Your job contains 1 sequence.
>023632
MKELLTEILTMFINRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTS
RSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKPAY
GSGFGDAYGGYGGGGFAGGGFGGSGGGGGGGGYRSSGAYGVRGGGYGGYGVGGEFGGYGG
YGGGMGAYRGEPSSLGYSGRYGGFNRGYDVTGDYGGLNESYGGYGGSGVGGGGGYGGGPS
GYDIGLGSSYGGSSGGAFFGSRGGYGGAGGSSRYHPYGR
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023632
(279 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 301 4.0e-35 3
TAIR|locus:504955752 - symbol:AT3G13224 species:3702 "Ara... 264 5.2e-29 3
TAIR|locus:2007903 - symbol:AT1G17640 species:3702 "Arabi... 223 3.2e-20 2
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 172 1.1e-15 3
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 176 2.0e-14 2
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 173 5.7e-14 2
FB|FBgn0263396 - symbol:sqd "squid" species:7227 "Drosoph... 159 8.0e-14 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 165 2.1e-13 2
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 161 4.3e-13 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 135 1.8e-12 3
ASPGD|ASPL0000063757 - symbol:AN10941 species:162425 "Eme... 174 2.6e-12 1
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 156 7.2e-12 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 133 1.5e-11 2
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 154 3.5e-11 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 130 3.9e-11 2
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 150 4.7e-11 2
WB|WBGene00003423 - symbol:msi-1 species:6239 "Caenorhabd... 155 9.1e-11 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 156 1.0e-10 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 121 1.3e-10 2
UNIPROTKB|G3V6A5 - symbol:Hnrpd "Heterogeneous nuclear ri... 121 2.2e-10 2
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 146 2.5e-10 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 146 2.5e-10 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 123 2.6e-10 2
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 120 2.6e-10 2
UNIPROTKB|H0YHB7 - symbol:MSI1 "RNA-binding protein Musas... 146 2.6e-10 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 131 2.7e-10 2
RGD|620365 - symbol:Hnrpd "heterogeneous nuclear ribonucl... 121 2.7e-10 2
UNIPROTKB|Q9JJ54 - symbol:Hnrnpd "Heterogeneous nuclear r... 121 2.7e-10 2
UNIPROTKB|B4DM51 - symbol:MSI2 "RNA-binding protein Musas... 148 3.0e-10 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 121 3.1e-10 2
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 125 3.1e-10 2
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 119 3.3e-10 2
UNIPROTKB|Q5ZIH1 - symbol:HNRNPD "Uncharacterized protein... 117 4.1e-10 2
UNIPROTKB|F1NCW4 - symbol:HNRNPD "Uncharacterized protein... 117 4.1e-10 2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 119 4.2e-10 2
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 118 4.2e-10 2
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 118 4.2e-10 2
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 137 4.4e-10 2
UNIPROTKB|H0Y8G5 - symbol:HNRNPD "Heterogeneous nuclear r... 117 4.4e-10 2
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 150 4.4e-10 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 148 5.6e-10 1
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 150 5.7e-10 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 148 5.8e-10 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 148 6.7e-10 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 120 6.8e-10 2
UNIPROTKB|F1M0Z9 - symbol:F1M0Z9 "Uncharacterized protein... 141 8.4e-10 1
UNIPROTKB|B4DTC3 - symbol:HNRNPD "cDNA FLJ54150, highly s... 117 8.6e-10 2
ZFIN|ZDB-GENE-030826-25 - symbol:msi2a "musashi homolog 2... 148 8.6e-10 1
TAIR|locus:2179939 - symbol:AtRZ-1c "AtRZ-1c" species:370... 130 9.3e-10 2
ZFIN|ZDB-GENE-040426-1268 - symbol:msi2b "musashi homolog... 148 9.5e-10 1
UNIPROTKB|I3LPG0 - symbol:MSI1 "Uncharacterized protein" ... 146 1.0e-09 1
UNIPROTKB|F1MS42 - symbol:MSI1 "Uncharacterized protein" ... 146 1.1e-09 1
UNIPROTKB|O43347 - symbol:MSI1 "RNA-binding protein Musas... 146 1.2e-09 1
UNIPROTKB|F1LRH1 - symbol:Msi1 "RNA-binding protein Musas... 145 1.3e-09 1
UNIPROTKB|A6H6Y0 - symbol:HNRNPD "Uncharacterized protein... 117 1.6e-09 2
UNIPROTKB|E2RIX2 - symbol:HNRNPD "Uncharacterized protein... 117 1.6e-09 2
UNIPROTKB|Q14103 - symbol:HNRNPD "Heterogeneous nuclear r... 117 1.6e-09 2
MGI|MGI:101947 - symbol:Hnrnpd "heterogeneous nuclear rib... 117 1.6e-09 2
MGI|MGI:107376 - symbol:Msi1 "musashi RNA-binding protein... 145 1.6e-09 1
RGD|628778 - symbol:Msi1 "musashi RNA-binding protein 1" ... 145 1.6e-09 1
UNIPROTKB|Q8K3P4 - symbol:Msi1 "RNA-binding protein Musas... 145 1.6e-09 1
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 147 1.6e-09 1
FB|FBgn0001215 - symbol:Hrb98DE "Heterogeneous nuclear ri... 120 1.7e-09 2
ZFIN|ZDB-GENE-050320-86 - symbol:msi1 "musashi homolog 1 ... 144 1.9e-09 1
WB|WBGene00001999 - symbol:hrp-1 species:6239 "Caenorhabd... 127 2.0e-09 2
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 139 2.3e-09 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 115 2.4e-09 2
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 113 2.8e-09 2
ZFIN|ZDB-GENE-070424-97 - symbol:hnrnpd "heterogeneous nu... 116 3.3e-09 2
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 136 3.4e-09 1
UNIPROTKB|F8W646 - symbol:HNRNPA1 "Heterogeneous nuclear ... 112 3.6e-09 2
ZFIN|ZDB-GENE-030131-618 - symbol:hnrnpa0l "heterogeneous... 124 3.9e-09 2
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 112 4.5e-09 2
