENTMYAVLSPEGFA-----S-------ILW-KD----------GSRATEAAELM----KI 197 (256)
T ss_pred cCcHHHHHhhcCCE--EEEecCceEEEcCHHHHH-----H-------HHh-cC----------cccHHHHHHHc----CC
Confidence 99999999999987 999999999887775420 0 110 00 01112222222 34
Q ss_pred CHHHHHHcCCceeecCCC
Q 023631 246 GSQEALEYGLIDRIIRPP 263 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~ 263 (279)
|+.++.+.|+||+|+..+
T Consensus 198 ~a~~l~~~g~iD~ii~e~ 215 (256)
T PRK12319 198 TAGELLEMGVVDKVIPEH 215 (256)
T ss_pred CHHHHHHCCCCcEecCCC
Confidence 999999999999999875
No 75
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=4e-06 Score=77.03 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=94.1
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH-----------------HHHHHHHHh
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-----------------LAIYDTMQS 153 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag-----------------laIyd~i~~ 153 (279)
|.|+.+ ++.++...+.+.+..++.++..+.|+|.=. |.|+++... ..++..|..
T Consensus 25 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (268)
T PRK07327 25 IVLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVIN 104 (268)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHc
Confidence 455544 678888888888888877665565555311 344544311 123455667
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccC-CChhhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPF 232 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~ 232 (279)
+++||++.+.|.|..+|.-|+++|+- |++.++++|.+-....|.. +.... ..+-.. . ..
T Consensus 105 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~~--------~~l~~~--------v--G~ 164 (268)
T PRK07327 105 CDKPIVSAIHGPAVGAGLVAALLADI--SIAAKDARIIDGHTRLGVAAGDHAA--------IVWPLL--------C--GM 164 (268)
T ss_pred CCCCEEEEEcCeeeehhhHHHHhCCE--EEecCCCEEeCcccccCCCCCcchh--------hHHHHH--------h--CH
Confidence 88999999999999999999999998 9999999987543333321 11000 001111 1 11
Q ss_pred HHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 233 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 233 e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
....+++-....|+|+||+++||||+|...++.
T Consensus 165 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 197 (268)
T PRK07327 165 AKAKYYLLLCEPVSGEEAERIGLVSLAVDDDEL 197 (268)
T ss_pred HHHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence 223334434567899999999999999876543
No 76
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=98.45 E-value=2.1e-06 Score=81.13 Aligned_cols=138 Identities=22% Similarity=0.258 Sum_probs=98.1
Q ss_pred hcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhH-------HHHHHH---HHHhcCCCeEEEEcc
Q 023631 95 YRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYD---TMQSLKSPVGTHCVG 164 (279)
Q Consensus 95 ~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~a-------glaIyd---~i~~~~~pV~Tv~~G 164 (279)
.++++-..+|-++++.+......+...+.- .-||+-.+||||..+.. +.+|.. ++-..+.|+++++.|
T Consensus 121 ~~e~~~~~~G~~~peg~rKa~R~m~lA~~f--~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG 198 (319)
T PRK05724 121 TKEKIRRNFGMPRPEGYRKALRLMKMAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG 198 (319)
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 356666778889998888877766654432 57999999999976421 224444 444667999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
-+.|+|++.+..++. .+|.|++.+.+-.|.+. ..+.. ++ .+..++..+ ...
T Consensus 199 eg~sGGAla~~~aD~--v~m~~~A~~svisPEg~------------a~Il~-~~-------------~~~a~~aae-~~~ 249 (319)
T PRK05724 199 EGGSGGALAIGVGDR--VLMLEYSTYSVISPEGC------------ASILW-KD-------------ASKAPEAAE-AMK 249 (319)
T ss_pred CccHHHHHHHhccCe--eeeecCceEeecCHHHH------------HHHHh-cC-------------chhHHHHHH-HcC
Confidence 999999999998987 99999999988777542 00110 00 011122222 344
Q ss_pred eCHHHHHHcCCceeecCCC
Q 023631 245 FGSQEALEYGLIDRIIRPP 263 (279)
Q Consensus 245 lsa~EAleyGLID~I~~~~ 263 (279)
+|+.++++.|+||+|+..+
T Consensus 250 ita~~l~~~g~iD~II~Ep 268 (319)
T PRK05724 250 ITAQDLKELGIIDEIIPEP 268 (319)
T ss_pred CCHHHHHHCCCceEeccCC
Confidence 7999999999999999765
No 77
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=98.45 E-value=5e-06 Score=76.18 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=93.0
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH----------------HHHHHHHHHhcCCCeEEEEcc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a----------------glaIyd~i~~~~~pV~Tv~~G 164 (279)
++.++...+...+..++.++..+.|+|.=+ |.|+++.. ...++..|..+++||++.+.|
T Consensus 32 l~~~~~~~l~~~l~~~~~d~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 111 (262)
T PRK06144 32 MTWAMYEGLAEICEAIAADPSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAAIAG 111 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677888888888888776555565555421 33555432 112445667888999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCc-cccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCc
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIK 243 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~-~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~ 243 (279)
.|..+|.-+++++|- |++.++++|.+-... .|. ..... ....+ .+..| .....+++-...
T Consensus 112 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~~G~---~p~~g----~~~~l--------~~~vG--~~~a~~l~l~g~ 172 (262)
T PRK06144 112 ACVGGGAAIAAACDL--RIATPSARFGFPIARTLGN---CLSMS----NLARL--------VALLG--AARVKDMLFTAR 172 (262)
T ss_pred eeeehHHHHHHhCCE--EEecCCCEeechhHHhccC---CCCcc----HHHHH--------HHHhC--HHHHHHHHHcCC
Confidence 999999999999998 999999998653321 221 10100 01111 11222 333445554567
Q ss_pred eeCHHHHHHcCCceeecCCCCc
Q 023631 244 RFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 244 ~lsa~EAleyGLID~I~~~~~~ 265 (279)
.++++||+++||||+|...++.
T Consensus 173 ~~~a~eA~~~Glv~~vv~~~~l 194 (262)
T PRK06144 173 LLEAEEALAAGLVNEVVEDAAL 194 (262)
T ss_pred CcCHHHHHHcCCcCeecCHHHH
Confidence 7899999999999999876543
No 78
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=98.45 E-value=3.1e-06 Score=78.42 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=98.5
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEE------eCCCCChhHH-----------------HHHHHHH
Q 023631 99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYI------NGPGGDVTPT-----------------LAIYDTM 151 (279)
Q Consensus 99 iIfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I------NSPGGsV~ag-----------------laIyd~i 151 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.= =|.|+++..- ..++..|
T Consensus 24 ~itlnr~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l 103 (278)
T PLN03214 24 VVWLAKEPVNSMTLAMWRSLDDALTALENDPTVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRL 103 (278)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHH
Confidence 3556543 77788889999888887666556555532 1445554321 1144567
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
..+++||++.+.|.|..+|.-|++++|. |++.++++|.+-....|.. ..+... .. .+.+.. .
T Consensus 104 ~~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~lGl~--~p~~~~----~~--------~l~~~~--G 165 (278)
T PLN03214 104 LRSRLATVCAIRGACPAGGCAVSLCCDY--RLQTTEGTMGLNEVALGIP--VPKFWA----RL--------FMGRVI--D 165 (278)
T ss_pred HcCCCCEEEEEcCcccchHHHHHHhCCE--EEecCCCEecCcHHHhCCC--CCChhH----HH--------HHHHhc--C
Confidence 7888999999999999999999999998 9999999987644433321 011000 00 111222 2
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.....+++-...-|+++||+++||||+|...++.
T Consensus 166 ~~~a~~llltg~~~~a~eA~~~Glv~~vv~~~~l 199 (278)
T PLN03214 166 RKVAESLLLRGRLVRPAEAKQLGLIDEVVPAAAL 199 (278)
T ss_pred HHHHHHHHHcCCccCHHHHHHcCCCcEecChHHH
Confidence 3444555555667899999999999999876543
No 79
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=5.5e-06 Score=76.20 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=98.1
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhHH-----------------HHHHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT-----------------LAIYDTM 151 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~ag-----------------laIyd~i 151 (279)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++..- ..+++.|
T Consensus 23 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (269)
T PRK06127 23 RITFNNPARHNAMSLDMWEALPQALAAAEDDDAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAAL 102 (269)
T ss_pred EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHH
Confidence 3556654 778888899998888877655555554322 124554310 1244667
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
..+++||++.+.|.|..+|.-|+++++- |++.++++|.+.....|.....-- ...+.+. . .
T Consensus 103 ~~~~kPvIaav~G~a~GgG~~LalacD~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l~~~--------v--G 163 (269)
T PRK06127 103 ADYAKPTIACIRGYCIGGGMGIALACDI--RIAAEDSRFGIPAARLGLGYGYDG-------VKNLVDL--------V--G 163 (269)
T ss_pred HhCCCCEEEEECCEEecHHHHHHHhCCE--EEeeCCCEeeCchhhhCCCCCccH-------HHHHHHH--------h--C
Confidence 7889999999999999999999999998 999999999876655442111000 0111111 1 2
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
.....+++-....++++||+++||||+|....+
T Consensus 164 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~ 196 (269)
T PRK06127 164 PSAAKDLFYTARRFDAAEALRIGLVHRVTAADD 196 (269)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCCCEeeCHHH
Confidence 233444554566789999999999999997654
No 80
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=98.44 E-value=3.8e-06 Score=76.89 Aligned_cols=139 Identities=14% Similarity=0.151 Sum_probs=93.0
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------------HHHHHHHHhcCCCeEEEEc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------LAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------------laIyd~i~~~~~pV~Tv~~ 163 (279)
++.++...+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.|+.+++||++.+.
T Consensus 29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 108 (262)
T PRK07468 29 LSARMIAELTTAARRLAADAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIGRIQ 108 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 677788888888877766554555555422 334554310 1256778889999999999
Q ss_pred cccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCc
Q 023631 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIK 243 (279)
Q Consensus 164 G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~ 243 (279)
|.|..+|.-|++++|- |++.++++|.+-....|... +..- ..+ ..+ .......+++-...
T Consensus 109 G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p---~~g~--~~~-----------~~~--vG~~~a~~lll~g~ 168 (262)
T PRK07468 109 GQAFGGGVGLISVCDV--AIAVSGARFGLTETRLGLIP---ATIS--PYV-----------VAR--MGEANARRVFMSAR 168 (262)
T ss_pred CEEEhHHHHHHHhCCE--EEEeCCCEEeCchhccCCCc---ccch--hhH-----------Hhh--ccHHHHHHHHHhCC
Confidence 9999999999999998 99999998866444433211 0000 000 011 22333445554567
Q ss_pred eeCHHHHHHcCCceeecCCCC
Q 023631 244 RFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 244 ~lsa~EAleyGLID~I~~~~~ 264 (279)
-++++||+++||||+|...++
T Consensus 169 ~~~a~eA~~~Glv~~v~~~~~ 189 (262)
T PRK07468 169 LFDAEEAVRLGLLSRVVPAER 189 (262)
T ss_pred ccCHHHHHHcCCcceecCHHH
Confidence 779999999999999987654
No 81
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=98.44 E-value=4.7e-06 Score=78.71 Aligned_cols=138 Identities=22% Similarity=0.208 Sum_probs=97.6
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhH-------HHHHHHHH---HhcCCCeEEEEccc
Q 023631 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP-------TLAIYDTM---QSLKSPVGTHCVGF 165 (279)
Q Consensus 96 ~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~a-------glaIyd~i---~~~~~pV~Tv~~G~ 165 (279)
++++-...|.++++.+......+...+.- .-||+.++||||..+.. +.+|...+ -....|+++++.|-
T Consensus 122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~f--~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe 199 (316)
T TIGR00513 122 KEKLRRNFGMPAPEGYRKALRLMKMAERF--KMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE 199 (316)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence 56666677889998888877766544433 57999999999987322 33455544 45578999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|+|+|++.+..++. .+|.|++.+.+-.|.+.. . +..+ +. ...++..+. .-+
T Consensus 200 ggsGGAla~~~aD~--v~m~~~a~~sVisPEg~a-----~--Il~k------d~----------~~a~~aae~----~~~ 250 (316)
T TIGR00513 200 GGSGGALAIGVGDK--VNMLEYSTYSVISPEGCA-----A--ILWK------DA----------SKAPKAAEA----MKI 250 (316)
T ss_pred cccHHHhhhccCCE--EEEecCceEEecCHHHHH-----H--Hhcc------ch----------hhHHHHHHH----ccC
Confidence 99999998888887 999999999888776520 0 0000 00 001111221 345
Q ss_pred CHHHHHHcCCceeecCCCC
Q 023631 246 GSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~~ 264 (279)
||.++++.|+||+|+..+.
T Consensus 251 ta~~l~~~G~iD~II~ep~ 269 (316)
T TIGR00513 251 TAPDLKELGLIDSIIPEPL 269 (316)
T ss_pred CHHHHHHCCCCeEeccCCC
Confidence 8999999999999998663
No 82
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=6.9e-06 Score=75.04 Aligned_cols=140 Identities=12% Similarity=0.088 Sum_probs=92.6
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhHH-------------------HHHHHHHHhcCCCeEEEE
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPT-------------------LAIYDTMQSLKSPVGTHC 162 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~ag-------------------laIyd~i~~~~~pV~Tv~ 162 (279)
++.++.+.+.+.+..++ ++..+.|+|.= =|.|+++..- ..++..|..+++||++.+
T Consensus 28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav 106 (262)
T PRK08140 28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV 106 (262)
T ss_pred CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 67788888888888887 66566565532 1344554320 124567778899999999
Q ss_pred ccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCC
Q 023631 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI 242 (279)
Q Consensus 163 ~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd 242 (279)
.|.|..+|.-|++++|- |++.++++|.+-....|.. .+..- ...+.+. . ......+++-..
T Consensus 107 ~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~G~~---p~~g~----~~~l~~~--------v--G~~~a~~l~l~g 167 (262)
T PRK08140 107 NGVAAGAGANLALACDI--VLAARSASFIQAFVKIGLV---PDSGG----TWFLPRL--------V--GMARALGLALLG 167 (262)
T ss_pred CCeeehhHHHHHHhCCE--EEecCCCEEeccccccCCC---CCccH----HHHHHHH--------h--CHHHHHHHHHcC
Confidence 99999999999999998 9999999987543333211 01000 0011111 1 222334444445
Q ss_pred ceeCHHHHHHcCCceeecCCCCc
Q 023631 243 KRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 243 ~~lsa~EAleyGLID~I~~~~~~ 265 (279)
..|+++||+++||||+|...++.
T Consensus 168 ~~~~a~eA~~~Glv~~vv~~~~l 190 (262)
T PRK08140 168 EKLSAEQAEQWGLIWRVVDDAAL 190 (262)
T ss_pred CCcCHHHHHHcCCccEeeChHHH
Confidence 66899999999999999876543
No 83
>PRK08139 enoyl-CoA hydratase; Validated
Probab=98.43 E-value=7.4e-06 Score=75.28 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=96.3
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH----------------HHHHHHHHh
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------------LAIYDTMQS 153 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag----------------laIyd~i~~ 153 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.|..
T Consensus 23 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (266)
T PRK08139 23 TLTLNRPQAFNALSEAMLAALQAALDAIAADPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVA 102 (266)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHh
Confidence 3555544 677888888888887776554454444211 233444210 124556778
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 233 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e 233 (279)
+++||++.+.|.|..+|.-+++++|- |++.++++|.+-....|......- . .+. +..| ..
T Consensus 103 ~~kPvIAav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~~~----~-~l~-----------r~vG--~~ 162 (266)
T PRK08139 103 LPQPVIARVHGIATAAGCQLVASCDL--AVAADTARFAVPGVNIGLFCSTPM----V-ALS-----------RNVP--RK 162 (266)
T ss_pred CCCCEEEEECceeeHHHHHHHHhCCE--EEEeCCCEEeCcccCcCCCCCccH----H-HHH-----------HHhC--HH
Confidence 89999999999999999999999998 999999998765554443211100 0 011 1122 23
Q ss_pred HHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 234 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 234 ~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
...+++-....++++||+++||||+|....+.
T Consensus 163 ~A~~l~ltg~~~~a~eA~~~GLv~~vv~~~~l 194 (266)
T PRK08139 163 QAMEMLLTGEFIDAATAREWGLVNRVVPADAL 194 (266)
T ss_pred HHHHHHHcCCccCHHHHHHcCCccEeeChhHH
Confidence 33444444567799999999999999976543
No 84
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=4.9e-06 Score=75.84 Aligned_cols=145 Identities=15% Similarity=0.191 Sum_probs=93.9
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC------CChhH-------------------HHHHHH
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP-------------------TLAIYD 149 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG------GsV~a-------------------glaIyd 149 (279)
|.|+.+ ++.++...+.+.+..++.++..+.|+| .+-| +++.. ...++.
T Consensus 15 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (255)
T PRK07260 15 LTLNRPEVSNGFNIPMCQEILEALRLAEEDPSVRFLLI--NANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISF 92 (255)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHH
Confidence 555543 677888888888887776554454444 3433 44321 123445
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 023631 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTG 229 (279)
Q Consensus 150 ~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG 229 (279)
.|..+++||++.+.|.|..+|.-|++++|- |++.++++|.+-....|... +..- ...+.+ ..
T Consensus 93 ~l~~~~kPvIaav~G~a~GgG~~lala~D~--ria~~~a~f~~pe~~~Gl~p---~~g~----~~~l~~--------~v- 154 (255)
T PRK07260 93 AIKQLPKPVIMCVDGAVAGAAANMAVAADF--CIASTKTKFIQAFVGVGLAP---DAGG----LFLLTR--------AI- 154 (255)
T ss_pred HHHcCCCCEEEEecCeeehhhHHHHHhCCE--EEEeCCCEEechHhhcCCCC---CCch----hhhhHH--------hh-
Confidence 677889999999999999999999999998 99999999875332222110 0000 001111 11
Q ss_pred CCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 230 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 230 ~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
......+++-....++|+||+++||||+|.+.++.
T Consensus 155 -g~~~a~~l~l~g~~~sa~eA~~~Glv~~vv~~~~l 189 (255)
T PRK07260 155 -GLNRATHLAMTGEALTAEKALEYGFVYRVAESEKL 189 (255)
T ss_pred -CHHHHHHHHHhCCccCHHHHHHcCCcceecCHhHH
Confidence 22334445545667899999999999999876543
No 85
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=98.43 E-value=6.3e-06 Score=75.31 Aligned_cols=146 Identities=17% Similarity=0.207 Sum_probs=95.7
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC-------CChhH---------------HHHHHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG-------GDVTP---------------TLAIYDTM 151 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG-------GsV~a---------------glaIyd~i 151 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+| .+-| +++.. ...+++.|
T Consensus 16 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl--~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l 93 (260)
T PRK07657 16 KITLNRPRAANALSLALLEELQNILTQINEEANVRVVIL--TGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMV 93 (260)
T ss_pred EEEEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEE--ecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHH
Confidence 3555554 788888899998888876554454444 3333 44321 02355677
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
..+++||++.+.|.|..+|.-|++++|- |++.++++|.+-....|.....-- ...+.+. .|
T Consensus 94 ~~~~kPvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~G~~p~~g~-------~~~l~~~--------vG-- 154 (260)
T PRK07657 94 EQLPQPVIAAINGIALGGGLELALACDF--RIAAESASLGLTETTLAIIPGAGG-------TQRLPRL--------IG-- 154 (260)
T ss_pred HhCCCCEEEEEcCEeechHHHHHHhCCE--EEeeCCCEEcCchhccCcCCCccH-------HHHHHHH--------hC--
Confidence 7889999999999999999999999998 999999988765544432111000 0011111 11
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.....+++-....|+++||+++||||+|...++.
T Consensus 155 ~~~a~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 188 (260)
T PRK07657 155 VGRAKELIYTGRRISAQEAKEIGLVEFVVPAHLL 188 (260)
T ss_pred HHHHHHHHHhCCCCCHHHHHHcCCCCeecCHHHH
Confidence 2223344434556899999999999999876553
No 86
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=6.2e-06 Score=75.84 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=94.3
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH--------------------------H
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP--------------------------T 144 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a--------------------------g 144 (279)
|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++.. .
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (272)
T PRK06142 19 VTLNRPGKGNAMNPAFWSELPEIFRWLDADPEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRL 98 (272)
T ss_pred EEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHH
Confidence 556655 788888999998888876555555555321 23354432 1
Q ss_pred HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHH
Q 023631 145 LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKEL 224 (279)
Q Consensus 145 laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~y 224 (279)
..+++.|..+++||++.+.|.|..+|.-|+++||- |++.++++|.+.....|..- +..- ...+-+
T Consensus 99 ~~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p---~~g~----~~~l~~------ 163 (272)
T PRK06142 99 QAAINAVADCRKPVIAAVQGWCIGGGVDLISACDM--RYASADAKFSVREVDLGMVA---DVGS----LQRLPR------ 163 (272)
T ss_pred HHHHHHHHhCCCCEEEEecCccccchHHHHHhCCE--EEecCCCeecchhhhhCCCC---CchH----HHHHHH------
Confidence 23455677889999999999999999999999998 99999998866544433210 0000 011111
Q ss_pred HHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCC
Q 023631 225 SRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRP 262 (279)
Q Consensus 225 a~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~ 262 (279)
..| .....+++-....++++||+++||||+|..+
T Consensus 164 --~~G--~~~a~~l~l~g~~~~a~eA~~~GLv~~vv~~ 197 (272)
T PRK06142 164 --IIG--DGHLRELALTGRDIDAAEAEKIGLVNRVYDD 197 (272)
T ss_pred --HhC--HHHHHHHHHhCCCcCHHHHHHcCCccEecCC
Confidence 111 2223344434556799999999999999975
No 87
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=5.8e-06 Score=75.43 Aligned_cols=141 Identities=13% Similarity=0.181 Sum_probs=91.7
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH-------------HHHHHHHHHhcCCCeEEEEccccch
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------TLAIYDTMQSLKSPVGTHCVGFAYH 168 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a-------------glaIyd~i~~~~~pV~Tv~~G~AAS 168 (279)
++.++...+.+.+..++.++..+.|+|.=+ |-|+++.. ...++..|..+++||++.+.|.|..
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~a~G 107 (257)
T PRK05862 28 LNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGYALG 107 (257)
T ss_pred CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEeH
Confidence 677788888888887776555555555421 23444321 1234567788899999999999999
Q ss_pred HHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHH
Q 023631 169 LAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQ 248 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~ 248 (279)
+|.-+++++|- |++.++++|.+-....|.. .+..- ...+. +..| .....+++-....++++
T Consensus 108 gG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g~----~~~l~--------~~vG--~~~a~~l~l~g~~~~a~ 168 (257)
T PRK05862 108 GGCELAMMCDI--IIAADTAKFGQPEIKLGVL---PGMGG----SQRLT--------RAVG--KAKAMDLCLTGRMMDAA 168 (257)
T ss_pred HHHHHHHHCCE--EEEeCCCEEeCchhccCcC---CCccH----HHHHH--------HHhC--HHHHHHHHHhCCccCHH
Confidence 99999999998 9999999887644333321 00000 00111 1112 22234444445678999
Q ss_pred HHHHcCCceeecCCCCc
Q 023631 249 EALEYGLIDRIIRPPRI 265 (279)
Q Consensus 249 EAleyGLID~I~~~~~~ 265 (279)
||+++||||+|...++.
T Consensus 169 eA~~~Glv~~vv~~~~l 185 (257)
T PRK05862 169 EAERAGLVSRVVPADKL 185 (257)
T ss_pred HHHHcCCCCEeeCHhHH
Confidence 99999999999876543
No 88
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=98.42 E-value=4e-06 Score=77.37 Aligned_cols=148 Identities=13% Similarity=0.110 Sum_probs=95.0
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH----------------------HHHH
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------------------LAIY 148 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag----------------------laIy 148 (279)
|.|+-+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++... ..++
T Consensus 23 itlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (276)
T PRK05864 23 ITLNRPERMNSMAFDVMVPLKEALAEVSYDNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVI 102 (276)
T ss_pred EEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHH
Confidence 555554 777888888888887776555555555321 445554321 1244
Q ss_pred HHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHh
Q 023631 149 DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT 228 (279)
Q Consensus 149 d~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~t 228 (279)
+.|..+++||++.+.|.|..+|.-|+++|+- |++.++++|.+-....|... .+... ...+ .+..
T Consensus 103 ~~l~~~~kPvIaav~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~~Gl~p--~~~g~----~~~l--------~~~v 166 (276)
T PRK05864 103 LALRRLHQPVIAAVNGPAIGGGLCLALAADI--RVASSSAYFRAAGINNGLTA--SELGL----SYLL--------PRAI 166 (276)
T ss_pred HHHHhCCCCEEEEECCEeehhHHHHHHhCCE--EEeeCCCEecCcccccCCCC--CCcch----heeh--------Hhhh
Confidence 5677889999999999999999999999998 99999998875444333210 00000 0001 1112
Q ss_pred CCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 229 GQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 229 G~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
| .....+++-....++++||+++||||+|...++.
T Consensus 167 G--~~~A~~l~l~g~~~~a~eA~~~Glv~~vv~~~~l 201 (276)
T PRK05864 167 G--SSRAFEIMLTGRDVDAEEAERIGLVSRQVPDEQL 201 (276)
T ss_pred C--HHHHHHHHHcCCccCHHHHHHcCCcceeeCHHHH
Confidence 2 2333444333455799999999999999876543
No 89
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=7.8e-06 Score=73.32 Aligned_cols=137 Identities=20% Similarity=0.284 Sum_probs=88.3
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC------CChhH--------------HHHHHHHHHhcCCCeEEEEccc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP--------------TLAIYDTMQSLKSPVGTHCVGF 165 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG------GsV~a--------------glaIyd~i~~~~~pV~Tv~~G~ 165 (279)
++.++.+.+.+.+..++ +..+.|+ |...| +++.. ...++..|...++||++.+.|.
T Consensus 26 l~~~~~~~l~~~l~~~~--~~~~vvv--l~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~ 101 (229)
T PRK06213 26 LSPAMIDALNAALDQAE--DDRAVVV--ITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH 101 (229)
T ss_pred CCHHHHHHHHHHHHHhh--ccCcEEE--EeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence 67788888888887765 2233333 33333 43321 1235566777889999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccC-ceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPL-SRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~-S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
|..+|.-|++++|. |++.++ ++|.+-....|.. +... ....+..+ . +.....+++-....
T Consensus 102 a~GgG~~lal~~D~--rva~~~~a~f~~pe~~~Gl~--~~~~-----~~~~l~~~--------~--g~~~a~~lll~g~~ 162 (229)
T PRK06213 102 AIAKGAFLLLSADY--RIGVHGPFKIGLNEVAIGMT--MPHA-----AIELARDR--------L--TPSAFQRAVINAEM 162 (229)
T ss_pred eeHHHHHHHHhCCe--eeEecCCcEEECchhhhCCc--CChH-----HHHHHHHH--------c--CHHHHHHHHHcCcc
Confidence 99999999999998 999999 8887644333211 1110 00111111 1 12233444555678
Q ss_pred eCHHHHHHcCCceeecCCCCc
Q 023631 245 FGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 245 lsa~EAleyGLID~I~~~~~~ 265 (279)
|+++||+++||||+|...++.
T Consensus 163 ~~a~eA~~~Glv~~vv~~~~l 183 (229)
T PRK06213 163 FDPEEAVAAGFLDEVVPPEQL 183 (229)
T ss_pred cCHHHHHHCCCceeccChHHH
Confidence 999999999999999875543
No 90
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=7e-06 Score=75.00 Aligned_cols=139 Identities=19% Similarity=0.157 Sum_probs=91.8
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH------------------HHHHHHHHHhcCCCeEEEEc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a------------------glaIyd~i~~~~~pV~Tv~~ 163 (279)
++.++.+.+...+..++.++..+.|+|.=. |.|+++.. ...++..|..+++||++.+.