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 109 5.7e-09 2
ZFIN|ZDB-GENE-030131-2249 - symbol:hnrnpa0a "heterogeneou... 116 6.0e-09 2
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 136 6.3e-09 1
GENEDB_PFALCIPARUM|PFD0700c - symbol:PFD0700c "RNA bindin... 139 7.0e-09 1
UNIPROTKB|Q8I1U3 - symbol:PFD0700c "RNA binding protein, ... 139 7.0e-09 1
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 139 7.1e-09 1
ZFIN|ZDB-GENE-030131-6154 - symbol:hnrnpa0b "heterogeneou... 112 7.2e-09 2
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 115 8.3e-09 2
UNIPROTKB|Q32P51 - symbol:HNRNPA1L2 "Heterogeneous nuclea... 121 8.4e-09 2
UNIPROTKB|E2RK48 - symbol:MSI1 "Uncharacterized protein" ... 138 9.2e-09 1
ZFIN|ZDB-GENE-030131-2891 - symbol:puf60a "poly-U binding... 115 9.2e-09 2
FB|FBgn0011666 - symbol:msi "musashi" species:7227 "Droso... 141 1.1e-08 1
UNIPROTKB|K7EJ88 - symbol:DAZAP1 "DAZ-associated protein ... 136 1.2e-08 1
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 130 1.2e-08 1
UNIPROTKB|F6RSR1 - symbol:HNRNPA0 "Uncharacterized protei... 115 1.3e-08 2
POMBASE|SPAC25G10.01 - symbol:SPAC25G10.01 "RNA-binding p... 134 1.6e-08 1
UNIPROTKB|E9PQ56 - symbol:PUF60 "Poly(U)-binding-splicing... 109 1.7e-08 2
ZFIN|ZDB-GENE-060224-1 - symbol:hnrnpa3 "heterogeneous nu... 113 1.8e-08 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 136 1.8e-08 1
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 136 1.9e-08 1
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 136 1.9e-08 1
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 136 1.9e-08 1
UNIPROTKB|H0YEM1 - symbol:PUF60 "Poly(U)-binding-splicing... 109 2.0e-08 2
UNIPROTKB|E2QXH4 - symbol:HNRNPA2B1 "Uncharacterized prot... 108 2.1e-08 2
TAIR|locus:2115169 - symbol:AT4G36960 species:3702 "Arabi... 135 2.1e-08 1
UNIPROTKB|Q5RBU8 - symbol:HNRNPA2B1 "Heterogeneous nuclea... 110 2.3e-08 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 135 2.4e-08 1
WARNING: Descriptions of 409 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 301 (111.0 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 55/77 (71%), Positives = 68/77 (88%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
DEFK+FFMQFG+++EHQIMRDHST RSRGFGF+T+++E VD LLAKGN++EL+G QVE+
Sbjct: 144 DEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQVEI 203
Query: 96 KKAEPKKPN-LPQPSYR 111
KKAEPKKPN + PS R
Sbjct: 204 KKAEPKKPNSVTTPSKR 220
Score = 119 (46.9 bits), Expect = 9.1e-14, Sum P(3) = 9.1e-14
Identities = 23/65 (35%), Positives = 40/65 (61%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
EF F ++G++ + IM+D T + RGFGF+T+ VD ++ + N + + G QVE+K
Sbjct: 57 EFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADSSVVDKVI-QDNHI-IIGKQVEIK 114
Query: 97 KAEPK 101
+ P+
Sbjct: 115 RTIPR 119
Score = 65 (27.9 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 191 EPSSLGYSGRYGGFNRGYDVTG 212
EP+ LGYSGRYGG GY+ G
Sbjct: 290 EPA-LGYSGRYGGGGGGYNRGG 310
Score = 42 (19.8 bits), Expect = 9.6e-33, Sum P(3) = 9.6e-33
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 191 EPSSLGYSGRYGGFNRGYDVTG 212
EP GY G G + GY +G
Sbjct: 333 EPGG-GYGGPSGSYGGGYGSSG 353
Score = 41 (19.5 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 196 GYSGRYGGFNRG 207
GY G +GG+ G
Sbjct: 267 GYGGEFGGYGGG 278
Score = 40 (19.1 bits), Expect = 4.0e-35, Sum P(3) = 4.0e-35
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 274 YHPYGR 279
YHPYGR
Sbjct: 418 YHPYGR 423
Score = 34 (17.0 bits), Expect = 6.5e-32, Sum P(3) = 6.5e-32
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 196 GYSGRYGGF 204
G SG YGG+
Sbjct: 260 GRSGGYGGY 268
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 264 (98.0 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 52/88 (59%), Positives = 68/88 (77%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
G+ T VTE DE KDFF ++G+V EHQ++RDH T+RSRGFGF+ FD+E+ VD+LL+KG
Sbjct: 115 GIPST-VTE---DELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKG 170
Query: 84 NKLELAGAQVEVKKAEPKKP-NLPQPSY 110
N +++A QVE+KKAEPKK N PSY
Sbjct: 171 NMIDMADTQVEIKKAEPKKSLNRSPPSY 198
Score = 120 (47.3 bits), Expect = 5.4e-12, Sum P(3) = 5.4e-12
Identities = 25/64 (39%), Positives = 37/64 (57%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
F F ++G++ + IMRD T + RGFGFITF VD ++ + + G QVE+K+
Sbjct: 35 FNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIEDTHVIN--GKQVEIKR 92
Query: 98 AEPK 101
PK
Sbjct: 93 TIPK 96
Score = 49 (22.3 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 193 SSLGYSGRYGGFNRGY 208
S Y G YGGF+ GY
Sbjct: 210 SYASYGGPYGGFDGGY 225
Score = 47 (21.6 bits), Expect = 8.4e-29, Sum P(3) = 8.4e-29
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 191 EPSSLGYSGRYGGFNRGYDVTG 212
EP LGYS R+G + G+ G
Sbjct: 275 EPP-LGYSSRFGPYGSGFGGEG 295
Score = 34 (17.0 bits), Expect = 5.2e-29, Sum P(3) = 5.2e-29
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 274 YHPYGR 279
YHPY R
Sbjct: 353 YHPYAR 358
Score = 34 (17.0 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 197 YSGRYGGFNRGY 208
Y G G + RGY
Sbjct: 336 YEGAGGPYGRGY 347
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 223 (83.6 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 48/101 (47%), Positives = 63/101 (62%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 72
I + T+K+ L P+ E DE K++F +GD+ EHQIM DH T RSRGFGF+TF T
Sbjct: 150 IKAVSKTRKIFVGGLPPLLEE--DELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQT 207
Query: 73 EQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRY 113
E +VD L + G EL QVE+K+AEPK+ S+R Y
Sbjct: 208 EDSVDRLFSDGKVHELGDKQVEIKRAEPKRTGRDN-SFRSY 247