T Consensus 28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~ 107 (262)
T PRK05995 28 FNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIARVH 107 (262)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEEEEC
Confidence 677888888888887776554454444311 33444421 02345567788999999999
Q ss_pred cccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCc
Q 023631 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIK 243 (279)
Q Consensus 164 G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~ 243 (279)
|.|..+|.-|+++||- |++.++++|.+-....|... +... . .+ .+.. ......+++-...
T Consensus 108 G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p---~~g~--~---~l--------~~~v--g~~~a~~l~l~g~ 167 (262)
T PRK05995 108 GDAYAGGMGLVAACDI--AVAADHAVFCLSEVRLGLIP---ATIS--P---YV--------IRAM--GERAARRYFLTAE 167 (262)
T ss_pred CEEEhhHHHHHHhCCE--EEeeCCCEEeCcccccccCc---cchH--H---HH--------HHHh--CHHHHHHHHHcCC
Confidence 9999999999999998 99999999876554443211 1100 0 01 1112 2333444444456
Q ss_pred eeCHHHHHHcCCceeecCCCC
Q 023631 244 RFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 244 ~lsa~EAleyGLID~I~~~~~ 264 (279)
.++++||+++||||+|...++
T Consensus 168 ~~~a~eA~~~Glv~~vv~~~~ 188 (262)
T PRK05995 168 RFDAAEALRLGLVHEVVPAEA 188 (262)
T ss_pred ccCHHHHHHcCCCCeecCHHH
Confidence 679999999999999986544
No 91
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=9.2e-06 Score=73.86 Aligned_cols=142 Identities=12% Similarity=0.075 Sum_probs=91.9
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------HHHHHHHHhcCC
Q 023631 98 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------LAIYDTMQSLKS 156 (279)
Q Consensus 98 riIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------laIyd~i~~~~~ 156 (279)
.+|.|+-+ ++.++.+.+.+.+..++.++..+.|+|.=. |.|+++..- ..++..|..+++
T Consensus 11 ~~itlnrp~~~Nal~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~k 90 (248)
T PRK06072 11 AIVTMSRPDKLNALNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDK 90 (248)
T ss_pred EEEEECCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCC
Confidence 34556654 778888999998888876655555554311 445665321 234556778889
Q ss_pred CeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 023631 157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 236 (279)
Q Consensus 157 pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~ 236 (279)
||++.+.|.|..+|.-+++++|- |++.++++|.+.....|... +..-. ..+. +..| . ...
T Consensus 91 PvIaav~G~a~GgG~~lal~cD~--~ia~~~a~f~~~~~~~Gl~p---~~g~~----~~l~--------~~~g--~-~a~ 150 (248)
T PRK06072 91 IYISAINGVTAGACIGIALSTDF--KFASRDVKFVTAFQRLGLAS---DTGVA----YFLL--------KLTG--Q-RFY 150 (248)
T ss_pred CEEEEECCeeehHHHHHHHhCCE--EEEcCCCEEecchhhcCcCC---CchHH----HHHH--------HHhh--H-HHH
Confidence 99999999999999999999998 99999999876555433211 11000 0111 1112 1 122
Q ss_pred hHhcCCceeCHHHHHHcCCceee
Q 023631 237 KDLSRIKRFGSQEALEYGLIDRI 259 (279)
Q Consensus 237 ~~~~rd~~lsa~EAleyGLID~I 259 (279)
+++-....|+|+||+++||||++
T Consensus 151 ~lll~g~~~~a~eA~~~Glv~~~ 173 (248)
T PRK06072 151 EILVLGGEFTAEEAERWGLLKIS 173 (248)
T ss_pred HHHHhCCccCHHHHHHCCCcccc
Confidence 23323455799999999999964
No 92
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=98.41 E-value=5e-06 Score=75.78 Aligned_cols=147 Identities=16% Similarity=0.203 Sum_probs=92.7
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH---------------HH-HHHHHHh
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT---------------LA-IYDTMQS 153 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag---------------la-Iyd~i~~ 153 (279)
+|.|+-+ ++.++.+.+...+..++.++..+.|+|.=+ |-|+++..- .. ++..|..
T Consensus 11 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (255)
T PRK06563 11 LIGLDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRR 90 (255)
T ss_pred EEEECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhc
Confidence 3555544 677788888888877766544444333211 234444210 11 1234667
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccC-CChhhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPF 232 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~-G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~ 232 (279)
+++||++.+.|.|..+|..+++++|- |++.++++|.+.....|.. +-... ..+.+. . ..
T Consensus 91 ~~kPvIAav~G~a~GgG~~lal~cD~--ria~~~a~f~~pe~~~Gl~p~~g~~--------~~l~~~--------v--G~ 150 (255)
T PRK06563 91 LSKPLVVAVQGYCLTLGIELMLAADI--VVAADNTRFAQLEVQRGILPFGGAT--------LRFPQA--------A--GW 150 (255)
T ss_pred CCCCEEEEEcCeeecHHHHHHHhCCE--EEecCCCEEeChhhhcCCCCCccHH--------HHHHHH--------h--hH
Confidence 88999999999999999999999998 9999999987755544321 11100 011111 1 12
Q ss_pred HHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 233 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 233 e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
....+++-....|+++||+++||||+|...++.
T Consensus 151 ~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l 183 (255)
T PRK06563 151 GNAMRYLLTGDEFDAQEALRLGLVQEVVPPGEQ 183 (255)
T ss_pred HHHHHHHHcCCCcCHHHHHHcCCCcEeeCHHHH
Confidence 223344444567799999999999999876543
No 93
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=98.40 E-value=4e-06 Score=78.05 Aligned_cols=138 Identities=13% Similarity=0.057 Sum_probs=91.1
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH-------------------------------------H
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------------------------------T 144 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a-------------------------------------g 144 (279)
++.++...+.+.+..++.+++.+.|+|.=+ |-|+++.. -
T Consensus 28 l~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (288)
T PRK08290 28 QNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLGSGTPGRDRDPGPDQHPTLWWDGATKPGVEQRYAREWEVY 107 (288)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 677788888888887776555555555321 23344321 0
Q ss_pred HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHH
Q 023631 145 LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKEL 224 (279)
Q Consensus 145 laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~y 224 (279)
..++..|..+++||++.+.|.|..+|.-|+++|+- |++.++++|.+-....|..|- .. ..+..
T Consensus 108 ~~~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD~--ria~e~a~f~~pe~~lGl~~~----~~-----~~l~~------ 170 (288)
T PRK08290 108 LGMCRRWRDLPKPTIAQVQGACIAGGLMLAWVCDL--IVASDDAFFSDPVVRMGIPGV----EY-----FAHPW------ 170 (288)
T ss_pred HHHHHHHHhCCCCEEEEECCEeeHHHHHHHHhCCE--EEeeCCCEecCcccccCcCcc----hH-----HHHHH------
Confidence 12345677889999999999999999999999998 999999998754444443221 00 00111
Q ss_pred HHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 225 SRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 225 a~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
.. ......+++-....++|+||+++||||+|...++
T Consensus 171 --~i--G~~~A~~llltG~~i~A~eA~~~GLV~~vv~~~~ 206 (288)
T PRK08290 171 --EL--GPRKAKELLFTGDRLTADEAHRLGMVNRVVPRDE 206 (288)
T ss_pred --Hh--hHHHHHHHHHcCCCCCHHHHHHCCCccEeeCHHH
Confidence 11 2233344444456789999999999999987654
No 94
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=98.39 E-value=1.1e-05 Score=73.49 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=94.4
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEE----EeCCCCChhHHH----------HHHHHH-HhcCCCeE
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY----INGPGGDVTPTL----------AIYDTM-QSLKSPVG 159 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~----INSPGGsV~agl----------aIyd~i-~~~~~pV~ 159 (279)
|.|+-+ ++.++...+.+.+..++.++..+.|+|. .=|.|+++..-. .+...+ ..+++||+
T Consensus 16 itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvI 95 (254)
T PRK08252 16 ITINRPEARNAVNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLI 95 (254)
T ss_pred EEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEE
Confidence 455544 6788888999988888766555655552 114456553210 111111 35679999
Q ss_pred EEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHh
Q 023631 160 THCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDL 239 (279)
Q Consensus 160 Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~ 239 (279)
+.+.|.|..+|.-+++++|- |++.++++|.+-....|..- +.. ....+.+ .. ......+++
T Consensus 96 aav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~p---~~g----~~~~l~~--------~v--g~~~a~~l~ 156 (254)
T PRK08252 96 AAVEGYALAGGFELALACDL--IVAARDAKFGLPEVKRGLVA---AGG----GLLRLPR--------RI--PYHIAMELA 156 (254)
T ss_pred EEECCEEehHHHHHHHhCCE--EEEeCCCEEeCchhhcCCCC---Cch----HHHHHHH--------Hc--CHHHHHHHH
Confidence 99999999999999999998 99999998865443333211 100 0111111 11 233445555
Q ss_pred cCCceeCHHHHHHcCCceeecCCCCc
Q 023631 240 SRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 240 ~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
-....|+++||+++||||+|...++.
T Consensus 157 l~g~~~~a~eA~~~Glv~~vv~~~~l 182 (254)
T PRK08252 157 LTGDMLTAERAHELGLVNRLTEPGQA 182 (254)
T ss_pred HcCCccCHHHHHHcCCcceecCcchH
Confidence 45667899999999999999876553
No 95
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=98.38 E-value=4.7e-06 Score=78.80 Aligned_cols=138 Identities=18% Similarity=0.167 Sum_probs=98.6
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChh-------HHHHHHHH---HHhcCCCeEEEEccc
Q 023631 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT-------PTLAIYDT---MQSLKSPVGTHCVGF 165 (279)
Q Consensus 96 ~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~-------aglaIyd~---i~~~~~pV~Tv~~G~ 165 (279)
++++-..+|-.+++........+...+.. .-||+-+|||||..+. .+.+|... +...+.|+++++.|-
T Consensus 125 ~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f--~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGe 202 (322)
T CHL00198 125 KENVLRNFGMPSPGGYRKALRLMKHANKF--GLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGE 202 (322)
T ss_pred hhhhhhcCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCc
Confidence 55555567888898888877766544432 5799999999997642 13355554 456678999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
++|+|++.++.++. .+|.|++.+.+-.|.+.. .+. + ++.++..+..+ -.-+
T Consensus 203 ggsGGAlal~~aD~--V~m~e~a~~sVisPEg~a------------~Il-~-------------~d~~~a~~aA~-~~~i 253 (322)
T CHL00198 203 GGSGGALGIGIGDS--IMMLEYAVYTVATPEACA------------AIL-W-------------KDSKKSLDAAE-ALKI 253 (322)
T ss_pred ccHHHHHhhhcCCe--EEEeCCeEEEecCHHHHH------------HHH-h-------------cchhhHHHHHH-HcCC
Confidence 99999999998987 999999999888875520 011 0 11122222222 3457
Q ss_pred CHHHHHHcCCceeecCCCC
Q 023631 246 GSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~~ 264 (279)
||++-+++|+||+|+..+.
T Consensus 254 ta~dL~~~giiD~ii~Ep~ 272 (322)
T CHL00198 254 TSEDLKVLGIIDEIIPEPI 272 (322)
T ss_pred CHHHHHhCCCCeEeccCCC
Confidence 9999999999999998663
No 96
>PRK08788 enoyl-CoA hydratase; Validated
Probab=98.37 E-value=7.8e-06 Score=76.32 Aligned_cols=141 Identities=11% Similarity=-0.012 Sum_probs=89.5
Q ss_pred cChhHHHHHHHHHHhhcc-----cCCCCcEEEEEe-----CCCCChhHH----------------HHHHHHHH------h
Q 023631 106 IDEEFSNQILATMLYLDS-----VDDSKRVYMYIN-----GPGGDVTPT----------------LAIYDTMQ------S 153 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~-----~d~~k~I~L~IN-----SPGGsV~ag----------------laIyd~i~------~ 153 (279)
++.++.+.+.+.+..++. ++..+.|+|.=+ |.|+++... ..+++.+. .
T Consensus 40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 119 (287)
T PRK08788 40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG 119 (287)
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 667788888888888775 333444444322 345554321 12233333 5
Q ss_pred cCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Q 023631 154 LKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFE 233 (279)
Q Consensus 154 ~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e 233 (279)
+++||++.+.|.|..+|.-|++++|- |++.++++|.+-....|. ..+..- ...+ .+.. ...
T Consensus 120 ~pkPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pev~lGl---~p~~g~----~~~l--------~~~v--G~~ 180 (287)
T PRK08788 120 AGAISIALVQGDALGGGFEAALSHHT--IIAERGAKMGFPEILFNL---FPGMGA----YSFL--------ARRV--GPK 180 (287)
T ss_pred CCCCEEEEECCeeehHHHHHHHhCCE--EEecCCCEeeCchhhhCc---CCCchH----HHHH--------HHHh--hHH
Confidence 67899999999999999999999998 999999988654333321 111000 0111 1122 223
Q ss_pred HHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 234 KITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 234 ~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
...+++-....|+++||+++||||++...++.
T Consensus 181 ~A~ellltG~~l~A~eA~~~GLV~~vv~~~el 212 (287)
T PRK08788 181 LAEELILSGKLYTAEELHDMGLVDVLVEDGQG 212 (287)
T ss_pred HHHHHHHcCCCCCHHHHHHCCCCcEecCchHH
Confidence 34455545667899999999999999876543
No 97
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=98.37 E-value=7.8e-06 Score=74.65 Aligned_cols=149 Identities=15% Similarity=0.126 Sum_probs=94.7
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHHH-------H------HHHHHHhcCC
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL-------A------IYDTMQSLKS 156 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~agl-------a------Iyd~i~~~~~ 156 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++..-. . .+..+..+++
T Consensus 15 ~itlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k 94 (254)
T PRK08259 15 TVILNRPEVRNAVDGPTAAALADAFRAFDADDAASVAVLWGAGGTFCAGADLKAVGTGRGNRLHPSGDGPMGPSRMRLSK 94 (254)
T ss_pred EEEecCCccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcChHHHhcccchhhhhhhcchhhhHHhcCCC
Confidence 3555543 677888888888888876665555555321 4456654210 0 0112235678
Q ss_pred CeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Q 023631 157 PVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKIT 236 (279)
Q Consensus 157 pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~ 236 (279)
||++.+.|.|..+|.-++++||- |++.++++|.+-....|.. .... ....+ .+..| .....
T Consensus 95 PvIaav~G~a~GgG~~lalacD~--~ia~~~a~f~~pe~~~Gl~---p~~g----~~~~l--------~~~iG--~~~a~ 155 (254)
T PRK08259 95 PVIAAVSGYAVAGGLELALWCDL--RVAEEDAVFGVFCRRWGVP---LIDG----GTVRL--------PRLIG--HSRAM 155 (254)
T ss_pred CEEEEECCEEEhHHHHHHHhCCE--EEecCCCEecCcccccCCC---CCcc----HHHHH--------HHHhC--HHHHH
Confidence 99999999999999999999998 9999999886543332211 0000 00111 11112 33344
Q ss_pred hHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 237 KDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 237 ~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
+++-....|+++||+++||||+|...++..
T Consensus 156 ~lll~g~~~~a~eA~~~Glv~~vv~~~~l~ 185 (254)
T PRK08259 156 DLILTGRPVDADEALAIGLANRVVPKGQAR 185 (254)
T ss_pred HHHHcCCccCHHHHHHcCCCCEeeChhHHH
Confidence 555456678999999999999999876543
No 98
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=98.36 E-value=8.8e-06 Score=75.17 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=92.4
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH-------------------HHHHHHHHhcCCCeEEEE
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------------LAIYDTMQSLKSPVGTHC 162 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag-------------------laIyd~i~~~~~pV~Tv~ 162 (279)
++.++...+.+.+..++.++..+.|+|.=+ |-|+++... ..++..|..+++||++.+
T Consensus 32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav 111 (275)
T PRK09120 32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV 111 (275)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 778888888888887776555555555321 334554321 124566778899999999
Q ss_pred ccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCC
Q 023631 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI 242 (279)
Q Consensus 163 ~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd 242 (279)
.|.|..+|.-|+++||. |++.++++|.+-....|.....-- ...+ .+.. ......+++-..
T Consensus 112 ~G~a~GgG~~lal~cD~--~ia~~~a~f~~pe~~~Gl~p~~g~-------~~~l--------~~~i--G~~~a~~llltg 172 (275)
T PRK09120 112 NGWCFGGGFSPLVACDL--AIAADEAQFGLSEINWGIPPGGGV-------SKAM--------ADTV--GHRDALYYIMTG 172 (275)
T ss_pred cCEEechhHHHHHhCCE--EEEeCCcEecCCccccCCCCCcch-------HHHH--------HHHc--CHHHHHHHHhcC
Confidence 99999999999999998 999999998764333332100000 0011 1111 223334444445
Q ss_pred ceeCHHHHHHcCCceeecCCCCc
Q 023631 243 KRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 243 ~~lsa~EAleyGLID~I~~~~~~ 265 (279)
..|+++||+++||||+|...++.
T Consensus 173 ~~~~A~eA~~~Glv~~vv~~~~l 195 (275)
T PRK09120 173 ETFTGRKAAEMGLVNESVPLAQL 195 (275)
T ss_pred CccCHHHHHHcCCcceecCHHHH
Confidence 67899999999999999876554
No 99
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=98.35 E-value=1e-05 Score=74.10 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=95.6
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHHH---------------H-H--HHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL---------------A-I--YDTM 151 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~agl---------------a-I--yd~i 151 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |.|+++..-. . + ...+
T Consensus 17 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (263)
T PRK07799 17 IVTMNRPEARNALSTEMLRIMVDAWDRVDNDPDIRSCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKG 96 (263)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHH
Confidence 3556654 777888888888888876665555554321 3345543210 0 1 1113
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
..+++||++.+.|.|..+|.-|++++|- |++.++++|.+.....|..-..-- ...+.+ . ..
T Consensus 97 ~~~~kpvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~l~r--------~--vG 157 (263)
T PRK07799 97 RRLTKPLIAAVEGPAIAGGTEILQGTDI--RVAGESAKFGISEAKWSLFPMGGS-------AVRLVR--------Q--IP 157 (263)
T ss_pred hcCCCCEEEEECCeEeccHHHHHHhCCE--EEecCCCEecCcccccCcCCCccH-------HHHHHH--------H--hC
Confidence 4678999999999999999999999998 999999998765444332110000 011111 1 12
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
.....+++-....|+++||+++||||+|...++..
T Consensus 158 ~~~a~~l~ltg~~~~a~eA~~~Glv~~vv~~~~l~ 192 (263)
T PRK07799 158 YTVACDLLLTGRHITAAEAKEIGLIGHVVPDGQAL 192 (263)
T ss_pred HHHHHHHHHcCCCCCHHHHHHcCCccEecCcchHH
Confidence 33344555456678999999999999999876543
No 100
>PRK08321 naphthoate synthase; Validated
Probab=98.35 E-value=1.3e-05 Score=75.08 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=99.4
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEE-----------EeCCCCChhHH------------------
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMY-----------INGPGGDVTPT------------------ 144 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~-----------INSPGGsV~ag------------------ 144 (279)
+|.|+-+ ++.++...+...+..++.++..+.|+|. .=|.|+++...
T Consensus 37 ~itlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVltg~g~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~ 116 (302)
T PRK08321 37 RIAFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLLTGNGPSPKDGGWAFCSGGDQRIRGRDGYQYAEGDEADTVDP 116 (302)
T ss_pred EEEeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEEeCCCCCCCCCCCeeecCcChhhhccccccccccccccchhh
Confidence 4566655 7788888999988888776666666664 33677775420
Q ss_pred -----H---HHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEc-cCceEEEecCccccC-CChhhHHHHHHHHH
Q 023631 145 -----L---AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAM-PLSRIALDSPAGAAR-GQADDIRNEADELL 214 (279)
Q Consensus 145 -----l---aIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~-P~S~imiHqp~~~~~-G~a~di~~~a~el~ 214 (279)
. .+++.|..+++||++.+.|.|..+|.-|+++||- |++. ++++|.+-....|.. +-..- .
T Consensus 117 ~~~~~~~~~~~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~p~~~~~--------~ 186 (302)
T PRK08321 117 ARAGRLHILEVQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCDL--TLASREHARFKQTDADVGSFDGGYGS--------A 186 (302)
T ss_pred hHHHHHHHHHHHHHHHcCCCCEEEEEcCeeehHHHHHHHhCCE--EEEecCCCEEECCccccccCCCchHH--------H
Confidence 1 2345677889999999999999999999999998 9998 689987544333211 11000 0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 215 RVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 215 ~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.+ .+..| .....+++-....|+|+||+++||||+|....+.
T Consensus 187 ~L--------~r~vG--~~~A~~l~ltG~~~~A~eA~~~GLv~~vv~~~~l 227 (302)
T PRK08321 187 YL--------ARQVG--QKFAREIFFLGRTYSAEEAHDMGAVNAVVPHAEL 227 (302)
T ss_pred HH--------HHHhC--HHHHHHHHHcCCccCHHHHHHCCCceEeeCHHHH
Confidence 11 11122 2233444445667899999999999999986543
No 101
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=98.32 E-value=1.2e-05 Score=73.86 Aligned_cols=139 Identities=13% Similarity=0.093 Sum_probs=91.5
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH------------------HHHHHHHHHhcCCCeEEEEc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a------------------glaIyd~i~~~~~pV~Tv~~ 163 (279)
++.++...+.+.+..++.++..+.|+|.=+ |.|+++.. ...++..|..+++||++.+.
T Consensus 30 l~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaaV~ 109 (265)
T PRK05674 30 FNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLAVVQ 109 (265)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 677788888888887776655565555222 34555431 01345566778899999999
Q ss_pred cccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCc
Q 023631 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIK 243 (279)
Q Consensus 164 G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~ 243 (279)
|.|..+|.-++++++- |++.++++|.+-....|.. .+..- .. + .+.. ......+++-...
T Consensus 110 G~a~GgG~~lal~~D~--~ia~~~a~f~~pe~~~Gi~---p~~~~--~~---l--------~~~v--G~~~a~~l~ltg~ 169 (265)
T PRK05674 110 GAAFGGALGLISCCDM--AIGADDAQFCLSEVRIGLA---PAVIS--PF---V--------VKAI--GERAARRYALTAE 169 (265)
T ss_pred CEEEechhhHhhhcCE--EEEeCCCEEeCcccccCCC---cchhH--HH---H--------HHHh--CHHHHHHHHHhCc
Confidence 9999999999999998 9999999887643333321 11110 00 1 1112 2223344444456
Q ss_pred eeCHHHHHHcCCceeecCCCC
Q 023631 244 RFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 244 ~lsa~EAleyGLID~I~~~~~ 264 (279)
.|+++||+++||||+|....+
T Consensus 170 ~~~a~eA~~~Glv~~vv~~~~ 190 (265)
T PRK05674 170 RFDGRRARELGLLAESYPAAE 190 (265)
T ss_pred ccCHHHHHHCCCcceecCHHH
Confidence 679999999999999987544
No 102
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=98.32 E-value=7.1e-06 Score=76.78 Aligned_cols=144 Identities=15% Similarity=0.065 Sum_probs=98.2
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH-------------------H------
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP-------------------T------ 144 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a-------------------g------ 144 (279)
+|.|+-+ ++.++.+.+.+.+..++.++..+.|+|.=+ |-|+++.. .
T Consensus 17 ~ItLnrP~~~NAl~~~~~~eL~~al~~~~~d~~vrvvVLtG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (298)
T PRK12478 17 TITLNRPEQLNTIVPPMPDEIEAAIGLAERDQDIKVIVLRGAGRAFSGGYDFGGGFQHWGEAMMTDGRWDPGKDFAMVTA 96 (298)
T ss_pred EEEecCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCcccCcCccccccccchhcccccccCchhhhhhhhh
Confidence 3556644 678888888888888776655555555321 33455431 0
Q ss_pred -----HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCcc-ccCCChhhHHHHHHHHHHHHH
Q 023631 145 -----LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAG-AARGQADDIRNEADELLRVRD 218 (279)
Q Consensus 145 -----laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~-~~~G~a~di~~~a~el~~l~~ 218 (279)
...+..|..+++||++.+.|.|..+|.-|+++||- |++.++++|.+-.... |... ... + .
T Consensus 97 ~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~A~f~~pe~~l~G~~~--~~~------~--~-- 162 (298)
T PRK12478 97 RETGPTQKFMAIWRASKPVIAQVHGWCVGGASDYALCADI--VIASDDAVIGTPYSRMWGAYL--TGM------W--L-- 162 (298)
T ss_pred hhcchHHHHHHHHhCCCCEEEEEccEEehhHHHHHHHCCE--EEEcCCcEEeccccccccCCc--hhH------H--H--
Confidence 01345677889999999999999999999999998 9999999998755542 3221 000 0 0
Q ss_pred HHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 219 YIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 219 ~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.+ ....+..+++-....|+|+||+++||||+|...++.
T Consensus 163 -------~~--vG~~~A~~llltg~~i~A~eA~~~GLV~~vv~~~~l 200 (298)
T PRK12478 163 -------YR--LSLAKVKWHSLTGRPLTGVQAAEAELINEAVPFERL 200 (298)
T ss_pred -------HH--hhHHHHHHHHHcCCccCHHHHHHcCCcceecCHHHH
Confidence 11 133444556655678899999999999999876543
No 103
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=98.31 E-value=1.7e-05 Score=76.07 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=92.8
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH------------------HHHHHHHHHhcCCCeEEEE
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP------------------TLAIYDTMQSLKSPVGTHC 162 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a------------------glaIyd~i~~~~~pV~Tv~ 162 (279)
++.++...+...+..++.++..+.|+|.=+ |-|+++.. ...+++.|..+++||++.+
T Consensus 52 ls~~ml~eL~~al~~~~~D~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVIAAV 131 (360)
T TIGR03200 52 YTTDMVKAIILAFRRASSDRDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVICRV 131 (360)
T ss_pred CCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence 788889999999988876555555555221 22444332 1235567888899999999
Q ss_pred ccccchHHHHHHcCCCCCcEEEccCceEEEecCccccC--CChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhc
Q 023631 163 VGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR--GQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLS 240 (279)
Q Consensus 163 ~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~--G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~ 240 (279)
.|.|..+|.-|+++|+. |++.++++|.+-.+..|.. +-... .+.+. . .......++-
T Consensus 132 nG~AiGGGleLALaCDl--rIAse~A~Fg~PE~rlGl~P~~Ggt~---------rLprl--------v--G~~rA~~lll 190 (360)
T TIGR03200 132 NGMRIGGGQEIGMAADF--TIAQDLANFGQAGPKHGSAPIGGATD---------FLPLM--------I--GCEQAMVSGT 190 (360)
T ss_pred CCEeeeHHHHHHHhCCE--EEEcCCCEEeCchhccCCCCCccHHH---------HHHHh--------h--CHHHHHHHHH
Confidence 99999999999999998 9999999987755544321 11111 11111 1 1122222332
Q ss_pred CCceeCHHHHHHcCCceeecCCCCc
Q 023631 241 RIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 241 rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
....|+|+||+++||||+|....+.
T Consensus 191 tGe~~sA~EA~~~GLVd~VVp~~~~ 215 (360)
T TIGR03200 191 LCEPWSAHKAKRLGIIMDVVPALKV 215 (360)
T ss_pred hCCcCcHHHHHHcCChheecCchhc
Confidence 3457799999999999999876554
No 104
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=98.30 E-value=1.6e-05 Score=72.64 Aligned_cols=137 Identities=12% Similarity=0.031 Sum_probs=88.7
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhH-----------------HHHHHHHHHhcCCCeEEEEcc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTP-----------------TLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~a-----------------glaIyd~i~~~~~pV~Tv~~G 164 (279)
++.++.+++.+.+..++ +..+.|+|.= =|.|+++.. ...++..|..+++||++.+.|
T Consensus 28 l~~~~~~~L~~~l~~~~--~~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 105 (255)
T PRK07112 28 INDRLIAECMDVLDRCE--HAATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAHVRG 105 (255)
T ss_pred CCHHHHHHHHHHHHHhh--cCceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEec
Confidence 67777777777777665 2244444321 134444421 013455677788999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCce
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKR 244 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~ 244 (279)
.|..+|..|++++|- |++.++++|.+.....|... ... ...+ .+.. ......+++-....
T Consensus 106 ~a~GgG~~lala~D~--~ia~~~a~f~~pe~~~Gl~p---~~~-----~~~l--------~~~v--g~~~a~~l~l~g~~ 165 (255)
T PRK07112 106 KVNAGGIGFVAASDI--VIADETAPFSLSELLFGLIP---ACV-----LPFL--------IRRI--GTQKAHYMTLMTQP 165 (255)
T ss_pred EEEcchhHHHHcCCE--EEEcCCCEEeCchhhhccCc---chh-----hHHH--------HHHh--CHHHHHHHHHhCCc
Confidence 999999999999998 99999999977555444321 110 0011 1111 23333444444567
Q ss_pred eCHHHHHHcCCceeecCCCC
Q 023631 245 FGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 245 lsa~EAleyGLID~I~~~~~ 264 (279)
|+++||+++||||+|....+
T Consensus 166 ~~a~eA~~~Glv~~vv~~~~ 185 (255)
T PRK07112 166 VTAQQAFSWGLVDAYGANSD 185 (255)
T ss_pred ccHHHHHHcCCCceecCcHH
Confidence 89999999999999987543
No 105
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=98.27 E-value=1.5e-05 Score=74.49 Aligned_cols=145 Identities=12% Similarity=0.086 Sum_probs=96.6
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH-------------------------
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------------- 144 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------------------- 144 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++..-
T Consensus 22 ~Itlnrp~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~G~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (302)
T PRK08272 22 RITLNRPEKGNAITADTPLELRAAVERADLDPGVHVILVSGAGKGFCAGYDLSAYAEGSSSGGGGGAYPGKRQAVNHLPD 101 (302)
T ss_pred EEEecCccccCCCCHHHHHHHHHHHHHHhhCCCceEEEEEcCCCCcccCcCHHHHhhccccccccccccccccccccccc
Confidence 3566654 778888888888888776655555554322 334444321
Q ss_pred ---------------HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHH
Q 023631 145 ---------------LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNE 209 (279)
Q Consensus 145 ---------------laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~ 209 (279)
..++..|...++||++.+.|.|..+|.-|+++|+- |++.++++|.+-... ..|-+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD~--~ias~~a~f~~pe~~--~gg~~~~---- 173 (302)
T PRK08272 102 DPWDPMIDYQMMSRFVRGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCDQ--VIAADDAKIGYPPTR--VWGVPAT---- 173 (302)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhCCCCEEEEEccEeehhhHHHHHhCCE--EEEeCCCEecCcchh--cccCChH----
Confidence 12455677889999999999999999999999998 999999988543332 1121110
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 210 ADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 210 a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
. .+ .... ......+++-....|+++||+++||||+|...++.
T Consensus 174 ~----~~--------~~~v--G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~l 215 (302)
T PRK08272 174 G----MW--------AYRL--GPQRAKRLLFTGDCITGAQAAEWGLAVEAVPPEEL 215 (302)
T ss_pred H----HH--------HHHh--hHHHHHHHHHcCCccCHHHHHHcCCCceecCHHHH
Confidence 0 01 1112 33444555555677899999999999999875443
No 106
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=98.26 E-value=4e-05 Score=69.48 Aligned_cols=145 Identities=15% Similarity=0.136 Sum_probs=91.3
Q ss_pred EEEEccc----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH-----------------HHHHHHHHH
Q 023631 99 VIFIGQN----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP-----------------TLAIYDTMQ 152 (279)
Q Consensus 99 iIfL~g~----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a-----------------glaIyd~i~ 152 (279)
+|.|+.+ ++.++...+...+..++.++....+++.=. |.|+++.. ...++..|.
T Consensus 12 ~i~Lnrp~~Nal~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 91 (239)
T PLN02267 12 ILTLTGDGEHRLNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLI 91 (239)
T ss_pred EEEeCCCCcCcCCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHh
Confidence 3445544 778888888888887775543333444322 34555421 112455677
Q ss_pred hcCCCeEEEEccccchHHHHHHcCCCCCcEEEcc-CceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 153 SLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMP-LSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 153 ~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P-~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
.+++||++.+.|.|..+|..|++++|- |++.+ .++|.+-....|... .+.. ... +.+..|.
T Consensus 92 ~~~kPvIAaV~G~a~GgG~~lalacD~--ria~~~~a~f~~pe~~~Gl~~--p~~~-----~~~--------l~~~vG~- 153 (239)
T PLN02267 92 SLPMPTIAAVTGHASAAGFILALSHDY--VLMRKDRGVLYMSEVDIGLPL--PDYF-----MAL--------LRAKIGS- 153 (239)
T ss_pred cCCCCEEEEECCcchHHHHHHHHHCCE--EEecCCCCeEeccccccCCCC--ChHH-----HHH--------HHHHcCh-
Confidence 888999999999999999999999998 99985 457765444333210 1100 001 1122222
Q ss_pred HHHH-HhHhcCCceeCHHHHHHcCCceeecCC
Q 023631 232 FEKI-TKDLSRIKRFGSQEALEYGLIDRIIRP 262 (279)
Q Consensus 232 ~e~I-~~~~~rd~~lsa~EAleyGLID~I~~~ 262 (279)
... .+++-....|+++||+++||||+|...
T Consensus 154 -~~a~~~llltG~~~~a~eA~~~Glv~~vv~~ 184 (239)
T PLN02267 154 -PAARRDVLLRAAKLTAEEAVEMGIVDSAHDS 184 (239)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHCCCcceecCC
Confidence 222 244545677899999999999999874
No 107
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=98.25 E-value=1.1e-05 Score=73.36 Aligned_cols=133 Identities=18% Similarity=0.096 Sum_probs=88.9
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH---------------HHHHHHHHhcCCCeEEEEcccc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT---------------LAIYDTMQSLKSPVGTHCVGFA 166 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag---------------laIyd~i~~~~~pV~Tv~~G~A 166 (279)
++.++.+.+.+.+..++.++..+.|+|.=. |.|+++..- ...+..|...++||++.+.|.|
T Consensus 27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a 106 (249)
T PRK05870 27 VTAEMSAQLRAAVAAAEADPDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVNGAA 106 (249)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEECCEe
Confidence 677888888888888776554555544311 334544321 1234456778899999999999
Q ss_pred chHHHHHHcCCCCCcEEEccCceEEEecCccccC---CChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCc
Q 023631 167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAAR---GQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIK 243 (279)
Q Consensus 167 AS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~---G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~ 243 (279)
..+|.-+++++|- |++.++++|.+.....|.. |-. . .+. +.. ......+++-...
T Consensus 107 ~GgG~~lal~cD~--ria~~~a~f~~pe~~~G~~p~~g~~-~---------~l~--------~~~--G~~~a~~l~ltg~ 164 (249)
T PRK05870 107 VGAGLNLALAADV--RIAGPKALFDARFQKLGLHPGGGAT-W---------MLQ--------RAV--GPQVARAALLFGM 164 (249)
T ss_pred EchhHHHHHhCCE--EEEcCCCEEeCcccccCcCCCCcce-e---------eHH--------hhh--CHHHHHHHHHhCC
Confidence 9999999999998 9999999987655443321 111 0 011 111 2333344444456
Q ss_pred eeCHHHHHHcCCceeec
Q 023631 244 RFGSQEALEYGLIDRII 260 (279)
Q Consensus 244 ~lsa~EAleyGLID~I~ 260 (279)
.++++||+++||||+|.
T Consensus 165 ~~~a~eA~~~Glv~~vv 181 (249)
T PRK05870 165 RFDAEAAVRHGLALMVA 181 (249)
T ss_pred ccCHHHHHHcCCHHHHH
Confidence 78999999999999998
No 108
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=98.25 E-value=1.9e-05 Score=72.27 Aligned_cols=144 Identities=18% Similarity=0.178 Sum_probs=92.8
Q ss_pred EEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH----------------HHHHHHHHhc
Q 023631 100 IFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------------LAIYDTMQSL 154 (279)
Q Consensus 100 IfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag----------------laIyd~i~~~ 154 (279)
|.|+-+ ++.++...+...+..+ .++..+.|+|.=+ |.|+++..- ..++..|..+
T Consensus 19 itlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 97 (260)
T PRK07659 19 IMLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTM 97 (260)
T ss_pred EEeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhC
Confidence 455544 7778888888888877 3443443333211 334554321 1234456677
Q ss_pred CCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Q 023631 155 KSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEK 234 (279)
Q Consensus 155 ~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~ 234 (279)
++||++.+.|.|..+|.-|++++|- |++.++++|.+.....|..-..-- ...+.+ . .....
T Consensus 98 ~~pvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~p~~g~-------~~~L~~--------~--vg~~~ 158 (260)
T PRK07659 98 PKLTISAIHGPAAGLGLSIALTADY--VIADISAKLAMNFIGIGLIPDGGG-------HFFLQK--------R--VGENK 158 (260)
T ss_pred CCCEEEEecCceecHHHHHHHhCCE--EEEcCCCEEcCchhhcCCCCCCch-------hhhHHH--------h--cCHHH
Confidence 8999999999999999999999998 999999998766554432110000 001111 1 23344
Q ss_pred HHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 235 ITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 235 I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
..+++-....|+++||+++||||+|. .++
T Consensus 159 a~~l~ltg~~~~a~eA~~~Glv~~vv-~~~ 187 (260)
T PRK07659 159 AKQIIWEGKKLSATEALDLGLIDEVI-GGD 187 (260)
T ss_pred HHHHHHhCCccCHHHHHHcCChHHHh-hhH
Confidence 45555556778999999999999998 443
No 109
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=98.22 E-value=1.5e-05 Score=81.90 Aligned_cols=137 Identities=19% Similarity=0.205 Sum_probs=96.8
Q ss_pred cCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChh-------HHHHHHHHHH---hcCCCeEEEEccc
Q 023631 96 RERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT-------PTLAIYDTMQ---SLKSPVGTHCVGF 165 (279)
Q Consensus 96 ~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~-------aglaIyd~i~---~~~~pV~Tv~~G~ 165 (279)
++++-..+|.++++-+....+.+...+.- .-||+.+|||||..+. .+.+|...+. ....|+++++.|-
T Consensus 213 ke~~~rnfG~~~peGyRKAlRlmkLAekf--gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGe 290 (762)
T PLN03229 213 KENIMRNFGMPTPHGYRKALRMMYYADHH--GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGE 290 (762)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHHHHc--CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 45555667777787777777766544432 5799999999998752 2345655554 5568999999999
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|+|+|++.++.++. .+|.|++.+.+-.|.+. ..+. + .+.+...+..+ -.-+
T Consensus 291 ggSGGAlA~g~aD~--VlMle~A~~sVisPEga------------AsIL-w-------------kd~~~A~eAAe-~lki 341 (762)
T PLN03229 291 GGSGGALAIGCANK--LLMLENAVFYVASPEAC------------AAIL-W-------------KSAKAAPKAAE-KLRI 341 (762)
T ss_pred cchHHHHHhhcCCE--EEEecCCeEEecCHHHH------------HHHH-h-------------cCcccHHHHHH-HcCC
Confidence 99999999999988 99999999887776542 0011 0 11111122222 3457
Q ss_pred CHHHHHHcCCceeecCCC
Q 023631 246 GSQEALEYGLIDRIIRPP 263 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~ 263 (279)
||++-+++|+||+|+..+
T Consensus 342 Ta~dL~~lGiiD~IIpEp 359 (762)
T PLN03229 342 TAQELCRLQIADGIIPEP 359 (762)
T ss_pred CHHHHHhCCCCeeeccCC
Confidence 999999999999999865
No 110
>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=98.21 E-value=1.1e-05 Score=74.49 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=105.2
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH-------------HHHHHHHHhcC
Q 023631 98 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT-------------LAIYDTMQSLK 155 (279)
Q Consensus 98 riIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag-------------laIyd~i~~~~ 155 (279)
-+|-|+-| ++..+..++...+..+++++..+.|+|+=. |-|.++.+. +.-++.+..++
T Consensus 48 ~lItlNRP~~~Nal~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (290)
T KOG1680|consen 48 ALITLNRPKALNALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLK 127 (290)
T ss_pred EEEEeCChHHhccccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcc
Confidence 34556654 677889999999999998887777777631 234443332 34567777899
Q ss_pred CCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCcccc---CCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCH
Q 023631 156 SPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIFKELSRKTGQPF 232 (279)
Q Consensus 156 ~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~---~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~ 232 (279)
+||++-+.|.|-.+|.-|++.||- |+|.|++.|+.-++..|. .|-.. +|-+. . -.
T Consensus 128 KPvIaainG~AlgGG~ELalmCDi--rva~~~Akfg~~~~~~Gi~p~~GGT~----------rl~r~--------v--G~ 185 (290)
T KOG1680|consen 128 KPVIAAINGFALGGGLELALMCDI--RVAGEGAKFGFFEIRMGIIPSWGGTQ----------RLPRI--------V--GK 185 (290)
T ss_pred cceeEeeeceeeccchhhhhhcce--EeccCCCeecccccccCCccCCCchh----------hHHHH--------h--Ch
Confidence 999999999999999999999998 999999999987776542 22211 11111 1 22
Q ss_pred HHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 233 EKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 233 e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
.+..+++-..+.++|+||++.|||++|....+
T Consensus 186 s~Ale~~ltg~~~~AqeA~~~GlVn~Vvp~~~ 217 (290)
T KOG1680|consen 186 SRALEMILTGRRLGAQEAKKIGLVNKVVPSGD 217 (290)
T ss_pred HHHHHHHHhcCcccHHHHHhCCceeEeecchh
Confidence 23344555678889999999999999998766
No 111
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=98.14 E-value=3.9e-05 Score=69.92 Aligned_cols=138 Identities=19% Similarity=0.208 Sum_probs=95.3
Q ss_pred ccChhHHHHHHHHHHhhcccCCCCcEEEEE----eCCCCChhHHH----------------HHHHHHHhcCCCeEEEEcc
Q 023631 105 NIDEEFSNQILATMLYLDSVDDSKRVYMYI----NGPGGDVTPTL----------------AIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 105 ~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I----NSPGGsV~agl----------------aIyd~i~~~~~pV~Tv~~G 164 (279)
.++.++...+.+.+..++.++..+.|+|.= =|-|+++..-. .++..|..+++||++.+.|
T Consensus 28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G 107 (257)
T COG1024 28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG 107 (257)
T ss_pred CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence 377888999999998887765555444432 23456655411 2567888899999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccCceEEEecCcccc-CCC-hhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCC
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA-RGQ-ADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRI 242 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~-~G~-a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd 242 (279)
.|..+|.-|+++|+. |++.++++|.+.....|. -|. .+. .+.++ . ......+++--.
T Consensus 108 ~a~GgG~eLal~~D~--ria~~~a~f~~pe~~iGl~Pg~g~~~------~l~r~-----------~--G~~~a~~l~ltg 166 (257)
T COG1024 108 YALGGGLELALACDI--RIAAEDAKFGLPEVNLGLLPGDGGTQ------RLPRL-----------L--GRGRAKELLLTG 166 (257)
T ss_pred eEeechhhhhhcCCe--EEecCCcEecCcccccccCCCCcHHH------HHHHh-----------c--CHHHHHHHHHcC
Confidence 999999999999998 999999999887766442 211 111 01111 1 122222233345
Q ss_pred ceeCHHHHHHcCCceeecCCC
Q 023631 243 KRFGSQEALEYGLIDRIIRPP 263 (279)
Q Consensus 243 ~~lsa~EAleyGLID~I~~~~ 263 (279)
..++++||+++||||++...+
T Consensus 167 ~~~~a~eA~~~Glv~~vv~~~ 187 (257)
T COG1024 167 EPISAAEALELGLVDEVVPDA 187 (257)
T ss_pred CcCCHHHHHHcCCcCeeeCCH
Confidence 667999999999999988753
No 112
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=98.12 E-value=6.2e-05 Score=68.75 Aligned_cols=141 Identities=16% Similarity=0.146 Sum_probs=87.2
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC------CChhH------------------HHHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYINGPG------GDVTP------------------TLAIYD 149 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG------GsV~a------------------glaIyd 149 (279)
+|.|+.+ ++.++...+...+..++.+++.+.|+| .+.| +++.. ...++.
T Consensus 18 ~i~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (260)
T PRK07827 18 TLTLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL--THTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLR 95 (260)
T ss_pred EEEEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--EcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHH
Confidence 3455543 677788888888877765544444444 3444 33321 022445
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 023631 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTG 229 (279)
Q Consensus 150 ~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG 229 (279)
.|..+++||++.+.|.|..+|.-|+++||- |++.++++|.+-....|.. .+..- ...+.+. ..
T Consensus 96 ~l~~~~kPvIaav~G~a~GgG~~lalacD~--ria~~~a~f~~pe~~~Gl~---p~~g~----~~~l~~l-~~------- 158 (260)
T PRK07827 96 AIVELPKPVIAAIDGHVRAGGFGLVGACDI--VVAGPESTFALTEARIGVA---PAIIS----LTLLPRL-SP------- 158 (260)
T ss_pred HHHhCCCCEEEEEcCeeecchhhHHHhCCE--EEEcCCCEEeCcccccCCC---CCccc----chhHHhh-hH-------
Confidence 567788999999999999999999999998 9999999886644333321 01000 0001110 00
Q ss_pred CCHHHHHhHhcCCceeCHHHHHHcCCceeecC
Q 023631 230 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 261 (279)
Q Consensus 230 ~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~ 261 (279)
....+++-....++++||+++||||++.+
T Consensus 159 ---~~a~~l~l~g~~~~a~eA~~~Glv~~v~~ 187 (260)
T PRK07827 159 ---RAAARYYLTGEKFGAAEAARIGLVTAAAD 187 (260)
T ss_pred ---HHHHHHHHhCCccCHHHHHHcCCcccchH
Confidence 01122332345679999999999999863
No 113
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.11 E-value=8e-05 Score=72.71 Aligned_cols=148 Identities=15% Similarity=0.068 Sum_probs=99.1
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------H----H---HHH
Q 023631 98 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------L----A---IYD 149 (279)
Q Consensus 98 riIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------l----a---Iyd 149 (279)
.+|.|+-+ ++.++...+...|..++.++..+.|+|.=+ |-||++.+- . . ++.
T Consensus 48 ~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~ 127 (401)
T PLN02157 48 RTAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIY 127 (401)
T ss_pred EEEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence 56777777 788899999999988877665565555422 557776421 0 1 223
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 023631 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTG 229 (279)
Q Consensus 150 ~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG 229 (279)
.|..+++||++.+.|.|..+|.-|+++|+- |++.++++|.+-....|..- +..-. ..+.++ .|
T Consensus 128 ~i~~~pkPvIA~v~G~a~GGG~~Lal~cD~--rvate~a~fa~PE~~iGl~P---d~G~s-~~L~rl-----------~G 190 (401)
T PLN02157 128 LLGTYLKPHVAILNGVTMGGGTGVSIPGTF--RVATDRTIFATPETIIGFHP---DAGAS-FNLSHL-----------PG 190 (401)
T ss_pred HHHhCCCCEEEEEeCeEeehhHHHHHhCCE--EEEeCCCEEEChhhhcCCCC---CccHH-HHHHHh-----------hh
Confidence 477889999999999999999999999998 99999998876554443211 11000 011111 11
Q ss_pred CCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 230 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 230 ~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
. .-..++-....|+++||+++||||+++...+.
T Consensus 191 ~---~a~~L~LTG~~i~A~eA~~~GLv~~vVp~~~l 223 (401)
T PLN02157 191 R---LGEYLGLTGLKLSGAEMLACGLATHYIRSEEI 223 (401)
T ss_pred H---HHHHHHHcCCcCCHHHHHHcCCceEEeCHhHH
Confidence 0 11223334567899999999999999977654
No 114
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.08 E-value=6.4e-05 Score=78.07 Aligned_cols=139 Identities=15% Similarity=0.171 Sum_probs=92.6
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEE-----eCCCCChhH----------------HHHHHHHHHhcCCCeEEEEcc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYI-----NGPGGDVTP----------------TLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-----NSPGGsV~a----------------glaIyd~i~~~~~pV~Tv~~G 164 (279)
++.++...+...+..++.++..+.|+|.= =|-|+++.. ...++..|..+++||++.+.|
T Consensus 26 l~~~~~~eL~~~l~~~~~d~~vr~VVl~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVnG 105 (699)
T TIGR02440 26 LKAEFADQVSEILSQLKRDKSIRGLVLVSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIHG 105 (699)
T ss_pred CCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 67788888888888887655555555431 144555532 123567788899999999999
Q ss_pred ccchHHHHHHcCCCCCcEEEccC--ceEEEecCccccC-CChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcC
Q 023631 165 FAYHLAGFLLAGGEKGNRSAMPL--SRIALDSPAGAAR-GQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSR 241 (279)
Q Consensus 165 ~AAS~aslIl~aG~kg~R~a~P~--S~imiHqp~~~~~-G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~r 241 (279)
.|..+|.-|+++|+- |++.++ ++|.+.....|.. +-.. ...+.+. . ......+++-.
T Consensus 106 ~a~GgG~~LaLacD~--ria~~~~~a~fg~pev~lGl~p~~g~--------~~~L~r~--------v--G~~~A~~lllt 165 (699)
T TIGR02440 106 ACLGGGLELALACHS--RVCSDDDKTVLGLPEVQLGLLPGSGG--------TQRLPRL--------I--GVSTALDMILT 165 (699)
T ss_pred EeecHHHHHHHhCCE--EEEcCCCCcEEechhhcccCCCCccH--------HHHHHHh--------c--CHHHHHHHHHc
Confidence 999999999999998 999987 4665544443321 1100 0111111 1 22233444445
Q ss_pred CceeCHHHHHHcCCceeecCCCC
Q 023631 242 IKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 242 d~~lsa~EAleyGLID~I~~~~~ 264 (279)
...++++||+++||||+|...++
T Consensus 166 G~~~~a~eA~~~GLV~~vv~~~~ 188 (699)
T TIGR02440 166 GKQLRAKQALKLGLVDDVVPQSI 188 (699)
T ss_pred CCcCCHHHHHhCCCCcEecChhH
Confidence 67789999999999999997654
No 115
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=98.07 E-value=9.6e-05 Score=71.67 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=95.8
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHHH------------H-------HHH
Q 023631 98 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPTL------------A-------IYD 149 (279)
Q Consensus 98 riIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~agl------------a-------Iyd 149 (279)
.+|.|+-+ ++.++...+.+.|..++.++..+.|+|.=+ |-||++..-. . +..
T Consensus 20 ~~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~ 99 (381)
T PLN02988 20 RILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNY 99 (381)
T ss_pred EEEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHH
Confidence 45677766 778889999999998876655555554322 3467664310 1 223
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhC
Q 023631 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTG 229 (279)
Q Consensus 150 ~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG 229 (279)
.|..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....|.....--. ..+.++-.. .+
T Consensus 100 ~i~~~pKPvIa~v~G~a~GGG~~Lal~~D~--rvate~a~f~mPE~~iGl~Pd~G~s----~~L~rl~G~----~~---- 165 (381)
T PLN02988 100 VMATYSKAQVSILNGIVMGGGAGVSVHGRF--RIATENTVFAMPETALGLFPDVGAS----YFLSRLPGF----FG---- 165 (381)
T ss_pred HHHHCCCCEEEEecCeEeehhhHHhhcCCe--EEEcCCcEEeChhhhcCcCCCccHH----HHHHHHHHH----HH----
Confidence 566789999999999999999999999998 9999999886544433321111000 012221111 11
Q ss_pred CCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 230 QPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 230 ~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
..++-....++++||++.||+|+++...+
T Consensus 166 ------~~l~LTG~~i~a~eA~~~GLv~~vv~~~~ 194 (381)
T PLN02988 166 ------EYVGLTGARLDGAEMLACGLATHFVPSTR 194 (381)
T ss_pred ------HHHHHcCCCCCHHHHHHcCCceEecCHhH
Confidence 12222346779999999999999987654
No 116
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=98.07 E-value=3.6e-05 Score=77.87 Aligned_cols=142 Identities=12% Similarity=0.069 Sum_probs=91.3
Q ss_pred cChhHHHHHHHHHHhhc-ccCCCCcEEEEEe-----CCCCChhHH---------------H----HHHHHHHhcCCCeEE
Q 023631 106 IDEEFSNQILATMLYLD-SVDDSKRVYMYIN-----GPGGDVTPT---------------L----AIYDTMQSLKSPVGT 160 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~-~~d~~k~I~L~IN-----SPGGsV~ag---------------l----aIyd~i~~~~~pV~T 160 (279)
++.++...+...+..++ .++..+.|+|.=+ |.|+++..- . .+.+.|..+++||++
T Consensus 49 l~~~m~~eL~~al~~~~~~d~~vrvVVLtg~ggk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~pkPvIA 128 (550)
T PRK08184 49 YDLGVDIELHDALQRIRFEHPEVRTVVVTSAKDRVFCSGANIFMLGGSSHAWKVNFCKFTNETRNGIEDSSRHSGLKFIA 128 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCCCCCCccCHHhHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 67788888888888877 4455566666432 456654321 0 144567778999999
Q ss_pred EEccccchHHHHHHcCCCCCcEEEccC--ceEEEecCc-cccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHh
Q 023631 161 HCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITK 237 (279)
Q Consensus 161 v~~G~AAS~aslIl~aG~kg~R~a~P~--S~imiHqp~-~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~ 237 (279)
.+.|.|..+|..|+++|+. |++.++ ++|.+-... .|. ..+... +.++ ...+........+
T Consensus 129 AVnG~a~GGG~~LALacD~--rIas~~~~a~fg~pEv~~~Gl---~P~~gg----~~rl--------~~~~~vg~~~A~~ 191 (550)
T PRK08184 129 AVNGTCAGGGYELALACDE--IVLVDDRSSAVSLPEVPLLGV---LPGTGG----LTRV--------TDKRKVRRDLADI 191 (550)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhcccc---CCCcch----HHHh--------hhhhhcCHHHHHH
Confidence 9999999999999999998 999987 676553331 221 111000 0011 1111123333344
Q ss_pred HhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 238 DLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 238 ~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
++-....|+++||+++||||++...++
T Consensus 192 llltG~~i~AeeA~~~GLVd~vv~~d~ 218 (550)
T PRK08184 192 FCTIEEGVRGKRAVDWRLVDEVVKPSK 218 (550)
T ss_pred HHHhCCcccHHHHHHcCCccEeeCHHH
Confidence 443456789999999999999997654
No 117
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.06 E-value=8.5e-05 Score=71.90 Aligned_cols=148 Identities=15% Similarity=0.090 Sum_probs=94.9
Q ss_pred cEEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH----------H-------HHHHHH
Q 023631 98 RVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT----------L-------AIYDTM 151 (279)
Q Consensus 98 riIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag----------l-------aIyd~i 151 (279)
.+|.|+.+ ++.++...+...+..++.++..+.|+|.=+ |-||++..- . .+...|
T Consensus 22 ~~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~i 101 (379)
T PLN02874 22 RVITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELIIIKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYHI 101 (379)
T ss_pred EEEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHHH
Confidence 45677766 778888999998888876555554444211 334554321 0 112346
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....|..- +..-. ..+.++ ....
T Consensus 102 ~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~f~~pe~~iGl~p---~~g~~-~~L~rl----~g~~------- 164 (379)
T PLN02874 102 HTYKKTQVALVHGLVMGGGAGLMVPMKF--RVVTEKTVFATPEASVGFHT---DCGFS-YILSRL----PGHL------- 164 (379)
T ss_pred HhCCCCEEEEecCeEEecHHHHHHhCCe--EEEeCCeEEeccccccCcCC---ChhHH-HHHHhh----hHHH-------
Confidence 6788999999999999999999999998 99999998876555443221 11100 001111 1100
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
-..++-.+..++++||+++||||+|+...+.