Score = 103 (41.3 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 21/70 (30%), Positives = 39/70 (55%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + F ++F +FG+V + IM D T RGFGF+TF + +L + + ++
Sbjct: 76 ETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEEDHVID--DR 133
Query: 92 QVEVKKAEPK 101
+V++K+ P+
Sbjct: 134 KVDLKRTLPR 143
Score = 36 (17.7 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G+ G GG+ GY G
Sbjct: 292 GFYGYGGGYGYGYGYGG 308
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 172 (65.6 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 30 VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89
VTE +FK +F QFG + +M DH+T R RGFGFIT+D+E+AV+ +L K EL
Sbjct: 119 VTE---SDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFH-ELN 174
Query: 90 GAQVEVKKAEPKKPNLPQPS 109
G VEVK+A PK+ + P PS
Sbjct: 175 GKMVEVKRAVPKELS-PGPS 193
Score = 124 (48.7 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ K++F FG+V E I++D +T R+RGFGF+ F + AV +++ K + G VE
Sbjct: 20 ERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVF-ADPAVAEIVIT-EKHNIDGRLVEA 77
Query: 96 KKAEPK 101
KKA P+
Sbjct: 78 KKAVPR 83
Score = 37 (18.1 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 7 EILTMFINRQTTTQKMTGLSLTPVTEPALDE 37
E++ I + TT + G +PA+ E
Sbjct: 31 EVIEAVILKDRTTGRARGFGFVVFADPAVAE 61
Score = 34 (17.0 bits), Expect = 1.1e-15, Sum P(3) = 1.1e-15
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 194 SLGYSGRYGGFNRGY 208
++GY G GG N +
Sbjct: 296 AVGYEGGNGGGNSSF 310
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 176 (67.0 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 37/73 (50%), Positives = 51/73 (69%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
EFK++F QFG + + +M DH+T R RGFGFITFD+E++VD +L K EL G VEVK
Sbjct: 137 EFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKTFH-ELNGKMVEVK 195
Query: 97 KAEPKKPNLPQPS 109
+A PK+ + P+
Sbjct: 196 RAVPKELSSTTPN 208
Score = 120 (47.3 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 28/81 (34%), Positives = 46/81 (56%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ +++F ++GD+ E IMRD +T R+RGFGFI F + ++ +K + G VE
Sbjct: 29 ERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM--DKHIIDGRTVEA 86
Query: 96 KKAEPKKPNLPQPSYRRYNNP 116
KKA P+ Q +R+ +P
Sbjct: 87 KKAVPRDD---QQVLKRHASP 104
Score = 37 (18.1 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 193 SSLGYSGRYGGFNR 206
+S GYSG Y NR
Sbjct: 434 ASEGYSGNYNVGNR 447
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 173 (66.0 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 36/67 (53%), Positives = 48/67 (71%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+EFK++F QFG + + +M DH+T R RGFGFITFD++ AVD +L K EL G VEV
Sbjct: 124 EEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLHKTFH-ELNGKLVEV 182
Query: 96 KKAEPKK 102
K+A PK+
Sbjct: 183 KRAVPKE 189
Score = 128 (50.1 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 30/81 (37%), Positives = 45/81 (55%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ +D+F +GDV E IMRD +T R+RGFGFI F + V + + + + G VE
Sbjct: 20 ERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVF-ADPCVSERVIMDKHI-IDGRTVEA 77
Query: 96 KKAEPKKPNLPQPSYRRYNNP 116
KKA P+ Q +R+ +P
Sbjct: 78 KKAVPRDD---QQVLKRHASP 95
Score = 36 (17.7 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 192 PSSLGYSGRYGGFNRGY 208
PSS S GF R Y
Sbjct: 343 PSSSAVSNDNNGFGRNY 359
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 159 (61.0 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 35/74 (47%), Positives = 50/74 (67%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
TE + +E K +F QFG++ E ++ D S+ +GF FITFD+EQ V DLL K K ++AG
Sbjct: 145 TEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAG 203
Query: 91 AQVEVKKAEPKKPN 104
+V+VK+A PK N
Sbjct: 204 KEVDVKRATPKPEN 217
Score = 106 (42.4 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +D F ++G+++ + D T RSRGF FI F +A+D + A + + +V+ K
Sbjct: 71 ELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHI-INSKKVDPK 129
Query: 97 KAEPK 101
KA+ +
Sbjct: 130 KAKAR 134
Score = 44 (20.5 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 196 GYSGRYGGFNRG 207
GY G YGG+ G
Sbjct: 256 GYGGGYGGYGAG 267
Score = 44 (20.5 bits), Expect = 8.0e-14, Sum P(2) = 8.0e-14
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY GR GG+N +D G
Sbjct: 237 GYGGR-GGYNNQWDGQG 252
Score = 40 (19.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 196 GYSGRY-GGFNRGYD 209
GY Y GG+ GYD
Sbjct: 268 GYGDYYAGGYYNGYD 282
Score = 39 (18.8 bits), Expect = 2.6e-13, Sum P(2) = 2.6e-13
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 199 GRYGGFNRGYDVTG 212
G Y G++ GYD G
Sbjct: 276 GYYNGYDYGYDGYG 289
Score = 38 (18.4 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 199 GRYGGFNRGY 208
G YGG+ GY
Sbjct: 252 GSYGGYGGGY 261
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 165 (63.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 34/69 (49%), Positives = 48/69 (69%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+EF+ +F +G V + IM D +T+R RGFGF++FD+E AVD +L K +L+G QVEV
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH-DLSGKQVEV 182
Query: 96 KKAEPKKPN 104
K+A PK N
Sbjct: 183 KRALPKDAN 191
Score = 110 (43.8 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ ++ F +G+V + +MRD T R RGFGF+ F +D +L + + ++ +V+V
Sbjct: 20 DKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDTR--EVDV 77
Query: 96 KKA 98
K+A
Sbjct: 78 KRA 80
Score = 37 (18.1 bits), Expect = 2.1e-13, Sum P(2) = 2.1e-13
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 196 GYSGRYGGFNRG 207
GY+G GG+ G
Sbjct: 262 GYTGSAGGYGAG 273