T Consensus 165 ---a~~l~ltG~~i~a~eA~~~GLv~~vv~~~~l 195 (379)
T PLN02874 165 ---GEYLALTGARLNGKEMVACGLATHFVPSEKL 195 (379)
T ss_pred ---HHHHHHcCCcccHHHHHHcCCccEEeCHHHH
Confidence 1122223556799999999999999976544
No 118
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.06 E-value=8.6e-05 Score=77.33 Aligned_cols=147 Identities=17% Similarity=0.207 Sum_probs=97.4
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------------HHHHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------------LAIYDTM 151 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------------laIyd~i 151 (279)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++..- ..+++.|
T Consensus 19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (715)
T PRK11730 19 ELVFDAPGSVNKLDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRL 98 (715)
T ss_pred EEEEcCCCCCCCCCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHH
Confidence 3556643 677888888888888876655555555322 345555321 1245667
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQP 231 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~ 231 (279)
..+++||++.+.|.|..+|.-|+++|+- |++.++++|.+-....|.....-- ...+-+. . .
T Consensus 99 ~~~~kPvIAav~G~a~GgG~~LAlacD~--ria~~~a~f~~pe~~lGl~p~~g~-------~~~L~rl--------v--G 159 (715)
T PRK11730 99 EDLPVPTVAAINGYALGGGCECVLATDY--RVASPDARIGLPETKLGIMPGFGG-------TVRLPRL--------I--G 159 (715)
T ss_pred HcCCCCEEEEECCEeehHHHHHHHhCCE--EEEcCCCEEeCchhhcCCCCCchH-------HHHHHHh--------c--C
Confidence 7889999999999999999999999998 999999998775544332111000 0111111 1 2
Q ss_pred HHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 232 FEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 232 ~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
.....+++-....++|+||+++||||+|...++
T Consensus 160 ~~~A~~llltG~~~~A~eA~~~GLv~~vv~~~~ 192 (715)
T PRK11730 160 ADNALEWIAAGKDVRAEDALKVGAVDAVVAPEK 192 (715)
T ss_pred HHHHHHHHHcCCcCCHHHHHHCCCCeEecCHHH
Confidence 223344444566789999999999999987654
No 119
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.06 E-value=8.5e-05 Score=77.39 Aligned_cols=146 Identities=16% Similarity=0.173 Sum_probs=98.0
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhH------------------HHHHHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTP------------------TLAIYDTM 151 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~a------------------glaIyd~i 151 (279)
+|.|+.+ ++.++...+.+.+..++.++..+.|+|.=+ |-|+++.. +..+++.|
T Consensus 19 ~Itlnrp~~~Nal~~~~~~eL~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i 98 (714)
T TIGR02437 19 ELKFDAPGSVNKFDRATLASLDQALDAIKAQSSLKGVILTSGKDAFIVGADITEFLGLFALPDAELIQWLLFANSIFNKL 98 (714)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCccccCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 3555544 677888899998888877665665555322 33444421 23466778
Q ss_pred HhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCcccc-CCChhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 023631 152 QSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKTGQ 230 (279)
Q Consensus 152 ~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~-~G~a~di~~~a~el~~l~~~i~~~ya~~tG~ 230 (279)
..+++||++.+.|.|..+|.-|+++|+. |++.++++|.+-....|. -|-.. ..++-+. .|
T Consensus 99 ~~~pkPvIAai~G~alGGGleLalacD~--ria~~~a~fglPEv~lGl~Pg~Gg--------t~rL~rl--------iG- 159 (714)
T TIGR02437 99 EDLPVPTVAAINGIALGGGCECVLATDF--RIADDTAKIGLPETKLGIMPGFGG--------TVRLPRV--------IG- 159 (714)
T ss_pred HhCCCCEEEEECCeeecHHHHHHHhCCE--EEEeCCCEEecchhhcCCCCCccH--------HHHHHHH--------hC-
Confidence 8899999999999999999999999998 999999998775544332 11100 0111111 11
Q ss_pred CHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 231 PFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 231 ~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
.....+++-....++++||+++||||+|...++
T Consensus 160 -~~~A~~llltG~~~~A~eA~~~GLvd~vv~~~~ 192 (714)
T TIGR02437 160 -ADNALEWIASGKENRAEDALKVGAVDAVVTADK 192 (714)
T ss_pred -HHHHHHHHHcCCcCCHHHHHHCCCCcEeeChhH
Confidence 222233444456789999999999999987544
No 120
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=98.05 E-value=0.00011 Score=71.94 Aligned_cols=150 Identities=14% Similarity=0.084 Sum_probs=98.5
Q ss_pred cCcEEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe----CCCCChhHH------------H----HHH--
Q 023631 96 RERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN----GPGGDVTPT------------L----AIY-- 148 (279)
Q Consensus 96 ~~riIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN----SPGGsV~ag------------l----aIy-- 148 (279)
.-++|.|+-+ ++.++...+...+..++.++..+.|+|.=+ |-||++..- . ..|
T Consensus 51 ~~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l 130 (407)
T PLN02851 51 KSRAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKF 130 (407)
T ss_pred CEEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHH
Confidence 3467888887 888899999999998887666655544322 346665321 1 122
Q ss_pred -HHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023631 149 -DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRK 227 (279)
Q Consensus 149 -d~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~ 227 (279)
..|..+++||++.+.|.|..+|.-|+++|+- |++.++++|.+-....|..- |..-. -.+.++-... +
T Consensus 131 ~~~i~~~pKPvIA~v~G~amGGG~gLal~~D~--rVate~a~famPE~~iGl~P---dvG~s-~~L~rl~g~~----g-- 198 (407)
T PLN02851 131 VYLQGTYLKPNVAIMDGITMGCGAGISIPGMF--RVVTDKTVFAHPEVQMGFHP---DAGAS-YYLSRLPGYL----G-- 198 (407)
T ss_pred HHHHHhCCCCEEEEEcCEEeeHHHHHHHhCCE--EEEeCCceEecchhccCCCC---CccHH-HHHHHhcCHH----H--
Confidence 2445678999999999999999999999987 89998888876555443211 11000 0122221110 1
Q ss_pred hCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 228 TGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 228 tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
..++-.+..|+++||+++||+|+++...+.
T Consensus 199 --------~~L~LTG~~i~a~eA~~~GLa~~~v~~~~l 228 (407)
T PLN02851 199 --------EYLALTGQKLNGVEMIACGLATHYCLNARL 228 (407)
T ss_pred --------HHHHHhCCcCCHHHHHHCCCceeecCHhhH
Confidence 112223567799999999999999977654
No 121
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=98.04 E-value=4.1e-05 Score=73.06 Aligned_cols=144 Identities=18% Similarity=0.139 Sum_probs=92.2
Q ss_pred EEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhHH-------------------HHHHH
Q 023631 99 VIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPT-------------------LAIYD 149 (279)
Q Consensus 99 iIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~ag-------------------laIyd 149 (279)
+|.|+-+ ++.++...+.+.+..++.++..+.|+|.=. |-|+++..- ..++.
T Consensus 15 ~itLnrP~~~Nal~~~m~~~L~~~l~~~~~d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (342)
T PRK05617 15 VITLNRPKALNALSLEMIRAIDAALDAWEDDDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNA 94 (342)
T ss_pred EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHH
Confidence 3555544 677888888888887766554444444221 234444220 12345
Q ss_pred HHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCcccc---CCChhhHHHHHHHHHHHHHHHHHHHHH
Q 023631 150 TMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA---RGQADDIRNEADELLRVRDYIFKELSR 226 (279)
Q Consensus 150 ~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~---~G~a~di~~~a~el~~l~~~i~~~ya~ 226 (279)
.|..+++||++.+.|.|..+|.-|+++|+- |++.++++|.+-....|. .|...-+ .++
T Consensus 95 ~i~~~~kPvIAaVnG~a~GgG~~LalacD~--ria~~~a~f~~pe~~lGl~P~~g~~~~L-------~r~---------- 155 (342)
T PRK05617 95 LIARYPKPYIALMDGIVMGGGVGISAHGSH--RIVTERTKMAMPETGIGFFPDVGGTYFL-------SRA---------- 155 (342)
T ss_pred HHHhCCCCEEEEEcCEEEccHhHHhhhCCE--EEEcCCCEeeCCccccCcCCCccceeEe-------hhc----------
Confidence 677888999999999999999999999998 999999998765544332 1111100 000
Q ss_pred HhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 227 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 227 ~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
.| ....+++-....++|+||+++||||+++...+.
T Consensus 156 -~g---~~a~~llltG~~i~A~eA~~~GLv~~vv~~~~l 190 (342)
T PRK05617 156 -PG---ALGTYLALTGARISAADALYAGLADHFVPSADL 190 (342)
T ss_pred -cc---HHHHHHHHcCCCCCHHHHHHcCCcceecCHHHH
Confidence 00 011223323556799999999999999886554
No 122
>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit. Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=97.99 E-value=0.00014 Score=66.37 Aligned_cols=132 Identities=12% Similarity=0.113 Sum_probs=84.1
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCCh----------hHHHHHHHHHH---hcCCCeEEEEccccchHHHH
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV----------TPTLAIYDTMQ---SLKSPVGTHCVGFAYHLAGF 172 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV----------~aglaIyd~i~---~~~~pV~Tv~~G~AAS~asl 172 (279)
++-+.+......+...-.++...||+..+|+||-.+ .+.-.+...+. ..+.|+++++.|.+.|+|++
T Consensus 45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l 124 (238)
T TIGR03134 45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL 124 (238)
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence 554444554444444212234689999999999653 33333334444 44599999999999999988
Q ss_pred HHcC-CCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhc--CCceeCHHH
Q 023631 173 LLAG-GEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLS--RIKRFGSQE 249 (279)
Q Consensus 173 Il~a-G~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~--rd~~lsa~E 249 (279)
.+.. ++. .+|+|++.+.+-.|.+. ++-+.++.++.++..+ ...-.+++.
T Consensus 125 amg~~ad~--v~Alp~A~i~vm~~e~a--------------------------a~I~~~~~~~~~e~a~~~~~~a~~~~~ 176 (238)
T TIGR03134 125 AHGLQADR--IIALPGAMVHVMDLESM--------------------------ARVTKRSVEELEALAKSSPVFAPGIEN 176 (238)
T ss_pred HHccCcCe--EEEcCCcEEEecCHHHH--------------------------HHHHccCHhHHHHHHHhhhhhccCHHH
Confidence 8863 555 99999999877665431 0001122233333322 134457889
Q ss_pred HHHcCCceeecCCCCc
Q 023631 250 ALEYGLIDRIIRPPRI 265 (279)
Q Consensus 250 AleyGLID~I~~~~~~ 265 (279)
+.+.|+||+|++.++.
T Consensus 177 ~~~~G~vd~vi~~~~~ 192 (238)
T TIGR03134 177 FVKLGGVHALLDVADA 192 (238)
T ss_pred HHhCCCccEEeCCCCc
Confidence 9999999999997664
No 123
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=97.98 E-value=0.00014 Score=75.66 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=96.9
Q ss_pred cEEEEccc------cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhH----------------HHHHHHH
Q 023631 98 RVIFIGQN------IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTP----------------TLAIYDT 150 (279)
Q Consensus 98 riIfL~g~------I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~a----------------glaIyd~ 150 (279)
.+|.|+-+ ++.++...+...+..++.++..+.|+|.=. |-|+++.. ...+++.
T Consensus 17 a~itlnrp~~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (708)
T PRK11154 17 AVITIDVPGEKMNTLKAEFAEQVRAILKQLREDKELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAE 96 (708)
T ss_pred EEEEECCCCCCCcCCCHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 34556644 677888888888888876554454444311 33455421 1235678
Q ss_pred HHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCc--eEEEecCcccc-CCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 023631 151 MQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLS--RIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRK 227 (279)
Q Consensus 151 i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S--~imiHqp~~~~-~G~a~di~~~a~el~~l~~~i~~~ya~~ 227 (279)
|..+++||++.+.|.|..+|.-|+++|+- |++.+++ +|.+.....|. -|-.. ...+-+ .
T Consensus 97 i~~~~kPvIAaV~G~a~GgG~~LalacD~--ria~~~a~a~fg~pe~~lGl~p~~gg--------~~~L~r--------~ 158 (708)
T PRK11154 97 IEALPIPVVAAIHGACLGGGLELALACHY--RVCTDDPKTVLGLPEVQLGLLPGSGG--------TQRLPR--------L 158 (708)
T ss_pred HHhCCCCEEEEECCeeechHHHHHHhCCE--EEEeCCCCceEeCccccCCCCCCccH--------HhHHHh--------h
Confidence 88899999999999999999999999998 9999975 66655544332 11100 011111 1
Q ss_pred hCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 228 TGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 228 tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
. ......+++-....++++||+++||||++...++
T Consensus 159 v--G~~~A~~llltG~~i~a~eA~~~GLv~~vv~~~~ 193 (708)
T PRK11154 159 I--GVSTALDMILTGKQLRAKQALKLGLVDDVVPHSI 193 (708)
T ss_pred c--CHHHHHHHHHhCCcCCHHHHHHCCCCcEecChHH
Confidence 1 2333344554567789999999999999997654
No 124
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.91 E-value=0.00011 Score=74.38 Aligned_cols=142 Identities=13% Similarity=0.071 Sum_probs=88.8
Q ss_pred cChhHHHHHHHHHHhhc-ccCCCCcEEEEEe-----CCCCChhHH-------------------HHHHHHHHhcCCCeEE
Q 023631 106 IDEEFSNQILATMLYLD-SVDDSKRVYMYIN-----GPGGDVTPT-------------------LAIYDTMQSLKSPVGT 160 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~-~~d~~k~I~L~IN-----SPGGsV~ag-------------------laIyd~i~~~~~pV~T 160 (279)
++.++.+.+.+.+..++ .++..+.|+|.-. |.|+++... ..+++.|+.+++||++
T Consensus 45 l~~~~l~eL~~al~~~~~~d~~vRvVVLtg~~Gk~FcaG~DL~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~pkPvIA 124 (546)
T TIGR03222 45 YDLGVDIELHDAVQRIRFEHPEVRTVVMTSGKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGIEDSSRHSGLKFLA 124 (546)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcCCcCHHHHhccccchhhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence 66778888888888776 4444555555432 566765431 1244566778999999
Q ss_pred EEccccchHHHHHHcCCCCCcEEEccC--ceEEEecCc-cccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHh
Q 023631 161 HCVGFAYHLAGFLLAGGEKGNRSAMPL--SRIALDSPA-GAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITK 237 (279)
Q Consensus 161 v~~G~AAS~aslIl~aG~kg~R~a~P~--S~imiHqp~-~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~ 237 (279)
.+.|.|..+|.-|+++|+- |++.++ ++|.+-... .|. .....- +.++ ............+
T Consensus 125 AVnG~a~GGG~~LALacD~--rvAs~~a~a~f~~pEv~~lGl---~P~~gg----~~~l--------~~~~~vg~~~A~~ 187 (546)
T TIGR03222 125 AVNGTCAGGGYELALACDE--IMLVDDRSSSVSLPEVPLLGV---LPGTGG----LTRV--------TDKRRVRRDHADI 187 (546)
T ss_pred EECCEeehHHHHHHHhCCE--EEEecCCCcEEEccchhccCc---CCccch----hhhc--------cccchhCHHHHHH
Confidence 9999999999999999998 999986 566543221 221 100000 0011 0000112222333
Q ss_pred HhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 238 DLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 238 ~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
++-....|+++||+++||||+|....+
T Consensus 188 llltG~~i~A~eA~~~GLV~~vv~~~~ 214 (546)
T TIGR03222 188 FCTIEEGVRGKRAKEWRLVDEVVKPSQ 214 (546)
T ss_pred HHHcCCCccHHHHHHcCCceEEeChHH
Confidence 333355679999999999999987654
No 125
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=97.76 E-value=0.00048 Score=72.09 Aligned_cols=136 Identities=17% Similarity=0.209 Sum_probs=89.8
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEEeC------CCCChhH----------------HHHHHHHHHhcCCCeEEEEc
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYING------PGGDVTP----------------TLAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INS------PGGsV~a----------------glaIyd~i~~~~~pV~Tv~~ 163 (279)
++.++...+.+.+..++.++..+.++| +.+ -|+++.. ...+++.|..+++||++.+.
T Consensus 38 l~~~~~~~L~~al~~~~~d~~vr~vVv-ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIAav~ 116 (737)
T TIGR02441 38 LSKELFAEFKEVMNELWTNEAIKSAVL-ISGKPGSFVAGADIQMIAACKTAQEVTQLSQEGQEMFERIEKSQKPIVAAIS 116 (737)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCEEEEE-EECCCCcceeCcCHHHHhccCChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 667788888888888776554444333 333 3454421 23467778889999999999
Q ss_pred cccchHHHHHHcCCCCCcEEEccCc--eEEEecCcccc-CCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhc
Q 023631 164 GFAYHLAGFLLAGGEKGNRSAMPLS--RIALDSPAGAA-RGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLS 240 (279)
Q Consensus 164 G~AAS~aslIl~aG~kg~R~a~P~S--~imiHqp~~~~-~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~ 240 (279)
|.|..+|.-|+++|+. |++.+++ +|.+.....|. -|--. ..++-+ ..| .....+++-
T Consensus 117 G~a~GgG~eLALacD~--ria~~~a~a~fglpEv~lGl~Pg~Gg--------t~rLpr--------liG--~~~A~~l~l 176 (737)
T TIGR02441 117 GSCLGGGLELALACHY--RIATKDRKTLLGLPEVMLGLLPGAGG--------TQRLPK--------LTG--VPAALDMML 176 (737)
T ss_pred CEeecHHHHHHHhCCE--EEEcCCCCCeEecchhhhCCCCCccH--------hhhHHH--------hhC--HHHHHHHHH
Confidence 9999999999999998 9999985 56654443331 11100 011111 112 222233444
Q ss_pred CCceeCHHHHHHcCCceeecCC
Q 023631 241 RIKRFGSQEALEYGLIDRIIRP 262 (279)
Q Consensus 241 rd~~lsa~EAleyGLID~I~~~ 262 (279)
....++++||+++||||+|...
T Consensus 177 tG~~i~a~eA~~~GLVd~vv~~ 198 (737)
T TIGR02441 177 TGKKIRADRAKKMGIVDQLVDP 198 (737)
T ss_pred cCCcCCHHHHHHCCCCeEecCC
Confidence 5677799999999999999875
No 126
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=97.76 E-value=0.00021 Score=71.89 Aligned_cols=143 Identities=20% Similarity=0.235 Sum_probs=93.5
Q ss_pred ccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCC----------ChhHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 023631 103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG----------DVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF 172 (279)
Q Consensus 103 ~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGG----------sV~aglaIyd~i~~~~~pV~Tv~~G~AAS~asl 172 (279)
.|.+++..+..+...+...+. ..-||+..+||||- .+..+-.++.++.....|.++++.|-++++|++
T Consensus 328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~ 405 (512)
T TIGR01117 328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL 405 (512)
T ss_pred cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence 466778888887776665443 35799999999996 355666677777777899999999999999877
Q ss_pred HHcC----CCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHH
Q 023631 173 LLAG----GEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQ 248 (279)
Q Consensus 173 Il~a----G~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~ 248 (279)
.+++ ++. .++.|++++.+-.|.+.. .+. ..+++.+..+. ++ .-.+++.+..+ .+.++.
T Consensus 406 am~~~~~~~d~--~~a~p~a~~~v~~pe~a~-----~i~-~~~~l~~~~~~-----~~---~~~~~~~~~~~--~~~~~~ 467 (512)
T TIGR01117 406 AMCSKHLGADQ--VYAWPTAEIAVMGPAGAA-----NII-FRKDIKEAKDP-----AA---TRKQKIAEYRE--EFANPY 467 (512)
T ss_pred HhccccCCCCE--EEEcCCCeEeecCHHHHH-----HHH-hhhhcccccCH-----HH---HHHHHHHHHHH--hhcCHH
Confidence 7764 444 899999999888776531 000 00111000000 00 00111222222 255889
Q ss_pred HHHHcCCceeecCCCCc
Q 023631 249 EALEYGLIDRIIRPPRI 265 (279)
Q Consensus 249 EAleyGLID~I~~~~~~ 265 (279)
.+.+.|+||.|+++.+.
T Consensus 468 ~~a~~g~vD~VI~P~~t 484 (512)
T TIGR01117 468 KAAARGYVDDVIEPKQT 484 (512)
T ss_pred HHHhcCCCCeeEChHHH
Confidence 99999999999987553
No 127
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=97.68 E-value=0.00078 Score=68.27 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=91.0
Q ss_pred cChhHHHHHHHHHHhhccc-CCCCcEEEEEe-----CCCCChh-----------HH----HHHHHHHHhcCCCeEEEE-c
Q 023631 106 IDEEFSNQILATMLYLDSV-DDSKRVYMYIN-----GPGGDVT-----------PT----LAIYDTMQSLKSPVGTHC-V 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~-d~~k~I~L~IN-----SPGGsV~-----------ag----laIyd~i~~~~~pV~Tv~-~ 163 (279)
++.++...+...+..++.+ +..+.|+|.=. |-|+++. .. ..++..|..+++||++.+ .
T Consensus 295 l~~~~~~~L~~a~~~~~~~d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav~~ 374 (546)
T TIGR03222 295 WPLKLARELDDAILHLRTNELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALIEP 374 (546)
T ss_pred CCHHHHHHHHHHHHHHhhCCCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence 6678888888888888754 33343333221 2334431 10 125567888899999999 8
Q ss_pred cccchHH-HHHHcCCCCCcEEE-------ccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHh-CCCHHH
Q 023631 164 GFAYHLA-GFLLAGGEKGNRSA-------MPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKT-GQPFEK 234 (279)
Q Consensus 164 G~AAS~a-slIl~aG~kg~R~a-------~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~t-G~~~e~ 234 (279)
|.|..+| .=|+++|+- |++ .|+++|.+-....|.....--. .++ .+.. |.+...
T Consensus 375 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~~e~~lGl~p~~gg~-------~~L--------~~~v~G~~~a~ 437 (546)
T TIGR03222 375 GSCFAGTLAELAFAADR--SYMLAFPDNNDPEPAITLSELNFGLYPMVNGL-------SRL--------ATRFYAEPAPV 437 (546)
T ss_pred CeEeHHHHHHHHHhCce--eeecCCCCCCCCCCEEeCCccccccCCCcCcH-------HHH--------HHHhcCchhHH
Confidence 9999999 999999998 999 8999987766554422111000 111 1222 333222
Q ss_pred HHhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 235 ITKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 235 I~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
-.+++-....|+++||+++|||++|...++.
T Consensus 438 ~~~~~ltg~~i~A~eA~~~Glv~~vv~~~~l 468 (546)
T TIGR03222 438 AAVRDKIGQALDAEEAERLGLVTAAPDDIDW 468 (546)
T ss_pred HHHHHHhCCCCCHHHHHHcCCcccccCchHH
Confidence 2222223566799999999999999876553
No 128
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=97.33 E-value=0.0016 Score=66.30 Aligned_cols=151 Identities=13% Similarity=-0.012 Sum_probs=91.0
Q ss_pred cccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCC----------hhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 023631 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGD----------VTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 173 (279)
Q Consensus 104 g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGs----------V~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslI 173 (279)
|.++.+.+.....-+...+. -.-||+..+|+||-. +..+-.+..++.....|++|++.|-++++|++.
T Consensus 380 g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a 457 (569)
T PLN02820 380 GILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG 457 (569)
T ss_pred CccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence 55777777776665544433 256999999999944 455567777777888999999999999999999
Q ss_pred HcCCC--CCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHH
Q 023631 174 LAGGE--KGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEAL 251 (279)
Q Consensus 174 l~aG~--kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAl 251 (279)
+++.. ....++.|++++.+-.|.+. ..+. ..+++.+.++.-.+.-.+....-.+++.+..+ ...++-.|-
T Consensus 458 M~g~~~~~d~~~awp~A~i~vmg~e~a-----a~il-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~p~~aa 529 (569)
T PLN02820 458 MCGRAYSPNFLFMWPNARIGVMGGAQA-----AGVL-AQIERENKKRQGIQWSKEEEEAFKAKTVEAYE--REANPYYST 529 (569)
T ss_pred hcCcCCCCCEEEECCCCeEEecCHHHH-----HHHH-HHHHhhhhhhccccCCccHHHHHHHHHHHHHH--HhCCHHHHH
Confidence 97442 23478899999877666432 1110 11111111110000000000000111222222 255788899
Q ss_pred HcCCceeecCCCC
Q 023631 252 EYGLIDRIIRPPR 264 (279)
Q Consensus 252 eyGLID~I~~~~~ 264 (279)
+.|+||+|+++.+
T Consensus 530 ~~~~vD~VIdP~d 542 (569)
T PLN02820 530 ARLWDDGVIDPAD 542 (569)
T ss_pred HcCCcCcccCHHH
Confidence 9999999998754
No 129
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=97.32 E-value=0.00041 Score=69.40 Aligned_cols=148 Identities=22% Similarity=0.211 Sum_probs=89.8
Q ss_pred cccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC----------CChhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 023631 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 173 (279)
Q Consensus 104 g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG----------GsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslI 173 (279)
|.++.+.+.....-+...+.. .-||+..+|+|| |.+..+-.+.+++...+.|++|++.|.+.++|++.
T Consensus 308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a 385 (493)
T PF01039_consen 308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA 385 (493)
T ss_dssp GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence 678888888877765555443 469999999999 55777889999999999999999999999988888
Q ss_pred HcCCCCC--cEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHHH
Q 023631 174 LAGGEKG--NRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEAL 251 (279)
Q Consensus 174 l~aG~kg--~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAl 251 (279)
+++..-+ ..++.|++++.+..|.+.. .+. ..+++......=.+ .++. ..+++.+.. +...++..|.
T Consensus 386 m~~~~~~~~~~~Awp~a~~~vm~~e~a~-----~i~-~~~~~~~~~~~~~~-~~~~---~~~~~~~~~--~~~~~~~~~a 453 (493)
T PF01039_consen 386 MCGRGYGPDFVFAWPTAEIGVMGPEGAA-----SIL-YRDELEAAEAEGAD-PEAQ---RAEKIAEYE--DELSSPYRAA 453 (493)
T ss_dssp TTGGGGTTSEEEEETT-EEESS-HHHHH-----HHH-THHHHHHSCHCCHS-HHHH---HHHHHHHHH--HHHSSHHHHH
T ss_pred hcccccchhhhhhhhcceeeecChhhhh-----eee-ehhhhhhhhcccch-hHHH---HHHHHHHHH--HhcCCHHHHH
Confidence 8776222 3899999999887775431 100 00011100000000 0000 011112211 2234789999
Q ss_pred HcCCceeecCCCCc
Q 023631 252 EYGLIDRIIRPPRI 265 (279)
Q Consensus 252 eyGLID~I~~~~~~ 265 (279)
+.|++|.|+++.+.
T Consensus 454 ~~~~~D~ii~p~~t 467 (493)
T PF01039_consen 454 SRGYVDDIIDPAET 467 (493)
T ss_dssp HTTSSSEESSGGGH
T ss_pred hcCCCCCccCHHHH
Confidence 99999999988553
No 130
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=97.26 E-value=0.0023 Score=64.97 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=88.1
Q ss_pred cChhHHHHHHHHHHhhcc-cCCCCcEEEEEe-----CCCCChh-----------HH----HHHHHHHHhcCCCeEEEEc-
Q 023631 106 IDEEFSNQILATMLYLDS-VDDSKRVYMYIN-----GPGGDVT-----------PT----LAIYDTMQSLKSPVGTHCV- 163 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~-~d~~k~I~L~IN-----SPGGsV~-----------ag----laIyd~i~~~~~pV~Tv~~- 163 (279)
++.++...+.+.+..++. ++..+.|+|.=. |-|+++. .. ..++..|..+++||++.+.
T Consensus 299 l~~~~~~eL~~al~~~~~~d~~vr~vVltg~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~~ 378 (550)
T PRK08184 299 WPLQMARELDDAILHLRTNELDIGTWVLKTEGDAAAVLAADATLLAHKDHWLVRETRGYLRRTLKRLDVTSRSLFALIEP 378 (550)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCCcEEeCCChhhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 567788888888887765 333444444321 3344521 00 1244567777899999997
Q ss_pred cccchHH-HHHHcCCCCCcEEEc-------cCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Q 023631 164 GFAYHLA-GFLLAGGEKGNRSAM-------PLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKI 235 (279)
Q Consensus 164 G~AAS~a-slIl~aG~kg~R~a~-------P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I 235 (279)
|.|..+| .-|+++|+. |++. |+++|.+-....|..-..--. .++-+.+ .|.....-
T Consensus 379 G~a~GgG~~eLalacD~--~ia~~~~~~~~~~a~f~~pe~~~Gl~p~~gg~-------~~L~r~~-------vG~~~A~~ 442 (550)
T PRK08184 379 GSCFAGTLAELALAADR--SYMLALPDDNDPAPAITLSALNFGLYPMVNGL-------SRLARRF-------YGEPDPLA 442 (550)
T ss_pred CceehhHHHHHHHHCCh--hhhcCCCCCCCCCCEEECccccccCCCCCCcH-------HHhHHHh-------cChHHHHH
Confidence 9999999 999999998 9999 999987766554421110000 0111110 12221111
Q ss_pred HhHhcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 236 TKDLSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 236 ~~~~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
..++-....++++||+++||||+|....+.
T Consensus 443 ~~l~~tg~~i~A~eA~~~GLv~~vv~~~~l 472 (550)
T PRK08184 443 AVRAKIGQPLDADAAEELGLVTAAPDDIDW 472 (550)
T ss_pred HHHHHhCCcCCHHHHHHcCCcccccChHHH
Confidence 111123567799999999999999886554
No 131
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=97.25 E-value=0.0035 Score=58.91 Aligned_cols=128 Identities=16% Similarity=0.152 Sum_probs=86.2
Q ss_pred EccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHH-------HHHHH---HhcCCCeEEEEccccchHHH
Q 023631 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLA-------IYDTM---QSLKSPVGTHCVGFAYHLAG 171 (279)
Q Consensus 102 L~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~agla-------Iyd~i---~~~~~pV~Tv~~G~AAS~as 171 (279)
++|.++...++.+...+...... .-|++++.+|+|.....|.. ++..+ .....|.++++.|-++.+++
T Consensus 133 ~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~a 210 (292)
T PRK05654 133 MGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGVS 210 (292)
T ss_pred ccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHHH
Confidence 46667777888888877655443 46899999999988766542 22233 22357999999999988877
Q ss_pred HHHc-CCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHH
Q 023631 172 FLLA-GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEA 250 (279)
Q Consensus 172 lIl~-aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EA 250 (279)
..++ .++- +++.|++.|.+--|.. + .+.++ +++.+ -+-+++-+
T Consensus 211 as~a~~~D~--iia~p~A~ig~aGprv--------i------------------e~~~~---e~lpe-----~~~~ae~~ 254 (292)
T PRK05654 211 ASFAMLGDI--IIAEPKALIGFAGPRV--------I------------------EQTVR---EKLPE-----GFQRAEFL 254 (292)
T ss_pred HHHHHcCCE--EEEecCcEEEecCHHH--------H------------------Hhhhh---hhhhh-----hhcCHHHH
Confidence 7655 4776 8999999998866521 0 01111 11111 14467778
Q ss_pred HHcCCceeecCCCCccc
Q 023631 251 LEYGLIDRIIRPPRIKE 267 (279)
Q Consensus 251 leyGLID~I~~~~~~~~ 267 (279)
.+.|+||.|+++.+..+
T Consensus 255 ~~~G~vD~Vv~~~e~r~ 271 (292)
T PRK05654 255 LEHGAIDMIVHRRELRD 271 (292)
T ss_pred HhCCCCcEEECHHHHHH
Confidence 89999999999876554
No 132
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=97.21 E-value=0.0033 Score=58.88 Aligned_cols=128 Identities=16% Similarity=0.156 Sum_probs=88.2
Q ss_pred EccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHH-------HHH---HHhcCCCeEEEEccccchHHH
Q 023631 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAI-------YDT---MQSLKSPVGTHCVGFAYHLAG 171 (279)
Q Consensus 102 L~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaI-------yd~---i~~~~~pV~Tv~~G~AAS~as 171 (279)
++|.++....+.+...+...... .-|+++.++|+|.....+... +.. +.....|.++++.|-++.+++
T Consensus 132 ~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~a 209 (285)
T TIGR00515 132 MGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGVS 209 (285)
T ss_pred cCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHHH
Confidence 45667777788888877655433 469999999999876665422 222 222347999999999998877
Q ss_pred HHHc-CCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHHH
Q 023631 172 FLLA-GGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEA 250 (279)
Q Consensus 172 lIl~-aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~EA 250 (279)
..++ .++- .+|.|++.|++--|.. +.+.++. .+. +-+-+|+-+
T Consensus 210 as~a~~~D~--iia~p~A~ig~aGprV--------------------------ie~ti~e-------~lp-e~~q~ae~~ 253 (285)
T TIGR00515 210 ASFAMLGDL--NIAEPKALIGFAGPRV--------------------------IEQTVRE-------KLP-EGFQTSEFL 253 (285)
T ss_pred HHHHhCCCE--EEEECCeEEEcCCHHH--------------------------HHHHhcC-------ccc-hhcCCHHHH
Confidence 7664 7776 8999999998755521 1112221 222 225578888
Q ss_pred HHcCCceeecCCCCccc
Q 023631 251 LEYGLIDRIIRPPRIKE 267 (279)
Q Consensus 251 leyGLID~I~~~~~~~~ 267 (279)
.+.|+||.|+++.+.++
T Consensus 254 ~~~G~vD~iv~~~~~r~ 270 (285)
T TIGR00515 254 LEHGAIDMIVHRPEMKK 270 (285)
T ss_pred HhCCCCcEEECcHHHHH
Confidence 89999999999877654
No 133
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=97.13 E-value=0.0025 Score=59.56 Aligned_cols=144 Identities=20% Similarity=0.180 Sum_probs=95.9
Q ss_pred chhHhhhcCcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCCh-------hHHHHHHHH---HHhcCCCe
Q 023631 89 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV-------TPTLAIYDT---MQSLKSPV 158 (279)
Q Consensus 89 di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV-------~aglaIyd~---i~~~~~pV 158 (279)
|.-+++.++ .|--.++-...-++-+...+.- .-||..+||+||-.. -.+.+|... |-.++.||
T Consensus 119 dtk~~~~rN-----FGm~~PeGyRKAlRlm~~AekF--~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPi 191 (317)
T COG0825 119 DTKEKLKRN-----FGMPRPEGYRKALRLMKLAEKF--GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPI 191 (317)
T ss_pred cchhHHHhc-----CCCCCchHHHHHHHHHHHHHHh--CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCE
Confidence 444555543 5555676666555555443332 579999999999543 234556543 45567899
Q ss_pred EEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhH
Q 023631 159 GTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKD 238 (279)
Q Consensus 159 ~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~ 238 (279)
++++.|...|+|++-+..|++ -+|+-||..-+-.|.+- ++ +.++ +.++..+.
T Consensus 192 I~iVIGEGgSGGALAi~vad~--V~mle~s~ySVisPEG~----As---ILWk-------------------D~~ka~eA 243 (317)
T COG0825 192 ISIVIGEGGSGGALAIGVADR--VLMLENSTYSVISPEGC----AS---ILWK-------------------DASKAKEA 243 (317)
T ss_pred EEEEecCCCchhhHHhhHHHH--HHHHHhceeeecChhhh----hh---hhhc-------------------ChhhhHHH
Confidence 999999999999999999998 78999999988788652 10 1111 11111111
Q ss_pred hcCCceeCHHHHHHcCCceeecCCCCcccc
Q 023631 239 LSRIKRFGSQEALEYGLIDRIIRPPRIKED 268 (279)
Q Consensus 239 ~~rd~~lsa~EAleyGLID~I~~~~~~~~~ 268 (279)
.+ ..-+||.+-+++||||.|+..+.-.+.
T Consensus 244 Ae-~mkita~dLk~lgiID~II~Ep~ggAh 272 (317)
T COG0825 244 AE-AMKITAHDLKELGIIDGIIPEPLGGAH 272 (317)
T ss_pred HH-HcCCCHHHHHhCCCcceeccCCCCccc
Confidence 11 233589999999999999987665443
No 134
>KOG1681 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=96.43 E-value=0.0012 Score=59.95 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=76.1
Q ss_pred HHHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHH
Q 023631 145 LAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKEL 224 (279)
Q Consensus 145 laIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~y 224 (279)
..-|..|..+++||++-+.|.|-.+|.=|..||+. ||+...+.|-+...-.| -+.|+. -|+++.+.+
T Consensus 116 Q~~~t~ie~CpKPVIaavHg~CiGagvDLiTAcDI--RycsqDAffsvkEVDvg---laADvG----TL~RlpkvV---- 182 (292)
T KOG1681|consen 116 QDTFTAIERCPKPVIAAVHGACIGAGVDLITACDI--RYCSQDAFFSVKEVDVG---LAADVG----TLNRLPKVV---- 182 (292)
T ss_pred HHHHHHHHhCChhHHHHHHhhhccccccceeecce--eeecccceeeeeeeeee---hhhchh----hHhhhhHHh----
Confidence 34478888999999999999999999999999998 99999999988776543 223321 244443322
Q ss_pred HHHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcc
Q 023631 225 SRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIK 266 (279)
Q Consensus 225 a~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~ 266 (279)
| +...+.+..-..+-|+|.||++.|||-+|...++..
T Consensus 183 ----G-n~s~~~elafTar~f~a~EAl~~GLvSrvf~dk~~l 219 (292)
T KOG1681|consen 183 ----G-NQSLARELAFTARKFSADEALDSGLVSRVFPDKEEL 219 (292)
T ss_pred ----c-chHHHHHHHhhhhhcchhhhhhcCcchhhcCCHHHH
Confidence 1 223344444445678999999999999998876543
No 135
>TIGR03133 malonate_beta malonate decarboxylase, beta subunit. Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.
Probab=96.19 E-value=0.035 Score=51.78 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=70.9
Q ss_pred EEccccChhHHHHHHHHHHhhcccC---CCCcEEEEEeCCCCChhHHH-------HHHHHHHhcC--CCeEEEEccc--c
Q 023631 101 FIGQNIDEEFSNQILATMLYLDSVD---DSKRVYMYINGPGGDVTPTL-------AIYDTMQSLK--SPVGTHCVGF--A 166 (279)
Q Consensus 101 fL~g~I~~~~a~~ii~~Ll~L~~~d---~~k~I~L~INSPGGsV~agl-------aIyd~i~~~~--~pV~Tv~~G~--A 166 (279)
|.+|.+.+.....+...+.....++ ...++++.++|.|+.+..+. .++..+...+ .|+++++.|- |
T Consensus 70 ~~GGS~G~~~g~Ki~r~~e~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~gc 149 (274)
T TIGR03133 70 FQGGSVGEVHGAKIVGALRLAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVGC 149 (274)
T ss_pred ccCcCCCHHHHHHHHHHHHHHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 5678888888888888766543322 22489999999999876643 2343333333 7999999999 7
Q ss_pred chHHHHHHcCCCCCcEEEccCceEEEecCc
Q 023631 167 YHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (279)
Q Consensus 167 AS~aslIl~aG~kg~R~a~P~S~imiHqp~ 196 (279)
+.+++++++.++. .+|.|++++.+--|.
T Consensus 150 ~GG~a~~a~l~D~--vim~~~a~i~~aGP~ 177 (274)
T TIGR03133 150 FGGMGIAAGLCSY--LIMTEEGRLGLSGPE 177 (274)
T ss_pred chHHHHHHhcCCE--EEEeCCcEEeccCHH
Confidence 8888899999987 999999999987774
No 136
>PRK07189 malonate decarboxylase subunit beta; Reviewed
Probab=95.87 E-value=0.046 Score=51.64 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=70.8
Q ss_pred EEccccChhHHHHHHHHHHhhcccCC----CCcEEEEEeCCCCChhHHH-------HHHHHHHhcC--CCeEEEEccc--
Q 023631 101 FIGQNIDEEFSNQILATMLYLDSVDD----SKRVYMYINGPGGDVTPTL-------AIYDTMQSLK--SPVGTHCVGF-- 165 (279)
Q Consensus 101 fL~g~I~~~~a~~ii~~Ll~L~~~d~----~k~I~L~INSPGGsV~agl-------aIyd~i~~~~--~pV~Tv~~G~-- 165 (279)
|++|.+.+.....+...+.... +.. -.++++.+.|.|+.+..+. .++..+..++ .|+++++.|-
T Consensus 79 f~GGS~G~~~g~Ki~r~~e~A~-~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g 157 (301)
T PRK07189 79 FMGGSVGEVHGAKLAGALELAA-EDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG 157 (301)
T ss_pred ccCcCcCHHHHHHHHHHHHHHH-HhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence 4688888888888888665443 332 2699999999998875433 3444444333 7999999998
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCc
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPA 196 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~ 196 (279)
|+.+++++++.++. .+|.|+++|.+--|.
T Consensus 158 c~GG~a~~a~l~D~--iIm~~~a~iglaGP~ 186 (301)
T PRK07189 158 CFGGMGIAAALCSY--LIVSEEGRLGLSGPE 186 (301)
T ss_pred CcHHHHHHHhcCCE--EEEECCcEEeccCHH
Confidence 88999999999987 999999999987773
No 137
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=95.77 E-value=0.029 Score=56.54 Aligned_cols=93 Identities=20% Similarity=0.254 Sum_probs=68.6
Q ss_pred ccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC----------CChhHHHHHHHHHHhcCCCeEEEEccccchHHHH
Q 023631 103 GQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGF 172 (279)
Q Consensus 103 ~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG----------GsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~asl 172 (279)
+|.|+.+.+..--.-+ .|... -.-||.+..|.|| |-+.-|-.|..++-..+.|.+|++.+-+..+|++
T Consensus 337 ~G~l~~~sa~KaArFI-~~cd~-~~iPlv~L~d~pGFm~G~~~E~~giik~Gakl~~A~aeatVPkitvI~rkayGga~~ 414 (526)
T COG4799 337 GGVLDIDSADKAARFI-RLCDA-FNIPLVFLVDTPGFMPGTDQEYGGIIKHGAKLLYAVAEATVPKITVITRKAYGGAYY 414 (526)
T ss_pred ccccchHHHHHHHHHH-Hhhhc-cCCCeEEEeCCCCCCCChhHHhChHHHhhhHHHhhHhhccCCeEEEEecccccceee
Confidence 6778887776644433 44322 2469999999999 5567788899999999999999999999999988
Q ss_pred HHcCCCCC--cEEEccCceEEEecCcc
Q 023631 173 LLAGGEKG--NRSAMPLSRIALDSPAG 197 (279)
Q Consensus 173 Il~aG~kg--~R~a~P~S~imiHqp~~ 197 (279)
..++..-+ .-||-|+++|.+..|.+
T Consensus 415 ~M~~~~~~~~~~~AwP~a~iaVMG~eg 441 (526)
T COG4799 415 VMGGKALGPDFNYAWPTAEIAVMGPEG 441 (526)
T ss_pred eecCccCCCceeEecCcceeeecCHHH
Confidence 88764432 35677777776655543
No 138
>KOG1679 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=95.53 E-value=0.028 Score=50.87 Aligned_cols=136 Identities=18% Similarity=0.181 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEEEeCCCC-----C---------------hhHHHHHHHHHHhcCCCeEEEEccccchH
Q 023631 110 FSNQILATMLYLDSVDDSKRVYMYINGPGG-----D---------------VTPTLAIYDTMQSLKSPVGTHCVGFAYHL 169 (279)
Q Consensus 110 ~a~~ii~~Ll~L~~~d~~k~I~L~INSPGG-----s---------------V~aglaIyd~i~~~~~pV~Tv~~G~AAS~ 169 (279)
+.+.+...+..+..++..+-+.|.=-+||= + |..-..+++.|..++.||++-+.|.|..+
T Consensus 59 ~~~~l~~~l~~lk~D~~~RvvilrS~vpgvFCaGADLKER~~Ms~~Ev~~fV~~lR~~~~dIe~Lp~P~IAAidG~ALGG 138 (291)
T KOG1679|consen 59 FVKQLREVLDELKYDNKVRVVILRSLVPGVFCAGADLKERKTMSPSEVTRFVNGLRGLFNDIERLPQPVIAAIDGAALGG 138 (291)
T ss_pred HHHHHHHHHHHHhhCCceeEEEEecCCCceeecCcchHhhhcCCHHHHHHHHHHHHHHHHHHHhCCccceehhcchhccc
Confidence 445555566666666555555555555772 1 34445788889999999999999999999
Q ss_pred HHHHHcCCCCCcEEEccCceEEEecCcc----ccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 170 AGFLLAGGEKGNRSAMPLSRIALDSPAG----AARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 170 aslIl~aG~kg~R~a~P~S~imiHqp~~----~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
|-=++++|+. |++..++.+++-.... |..|+ +++-+.+- ....++++-..+.|
T Consensus 139 GLElALACDi--Rva~s~akmGLvET~laiiPGaGGt-----------QRLpR~vg----------~alaKELIftarvl 195 (291)
T KOG1679|consen 139 GLELALACDI--RVAASSAKMGLVETKLAIIPGAGGT-----------QRLPRIVG----------VALAKELIFTARVL 195 (291)
T ss_pred chhhhhhccc--eehhhhccccccccceeeecCCCcc-----------chhHHHHh----------HHHHHhHhhhheec
Confidence 9999999998 9999999887654432 23332 12222221 11223444456788
Q ss_pred CHHHHHHcCCceeecCCCCcccc
Q 023631 246 GSQEALEYGLIDRIIRPPRIKED 268 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~~~~~~ 268 (279)
++.||.+.|||..+++..+.-+.
T Consensus 196 ~g~eA~~lGlVnhvv~qneegda 218 (291)
T KOG1679|consen 196 NGAEAAKLGLVNHVVEQNEEGDA 218 (291)
T ss_pred cchhHHhcchHHHHHhcCccccH
Confidence 99999999999999887655443
No 139
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=95.04 E-value=0.13 Score=48.48 Aligned_cols=128 Identities=14% Similarity=0.116 Sum_probs=84.7
Q ss_pred EccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHH----H-------HHHHHHhcCCCeEEEEccccchHH
Q 023631 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL----A-------IYDTMQSLKSPVGTHCVGFAYHLA 170 (279)
Q Consensus 102 L~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~agl----a-------Iyd~i~~~~~pV~Tv~~G~AAS~a 170 (279)
++|.+.....+.+...+..... . .-|+++...|.|+.+..|. . ++...+.-..|.++++.|-++.++
T Consensus 145 ~gGSmG~v~geKi~ra~e~A~~-~-rlPlV~l~~SGGARmQEg~~sL~qmak~saa~~~~~~~~~vP~Isvl~gPt~GG~ 222 (296)
T CHL00174 145 MGGSMGSVVGEKITRLIEYATN-E-SLPLIIVCASGGARMQEGSLSLMQMAKISSALYDYQSNKKLFYISILTSPTTGGV 222 (296)
T ss_pred cccCcCHHHHHHHHHHHHHHHH-c-CCCEEEEECCCCccccccchhhhhhHHHHHHHHHHHHcCCCCEEEEEcCCCchHH
Confidence 4555556667888776665433 2 4689999999998765544 1 221122344799999999998888
Q ss_pred HHHHcC-CCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCceeCHHH
Q 023631 171 GFLLAG-GEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQE 249 (279)
Q Consensus 171 slIl~a-G~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~E 249 (279)
+..++. |+- .++-|++.|.+.-|.. ++ +-+|. .+. +-|-+++-
T Consensus 223 aas~a~l~Di--iiae~~A~IgfAGPrV---------------Ie-----------~t~ge-------~lp-e~fq~ae~ 266 (296)
T CHL00174 223 TASFGMLGDI--IIAEPNAYIAFAGKRV---------------IE-----------QTLNK-------TVP-EGSQAAEY 266 (296)
T ss_pred HHHHHHcccE--EEEeCCeEEEeeCHHH---------------HH-----------HhcCC-------cCC-cccccHHH
Confidence 888665 887 8899999998766632 00 11121 111 22447888
Q ss_pred HHHcCCceeecCCCCccc
Q 023631 250 ALEYGLIDRIIRPPRIKE 267 (279)
Q Consensus 250 AleyGLID~I~~~~~~~~ 267 (279)
.++.|+||.|+...+.++
T Consensus 267 l~~~G~vD~iV~r~~lr~ 284 (296)
T CHL00174 267 LFDKGLFDLIVPRNLLKG 284 (296)
T ss_pred HHhCcCceEEEcHHHHHH
Confidence 888999999988766654
No 140
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=94.81 E-value=0.22 Score=45.37 Aligned_cols=112 Identities=19% Similarity=0.197 Sum_probs=68.8
Q ss_pred ccCCCCcEEEEEeCCC---CChhHHHHHH----------HHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCce
Q 023631 123 SVDDSKRVYMYINGPG---GDVTPTLAIY----------DTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSR 189 (279)
Q Consensus 123 ~~d~~k~I~L~INSPG---GsV~aglaIy----------d~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~ 189 (279)
.+.+..+|.+.|++|| |.-..-+.|+ +.-+...-||++.+.|.|.|+|.+ +.+-.-...+++|.+.
T Consensus 60 ~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFL-A~GlqA~rl~AL~ga~ 138 (234)
T PF06833_consen 60 RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFL-AHGLQANRLIALPGAM 138 (234)
T ss_pred hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHH-HHHHHhcchhcCCCCe
Confidence 3456789999999999 4444444444 444555679999999999998744 4432222389999544
Q ss_pred EEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee--CHHHHHHcCCceeecC
Q 023631 190 IALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF--GSQEALEYGLIDRIIR 261 (279)
Q Consensus 190 imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l--sa~EAleyGLID~I~~ 261 (279)
+ |-.. .+..++-|.+|.|++++....--.| ..+-=..+|.++++.+
T Consensus 139 i--~vM~------------------------~~s~ARVTk~~ve~Le~la~s~PvfA~gi~ny~~lG~l~~l~~ 186 (234)
T PF06833_consen 139 I--HVMG------------------------KPSAARVTKRPVEELEELAKSVPVFAPGIENYAKLGALDELWD 186 (234)
T ss_pred e--ecCC------------------------hHHhHHHhhcCHHHHHHHhhcCCCcCCCHHHHHHhccHHHHhc
Confidence 3 3221 1122444666777777665433333 3344456677776665
No 141
>KOG1682 consensus Enoyl-CoA isomerase [Lipid transport and metabolism]
Probab=94.77 E-value=0.09 Score=47.29 Aligned_cols=103 Identities=17% Similarity=0.176 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHH
Q 023631 146 AIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELS 225 (279)
Q Consensus 146 aIyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya 225 (279)
.+.+-|+.++.||++-+.|.|+-+|.-+.++++. -++..+|.|..--...|..-+..-+. +.+.--+-+..|.
T Consensus 116 dvmn~Irn~pVPVia~VNG~AaAAGcQLVaSCD~--vVa~k~SkF~tPG~~vGlFCSTPGvA-----laRavpRkva~~M 188 (287)
T KOG1682|consen 116 DVMNDIRNLPVPVIAKVNGYAAAAGCQLVASCDM--VVATKNSKFSTPGAGVGLFCSTPGVA-----LARAVPRKVAAYM 188 (287)
T ss_pred HHHHHHhcCCCceEEEecchhhhccceEEEeeeE--EEEecCccccCCCCceeeEecCcchh-----HhhhcchhHHHHH
Confidence 4456678888999999999999999999998886 66677776643222112111111111 1111111122233
Q ss_pred HHhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCCcccc
Q 023631 226 RKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKED 268 (279)
Q Consensus 226 ~~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~~~~~ 268 (279)
-.| ..-.+++||+-.||+.+++...+.+.+
T Consensus 189 L~T-------------g~Pi~~eeAl~sGlvskvVp~~el~~e 218 (287)
T KOG1682|consen 189 LMT-------------GLPITGEEALISGLVSKVVPAEELDKE 218 (287)
T ss_pred HHh-------------CCCCchHHHHHhhhhhhcCCHHHHHHH
Confidence 334 445689999999999999887776544
No 142
>COG0447 MenB Dihydroxynaphthoic acid synthase [Coenzyme metabolism]
Probab=94.59 E-value=0.084 Score=47.89 Aligned_cols=134 Identities=19% Similarity=0.284 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHhhcccCCCCcEEEEEeCC-------CCC----------h-------hHHHHHHHHHHhcCCCeEEEEc
Q 023631 108 EEFSNQILATMLYLDSVDDSKRVYMYINGP-------GGD----------V-------TPTLAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 108 ~~~a~~ii~~Ll~L~~~d~~k~I~L~INSP-------GGs----------V-------~aglaIyd~i~~~~~pV~Tv~~ 163 (279)
+.+...++..+.....+.+..-|.|-=|+- ||+ + ...+.+-..|+.+++||++.+.
T Consensus 45 P~TV~Em~~Af~~Ar~d~~vGvi~lTG~~~G~~AFCsGGDQ~vRg~~~gY~~d~~~~rLnvLdlQrlIR~~PKpViA~V~ 124 (282)
T COG0447 45 PKTVDEMIDAFADARDDPNVGVILLTGNGDGDKAFCSGGDQKVRGDSGGYVDDDGIPRLNVLDLQRLIRTMPKPVIAMVA 124 (282)
T ss_pred CccHHHHHHHHHhhhcCCCccEEEEecCCCCCeeeecCCCceecccCCCccCCccCcccchhhHHHHHHhCCcceEEEEe
Confidence 456777888877665555455555544533 332 1 1235566788999999999999
Q ss_pred cccchHHHHHHcCCCCCcEEEccCceEEEecCcccc----CCChhhHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHhH
Q 023631 164 GFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAA----RGQADDIRNEADELLRVRDYIFKELSRKTGQP-FEKITKD 238 (279)
Q Consensus 164 G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~----~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~-~e~I~~~ 238 (279)
|.|..+|-++-.-|+- -+|..|++|.=..|..+. .|.. .| ++..|+. ..+|. .
T Consensus 125 G~AiGGGhvlhvvCDL--TiAa~nA~FgQTgp~VGSFD~G~Gs~--------yl-----------ar~VGqKkArEIw-f 182 (282)
T COG0447 125 GYAIGGGHVLHVVCDL--TIAADNAIFGQTGPKVGSFDGGYGSS--------YL-----------ARIVGQKKAREIW-F 182 (282)
T ss_pred eEeccCccEEEEEeee--eeehhcchhcCCCCCcccccCcccHH--------HH-----------HHHhhhhhhHHhh-h
Confidence 9999999999998987 688889998877776542 2221 11 1112221 12222 2
Q ss_pred hcCCceeCHHHHHHcCCceeecCCCCc
Q 023631 239 LSRIKRFGSQEALEYGLIDRIIRPPRI 265 (279)
Q Consensus 239 ~~rd~~lsa~EAleyGLID~I~~~~~~ 265 (279)
+ -+.++|+||++.|+|..|+.-.+.