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 161 (61.7 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Query: 33 PAL--DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
PAL DEF+ +F +G V + IM D +T R RGFGF++FD+E +VD +L K +L G
Sbjct: 119 PALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFH-DLNG 177
Query: 91 AQVEVKKAEPKKPN 104
QVEVK+A PK N
Sbjct: 178 KQVEVKRALPKDAN 191
Score = 112 (44.5 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 22/68 (32%), Positives = 39/68 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F FG+V + +MR+ +T R RGFGF+ F +D +L +K + V+VK+A
Sbjct: 23 REYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQ--DKHHIDNRDVDVKRA 80
Query: 99 EPKKPNLP 106
++ P
Sbjct: 81 MSREEQSP 88
Score = 38 (18.4 bits), Expect = 4.3e-13, Sum P(2) = 4.3e-13
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 7 EILTMFINRQTTTQKMTGLSLTPVTEPAL 35
E+L + + R+ T + G ++PA+
Sbjct: 31 EVLQVTVMREKATGRPRGFGFVAFSDPAV 59
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 135 (52.6 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ + FF ++G V E IM D +SRGFGF++F+ E +V+ + + + L G QVE+K
Sbjct: 111 DLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNE-RYINLNGKQVEIK 169
Query: 97 KAEPK 101
KAEP+
Sbjct: 170 KAEPR 174
Score = 109 (43.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + +F +FGD+ + +M+++ + RSRGFGF+TF V+ +L G L G
Sbjct: 17 ETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQNGPHT-LDGR 75
Query: 92 QVEVKKAEPKKPNLPQ 107
++ K P+ P+
Sbjct: 76 TIDPKPCNPRTLQKPK 91
Score = 41 (19.5 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 193 SSLGYSGRYGGFNRGYD 209
S G YGG+ GYD
Sbjct: 366 SKSGSEYDYGGYGSGYD 382
Score = 34 (17.0 bits), Expect = 1.8e-12, Sum P(3) = 1.8e-12
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 100 PKKPNLPQPSYRRYNNPK 117
P P P P + Y P+
Sbjct: 264 PPGPQGPPPQWSNYAGPQ 281
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 174 (66.3 bits), Expect = 2.6e-12, P = 2.6e-12
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 20 QKMTGLSLTPVTEPALDE-FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD 78
+K + + + V++ A ++ FK FFMQFG V + +M D T R RGFGF+TFD+E AV+
Sbjct: 191 EKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSEAAVEA 250
Query: 79 LLAKGNKLELAGAQVEVKKAEPK 101
L++ LE+ G +EVKKA+P+
Sbjct: 251 ALSR--PLEILGKTIEVKKAQPR 271
Score = 143 (55.4 bits), Expect = 5.7e-09, P = 5.7e-09
Identities = 28/63 (44%), Positives = 44/63 (69%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
K++F QFG+VQE +MRD +T RSRGFGF+TF + V+ ++ K + L+ G ++ K+A
Sbjct: 127 KEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPKTVNTVMVKEHYLD--GKIIDPKRA 184
Query: 99 EPK 101
P+
Sbjct: 185 IPR 187
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 156 (60.0 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 30 VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LEL 88
VTE +EF +FF QFG + + Q+M D T RSRGFGF+T+D+ AVD + NK L L
Sbjct: 257 VTE---EEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSPAAVDKVCV--NKYLTL 311
Query: 89 AGAQVEVKKAEPK 101
G +EVK+A P+
Sbjct: 312 KGKAMEVKRAAPR 324
Score = 124 (48.7 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE AL F ++G++ ++ IM+D +T RSRGFGF+TF+ ++VD LL
Sbjct: 168 GLSWD-TTEEAL---VSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKSVDALLKDR 223
Query: 84 NKLELAGAQVEVKKAEPKK 102
+ L+ G ++ K+A K+
Sbjct: 224 HVLD--GKLIDPKRAISKE 240
Score = 34 (17.0 bits), Expect = 7.2e-12, Sum P(2) = 7.2e-12
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 274 YHPYGR 279
YHPY R
Sbjct: 466 YHPYSR 471
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 133 (51.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 26/66 (39%), Positives = 42/66 (63%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
++ + F QFGDV + +I+ D + RSRGFGF+TF E+A+ D + + N EL G + V
Sbjct: 20 EDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITV 79
Query: 96 KKAEPK 101
+A+ +
Sbjct: 80 NEAQSR 85
Score = 37 (18.1 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 191 EPSSLGYSGRYGGFNRGY 208
E S GY GG RGY
Sbjct: 126 ERRSGGYGSGGGGGGRGY 143
Score = 34 (17.0 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 196 GYSGRYGGFNRG 207
GY R GG+ G
Sbjct: 124 GYERRSGGYGSG 135
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 36/98 (36%), Positives = 58/98 (59%)
Query: 5 LTEILTMFINRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRG 64
LT +LT + ++ + GLS T P D +D+F +FG+++E +MRD +T RSRG
Sbjct: 4 LTSVLTSVMFSPSSKMFIGGLSWQ--TSP--DSLRDYFSKFGEIRECMVMRDPTTKRSRG 59
Query: 65 FGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 102
FGF+TF +VD +L + + EL ++ K A P++
Sbjct: 60 FGFVTFADPASVDKVLGQPHH-ELDSKTIDPKVAFPRR 96
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 130 (50.8 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101
F Q+GDV + +I+ D T RSRGFGF+TF E+A+ D + N +L G + V +A+ +
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87
Score = 36 (17.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 196 GYSGRYGGFN-RG 207
GYSG GG++ RG
Sbjct: 130 GYSGGGGGYSSRG 142
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 150 (57.9 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 33/89 (37%), Positives = 54/89 (60%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 73
+ Q T K+ + P P EF++FF Q+G + + Q+M D T +SRGFGF+T+D+
Sbjct: 237 DEQDKTGKIFVGGIGPDVRPK--EFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSA 294
Query: 74 QAVDDLLAKGNK-LELAGAQVEVKKAEPK 101
AVD + NK ++ ++E+K+AEP+
Sbjct: 295 DAVDRVCQ--NKFIDFKDRKIEIKRAEPR 321
Score = 123 (48.4 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 23/66 (34%), Positives = 45/66 (68%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D +++F ++G V + +IM+D +T RSRGFGF++F+ +VD+++ + L+ G ++