T Consensus 183 L--cR~Y~A~eal~MGlVN~Vvp~~~L 207 (282)
T COG0447 183 L--CRQYDAEEALDMGLVNTVVPHADL 207 (282)
T ss_pred h--hhhccHHHHHhcCceeeeccHHHH
Confidence 2 234599999999999999876543
No 143
>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain
Probab=92.60 E-value=0.85 Score=46.77 Aligned_cols=90 Identities=11% Similarity=0.049 Sum_probs=64.1
Q ss_pred EccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChh---H------H-HHHHHH-HHhc--CCCeEEEEccccch
Q 023631 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVT---P------T-LAIYDT-MQSL--KSPVGTHCVGFAYH 168 (279)
Q Consensus 102 L~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~---a------g-laIyd~-i~~~--~~pV~Tv~~G~AAS 168 (279)
++|.+++...+.++..+..... . .-||+..++|+|+.+. . + -.|+.. .+.+ ..|.++++.|-|++
T Consensus 141 ~GGs~g~~~~~Ki~r~~elA~~-~-~lPlV~l~DSgGarl~~q~e~~~~~~~~g~if~~~~~ls~~~VP~Isvv~G~~~g 218 (569)
T PLN02820 141 KGGTYYPITVKKHLRAQEIAAQ-C-RLPCIYLVDSGGANLPRQAEVFPDRDHFGRIFYNQARMSSAGIPQIALVLGSCTA 218 (569)
T ss_pred cCCCCCHHHHHHHHHHHHHHHH-c-CCCEEEEEeCCCcCCcccccccchHhHHHHHHHHHHHHhCCCCCEEEEEeCCCCh
Confidence 4566777788888776654433 2 4799999999998762 1 1 134443 3333 37999999999999
Q ss_pred HHHHHHcCCCCCcEEEc-cCceEEEecC
Q 023631 169 LAGFLLAGGEKGNRSAM-PLSRIALDSP 195 (279)
Q Consensus 169 ~aslIl~aG~kg~R~a~-P~S~imiHqp 195 (279)
+++++.+.++. .++. |++.+.+--|
T Consensus 219 GgAy~~a~~D~--vim~~~~a~i~~aGP 244 (569)
T PLN02820 219 GGAYVPAMADE--SVIVKGNGTIFLAGP 244 (569)
T ss_pred HHHHHHHhCCc--eEEecCCcEEEecCH
Confidence 99999887776 4554 5788888777
No 144
>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.
Probab=89.22 E-value=2.5 Score=42.75 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=67.3
Q ss_pred EEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHH-------HHH-HHHHh-cCCCeEEEEccccchHHH
Q 023631 101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL-------AIY-DTMQS-LKSPVGTHCVGFAYHLAG 171 (279)
Q Consensus 101 fL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~agl-------aIy-d~i~~-~~~pV~Tv~~G~AAS~as 171 (279)
|++|.+.......++..+..... . .-+++.+++|.|+.+..+. .++ ...+. -..|+++++.|-|+.+++
T Consensus 93 ~~gGS~g~~~~~K~~r~~e~A~~-~-~lPlV~l~dSgGarm~eg~~~l~~~~~~~~~~~~~s~~iP~Isvv~G~~~GG~a 170 (512)
T TIGR01117 93 VMGGSLGEMHAAKIVKIMDLAMK-M-GAPVVGLNDSGGARIQEAVDALKGYGDIFYRNTIASGVVPQISAIMGPCAGGAV 170 (512)
T ss_pred ccccCCCHHHHHHHHHHHHHHHH-c-CCCEEEEecCCCCCccccchhhhhHHHHHHHHHHHcCCCcEEEEEecCCCcHHH
Confidence 45677777778888876654433 3 4699999999998864432 223 22222 236999999999999999
Q ss_pred HHHcCCCCCcEEEccC-ceEEEecCc
Q 023631 172 FLLAGGEKGNRSAMPL-SRIALDSPA 196 (279)
Q Consensus 172 lIl~aG~kg~R~a~P~-S~imiHqp~ 196 (279)
+.++.++. .+|.|+ +.+.+--|.
T Consensus 171 ~~~al~D~--vim~~~~a~i~~aGP~ 194 (512)
T TIGR01117 171 YSPALTDF--IYMVDNTSQMFITGPQ 194 (512)
T ss_pred HHHHhcCc--eEEeccceEEEecChH
Confidence 99999998 999997 468777663
No 145
>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]. The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....
Probab=84.55 E-value=1.6 Score=43.88 Aligned_cols=92 Identities=14% Similarity=0.173 Sum_probs=65.9
Q ss_pred EEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCC--ChhHHH-------HHHHHHHh-c-CCCeEEEEccccchH
Q 023631 101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGG--DVTPTL-------AIYDTMQS-L-KSPVGTHCVGFAYHL 169 (279)
Q Consensus 101 fL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGG--sV~agl-------aIyd~i~~-~-~~pV~Tv~~G~AAS~ 169 (279)
|++|.+.+.....+...+..... . .-+++.+++|.|+ .+..++ .++..+.. + ..|+++++.|-|..+
T Consensus 68 ~~gGs~g~~~~~Ki~ra~~~A~~-~-~~P~v~l~dsgGa~~r~~eg~~~l~~~g~i~~~~~~~~~~iP~I~vv~G~~~Gg 145 (493)
T PF01039_consen 68 VLGGSVGEVHGEKIARAIELALE-N-GLPLVYLVDSGGAFLRMQEGVESLMGMGRIFRAIARLSGGIPQISVVTGPCTGG 145 (493)
T ss_dssp SGGGTBSHHHHHHHHHHHHHHHH-H-TEEEEEEEEESSBCGGGGGHHHHHHHHHHHHHHHHHHHTTS-EEEEEESEEEGG
T ss_pred eecCCCCcccceeeehHHHHHHH-c-CCCcEEeccccccccccchhhhhhhhhHHHHHHHHHHhcCCCeEEEEccccccc
Confidence 35777888888888776654433 3 4688888999999 433332 23322222 2 479999999999999
Q ss_pred HHHHHcCCCCCcEEEccC-ceEEEecCc
Q 023631 170 AGFLLAGGEKGNRSAMPL-SRIALDSPA 196 (279)
Q Consensus 170 aslIl~aG~kg~R~a~P~-S~imiHqp~ 196 (279)
+++++..++. .++.+. +.+.+.-|.
T Consensus 146 ~A~~~~~~d~--~i~~~~~a~i~l~GP~ 171 (493)
T PF01039_consen 146 GAYLAALSDF--VIMVKGTARIFLAGPR 171 (493)
T ss_dssp GGHHHHHSSE--EEEETTTCEEESSTHH
T ss_pred hhhcccccCc--cccCccceEEEecccc
Confidence 9999988887 888887 999987774
No 146
>cd06567 Peptidase_S41 C-terminal processing peptidase family S41. Peptidase family S41 (C-terminal processing peptidase or CTPase family) contains very different subfamilies; it includes photosystem II D1 C-terminal processing protease (CTPase), interphotoreceptor retinoid-binding protein IRBP and tricorn protease (TRI). CTPase and TRI both contain the PDZ domain while IRBP, although being very similar to the tail-specific protease domain, lacks the PDZ insertion domain and hydrolytic activity. These serine proteases have distinctly different active sites: in CTPase, the active site consists of a serine/lysine catalytic dyad while in tricorn core protease, it is a tetrad (serine, histidine, serine, glutamate). CPases with different substrate specificities in different species include processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and others such as tricorn pr
Probab=80.18 E-value=11 Score=33.17 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=55.4
Q ss_pred EEEccccChhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh-------------------------
Q 023631 100 IFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS------------------------- 153 (279)
Q Consensus 100 IfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~------------------------- 153 (279)
|.|..-..+...+.+.+.+..++. +.+.++|-+ +-|||++..+..|.+.+-.
T Consensus 64 i~i~~f~~~~~~~~~~~~~~~~~~--~~~~lIiDLR~N~GG~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (224)
T cd06567 64 IRIPSFSAESTAEELREALAELKK--GVKGLILDLRNNPGGLLSAAVELASLFLPKGKIVVTTRRRGGNETEYVAPGGGS 141 (224)
T ss_pred EEECccCCcchHHHHHHHHHHHHc--CCCEEEEEcCCCCCccHHHHHHHHHHhcCCCcEEEEEecCCCceeEEecCCCCc
Confidence 444443335556666666666654 478899988 7799999999888877753
Q ss_pred -cCCCeEEEEccccchHHHHHHcCCC
Q 023631 154 -LKSPVGTHCVGFAYHLAGFLLAGGE 178 (279)
Q Consensus 154 -~~~pV~Tv~~G~AAS~aslIl~aG~ 178 (279)
...||+.++.+..+|+|-+++.+=.
T Consensus 142 ~~~~pv~vL~~~~taSaaE~~a~~lk 167 (224)
T cd06567 142 LYDGPLVVLVNEGSASASEIFAGALQ 167 (224)
T ss_pred ccCCCEEEEECCCCccHHHHHHHHHH
Confidence 2358999999999999988877543
No 147
>KOG0016 consensus Enoyl-CoA hydratase/isomerase [Lipid transport and metabolism]
Probab=80.13 E-value=26 Score=32.60 Aligned_cols=99 Identities=19% Similarity=0.155 Sum_probs=58.5
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 023631 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSR 226 (279)
Q Consensus 147 Iyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~ 226 (279)
..++.-..++|+++.+.|-|-..|+.|+.-+|- -++... ..+|.|.... |+..|--... .+-+ .
T Consensus 99 ~v~~fi~f~Kplia~vNGPAIGlgasil~lcD~--V~A~Dk--a~F~TPfa~l-Gq~PEG~Ss~-t~p~---i------- 162 (266)
T KOG0016|consen 99 FVNTFINFPKPLVALVNGPAIGLGASILPLCDY--VWASDK--AWFQTPFAKL-GQSPEGCSSV-TLPK---I------- 162 (266)
T ss_pred HHHHHhcCCCCEEEEecCCccchhhHHhhhhhe--EEeccc--eEEeccchhc-CCCCCcceee-eehH---h-------
Confidence 457777788999999999999999999998885 455533 3446665321 1111100000 0000 0
Q ss_pred HhCCCHHHHHhHhcCCceeCHHHHHHcCCceeecCCCC
Q 023631 227 KTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPR 264 (279)
Q Consensus 227 ~tG~~~e~I~~~~~rd~~lsa~EAleyGLID~I~~~~~ 264 (279)
+..+...+++=-..-|+|+||.++|||++|.....
T Consensus 163 ---mG~~~A~E~ll~~~kltA~Ea~~~glVskif~~~t 197 (266)
T KOG0016|consen 163 ---MGSASANEMLLFGEKLTAQEACEKGLVSKIFPAET 197 (266)
T ss_pred ---hchhhHHHHHHhCCcccHHHHHhcCchhhhcChHH
Confidence 01111122222245679999999999999987643
No 148
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=79.51 E-value=10 Score=35.57 Aligned_cols=125 Identities=17% Similarity=0.210 Sum_probs=76.9
Q ss_pred EEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHH----------HHHHHHHhcCCCeEEEEc-----cc
Q 023631 101 FIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTL----------AIYDTMQSLKSPVGTHCV-----GF 165 (279)
Q Consensus 101 fL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~agl----------aIyd~i~~~~~pV~Tv~~-----G~ 165 (279)
|++|-+..-+.+.|++.+.+.-.+ ..+++++--|-|--.-.|+ +-...++....|+++|-. |+
T Consensus 133 FmgGSmGsVvGeki~ra~E~A~e~--k~P~v~f~aSGGARMQEg~lSLMQMaktsaAl~~l~ea~lpyIsVLt~PTtGGV 210 (294)
T COG0777 133 FMGGSMGSVVGEKITRAIERAIED--KLPLVLFSASGGARMQEGILSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV 210 (294)
T ss_pred ccccchhHHHHHHHHHHHHHHHHh--CCCEEEEecCcchhHhHHHHHHHHHHHHHHHHHHHHhcCCceEEEecCCCccch
Confidence 455555566788888888765433 3677777666665544432 112333444568887765 55
Q ss_pred cchHHHHHHcCCCCCcEEEccCceEEEecCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhHhcCCcee
Q 023631 166 AYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRF 245 (279)
Q Consensus 166 AAS~aslIl~aG~kg~R~a~P~S~imiHqp~~~~~G~a~di~~~a~el~~l~~~i~~~ya~~tG~~~e~I~~~~~rd~~l 245 (279)
-||-| +-|+. .++-|.+.|++.-|.. +++. |.+.+- |-|=
T Consensus 211 sASfA----~lGDi--~iAEP~AlIGFAGpRV---------------IEQT------------------ire~LP-egfQ 250 (294)
T COG0777 211 SASFA----MLGDI--IIAEPGALIGFAGPRV---------------IEQT------------------IREKLP-EGFQ 250 (294)
T ss_pred hHhHH----hccCe--eecCcccccccCcchh---------------hhhh------------------hcccCC-cchh
Confidence 55554 34776 8999999998776643 1110 111121 2244
Q ss_pred CHHHHHHcCCceeecCCCCccc
Q 023631 246 GSQEALEYGLIDRIIRPPRIKE 267 (279)
Q Consensus 246 sa~EAleyGLID~I~~~~~~~~ 267 (279)
+++--++.|+||.|+...+.++
T Consensus 251 ~aEfLlehG~iD~iv~R~elr~ 272 (294)
T COG0777 251 TAEFLLEHGMIDMIVHRDELRT 272 (294)
T ss_pred hHHHHHHcCCceeeecHHHHHH
Confidence 7888889999999988766554
No 149
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=78.44 E-value=3.6 Score=35.30 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=29.1
Q ss_pred EEEEccccChhHHH---HHHHHHHhhcccCCCCcEEEEEeCCCCChh
Q 023631 99 VIFIGQNIDEEFSN---QILATMLYLDSVDDSKRVYMYINGPGGDVT 142 (279)
Q Consensus 99 iIfL~g~I~~~~a~---~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~ 142 (279)
+|-+.|.|+..-++ .-+..++... .+.+.+.+.+-||||.|.
T Consensus 102 VldF~Gdi~A~~v~~LReeisail~~a--~~~DeV~~rLES~GG~Vh 146 (155)
T PF08496_consen 102 VLDFKGDIKASEVESLREEISAILSVA--TPEDEVLVRLESPGGMVH 146 (155)
T ss_pred EEecCCCccHHHHHHHHHHHHHHHHhC--CCCCeEEEEEecCCceee
Confidence 46689999875433 3344455433 445799999999999875
No 150
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=71.65 E-value=15 Score=34.81 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=55.9
Q ss_pred EEEccccChhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh------------------------c
Q 023631 100 IFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS------------------------L 154 (279)
Q Consensus 100 IfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~------------------------~ 154 (279)
|-|.. .+....+.+.+.|..|+.. +.+.++|-+ +-+||++..+..+.+.+-. .
T Consensus 156 i~i~~-f~~~~~~~~~~~l~~l~~~-~~~~lIiDLR~N~GG~~~~a~~~a~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~ 233 (334)
T TIGR00225 156 IRISS-FSEHTTEDVKKALDKLEKK-NAKGYILDLRGNPGGLLQSAVDISRLFITKGPIVQTKDRNGSKRHYKANGRQPY 233 (334)
T ss_pred EEEEe-cccchHHHHHHHHHHHHhc-cCceEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEEcCCCcceEEecCCCccC
Confidence 33444 3445567777777777654 478899998 8899999999888876521 2
Q ss_pred CCCeEEEEccccchHHHHHHcCCC
Q 023631 155 KSPVGTHCVGFAYHLAGFLLAGGE 178 (279)
Q Consensus 155 ~~pV~Tv~~G~AAS~aslIl~aG~ 178 (279)
..||+.++.+..||+|-+++.+-.
T Consensus 234 ~~pv~vLvn~~TaSaaE~~a~~l~ 257 (334)
T TIGR00225 234 NLPLVVLVNRGSASASEIFAGALQ 257 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHH
Confidence 358888888888998888877543
No 151
>KOG1684 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]
Probab=70.88 E-value=16 Score=35.57 Aligned_cols=100 Identities=19% Similarity=0.154 Sum_probs=69.6
Q ss_pred cCcEEEEccc-----cChhHHHHHHHHHHhhcccCCCCcEEEEEe-----CCCCChhHHH-------------------H
Q 023631 96 RERVIFIGQN-----IDEEFSNQILATMLYLDSVDDSKRVYMYIN-----GPGGDVTPTL-------------------A 146 (279)
Q Consensus 96 ~~riIfL~g~-----I~~~~a~~ii~~Ll~L~~~d~~k~I~L~IN-----SPGGsV~agl-------------------a 146 (279)
..|+|.|+-| ++-++...+...|..++..+..+-|+|-=+ |-||+|.+.- .
T Consensus 47 ~~r~itLNRPKaLNAlnleMv~~~~~~L~~we~s~~~k~vIlkgs~~raFCAGgDI~~~ae~~~d~~~~~~~~fF~~eYs 126 (401)
T KOG1684|consen 47 CARVITLNRPKALNALNLEMVLSIYPKLVEWEKSPLVKLVILKGSGGRAFCAGGDIKAVAESIKDKETPEVKKFFTEEYS 126 (401)
T ss_pred ceeEEEecCchhhccccHHHHHHHHHHHHhhccCCCceEEEEecCCCceeecCccHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 3488888876 777888888889988887765665555444 4578864331 2
Q ss_pred HHHHHHhcCCCeEEEEccccchHHHHHHcCCCC-----CcEEEccCceEEEecC
Q 023631 147 IYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEK-----GNRSAMPLSRIALDSP 195 (279)
Q Consensus 147 Iyd~i~~~~~pV~Tv~~G~AAS~aslIl~aG~k-----g~R~a~P~S~imiHqp 195 (279)
+...|-.+.+|++++..|+-...|.=|...|.- --.+|+|..-|++|.-
T Consensus 127 l~~~igtY~KP~ValmdGITMGgG~GLS~hg~fRVATerT~~AmPEt~IGlfPD 180 (401)
T KOG1684|consen 127 LNHLIGTYLKPYVALMDGITMGGGVGLSVHGRFRVATERTVFAMPETGIGLFPD 180 (401)
T ss_pred HHHHHHHhcCceEEEeeceeecCCcceeecceeEEeeccceecccccccccccC
Confidence 334566677999999999999999888887654 0134556556666553
No 152
>cd07560 Peptidase_S41_CPP C-terminal processing peptidase; serine protease family S41. The C-terminal processing peptidase (CPP, EC 3.4.21.102) also known as tail-specific protease (tsp), the photosystem II D1 C-terminal processing protease (D1P), and other related S41 protease family members are present in this CD. CPP is synthesized as a precursor form with a carboxyl-terminal extension. It specifically recognizes a C-terminal tripeptide, Xaa-Yaa-Zaa, in which Xaa is preferably Ala or Leu, Yaa is preferably Ala or Tyr and Zaa is preferably Ala, but then cleaves at a variable distance from the C-terminus. The C-terminal carboxylate group is essential, and proteins where this group is amidated are not substrates. This family of proteases contains the PDZ domain that promotes protein-protein interactions and is important for substrate recognition. The active site consists of a serine/lysine catalytic dyad. The bacterial CCP-1 is believed to be important for the degradation of incorrectl
Probab=70.35 E-value=20 Score=31.78 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh------------------------cCCCeEEEEc
Q 023631 109 EFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS------------------------LKSPVGTHCV 163 (279)
Q Consensus 109 ~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~------------------------~~~pV~Tv~~ 163 (279)
...+++.+.|..+...+ .+.++|-+ +.+||++..+..|.+.+-. ...||+.++.
T Consensus 61 ~~~~~~~~~l~~~~~~~-~~~lIlDLR~N~GG~~~~~~~i~~~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~pvvVLvn 139 (211)
T cd07560 61 NTAEELKKALKELKKQG-MKGLILDLRNNPGGLLDEAVEIADLFLPGGPIVSTKGRNGKREAYASDDGGLYDGPLVVLVN 139 (211)
T ss_pred hhHHHHHHHHHHHHhcc-CceEEEEcCCCCCCCHHHHHHHHHHhcCCCeEEEEEecCCceEEEecCCCccCCCCEEEEeC
Confidence 34556666666555443 67788887 6688888888777664432 3468888888
Q ss_pred cccchHHHHHHcCCC
Q 023631 164 GFAYHLAGFLLAGGE 178 (279)
Q Consensus 164 G~AAS~aslIl~aG~ 178 (279)
+..+|+|-+++.+=.
T Consensus 140 ~~TaSaaE~~a~~lk 154 (211)
T cd07560 140 GGSASASEIVAGALQ 154 (211)
T ss_pred CCcccHHHHHHHHHh
Confidence 889999888777543
No 153
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=68.37 E-value=15 Score=36.05 Aligned_cols=70 Identities=11% Similarity=0.135 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh-------------------------cCCCeEEE
Q 023631 108 EEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS-------------------------LKSPVGTH 161 (279)
Q Consensus 108 ~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~-------------------------~~~pV~Tv 161 (279)
+...+.+-..+..|+++. .+.++|-+ |-|||.+.++..|.+.... .+.|++++
T Consensus 215 ~~~~~~~~~al~~L~~~~-~~GlIlDLR~N~GG~L~~av~i~~~f~~~g~iv~~~~r~g~~~~~~~~~~~~~~~~PlvvL 293 (406)
T COG0793 215 EGTYEDLEKALDELKKQG-AKGLILDLRNNPGGLLSQAVKLAGLFLPSGPIVSTRGRNGKVNVYFSASGEALYDGPLVVL 293 (406)
T ss_pred cchHHHHHHHHHHHHhcC-CcEEEEEeCCCCCccHHHHHHHHHcccCCCcEEEEecCCCceeeccccccccCCCCCEEEE
Confidence 445666777777888766 89999999 7799999999999987762 13589999
Q ss_pred EccccchHHHHHHcCCC
Q 023631 162 CVGFAYHLAGFLLAGGE 178 (279)
Q Consensus 162 ~~G~AAS~aslIl~aG~ 178 (279)
+.+-.||++=+++.+=.
T Consensus 294 vn~~SASAsEI~agalq 310 (406)
T COG0793 294 VNEGSASASEIFAGALQ 310 (406)
T ss_pred ECCCCccHHHHHHHHHH
Confidence 99999999988877533
No 154
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=67.32 E-value=20 Score=34.80 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=52.7
Q ss_pred ChhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh--------------------------cCCCeE
Q 023631 107 DEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS--------------------------LKSPVG 159 (279)
Q Consensus 107 ~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~--------------------------~~~pV~ 159 (279)
+....+.+.+.|..++.++ .+.++|-+ |-|||.+..+..|.+.+.. ...|++
T Consensus 205 ~~~~~~~~~~~l~~l~~~~-~~glIlDLR~N~GG~~~~a~~ia~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pvv 283 (389)
T PLN00049 205 NQNASSAVKEAIETLRANG-VDAFVLDLRDNSGGLFPAGIEIAKLWLDKGVIVYIADSRGVRDIYDADGSSAIATSEPLA 283 (389)
T ss_pred cchhHHHHHHHHHHHHHCC-CCEEEEEcCCCCCCCHHHHHHHHHHhcCCCcEEEEecCCCceeEEecCCCccccCCCCEE
Confidence 4456777778787776554 78899988 7899999999888877621 124888
Q ss_pred EEEccccchHHHHHHcC
Q 023631 160 THCVGFAYHLAGFLLAG 176 (279)
Q Consensus 160 Tv~~G~AAS~aslIl~a 176 (279)
.++.+..||++-+++.+
T Consensus 284 VLvn~~TaSasEi~a~a 300 (389)
T PLN00049 284 VLVNKGTASASEILAGA 300 (389)
T ss_pred EEECCCCccHHHHHHHH
Confidence 88889999998887764
No 155
>PRK11186 carboxy-terminal protease; Provisional
Probab=66.89 E-value=18 Score=38.01 Aligned_cols=68 Identities=10% Similarity=0.210 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHH-------------------------hcCCCeEEE
Q 023631 108 EEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQ-------------------------SLKSPVGTH 161 (279)
Q Consensus 108 ~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~-------------------------~~~~pV~Tv 161 (279)
....+.+...|..|..+ ..+.++|-+ |-|||.+..+..|.+.+- ....|++..
T Consensus 365 ~~~~~d~~~~l~~l~~~-~v~gLIlDLR~NgGG~l~~a~~la~lFi~~g~vv~~~~~~g~~~~~~~~~~~~~~~gPlvVL 443 (667)
T PRK11186 365 VGLTDDVKKQLQKLEKQ-NVSGIIIDLRGNGGGALTEAVSLSGLFIPSGPVVQVRDNNGRVRVDSDTDGVVYYKGPLVVL 443 (667)
T ss_pred cchHHHHHHHHHHHHHC-CCCEEEEEcCCCCCCcHHHHHHHHHHHhcCCceEEEecCCCceeccccCCcccccCCCEEEE
Confidence 34567777777777664 478999999 889999999998887642 113489999
Q ss_pred EccccchHHHHHHcC
Q 023631 162 CVGFAYHLAGFLLAG 176 (279)
Q Consensus 162 ~~G~AAS~aslIl~a 176 (279)
+.+..||++-+++.+
T Consensus 444 VN~~SASASEIfA~a 458 (667)
T PRK11186 444 VDRYSASASEIFAAA 458 (667)
T ss_pred eCCCCccHHHHHHHH
Confidence 999999999888874
No 156
>cd07561 Peptidase_S41_CPP_like C-terminal processing peptidase-like; serine protease family S41. Bacterial protease homologs of the S41 family related to C-terminal processing peptidase (CPP). CPP-1 is believed to be important for the degradation of incorrectly synthesized proteins as well as protection from thermal and osmotic stresses. CPP is synthesized with an extension on its carboxyl-terminus and specifically recognizes a C-terminal tripeptide, but cleaves at variable distance from the C-terminus. The CPP active site consists of a serine/lysine catalytic dyad. Conservation of these residues is seen in the CPP-like proteins of this group. CPP proteins contain a PDZ domain that promotes protein-protein interactions and is important for substrate recognition however, most of CPP-like proteins only have an internal fragment or lack the PDZ domain.
Probab=64.10 E-value=29 Score=31.84 Aligned_cols=45 Identities=7% Similarity=0.173 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh
Q 023631 108 EEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS 153 (279)
Q Consensus 108 ~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~ 153 (279)
+...+.+.+.+..+++++ .+.++|-+ +-|||.+..+..|.+.+..
T Consensus 76 ~~~~~~l~~a~~~l~~~~-~~~LIlDLR~N~GG~~~~a~~las~f~~ 121 (256)
T cd07561 76 SGYDDELNQAFAEFKAQG-VTELVLDLRYNGGGLVSSANLLASLLAP 121 (256)
T ss_pred cchHHHHHHHHHHHHHcC-CCeEEEEeCCCCCccHHHHHHHHHHhcC
Confidence 345677777777777654 67888888 7799999999999887765
No 157
>KOG0540 consensus 3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta [Amino acid transport and metabolism; Lipid transport and metabolism]
Probab=58.32 E-value=88 Score=31.60 Aligned_cols=84 Identities=19% Similarity=0.162 Sum_probs=55.1
Q ss_pred cccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCC----------CChhHHHHHHHHHHhcCCCeEEEEccccchHHHHH
Q 023631 104 QNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPG----------GDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFL 173 (279)
Q Consensus 104 g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPG----------GsV~aglaIyd~i~~~~~pV~Tv~~G~AAS~aslI 173 (279)
|-+..+++.....-+.+-.+ ..-|+.+..|+|| |-.-.|-.+.++.-.-+.|-+|+..|-+.. |.+-
T Consensus 363 G~L~s~sa~KgarfIe~c~q--~~IPLi~l~ni~Gfm~g~~~e~~gIaK~gAklv~a~a~akvpkITiit~~syG-G~y~ 439 (536)
T KOG0540|consen 363 GVLFSESAVKGARFIELCDQ--RNIPLIFLQNITGFMVGRAAEAGGIAKHGAKLVYAVACAKVPKITIITGGSYG-GNYA 439 (536)
T ss_pred cccchhhhhhhHHHHHHHHh--cCCcEEEEEccCCccccchhhhhchhhhhhhhhhhhhhccCceEEEEecCccC-Cccc
Confidence 44555566555554443332 2468999999998 223444556677777778999999988888 4444
Q ss_pred Hc----CCCCCcEEEccCceEEE
Q 023631 174 LA----GGEKGNRSAMPLSRIAL 192 (279)
Q Consensus 174 l~----aG~kg~R~a~P~S~imi 192 (279)
.+ .|+- .|+-|+++|.+
T Consensus 440 m~sr~~~gd~--~yawP~A~Iav 460 (536)
T KOG0540|consen 440 MCSRGYSGDI--NYAWPNARIAV 460 (536)
T ss_pred ccccccCCce--eEEcccceeee
Confidence 33 3444 78888988854
No 158
>COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]
Probab=55.54 E-value=36 Score=32.16 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=53.1
Q ss_pred EEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHH-HHHHhcCCCeEEEEccccchHHHHHHcCC
Q 023631 99 VIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIY-DTMQSLKSPVGTHCVGFAYHLAGFLLAGG 177 (279)
Q Consensus 99 iIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIy-d~i~~~~~pV~Tv~~G~AAS~aslIl~aG 177 (279)
.|=|+|. +-.-..+++.|..++. |+.....+.|.=+||.-.+--+-| .. +..++||+++..|..|
T Consensus 175 ~IGiGGD--pi~Gt~fid~L~~fe~-Dp~T~~ivmiGEiGG~aEe~AA~~i~~-~~~~KPVVa~iaG~ta---------- 240 (293)
T COG0074 175 AIGIGGD--PIPGTSFIDALEMFEA-DPETEAIVMIGEIGGPAEEEAAEYIKA-NATRKPVVAYIAGRTA---------- 240 (293)
T ss_pred EEEeCCC--CcCCccHHHHHHHHhc-CccccEEEEEecCCCcHHHHHHHHHHH-hccCCCEEEEEeccCC----------
Confidence 3556664 2223345666666654 667788889999999875543322 22 3455999999999888
Q ss_pred CCCcEEEccCceEE
Q 023631 178 EKGNRSAMPLSRIA 191 (279)
Q Consensus 178 ~kg~R~a~P~S~im 191 (279)
.+|+|+..-.|.+.