Sbjct: 173 DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILD--GKVIDP 230
Query: 96 KKAEPK 101
K+A P+
Sbjct: 231 KRAIPR 236
Score = 34 (17.0 bits), Expect = 4.7e-11, Sum P(2) = 4.7e-11
Identities = 5/6 (83%), Positives = 5/6 (83%)
Query: 274 YHPYGR 279
YHPY R
Sbjct: 529 YHPYNR 534
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 155 (59.6 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 37/92 (40%), Positives = 57/92 (61%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS T L++ K +F +G V++ +M D +T R RGFGF+TFD+++
Sbjct: 131 TKTKKVFIGGLSATST----LEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDE 186
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 106
V D + + + E+ G VE KKA+PK+ LP
Sbjct: 187 -VADKVCEIHFHEINGKMVECKKAQPKEVMLP 217
Score = 143 (55.4 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 29/67 (43%), Positives = 44/67 (65%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ +D+F +FG+V E +MRD +T R+RGFGFITF +VD +L + EL G +++
Sbjct: 59 ENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVL-NNREHELDGKKIDP 117
Query: 96 KKAEPKK 102
K A PK+
Sbjct: 118 KVAFPKR 124
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 156 (60.0 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 38/92 (41%), Positives = 56/92 (60%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS P T L++ K +F QFG +++ +M D T+R RGFGF+TF +E
Sbjct: 115 TRTKKIFVGGLS-APTT---LEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSED 170
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 106
VD + + + E+ VE KKA+PK+ LP
Sbjct: 171 VVDKV-CEIHFHEINNKMVECKKAQPKEVMLP 201
Score = 152 (58.6 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
T P + +D+F ++GD+ E +M+D +T RSRGFGF+TF +VD +L +G EL G
Sbjct: 40 TSP--ESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQGTH-ELDG 96
Query: 91 AQVEVKKAEPKK 102
+V+ K A P++
Sbjct: 97 KKVDPKVAFPRR 108
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 121 (47.7 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D F FGDV + +++ D T RSRGFGF+ F+ E A +++ + EL G + V A
Sbjct: 52 RDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111
Query: 99 EPKKPNLPQ 107
+ P+ P+
Sbjct: 112 NDR-PSAPR 119
Score = 40 (19.1 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 196 GYSGRYGGFNRGYDVTGD 213
G G YGG GY GD
Sbjct: 136 GGGGGYGGGGGGYGGGGD 153
Score = 37 (18.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 196 GYSGRYGGFNRG 207
GYSG GG+ G
Sbjct: 126 GYSGGGGGYGGG 137
Score = 37 (18.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY G GG+ G D G
Sbjct: 140 GYGGGGGGYGGGGDGGG 156
Score = 34 (17.0 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 192 PSSLGYSGRYGGFNRGY 208
P + G G Y G GY
Sbjct: 118 PRAYGGGGGYSGGGGGY 134
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 121 (47.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FGDV + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 91 DLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 148
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 149 KRAKAMKTKEP 159
Score = 100 (40.3 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 168 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 223
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 224 HNVGLSKCEIKVAMSKE 240
Score = 51 (23.0 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 194 SLGYSGR-YGGFNRGYDVTG 212
S GY+ + YGG+ GYD TG
Sbjct: 283 SYGYNSQGYGGYG-GYDYTG 301
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 30/88 (34%), Positives = 54/88 (61%)
Query: 12 FINRQTTTQ-KMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 70
F+ + T +Q K+ SL+ + DE + FF Q+G+++E +++ D T RS+GF FIT+
Sbjct: 9 FLRKMTMSQNKIYVGSLS--YDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITY 66
Query: 71 DTEQAVDDLLAKGNKLELAGAQVEVKKA 98
T+ A + ++K N ++L G ++ V A
Sbjct: 67 GTQDAAQEAVSKANGIDLQGRKIRVNIA 94
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 30/88 (34%), Positives = 54/88 (61%)
Query: 12 FINRQTTTQ-KMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 70
F+ + T +Q K+ SL+ + DE + FF Q+G+++E +++ D T RS+GF FIT+
Sbjct: 9 FLRKMTMSQNKIYVGSLS--YDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITY 66
Query: 71 DTEQAVDDLLAKGNKLELAGAQVEVKKA 98
T+ A + ++K N ++L G ++ V A
Sbjct: 67 GTQDAAQEAVSKANGIDLQGRKIRVNIA 94
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 123 (48.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
K F FG+V E ++ D T RSRGFGF++F E + ++ + + + EL G Q+ V A
Sbjct: 52 KQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA 111
Query: 99 EPKKPNLPQPSY 110
++ + P+ S+
Sbjct: 112 T-ERSSAPRSSF 122
Score = 35 (17.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 193 SSLGYSGRYGGFNRG 207
SS G G YGG G
Sbjct: 120 SSFGGGGGYGGGGGG 134
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 120 (47.3 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 29/75 (38%), Positives = 39/75 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ E AL+ D F FG + E +++D T RSRGFGFITF + D++
Sbjct: 12 GLNFN-TDEQALE---DHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRAM 67
Query: 84 NKLELAGAQVEVKKA 98
N L G Q+ V A
Sbjct: 68 NGESLDGRQIRVDHA 82
Score = 38 (18.4 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 196 GY-SGRY----GGFNRGYDVTGD 213
GY SGRY GG+ GY + D
Sbjct: 111 GYGSGRYDSRPGGYGYGYGRSRD 133
Score = 37 (18.1 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 194 SLGYSGRYGGFNR 206
S YSG GG++R
Sbjct: 131 SRDYSGSQGGYDR 143
Score = 36 (17.7 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 192 PSSLGYS-GR---YGGFNRGYD 209
P GY GR Y G GYD
Sbjct: 121 PGGYGYGYGRSRDYSGSQGGYD 142
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 146 (56.5 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 38 TRTKKIFVGGLSVNTTVE----DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 93
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 94 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 136
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 131 (51.2 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ KD+F +FG+V + I D +T RSRGFGFI F VD +LA+ + L G Q++ K
Sbjct: 110 DLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFILFKEPSGVDKVLAQ-KEHRLDGRQIDPK 168
Query: 97 KAEPKK 102
KA K
Sbjct: 169 KAMAMK 174
Score = 101 (40.6 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 29/100 (29%), Positives = 53/100 (53%)
Query: 11 MFINRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 70
M + ++ + G L P T + +++F FG+++ ++ D +++ RGF FITF
Sbjct: 171 MAMKKEPVKKIFVG-GLNPETTE--ERIREYFGAFGEIETIELPMDPKSNKRRGFVFITF 227
Query: 71 DTEQAVDDLLAK------GNKLELAGAQ--VEVKKAEPKK 102
E+AV +L K G K + +G + E+K A+PK+
Sbjct: 228 KEEEAVKKILEKKYHNVSGTK-DTSGKEGLCEIKIAQPKE 266
Score = 41 (19.5 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 197 YSGRYGGFNRG 207
Y GR+GG RG
Sbjct: 273 YGGRFGGGGRG 283
Score = 39 (18.8 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 196 GYSGRYGGF--NRG 207
GY G YGG+ N+G
Sbjct: 333 GYYGGYGGYDYNQG 346
Score = 38 (18.4 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 197 YSGRY-GGFNRGYD 209
YSG Y GG+ GYD
Sbjct: 330 YSGGYYGGYG-GYD 342
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 121 (47.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FGDV + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 110 DLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 167
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 168 KRAKAMKTKEP 178
Score = 100 (40.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 187 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 242
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 243 HNVGLSKCEIKVAMSKE 259
Score = 51 (23.0 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 194 SLGYSGR-YGGFNRGYDVTG 212
S GY+ + YGG+ GYD TG
Sbjct: 302 SYGYNSQGYGGYG-GYDYTG 320
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 121 (47.7 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FGDV + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 110 DLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 167
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 168 KRAKAMKTKEP 178
Score = 100 (40.3 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 187 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 242
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 243 HNVGLSKCEIKVAMSKE 259
Score = 51 (23.0 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 194 SLGYSGR-YGGFNRGYDVTG 212
S GY+ + YGG+ GYD TG
Sbjct: 302 SYGYNSQGYGGYG-GYDYTG 320
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 148 (57.2 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS V E + K +F QFG V++ +M D +T+R RGFGF+TF+ E
Sbjct: 46 TRTKKIFVGGLSANTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 101
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 102 VVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 136
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 121 (47.7 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L+E F ++G + + ++RD T RSRGFGF+TF+ + D +A
Sbjct: 29 GLSYD-TTEQSLEEA---FSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 84 NKLELAGAQVEVKKA 98
N ++ G + V +A
Sbjct: 85 NGKQVDGRMIRVDEA 99
Score = 41 (19.5 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 196 GYSGRYGGFNRG 207
GYS R GG++ G
Sbjct: 183 GYSNRSGGYSSG 194
Score = 38 (18.4 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 194 SLGYSGRYGGFNRGY 208
S G YGG +RGY
Sbjct: 149 SYGGDRSYGGGDRGY 163
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 125 (49.1 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ KD+F +FG+V + I D +T RSRGFGFI F +VD +L + + L G Q++ K
Sbjct: 60 DLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ-KEHRLDGRQIDPK 118
Query: 97 KA 98
+A
Sbjct: 119 RA 120
Score = 122 (48.0 bits), Expect = 6.7e-10, Sum P(2) = 6.7e-10
Identities = 30/92 (32%), Positives = 51/92 (55%)
Query: 11 MFINRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 70
M I ++ + G L P T ++ +++F FG+++ ++ D TS+ RGF FITF
Sbjct: 121 MAIKKEPVKKIFVG-GLNPETTE--EKIREYFGSFGEIETIELPTDPKTSKRRGFVFITF 177
Query: 71 DTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 102
E AV +L K + G++ E+K A+PK+
Sbjct: 178 KEEFAVKKILEKKYH-NVCGSKCEIKIAQPKE 208
Score = 44 (20.5 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 197 YSGRYGGFNRGYDVT 211
YS Y G+ GYD T
Sbjct: 272 YSSGYYGYGSGYDYT 286
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 119 (46.9 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 32/89 (35%), Positives = 50/89 (56%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GL+ TE +L++ F ++G V E +++D + RSRGFGF+TF+ E A D ++A
Sbjct: 12 GLNFE-TTEESLEQV---FSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A K N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAG-KSSNDRRGGYR 94
Score = 38 (18.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 196 GYSGRYGGFNRGY 208
G GR GG +RGY
Sbjct: 106 GGRGRGGGGDRGY 118
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 117 (46.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 14 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 71
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 72 KRAKAMKTKEP 82
Score = 101 (40.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 91 LSPDT-PE-EKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 146
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 147 HNVGLSKCEIKVAMSKE 163