T Consensus 241 p~gkrmGhaGaiv~ 254 (293)
T COG0074 241 PEGKRMGHAGAIVS 254 (293)
T ss_pred Cccchhhhhhhhhc
Confidence 77788877776663
No 159
>smart00245 TSPc tail specific protease. tail specific protease
Probab=55.34 E-value=60 Score=28.05 Aligned_cols=71 Identities=13% Similarity=0.159 Sum_probs=46.6
Q ss_pred cChhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHhc-------------------------CCCeE
Q 023631 106 IDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQSL-------------------------KSPVG 159 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~~-------------------------~~pV~ 159 (279)
.+....+.+...+.+|... +.+.++|-+ +.+||.+..+..+.+.+..- ..||+
T Consensus 38 f~~~~~~~~~~~~~~l~~~-~~~~lIiDLR~N~GG~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~ 116 (192)
T smart00245 38 FSEHTSNLVEKAWKKLEKT-NVEGLILDLRNNPGGLLSAAIDVSSLFLDKGVIVYTIYRRTGELETYPANLGRKYSKPLV 116 (192)
T ss_pred EChhhHHHHHHHHHHHHhC-CCcEEEEEecCCCCCCHHHHHHHHHHhcCCCcEEEEEecCCCceEEEecCCCcccCCCEE
Confidence 3444455666666666554 367888888 66999999888887766321 13566
Q ss_pred EEEccccchHHHHHHcCC
Q 023631 160 THCVGFAYHLAGFLLAGG 177 (279)
Q Consensus 160 Tv~~G~AAS~aslIl~aG 177 (279)
.++.+..+|+|-+++.+-
T Consensus 117 vL~~~~TaSaaE~~a~~l 134 (192)
T smart00245 117 VLVNEGTASASEIFAGAL 134 (192)
T ss_pred EEECCCCeeHHHHHHHHH
Confidence 666777777776666543
No 160
>PF03572 Peptidase_S41: Peptidase family S41; InterPro: IPR005151 This group of putative serine peptidases belong to the MEROPS peptidase family S41 (C-terminal processing peptidase family, clan SM). The members of this group include: the tricorn protease of bacteria and archaea, C-terminal peptidases with different substrates specificities in different species including processing of D1 protein of the photosystem II reaction centre in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein; and some appear to be responsible for degrading oligopeptides, probably derived from the proteasome. ; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A 3K50_A 3DJA_B 3DPM_B 3DPN_A 3DOR_B 1J7X_A ....
Probab=52.64 E-value=40 Score=27.60 Aligned_cols=67 Identities=13% Similarity=0.158 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh-----------------------------cCCCeE
Q 023631 110 FSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS-----------------------------LKSPVG 159 (279)
Q Consensus 110 ~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~-----------------------------~~~pV~ 159 (279)
..+.+.+.+..+.. ...+.++|-| +.+||+...+..+...+.. ...||+
T Consensus 16 ~~~~~~~~~~~~~~-~~~~~lIIDlR~N~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 94 (169)
T PF03572_consen 16 FDEELDEFLDKLKS-KDTDGLIIDLRGNGGGSDEYAIELLSYLIPKPIIFYYRDRIGSNKKWVSTIKWSTPKNRFNGPVY 94 (169)
T ss_dssp HHHHHHHHHHHHHH-TTSSEEEEE-TTB--BSHHHHHHHHHCHSSSSEEEEEEEEEEEETTCCHEEEECSSTT-SSSEEE
T ss_pred cHHHHHHHHHHHHH-CCCCEEEEEcccCCCcchHHHHHHHhcccCCCcEEEEecccccccccccCCCCccccccCCCCEE
Confidence 34444444444443 4478899999 7789999888887765542 335788
Q ss_pred EEEccccchHHHHHHcCC
Q 023631 160 THCVGFAYHLAGFLLAGG 177 (279)
Q Consensus 160 Tv~~G~AAS~aslIl~aG 177 (279)
.++.+.++|+|-+++.+-
T Consensus 95 vL~~~~t~Saae~fa~~l 112 (169)
T PF03572_consen 95 VLTDENTASAAEIFASAL 112 (169)
T ss_dssp EEE-TTBBTHHHHHHHHH
T ss_pred EEeCCCCCChhHHHHHHH
Confidence 899999999998888754
No 161
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=51.02 E-value=41 Score=31.83 Aligned_cols=65 Identities=11% Similarity=0.104 Sum_probs=50.3
Q ss_pred cEEEEccc--cChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccc
Q 023631 98 RVIFIGQN--IDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 167 (279)
Q Consensus 98 riIfL~g~--I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AA 167 (279)
.+|-++.. .|- .+.+.|.||..++..+.|.||+-+-|-.+..+..+.++.+. ++||+.+..|..+
T Consensus 179 ~~VS~Gn~~~adv----~~~d~L~yl~~Dp~T~~I~ly~E~~G~~~~d~~~f~~aa~~-~KPVV~lk~Grs~ 245 (300)
T PLN00125 179 TCVGIGGDPFNGT----NFVDCLEKFVKDPQTEGIILIGEIGGTAEEDAAAFIKESGT-EKPVVAFIAGLTA 245 (300)
T ss_pred EEEEeCCCCCCCC----CHHHHHHHHhhCCCCcEEEEEeccCCchHHHHHHHHHHhcC-CCCEEEEEecCCC
Confidence 45667777 443 34455777777788999999999988888888888887654 7999999988775
No 162
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=50.87 E-value=23 Score=33.82 Aligned_cols=61 Identities=16% Similarity=0.333 Sum_probs=38.4
Q ss_pred cCcEEEEccccChh---HHHHHHHHHHhhcccCCCCcEEEEEeCCCCCh-------hHHHHHHHHHHhcCCC
Q 023631 96 RERVIFIGQNIDEE---FSNQILATMLYLDSVDDSKRVYMYINGPGGDV-------TPTLAIYDTMQSLKSP 157 (279)
Q Consensus 96 ~~riIfL~g~I~~~---~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV-------~aglaIyd~i~~~~~p 157 (279)
+.++|.+.|+|... .+.++..+|-+- .-.....=.+|+||.|++. .+.-.+||.=+.++-|
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~-hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dP 140 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFV-HFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDP 140 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCc-ccccccccceeecccCccchhccccCCcccCchhHHHhccCC
Confidence 34789999999875 566766666432 2222345568999999875 2334455555555544
No 163
>COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism]
Probab=48.86 E-value=45 Score=34.10 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=64.6
Q ss_pred EccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhH--------HHHHHHHHHhcC-CCeEEEEccccchHHHH
Q 023631 102 IGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTP--------TLAIYDTMQSLK-SPVGTHCVGFAYHLAGF 172 (279)
Q Consensus 102 L~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~a--------glaIyd~i~~~~-~pV~Tv~~G~AAS~asl 172 (279)
.+|...+-....++..+.. ..+. ..+++...+|-|+.+.. |.--|+..+.+. .|.+++++|-|+.+|++
T Consensus 103 ~gGt~~~~~~~Ki~r~~~~-A~~~-g~P~i~l~dsgGari~~~v~~l~g~g~iF~~~a~~Sg~IPqIsvv~G~c~gGgaY 180 (526)
T COG4799 103 KGGTLGEMTAKKILRAQEL-AIEN-GLPVIGLNDSGGARIQEGVPSLAGYGRIFYRNARASGVIPQISVVMGPCAGGGAY 180 (526)
T ss_pred ecccccccccchHHHHHHH-HHHc-CCCEEEEEcccccccccCccccccchHHHHHHHHhccCCCEEEEEEecCcccccc
Confidence 3566666667777765543 3333 45777777777765433 455566666665 69999999999999999
Q ss_pred HHcCCCCCcEEEccC-ceEEEecC
Q 023631 173 LLAGGEKGNRSAMPL-SRIALDSP 195 (279)
Q Consensus 173 Il~aG~kg~R~a~P~-S~imiHqp 195 (279)
+-.-++. .+|..+ +.+.+--|
T Consensus 181 ~pal~D~--~imv~~~~~mfltGP 202 (526)
T COG4799 181 SPALTDF--VIMVRDQSYMFLTGP 202 (526)
T ss_pred cccccce--EEEEcCCccEEeeCH
Confidence 9999998 888888 77777665
No 164
>COG0757 AroQ 3-dehydroquinate dehydratase II [Amino acid transport and metabolism]
Probab=48.15 E-value=51 Score=27.99 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.6
Q ss_pred EEEeCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 023631 132 MYINGPGGDVTPTLAIYDTMQSLKSPVGTHC 162 (279)
Q Consensus 132 L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~ 162 (279)
+.|| ||+.--.+.+|.|+++.+..|++=+-
T Consensus 70 IvIN-pga~THTSvAlrDAi~av~iP~vEVH 99 (146)
T COG0757 70 IVIN-PGAYTHTSVALRDAIAAVSIPVVEVH 99 (146)
T ss_pred EEEc-CccchhhHHHHHHHHHhcCCCEEEEE
Confidence 6666 99999999999999999999988664
No 165
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=45.44 E-value=73 Score=26.52 Aligned_cols=60 Identities=20% Similarity=0.357 Sum_probs=33.8
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcC--CCeEEEEccc
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK--SPVGTHCVGF 165 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~--~pV~Tv~~G~ 165 (279)
.+|-++.+.|-. +.+-|.|+..++..+.|.+|+.+-+- +....+.++... +||+.+-.|.
T Consensus 30 ~~vs~Gn~~dv~----~~d~l~~~~~D~~t~~I~ly~E~~~d----~~~f~~~~~~a~~~KPVv~lk~Gr 91 (138)
T PF13607_consen 30 YVVSVGNEADVD----FADLLEYLAEDPDTRVIVLYLEGIGD----GRRFLEAARRAARRKPVVVLKAGR 91 (138)
T ss_dssp EEEE-TT-SSS-----HHHHHHHHCT-SS--EEEEEES--S-----HHHHHHHHHHHCCCS-EEEEE---
T ss_pred EEEEeCccccCC----HHHHHHHHhcCCCCCEEEEEccCCCC----HHHHHHHHHHHhcCCCEEEEeCCC
Confidence 456677766443 33445666777778999999996443 677777777765 8999998876
No 166
>cd07563 Peptidase_S41_IRBP Interphotoreceptor retinoid-binding protein; serine protease family S41. Interphotoreceptor retinoid-binding protein (IRBP) is a homolog of the S41 protease, C-terminal processing peptidase (CTPase) family. It is thought to facilitate the compartmentalization of the visual cycle that requires poorly soluble and potentially toxic retinoids to cross the aqueous subretinal space between the photoreceptors and the retinal pigment epithelium (RPE). IRBP is secreted by photoreceptors into the interphotoreceptor matrix (IPM) where it is rapidly turned over by a combination of RPE and photoreceptor endocytosis. It is the most abundant soluble protein component of the IPM, consisting of homologous modules, each repeat structure arising through the duplication (as in teleost IRBP) or quadruplication (in tetrapods) of an ancient gene, arisen in the early evolution of the vertebrate eye. IRBP has been shown to promote the release of all-trans retinol from photoreceptors
Probab=44.50 E-value=1.4e+02 Score=26.74 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=34.1
Q ss_pred CcEEEEE-eCCCCChhHHHHHHHHHH---------------------------------hcCCCeEEEEccccchHHHHH
Q 023631 128 KRVYMYI-NGPGGDVTPTLAIYDTMQ---------------------------------SLKSPVGTHCVGFAYHLAGFL 173 (279)
Q Consensus 128 k~I~L~I-NSPGGsV~aglaIyd~i~---------------------------------~~~~pV~Tv~~G~AAS~aslI 173 (279)
+.++|-+ +.+||+...+..|.+.+- ..+.||+.++.+..+|+|-.+
T Consensus 96 ~~LIIDLR~N~GG~~~~~~~l~s~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~vL~~~~T~SaaE~~ 175 (250)
T cd07563 96 DALIIDLRYNGGGSDSLVAYLASYFTDEDKPVHLYTIYKRPGNTTTELWTLPVVPGGRYGYTKPVYVLTSPVTFSAAEEF 175 (250)
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHcCCCCCcEEEEEEEECCCCCCcccceeeecCCCcccCCCCEEEEeCCCcCcHHHHH
Confidence 6666666 557777766666665553 123478888888888888777
Q ss_pred HcCC
Q 023631 174 LAGG 177 (279)
Q Consensus 174 l~aG 177 (279)
+.+-
T Consensus 176 a~~l 179 (250)
T cd07563 176 AYAL 179 (250)
T ss_pred HHHH
Confidence 7754
No 167
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=44.14 E-value=1.5e+02 Score=25.25 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=42.8
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcccc
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFA 166 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~A 166 (279)
++.++++. +++.+.+.+.|. ...+.-.|.-+-+-|- +-..-.+|.+.|+..+++++-+++|.=
T Consensus 50 ~ifllG~~--~~~~~~~~~~l~---~~yP~l~ivg~~~g~f-~~~~~~~i~~~I~~~~pdiv~vglG~P 112 (172)
T PF03808_consen 50 RIFLLGGS--EEVLEKAAANLR---RRYPGLRIVGYHHGYF-DEEEEEAIINRINASGPDIVFVGLGAP 112 (172)
T ss_pred eEEEEeCC--HHHHHHHHHHHH---HHCCCeEEEEecCCCC-ChhhHHHHHHHHHHcCCCEEEEECCCC
Confidence 66666664 677777777665 3344333333333333 777889999999999999999887754
No 168
>TIGR02886 spore_II_AA anti-sigma F factor antagonist. The anti-sigma F factor antagonist, also called stage II sporulation protein AA, is a protein universal among endospore-forming bacteria, all of which belong to the Firmcutes
Probab=38.68 E-value=54 Score=24.98 Aligned_cols=35 Identities=6% Similarity=0.076 Sum_probs=25.7
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEE
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYM 132 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L 132 (279)
-++.+.|+++...++.+..++..+-...+.+.+.|
T Consensus 10 ~vi~l~G~L~f~~~~~~~~~l~~~~~~~~~~~vil 44 (106)
T TIGR02886 10 LIVRLSGELDHHTAERVRRKIDDAIERRPIKHLIL 44 (106)
T ss_pred EEEEEecccchhhHHHHHHHHHHHHHhCCCCEEEE
Confidence 46789999999999999998875433233456666
No 169
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=38.22 E-value=94 Score=29.73 Aligned_cols=66 Identities=11% Similarity=0.149 Sum_probs=45.4
Q ss_pred cEEEEcccc-ChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccc
Q 023631 98 RVIFIGQNI-DEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAY 167 (279)
Q Consensus 98 riIfL~g~I-~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AA 167 (279)
.+|-+++.- .+- .+.+.|.+|..++..+.|.||+-.-|-....+-...+. ...++||+++..|..+
T Consensus 198 ~~VsiGnd~~~g~---~~~D~L~~~~~Dp~T~~Ivl~~E~gG~~e~~aa~fi~~-~~~~KPVVa~~aGrsa 264 (317)
T PTZ00187 198 TCVGIGGDPFNGT---NFIDCLKLFLNDPETEGIILIGEIGGTAEEEAAEWIKN-NPIKKPVVSFIAGITA 264 (317)
T ss_pred EEEEeCCCCCCCC---CHHHHHHHHhhCCCccEEEEEEecCCchhHHHHHHHHh-hcCCCcEEEEEecCCC
Confidence 456788773 121 24555667777777899999998877675666555554 3357899999988765
No 170
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=36.15 E-value=89 Score=29.04 Aligned_cols=64 Identities=20% Similarity=0.152 Sum_probs=42.5
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHhcCCCeEEEE
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQSLKSPVGTHC 162 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~~~~pV~Tv~ 162 (279)
||+|++..+...--..+...|-.|..+.+..-++.-- |..|| ......+++.|+....+|.|..
T Consensus 2 ~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~gG-~Gi~~~~~~~L~~~GvDviT~G 66 (266)
T TIGR00282 2 KFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTHG-KGLTLKIYEFLKQSGVNYITMG 66 (266)
T ss_pred eEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCCC-CCCCHHHHHHHHhcCCCEEEcc
Confidence 6899888887654555555555666655433333333 34444 3556889999999999999985
No 171
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.57 E-value=2.8e+02 Score=23.55 Aligned_cols=73 Identities=14% Similarity=0.131 Sum_probs=47.0
Q ss_pred chhHhhhc--CcEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEcccc
Q 023631 89 DLWNALYR--ERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFA 166 (279)
Q Consensus 89 di~~~L~~--~riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~A 166 (279)
++++..-+ .|+.+|++ ++++.+.+.+.|. ...+.-.|.-+-+-|=+..... .|.+.|+...++++-+++|.=
T Consensus 37 ~ll~~~~~~~~~v~llG~--~~~~~~~~~~~l~---~~yp~l~i~g~~~g~~~~~~~~-~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 37 ALLELAAQKGLRVFLLGA--KPEVLEKAAERLR---ARYPGLKIVGYHHGYFGPEEEE-EIIERINASGADILFVGLGAP 110 (171)
T ss_pred HHHHHHHHcCCeEEEECC--CHHHHHHHHHHHH---HHCCCcEEEEecCCCCChhhHH-HHHHHHHHcCCCEEEEECCCC
Confidence 44444433 35666655 4666666666554 3445555665566676665544 399999999999999988754
Q ss_pred c
Q 023631 167 Y 167 (279)
Q Consensus 167 A 167 (279)
-
T Consensus 111 k 111 (171)
T cd06533 111 K 111 (171)
T ss_pred H
Confidence 3
No 172
>COG0779 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.21 E-value=1.1e+02 Score=26.15 Aligned_cols=41 Identities=20% Similarity=0.329 Sum_probs=25.2
Q ss_pred EEEc--cccChhHHHHHHHHHHh-hcccCCC-CcEEEEEeCCCCC
Q 023631 100 IFIG--QNIDEEFSNQILATMLY-LDSVDDS-KRVYMYINGPGGD 140 (279)
Q Consensus 100 IfL~--g~I~~~~a~~ii~~Ll~-L~~~d~~-k~I~L~INSPGGs 140 (279)
|++. |.++=+....+..++.. |+.+|+. ..-+|.+.|||-+
T Consensus 41 I~id~~g~v~lddC~~vSr~is~~LD~edpi~~~Y~LEVSSPGld 85 (153)
T COG0779 41 IYIDKEGGVTLDDCADVSRAISALLDVEDPIEGAYFLEVSSPGLD 85 (153)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHhccCCcccccEEEEeeCCCCC
Confidence 4455 55655545554444432 4556654 4677999999976
No 173
>PHA00099 minor capsid protein
Probab=31.33 E-value=3e+02 Score=23.11 Aligned_cols=53 Identities=17% Similarity=0.213 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHH---HHHHhCCCHHHHHhHhcCCceeCHHHHHHcCCc
Q 023631 202 QADDIRNEADELLRVRDYIFKE---LSRKTGQPFEKITKDLSRIKRFGSQEALEYGLI 256 (279)
Q Consensus 202 ~a~di~~~a~el~~l~~~i~~~---ya~~tG~~~e~I~~~~~rd~~lsa~EAleyGLI 256 (279)
.+-|.....+-+.+.++.|..+ +.++.|.+++++...+++..- -+||+.+||+
T Consensus 59 sp~D~qeAl~~V~~~qeaFdsLPA~iR~~F~NdP~eml~~L~dp~N--ydEa~~LGl~ 114 (147)
T PHA00099 59 SPMDYQEALNVVIEAQEAFDSLPAKIRERFGNDPEEMLDFLSDPEN--YDEAKALGLV 114 (147)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhHHHHHHhCCCHHHHHHHHcChhh--HHHHHhccee
Confidence 4455555555555555555443 456778889988888875543 4899999999
No 174
>cd07562 Peptidase_S41_TRI Tricorn protease; serine protease family S41. The tricorn protease (TRI), a member of the S41 peptidase family and named for its tricorn-like shape, exists only in some archaea and eubacteria. It has been shown to act as a carboxypeptidase, involved in the degradation of proteasomal products to preferentially yield di- and tripeptides, with subsequent and final degradations to free amino acid residues by tricorn interacting factors, F1, F2 and F3. Tricorn is a hexameric D3-symmetric protease of 720kD, and can self-associate further into a giant icosahedral capsid structure containing twenty copies of the complex. Each tricorn peptidase monomer consists of five structural domains: a six-bladed beta-propeller and a seven-bladed beta-propeller that limit access to the active site, the two domains (C1 and C2) that carry the active site residues, and a PDZ-like domain (proposed to be important for substrate recognition) between the C1 and C2 domains. The active sit
Probab=30.89 E-value=2.8e+02 Score=25.10 Aligned_cols=80 Identities=18% Similarity=0.206 Sum_probs=50.0
Q ss_pred hhhcCcEEEEccc-cChhHHHHHHHHHHhhcccCCCCcEEEEE-eCCCCChhHHHHHHHHHHh-----------------
Q 023631 93 ALYRERVIFIGQN-IDEEFSNQILATMLYLDSVDDSKRVYMYI-NGPGGDVTPTLAIYDTMQS----------------- 153 (279)
Q Consensus 93 ~L~~~riIfL~g~-I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I-NSPGGsV~aglaIyd~i~~----------------- 153 (279)
++..++|-||.=+ .+++....+...++. ..+ .+.++|-+ +-+||++.. .|.+.+..
T Consensus 83 ~~~~~~igYi~i~~~~~~~~~~~~~~~~~--~~~-~~glIiDlR~N~GG~~~~--~l~~~~~~~~~~~~~~r~~~~~~~~ 157 (266)
T cd07562 83 ELSDGRIGYVHIPDMGDDGFAEFLRDLLA--EVD-KDGLIIDVRFNGGGNVAD--LLLDFLSRRRYGYDIPRGGGKPVTY 157 (266)
T ss_pred HhcCCcEEEEEeCCCChHHHHHHHHHHHh--cCC-CceEEEEecCCCCCcHHH--HHHHHhCCCceEEEccCCCCCCCCC
Confidence 3344566554322 244445566665542 222 78899998 668888543 33333311
Q ss_pred ----cCCCeEEEEccccchHHHHHHcCC
Q 023631 154 ----LKSPVGTHCVGFAYHLAGFLLAGG 177 (279)
Q Consensus 154 ----~~~pV~Tv~~G~AAS~aslIl~aG 177 (279)
.+.||+.++.+.++|+|-+++.+-
T Consensus 158 p~~~~~~pv~vL~~~~t~SaaE~~a~~l 185 (266)
T cd07562 158 PSGRWRGPVVVLVNEGSASDAEIFAYGF 185 (266)
T ss_pred cccccCCCEEEEECCCCCchHHHHHHHH
Confidence 256999999999999998888754
No 175
>PF00681 Plectin: Plectin repeat; InterPro: IPR001101 Plectin may have a role in cross-linking intermediate filaments, in inter-linking intermediate filaments with microtubules and microfilaments and in anchoring intermediate filaments to the plasma and nuclear membranes. Plectin is recruited into hemidesmosomes, multiprotein complexes that facilitate adhesion of epithelia to the basement membrane, thereby providing linkage between the intracellular keratin filaments to the laminins of the extracellular matrix. Plectin binds to hemidesmosomes through association of its actin-binding domain with the first pair of fibronectin type III repeats and a small part of the connecting segment of the integrin-beta4 subunit, the latter (integrin-alpha6,beta4) acting as a receptor for the extracellular matrix component laminin-5. The plectin repeat is also seen in the cell adhesion junction plaque proteins, desmoplakin, envoplakin, and bullous pemphigoid antigen. The domains in plakins show considerable sequence homology. The N terminus consists of a plakin domain containing a number of subdomains with high alpha-helical content, while the central coiled-coil domain is composed of heptad repeats involved in the dimerisation of plakin, and the C terminus contains one or more homologous repeat sequences referred to plectin repeats []. This entry represents the plectin repeats found in the C terminus of plakin proteins.; GO: 0005856 cytoskeleton; PDB: 1LM7_A 1LM5_A.
Probab=30.78 E-value=32 Score=22.93 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=15.5
Q ss_pred cCCceeCHHHHHHcCCcee
Q 023631 240 SRIKRFGSQEALEYGLIDR 258 (279)
Q Consensus 240 ~rd~~lsa~EAleyGLID~ 258 (279)
.....||-+||++.||||.
T Consensus 17 ~tg~~lsv~~A~~~glId~ 35 (45)
T PF00681_consen 17 ETGERLSVEEAIQRGLIDS 35 (45)
T ss_dssp TTTEEEEHHHHHHTTSS-H
T ss_pred CCCeEEcHHHHHHCCCcCH
Confidence 4567889999999999995
No 176
>PRK06091 membrane protein FdrA; Validated
Probab=30.17 E-value=1.1e+02 Score=31.50 Aligned_cols=69 Identities=19% Similarity=0.278 Sum_probs=48.0
Q ss_pred cEEEEccc-cChhH-HHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEEEccccch
Q 023631 98 RVIFIGQN-IDEEF-SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYH 168 (279)
Q Consensus 98 riIfL~g~-I~~~~-a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv~~G~AAS 168 (279)
.+|-+++. +.++. .-.+...|.||..++..+.|.+|+-=|+-.+.. .+.+.++..++||+++..|.-..
T Consensus 222 ~~Vs~Gn~Dls~~~ggi~~~D~L~~L~~DP~TkvIvly~kppaE~v~~--~fl~aar~~~KPVVvlk~Grs~~ 292 (555)
T PRK06091 222 HAIGLGGRDLSAEVGGISALTALEMLSADEKSEVIAFVSKPPAEAVRL--KIINAMKATGKPVVALFLGYTPA 292 (555)
T ss_pred EEEECCCCccccccCCCCHHHHHHHHhhCCCCcEEEEEEecCchHHHH--HHHHHHhhCCCCEEEEEecCCch
Confidence 34556666 11111 112445566777777789999998778777775 88888888899999999986543
No 177
>PRK14640 hypothetical protein; Provisional
Probab=30.06 E-value=1.1e+02 Score=25.84 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=34.8
Q ss_pred EEEccc--cChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 023631 100 IFIGQN--IDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 160 (279)
Q Consensus 100 IfL~g~--I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~T 160 (279)
|||..+ |+-+....+..++-. |+.+|+ ...-+|.+.|||=+= +=...-+..++...+|..
T Consensus 39 V~ID~~~gv~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R-pL~~~~~f~r~~G~~v~V 102 (152)
T PRK14640 39 VYIDGENGVSVENCAEVSHQVGAIMDVEDPITEEYYLEVSSPGLDR-PLFKVAQFEKYVGQEAAV 102 (152)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCeEEE
Confidence 555433 666555555555532 455554 457899999999651 112334566666665544
No 178
>PLN02522 ATP citrate (pro-S)-lyase
Probab=28.78 E-value=1.7e+02 Score=30.63 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=43.9
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHh--cCCCeEEEEccccc
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQS--LKSPVGTHCVGFAY 167 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~--~~~pV~Tv~~G~AA 167 (279)
.+|-+++..+..+ .+.+.|.+++.++..+.|.||+-=-|. ++....+.++. .++||++++.|..+
T Consensus 196 ~~VsiGnd~~~g~--~~~D~L~~~~~Dp~Tk~IvlygEiGg~---~e~~f~ea~~~a~~~KPVVa~kaGrsa 262 (608)
T PLN02522 196 EGIAIGGDVFPGS--TLSDHVLRFNNIPQIKMIVVLGELGGR---DEYSLVEALKQGKVSKPVVAWVSGTCA 262 (608)
T ss_pred EEEEeCCCCCCCC--CHHHHHHHHhcCCCCCEEEEEEecCch---hHHHHHHHHHHhcCCCCEEEEeccCCC
Confidence 5577888765322 245667777777778999999873333 33444455554 56999999999876
No 179
>PRK14633 hypothetical protein; Provisional
Probab=27.93 E-value=1.3e+02 Score=25.41 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=33.7
Q ss_pred EEEccc--cChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 023631 100 IFIGQN--IDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 160 (279)
Q Consensus 100 IfL~g~--I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~T 160 (279)
|||..+ |+-+....+.+++-. |+.+|+ ...-+|.+.|||=+= .=...-+..++...+|..
T Consensus 36 V~ID~~~Gv~lddC~~vSr~i~~~LD~~d~i~~~Y~LEVSSPGldR-pL~~~~~f~r~~G~~v~V 99 (150)
T PRK14633 36 IFIDHENGVSVDDCQIVSKEISAVFDVEDPVSGKYILEVSSPGMNR-QIFNIIQAQALVGFNVKA 99 (150)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhccCcCCCCCeEEEEeCCCCCC-CCCCHHHHHHhCCCeEEE
Confidence 455432 555555555555432 354454 467899999999651 112334566666665543
No 180
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=27.67 E-value=83 Score=23.83 Aligned_cols=37 Identities=16% Similarity=0.124 Sum_probs=25.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEE
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI 134 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I 134 (279)
.++.+.|+++...+..+..++..+-.+...+.+.|.+
T Consensus 10 ~ii~~~G~l~f~~~~~~~~~l~~~~~~~~~~~vilDl 46 (100)
T cd06844 10 WVVRLEGELDHHSVEQFKEELLHNITNVAGKTIVIDI 46 (100)
T ss_pred EEEEEEEEecHhhHHHHHHHHHHHHHhCCCCEEEEEC
Confidence 5688999999999999988876433333345555543
No 181
>PRK14635 hypothetical protein; Provisional
Probab=27.55 E-value=1.3e+02 Score=25.76 Aligned_cols=35 Identities=9% Similarity=0.166 Sum_probs=21.0
Q ss_pred cChhHHHHHHHHHHh-hcccCCCCcEEEEEeCCCCC
Q 023631 106 IDEEFSNQILATMLY-LDSVDDSKRVYMYINGPGGD 140 (279)
Q Consensus 106 I~~~~a~~ii~~Ll~-L~~~d~~k~I~L~INSPGGs 140 (279)
|+-+....+...+-. |+..++..+-+|.+.|||=+
T Consensus 50 v~lddC~~vSr~is~~LD~~d~~~~Y~LEVSSPGld 85 (162)
T PRK14635 50 VSLLECEQVSRKLKEELERISPDLDFTLKVSSAGAE 85 (162)
T ss_pred cCHHHHHHHHHHHHHHhCCCCCCCCeEEEEcCCCCC
Confidence 555444444443321 34445557899999999944
No 182
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=27.43 E-value=1e+02 Score=22.38 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=23.0
Q ss_pred HHHHHHHHhCC-CHHHHHhHhcCCceeCHHHHHHc
Q 023631 220 IFKELSRKTGQ-PFEKITKDLSRIKRFGSQEALEY 253 (279)
Q Consensus 220 i~~~ya~~tG~-~~e~I~~~~~rd~~lsa~EAley 253 (279)
+++-+.+-+|. +.++|..++. +..|.+.||.+-
T Consensus 8 ~VQ~iKEiv~~hse~eIya~L~-ecnMDpnea~qr 41 (60)
T PF06972_consen 8 TVQSIKEIVGCHSEEEIYAMLK-ECNMDPNEAVQR 41 (60)
T ss_pred HHHHHHHHhcCCCHHHHHHHHH-HhCCCHHHHHHH
Confidence 34445555666 8888887774 788888888763
No 183
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=27.41 E-value=2.7e+02 Score=20.87 Aligned_cols=35 Identities=3% Similarity=0.098 Sum_probs=24.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEE
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYM 132 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L 132 (279)
-+|.+.|+++...+..+-..+..+......+.+.|
T Consensus 14 ~vi~~~G~l~~~~~~~~~~~l~~~~~~~~~~~vvi 48 (108)
T TIGR00377 14 VIVRLSGELDAHTAPLLREKVTPAAERTGPRPIVL 48 (108)
T ss_pred EEEEEecccccccHHHHHHHHHHHHHhcCCCeEEE
Confidence 45779999999888888887776544333455666
No 184
>PF01740 STAS: STAS domain; InterPro: IPR002645 The STAS (Sulphate Transporter and AntiSigma factor antagonist) domain is found in the C-terminal region of sulphate transporters and bacterial anti-sigma factor antagonists. It has been suggested that this domain may have a general NTP binding function. The establishment of differential gene expression in sporulating Bacillus subtilis involves four protein components one of which is SpoIIAA (P10727 from SWISSPROT). The four components regulate the sporulation sigma factor F. Early in sporulation, SpoIIAA is in the phosphorylated state (SpoIIAA-P), as a result of the activity of the ATP-dependent protein kinase SpoIIAB (P10728 from SWISSPROT). The site at which this protein is a conserved serine. SpoIIAB is an anti-sigma factor that in its free form inhibits F by binding to it. Competition by SpoIIAA (the anti-anti-sigma factor) for binding to SpoIIAB releases Sigma F activity []. The STAS domain is found in the anti-sigma factor antagonist SpoIIAA.; PDB: 3T6O_B 3LKL_B 1H4Z_A 1H4Y_B 1H4X_B 3NY7_A 3OIZ_A 1T6R_A 1VC1_B 1SBO_A ....
Probab=27.28 E-value=2.9e+02 Score=21.15 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=51.1
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCC--------CCcEEEEEeC-CCCChhHHHHHHHHHHhcC-CCeEEEEccccc
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDD--------SKRVYMYING-PGGDVTPTLAIYDTMQSLK-SPVGTHCVGFAY 167 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~--------~k~I~L~INS-PGGsV~aglaIyd~i~~~~-~pV~Tv~~G~AA 167 (279)
.|+.+.|+++...++.+.+.+..+..+++ .+.++|.+.. +.=+..+..+|.+..+.++ ..+..+..|.--
T Consensus 11 ~ii~~~g~l~f~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vIlD~s~v~~iDssgi~~L~~~~~~~~~~g~~~~l~~~~~ 90 (117)
T PF01740_consen 11 LIIRLDGPLFFANAEEFRDRIRKLIDEDPERIKKRQTIKNVILDMSGVSFIDSSGIQALVDIIKELRRRGVQLVLVGLNP 90 (117)
T ss_dssp EEEEEESEESHHHHHHHHHHHHHHHCCSSS--HTSSSSSEEEEEETTESEESHHHHHHHHHHHHHHHHTTCEEEEESHHH
T ss_pred EEEEEeeEEEHHHHHHHHHHHHHhhhcccccccccccceEEEEEEEeCCcCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
Confidence 67889999999999999999987766554 4677776644 3334555556666666655 345555555544
Q ss_pred hHHHHHHcC
Q 023631 168 HLAGFLLAG 176 (279)
Q Consensus 168 S~aslIl~a 176 (279)
..-..+-.+
T Consensus 91 ~v~~~l~~~ 99 (117)
T PF01740_consen 91 DVRRILERS 99 (117)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 444444333
No 185
>PRK14637 hypothetical protein; Provisional
Probab=26.84 E-value=1.3e+02 Score=25.55 Aligned_cols=61 Identities=10% Similarity=0.135 Sum_probs=33.6
Q ss_pred EEEccc--cChhHHHHHHHHHHh-hcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEE
Q 023631 100 IFIGQN--IDEEFSNQILATMLY-LDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTH 161 (279)
Q Consensus 100 IfL~g~--I~~~~a~~ii~~Ll~-L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv 161 (279)
|||..+ |+-+....+.+++-. |+..++..+.+|.+.|||=+= +=...-+..++....|...
T Consensus 41 V~ID~~~gV~iddC~~vSr~Is~~LD~~~~~~~y~LEVSSPGldR-pL~~~~~f~r~~G~~V~V~ 104 (151)
T PRK14637 41 AVIYSAGGVGLDDCARVHRILVPRLEALGGVRDVFLEVSSPGIER-VIKNAAEFSIFVGETVKVW 104 (151)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCC-CCCCHHHHHHhCCCEEEEE
Confidence 555533 665555555555431 233222456799999999651 1112356666666555543
No 186
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=26.70 E-value=95 Score=27.67 Aligned_cols=45 Identities=31% Similarity=0.350 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcccCCCCcEEEEEeCCCCChhHHHHHHHHHHhcC
Q 023631 111 SNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLK 155 (279)
Q Consensus 111 a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV~aglaIyd~i~~~~ 155 (279)
+..|.++++.+..-...|.+-+|+|+++|.|+.+.-|-++++.=+
T Consensus 31 s~ai~~kV~e~~~fk~skrvs~YmSm~~~Ev~T~~Ii~~~fq~gK 75 (200)
T KOG3093|consen 31 SEAISKKVLELPWFKNSKRVSIYMSMDKGEVDTGEIIKEAFQDGK 75 (200)
T ss_pred HHHHHHHHHhhHHHHhcCceEEEEecCcccccHHHHHHHHHhcCC
Confidence 344555555544434578999999999999999987777777643
No 187
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=26.54 E-value=1.6e+02 Score=27.03 Aligned_cols=63 Identities=19% Similarity=0.162 Sum_probs=42.7
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEE---eCCCCChhHHHHHHHHHHhcCCCeEEEEc
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYI---NGPGGDVTPTLAIYDTMQSLKSPVGTHCV 163 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~I---NSPGGsV~aglaIyd~i~~~~~pV~Tv~~ 163 (279)
||+||+..+...-...+...|..+..+.+. ++. .. |.-||. .-.-.+++.|.....++.|...
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~-D~v-i~NgEn~~gg~-gl~~~~~~~L~~~G~D~iTlGN 66 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKI-DFV-IANGENAAGGK-GITPKIAKELLSAGVDVITMGN 66 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCC-CEE-EECCccccCCC-CCCHHHHHHHHhcCCCEEEecc
Confidence 689999988887767777777777655432 222 22 445553 1236889999999999988753
No 188
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=26.40 E-value=1.1e+02 Score=28.40 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=30.5
Q ss_pred EEEEEeCCC-CChhHHHHHHHHHHhcCCCeEEEEccc
Q 023631 130 VYMYINGPG-GDVTPTLAIYDTMQSLKSPVGTHCVGF 165 (279)
Q Consensus 130 I~L~INSPG-GsV~aglaIyd~i~~~~~pV~Tv~~G~ 165 (279)
|.+.+..+| |.++.+++|.+.++. ...|.-++.|.
T Consensus 2 il~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~ 37 (321)
T TIGR00661 2 ILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGR 37 (321)
T ss_pred EEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCC
Confidence 788999999 999999999999998 77777666555
No 189
>TIGR02763 chlamy_scaf chlamydiaphage internal scaffolding protein. Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein.
Probab=25.59 E-value=3.2e+02 Score=22.06 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=36.9
Q ss_pred ChhhHHHHHHHHHHHHHHHHH---HHHHHhCCCHHHHHhHhcCC-ceeCHHHHHHcCCceeec
Q 023631 202 QADDIRNEADELLRVRDYIFK---ELSRKTGQPFEKITKDLSRI-KRFGSQEALEYGLIDRII 260 (279)
Q Consensus 202 ~a~di~~~a~el~~l~~~i~~---~ya~~tG~~~e~I~~~~~rd-~~lsa~EAleyGLID~I~ 260 (279)
++-|.....+-+.+.++.|.. -+.++.|.++++.-+.+++. .| +||+.+||.|.-.
T Consensus 29 sp~D~qeAln~Vie~~eaFdsLPAkvRe~FgNdPeeml~~L~d~~ny---de~~algll~~e~ 88 (114)
T TIGR02763 29 SPLDYQEALNIVIEGEEAFDSLPAKVRENFGNDPEEMLSWLEDEANY---DEVEALGLLDPET 88 (114)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHHHHHHhChhhH---HHHHHhccccccc
Confidence 344555544444444555444 45567889999888888653 44 7999999999653
No 190
>PRK14646 hypothetical protein; Provisional
Probab=25.19 E-value=1.5e+02 Score=25.26 Aligned_cols=60 Identities=13% Similarity=0.033 Sum_probs=32.7
Q ss_pred EEEcc----ccChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 023631 100 IFIGQ----NIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 160 (279)
Q Consensus 100 IfL~g----~I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~T 160 (279)
|||.. .|+-+....+..++-. |+.+|+ ...-+|.+.|||=+= .=...-|..++...+|..
T Consensus 40 V~IDk~~g~gVtldDC~~vSr~is~~LD~~D~i~~~Y~LEVSSPGldR-pL~~~~df~r~~G~~v~V 105 (155)
T PRK14646 40 IIIKKTNGDDISLDDCALFNTPASEEIENSNLLNCSYVLEISSQGVSD-ELTSERDFKTFKGFPVNV 105 (155)
T ss_pred EEEECCCCCCccHHHHHHHHHHHHHHhCcCCCCCCCeEEEEcCCCCCC-cCCCHHHHHHhCCCEEEE
Confidence 56653 2555444444444432 355554 356789999999651 111234566666655543
No 191
>PRK14639 hypothetical protein; Provisional
Probab=25.11 E-value=1.6e+02 Score=24.57 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=33.7
Q ss_pred EEEc--cccChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 023631 100 IFIG--QNIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 160 (279)
Q Consensus 100 IfL~--g~I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~T 160 (279)
|||. +-|+-+....+.+.+-. |+.+|+ ..+-+|.+.|||=+= +=...-+..++...+|..
T Consensus 30 V~Id~~~gv~iddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGl~R-pL~~~~~f~r~~G~~v~v 93 (140)
T PRK14639 30 VYITKEGGVNLDDCERLSELLSPIFDVEPPVSGEYFLEVSSPGLER-KLSKIEHFAKSIGELVKI 93 (140)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCEEEE
Confidence 5554 33666555555555532 454454 356799999999541 111234556666665554
No 192
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=24.46 E-value=2e+02 Score=23.86 Aligned_cols=57 Identities=14% Similarity=0.225 Sum_probs=33.0
Q ss_pred hHhhh--cCcEEEEccccCh------hHHHHHHHHHHhhcccCCCCcEEEEEeCCCCC--hhHHHHHHHHHH
Q 023631 91 WNALY--RERVIFIGQNIDE------EFSNQILATMLYLDSVDDSKRVYMYINGPGGD--VTPTLAIYDTMQ 152 (279)
Q Consensus 91 ~~~L~--~~riIfL~g~I~~------~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGs--V~aglaIyd~i~ 152 (279)
|++.+ ...+-|..=+|.| +..+.++..+..+ .+.-.|.+||-.|. -+.++.||+.|+
T Consensus 83 ~e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~-----p~~~~l~fhC~~G~GRTTt~Mv~~~li~ 149 (149)
T PF14566_consen 83 TEEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSL-----PKDTWLHFHCQAGRGRTTTFMVMYDLIR 149 (149)
T ss_dssp -HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS------TT-EEEEE-SSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44443 3455555555555 3455555555433 24678888998876 688999999885
No 193
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=24.17 E-value=1.2e+02 Score=19.99 Aligned_cols=32 Identities=19% Similarity=0.100 Sum_probs=25.6
Q ss_pred HHHHHHHhCCCHHHHHhHhcCCceeCHHHHHH
Q 023631 221 FKELSRKTGQPFEKITKDLSRIKRFGSQEALE 252 (279)
Q Consensus 221 ~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAle 252 (279)
.+-+++.+|.+...+.++.......+.+.+..
T Consensus 12 ~~~la~~~gis~~~i~~~~~g~~~~~~~~~~~ 43 (55)
T PF01381_consen 12 QKELAEKLGISRSTISRIENGKRNPSLDTLKK 43 (55)
T ss_dssp HHHHHHHHTS-HHHHHHHHTTSSTSBHHHHHH
T ss_pred HHHHHHHhCCCcchhHHHhcCCCCCCHHHHHH
Confidence 46688999999999999998888888887765
No 194
>PRK14638 hypothetical protein; Provisional
Probab=23.85 E-value=1.7e+02 Score=24.75 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=33.8
Q ss_pred EEEc---cccChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEEE
Q 023631 100 IFIG---QNIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTH 161 (279)
Q Consensus 100 IfL~---g~I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~Tv 161 (279)
|||. |.|+-+....+...|-. |+.+|. ...-+|.+.|||=+= +=...-+..++...+|...
T Consensus 41 V~ID~~~G~v~lddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR-pL~~~~~f~r~~G~~v~V~ 106 (150)
T PRK14638 41 IIIDNPVGYVSVRDCELFSREIERFLDREDLIEHSYTLEVSSPGLDR-PLRGPKDYVRFTGKLAKIV 106 (150)
T ss_pred EEEECCCCCcCHHHHHHHHHHHHHHhccccccCCceEEEEeCCCCCC-CCCCHHHHHHhCCCEEEEE
Confidence 5554 33766655555555532 344443 356789999999651 1122345556665555443
No 195
>PRK14647 hypothetical protein; Provisional
Probab=23.33 E-value=1.7e+02 Score=24.94 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=31.0
Q ss_pred EEEcc--ccChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCC-hhHHHHHHHHHHhcCCCeEE
Q 023631 100 IFIGQ--NIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGD-VTPTLAIYDTMQSLKSPVGT 160 (279)
Q Consensus 100 IfL~g--~I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGs-V~aglaIyd~i~~~~~pV~T 160 (279)
|||.. .|+-+....+.+.+-. |+.+|+ ...-+|.+.|||=+ ..- ..-+..++...+|..
T Consensus 41 V~ID~~~gvslddC~~vSr~is~~LD~~d~i~~~Y~LEVSSPG~~RpL~--~~~~f~r~~G~~v~V 104 (159)
T PRK14647 41 LFIDKEGGVNLDDCAEVSRELSEILDVEDFIPERYTLEVSSPGLDRPLK--KEADYERYAGRLVKV 104 (159)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHcccccCCCCeEEEEcCCCCCCcCC--CHHHHHHhCCcEEEE
Confidence 45543 3555444444444321 344454 35679999999954 222 234555555554443
No 196
>smart00250 PLEC Plectin repeat.
Probab=23.10 E-value=54 Score=20.92 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=15.8
Q ss_pred CCceeCHHHHHHcCCceee
Q 023631 241 RIKRFGSQEALEYGLIDRI 259 (279)
Q Consensus 241 rd~~lsa~EAleyGLID~I 259 (279)
...-||-.||++-||||..
T Consensus 18 t~~~lsv~eA~~~glid~~ 36 (38)
T smart00250 18 TGQKLSVEEALRRGLIDPE 36 (38)
T ss_pred CCCCcCHHHHHHcCCCCcc
Confidence 4566799999999999964
No 197
>PRK14632 hypothetical protein; Provisional
Probab=22.74 E-value=1.8e+02 Score=25.25 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=33.3
Q ss_pred EEEccc--cChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 023631 100 IFIGQN--IDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 160 (279)
Q Consensus 100 IfL~g~--I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~T 160 (279)
|||..+ |+-+....+..++-. |+.+|. ...-+|.+.|||=+= .=...-+..++....|..
T Consensus 40 V~ID~~~GV~ldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGldR-pL~~~~~f~r~iG~~V~V 103 (172)
T PRK14632 40 LFVDGPEGVTIDQCAEVSRHVGLALEVEDVISSAYVLEVSSPGLER-PFFRAEQMSPYVGRQIEL 103 (172)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCEEEE
Confidence 556543 655555555554432 344443 357789999999651 112234556666655554
No 198
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=22.56 E-value=72 Score=27.74 Aligned_cols=29 Identities=28% Similarity=0.676 Sum_probs=20.6
Q ss_pred CC-CChhHHH------HHHHHHHhcCCCeEEEEccc
Q 023631 137 PG-GDVTPTL------AIYDTMQSLKSPVGTHCVGF 165 (279)
Q Consensus 137 PG-GsV~agl------aIyd~i~~~~~pV~Tv~~G~ 165 (279)
|| |...+.+ .+.+.++....||..+|.|+
T Consensus 45 PG~G~~~~~~~~l~~~~l~~~i~~~~~PilGIClG~ 80 (196)
T PRK13170 45 PGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGM 80 (196)
T ss_pred CCCCchHHHHHHHHHcChHHHHHHcCCCEEEECHHH
Confidence 88 6665553 35677777788988887764
No 199
>PRK14643 hypothetical protein; Provisional
Probab=22.49 E-value=1.9e+02 Score=24.93 Aligned_cols=56 Identities=13% Similarity=0.086 Sum_probs=29.6
Q ss_pred cccChhHHHHHHHHHHh-hcccCC-CCcEEEEEeCCCCChhHHHHHHHHHHhcCCCeEE
Q 023631 104 QNIDEEFSNQILATMLY-LDSVDD-SKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGT 160 (279)
Q Consensus 104 g~I~~~~a~~ii~~Ll~-L~~~d~-~k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~T 160 (279)
|.|+-+....+..++-. |+.+|+ ...-+|.++|||=+= .=...-|..++...+|..
T Consensus 52 ggvtldDC~~vSr~is~~LD~~d~i~~~Y~LEVSSPGleR-pL~~~~df~r~~G~~V~V 109 (164)
T PRK14643 52 KPLDFDILIKANDLVSNKIDQFIKTSEKYLLEISSSGIEK-QIRSQEELVKALNQWVYV 109 (164)
T ss_pred CCcCHHHHHHHHHHHHHHhCccCCCCCCeEEEecCCCCCC-CCCCHHHHHHhcCCeEEE
Confidence 44665544444443321 344454 357789999999651 111223555665555543
No 200
>COG1366 SpoIIAA Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) [Signal transduction mechanisms]
Probab=22.04 E-value=1.4e+02 Score=23.38 Aligned_cols=42 Identities=17% Similarity=0.197 Sum_probs=28.6
Q ss_pred cEEEEccccChhHHHHHHHHHHhhcccCCCCcEEEEEeCCCCCh
Q 023631 98 RVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDV 141 (279)
Q Consensus 98 riIfL~g~I~~~~a~~ii~~Ll~L~~~d~~k~I~L~INSPGGsV 141 (279)
-+|.+.|+||...+..+...+...-.++..+. +.||.-|=+.
T Consensus 15 ~vl~l~G~lD~~~a~~~~e~~~~~~~~~~~~~--ivIDls~v~~ 56 (117)
T COG1366 15 LVLPLIGELDAARAPALKETLLEVIAASGARG--LVIDLSGVDF 56 (117)
T ss_pred EEEEeeEEEchHHHHHHHHHHHHHHhcCCCcE--EEEECCCCce
Confidence 36889999999999998888874333332333 6666666443
No 201
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=21.75 E-value=4.5e+02 Score=23.26 Aligned_cols=74 Identities=7% Similarity=-0.031 Sum_probs=45.7
Q ss_pred chhHhhhcCcEEEEccccChhHHHHHHHHHHhhc-ccCCCCcEEEEE---eCCCCChhHHHHHHHHHHhcCCCeEEEEcc
Q 023631 89 DLWNALYRERVIFIGQNIDEEFSNQILATMLYLD-SVDDSKRVYMYI---NGPGGDVTPTLAIYDTMQSLKSPVGTHCVG 164 (279)
Q Consensus 89 di~~~L~~~riIfL~g~I~~~~a~~ii~~Ll~L~-~~d~~k~I~L~I---NSPGGsV~aglaIyd~i~~~~~pV~Tv~~G 164 (279)
++...++.+--+.+-| +.+++-|--.+..|+ ..+....+.|.+ |...|.+.+-.+--..-+....+|+|+..|
T Consensus 75 ~~l~~~l~~~q~g~ag---~~TadAi~~av~rl~~~~~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG 151 (191)
T cd01455 75 ETLKMMHAHSQFCWSG---DHTVEATEFAIKELAAKEDFDEAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIG 151 (191)
T ss_pred HHHHHHHHhcccCccC---ccHHHHHHHHHHHHHhcCcCCCcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEec
Confidence 4567777766665544 566666666777775 444344555555 333455666553344455677899999888
Q ss_pred c
Q 023631 165 F 165 (279)
Q Consensus 165 ~ 165 (279)
-
T Consensus 152 ~ 152 (191)
T cd01455 152 S 152 (191)
T ss_pred C
Confidence 6
No 202
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=21.58 E-value=1.7e+02 Score=21.61 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCHHHHHhHhcCCceeCHHH
Q 023631 219 YIFKELSRKTGQPFEKITKDLSRIKRFGSQE 249 (279)
Q Consensus 219 ~i~~~ya~~tG~~~e~I~~~~~rd~~lsa~E 249 (279)
.+.+.+++.+|.+..++.++++.. .+|+++
T Consensus 45 ~~~~~lAk~~G~t~~~l~~~~~~G-kit~~~ 74 (75)
T TIGR02675 45 GALQALAKAMGVTRGELRKMLSDG-KLTADV 74 (75)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHCC-CCcccc
Confidence 356788999999999999998755 345543
No 203
>PRK14641 hypothetical protein; Provisional
Probab=20.69 E-value=2.1e+02 Score=24.96 Aligned_cols=59 Identities=8% Similarity=0.141 Sum_probs=30.9
Q ss_pred EEEccc--cChhHHHHHHHHHHh-hcccCCC-----CcEEEEEeCCCCChhHHHHHHHHHHhcCCCeE
Q 023631 100 IFIGQN--IDEEFSNQILATMLY-LDSVDDS-----KRVYMYINGPGGDVTPTLAIYDTMQSLKSPVG 159 (279)
Q Consensus 100 IfL~g~--I~~~~a~~ii~~Ll~-L~~~d~~-----k~I~L~INSPGGsV~aglaIyd~i~~~~~pV~ 159 (279)
|||..+ |+-+....+...|-. |+.++.. .+-+|.+.|||=+= .=....+..++....|.
T Consensus 42 V~ID~~~gv~lDdC~~vSr~Is~~LD~~d~i~~~~~~~Y~LEVSSPGldR-pL~~~~~f~r~~G~~V~ 108 (173)
T PRK14641 42 VLLDADTGIRIDQCAFFSRRIRERLEEDEELLGLVGEDFDLMVSSPGLGE-PIILPRQYGRHVGRLLR 108 (173)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhCcccccccCCCCCeEEEEeCCCCCC-cCCCHHHHHHhCCCEEE
Confidence 444432 554444444444321 3444432 57889999999651 11224555666655444
No 204
>TIGR03070 couple_hipB transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems.
Probab=20.17 E-value=2.4e+02 Score=18.38 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=23.4
Q ss_pred HHHHHHHhCCCHHHHHhHhcCCceeCHHHHHH
Q 023631 221 FKELSRKTGQPFEKITKDLSRIKRFGSQEALE 252 (279)
Q Consensus 221 ~~~ya~~tG~~~e~I~~~~~rd~~lsa~EAle 252 (279)
.+.+++..|.+...+.++..+..-.+.+++..
T Consensus 18 q~~lA~~~gvs~~~vs~~e~g~~~~~~~~~~~ 49 (58)
T TIGR03070 18 QADLADLAGVGLRFIRDVENGKPTVRLDKVLR 49 (58)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHHH
Confidence 56788899999999988877665556665443
Done!