Score = 48 (22.0 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 208 GYNSQGYGGYG-GYDYTG 224
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 117 (46.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 15 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 72
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 73 KRAKAMKTKEP 83
Score = 101 (40.6 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 92 LSPDT-PE-EKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 147
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 148 HNVGLSKCEIKVAMSKE 164
Score = 48 (22.0 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 209 GYNSQGYGGYG-GYDYTG 225
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 119 (46.9 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 32/76 (42%), Positives = 41/76 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLAK 82
GL+ E AL+ D F FG + E +++D T RSRGFGFITF D E A D + A
Sbjct: 12 GLNFN-TDEQALE---DHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRAM 67
Query: 83 GNKLELAGAQVEVKKA 98
+ L G Q+ V A
Sbjct: 68 NGE-SLDGRQIRVDHA 82
Score = 37 (18.1 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 196 GY-SGRY----GGFNRGY 208
GY SGRY GG+ GY
Sbjct: 111 GYGSGRYDSRPGGYGYGY 128
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 118 (46.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ E AL+ D F FG + E +++D T RSRGFGFITF + D +
Sbjct: 12 GLNFN-TDEQALE---DHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 84 NKLELAGAQVEVKKA 98
N L G Q+ V A
Sbjct: 68 NGESLDGRQIRVDHA 82
Score = 38 (18.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 196 GY-SGRY----GGFNRGYDVTGD 213
GY SGRY GG+ GY + D
Sbjct: 109 GYGSGRYDSRPGGYGYGYGRSRD 131
Score = 37 (18.1 bits), Expect = 5.3e-10, Sum P(2) = 5.3e-10
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 194 SLGYSGRYGGFNR 206
S YSG GG++R
Sbjct: 129 SRDYSGSQGGYDR 141
Score = 36 (17.7 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 192 PSSLGYS-GR---YGGFNRGYD 209
P GY GR Y G GYD
Sbjct: 119 PGGYGYGYGRSRDYSGSQGGYD 140
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 118 (46.6 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 29/75 (38%), Positives = 38/75 (50%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ E AL+ D F FG + E +++D T RSRGFGFITF + D +
Sbjct: 12 GLNFN-TDEQALE---DHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAM 67
Query: 84 NKLELAGAQVEVKKA 98
N L G Q+ V A
Sbjct: 68 NGESLDGRQIRVDHA 82
Score = 38 (18.4 bits), Expect = 4.2e-10, Sum P(2) = 4.2e-10
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 196 GY-SGRY----GGFNRGYDVTGD 213
GY SGRY GG+ GY + D
Sbjct: 111 GYGSGRYDSRPGGYGYGYGRSRD 133
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 137 (53.3 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 31/74 (41%), Positives = 46/74 (62%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 118 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 176
Query: 97 KAEPK--KPNLPQP 108
+AEP+ K P P
Sbjct: 177 RAEPRDSKSQTPGP 190
Score = 109 (43.4 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 14 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 72
Query: 96 KKAEPK--KPNLPQP 108
K P+ +P +P
Sbjct: 73 KPCTPRGMQPERTRP 87
Score = 34 (17.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 193 SSLGYSGRYGGFNRGY 208
S GY GF +G+
Sbjct: 339 SQFGYGQDLSGFGQGF 354
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 117 (46.2 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 45 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 102
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 103 KRAKAMKTKEP 113
Score = 100 (40.3 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 122 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 177
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 178 HNVGLSKCEIKVAMSKE 194
Score = 48 (22.0 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 239 GYNSQGYGGYG-GYDYTG 255
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 150 (57.9 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 37/98 (37%), Positives = 61/98 (62%)
Query: 5 LTEILTMFINRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRG 64
L E+ + + +T + GLS + TE +EFK +F +FG + +M D T+R RG
Sbjct: 107 LREMSSNGVTSRTKKIFVGGLS-SNTTE---EEFKSYFERFGRTTDVVVMHDGVTNRPRG 162
Query: 65 FGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 102
FGF+T+D+E +V+ ++ + N EL+ +VEVK+A PK+
Sbjct: 163 FGFVTYDSEDSVE-VVMQSNFHELSDKRVEVKRAIPKE 199
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 148 (57.2 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS V E + K +F QFG V++ +M D +T+R RGFGF+TF+ E
Sbjct: 85 TRTKKIFVGGLSANTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 140
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 141 VVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 175
Score = 142 (55.0 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
T P D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L + + EL
Sbjct: 10 TSP--DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDS 66
Query: 91 AQVEVKKAEPKK 102
++ K A P++
Sbjct: 67 KTIDPKVAFPRR 78
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 150 (57.9 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 32/72 (44%), Positives = 45/72 (62%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +D+F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 128 ELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEAEQSVDQAVNM-HFHDIMGKKVEVK 186
Query: 97 KAEPKKPNLPQP 108
KAEP+ P P
Sbjct: 187 KAEPRDSKAPAP 198
Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ +++F Q+G+V + IM+D ST++SRGFGF+ F V +L K + L+ G ++
Sbjct: 25 ETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDTKPHNLD--GRNID 82
Query: 95 VKKAEPK 101
K P+
Sbjct: 83 PKPCTPR 89
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 148 (57.2 bits), Expect = 5.8e-10, P = 5.8e-10
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS V E + K +F QFG V++ +M D +T+R RGFGF+TF+ E
Sbjct: 107 TRTKKIFVGGLSANTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 163 VVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 142 (55.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
T P D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L + + EL
Sbjct: 32 TSP--DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDS 88
Query: 91 AQVEVKKAEPKK 102
++ K A P++
Sbjct: 89 KTIDPKVAFPRR 100
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 148 (57.2 bits), Expect = 6.7e-10, P = 6.7e-10
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS V E + K +F QFG V++ +M D +T+R RGFGF+TF+ E
Sbjct: 107 TRTKKIFVGGLSANTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 163 VVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 142 (55.0 bits), Expect = 3.0e-09, P = 3.0e-09
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
T P D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L + + EL
Sbjct: 32 TSP--DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDS 88
Query: 91 AQVEVKKAEPKK 102
++ K A P++
Sbjct: 89 KTIDPKVAFPRR 100
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 120 (47.3 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 22/61 (36%), Positives = 39/61 (63%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101
F ++GDV + +I+ D T RSRGFGF+TF +++A+ + N +L G + V +A+ +
Sbjct: 26 FSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
Query: 102 K 102
+
Sbjct: 86 R 86
Score = 34 (17.0 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 196 GYSGRYGGFNRGY 208
G G YGG GY
Sbjct: 135 GGGGGYGGGGGGY 147
Score = 34 (17.0 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 196 GYSGRYGGFNRGY 208
G G YGG GY
Sbjct: 107 GGGGGYGGGGGGY 119
>UNIPROTKB|F1M0Z9 [details] [associations]
symbol:F1M0Z9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 IPI:IPI00393308
Ensembl:ENSRNOT00000034921 Uniprot:F1M0Z9
Length = 71
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L + + EL ++
Sbjct: 1 DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHH-ELDSKTIDP 59
Query: 96 KKAEPKK 102
K A P++
Sbjct: 60 KVAFPRR 66
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 117 (46.2 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 60 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 117
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 118 KRAKAMKTKEP 128
Score = 100 (40.3 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 137 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 192
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 193 HNVGLSKCEIKVAMSKE 209
Score = 48 (22.0 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 254 GYNSQGYGGYG-GYDYTG 270
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 148 (57.2 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 38/97 (39%), Positives = 57/97 (58%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS + V E + K +F QFG V++ +M D +T+R RGFGF+TF+ E
Sbjct: 107 TRTKKIFVGGLSASTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 163 IVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/72 (43%), Positives = 47/72 (65%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
T P D +D+F +FG+++E +MRD +T RSRGFGFITF +VD +LA+ + EL
Sbjct: 32 TSP--DSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFADVSSVDKVLAQPHH-ELDS 88
Query: 91 AQVEVKKAEPKK 102
++ K A P++
Sbjct: 89 KTIDPKVAFPRR 100
>TAIR|locus:2179939 [details] [associations]
symbol:AtRZ-1c "AtRZ-1c" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IEP]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002688 GO:GO:0005730
GO:GO:0000166 GO:GO:0046872 GO:GO:0009409 GO:GO:0009414
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000276232 HSSP:Q14103 KO:K12885
ProtClustDB:CLSN2718554 EMBL:AY092975 EMBL:AY114645 IPI:IPI00520891
RefSeq:NP_196048.1 UniGene:At.33149 ProteinModelPortal:Q8RWN5
SMR:Q8RWN5 IntAct:Q8RWN5 STRING:Q8RWN5 PRIDE:Q8RWN5
EnsemblPlants:AT5G04280.1 GeneID:830307 KEGG:ath:AT5G04280
TAIR:At5g04280 InParanoid:Q8RWN5 OMA:ESIREMH PhylomeDB:Q8RWN5
ArrayExpress:Q8RWN5 Genevestigator:Q8RWN5 Uniprot:Q8RWN5
Length = 310
Score = 130 (50.8 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 30/76 (39%), Positives = 46/76 (60%)
Query: 27 LTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85
L+P VT+ L+ F +FGD+ + QIM + T RSRGFGFITF +A+D+ + + +
Sbjct: 14 LSPEVTDRDLERA---FSRFGDILDCQIMLERDTGRSRGFGFITFADRRAMDESIREMHG 70
Query: 86 LELAGAQVEVKKAEPK 101
+ + V +AEPK
Sbjct: 71 RDFGDRVISVNRAEPK 86
Score = 34 (17.0 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 199 GRYGGFNRGYDVTG 212
G GG + GY + G
Sbjct: 96 GSRGGRDSGYSIAG 109
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 148 (57.2 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS V E + K +F QFG V++ +M D +T+R RGFGF+TF+ E
Sbjct: 107 TRTKKIFVGGLSANTVVE----DVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENED 162
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
V+ + + + E+ VE KKA+PK+ P P R
Sbjct: 163 VVEKV-CEIHFHEINNKMVECKKAQPKEVMFP-PGTR 197
Score = 146 (56.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 30/72 (41%), Positives = 47/72 (65%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
T P D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +LA+ + EL
Sbjct: 32 TSP--DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADAASVDKVLAQPHH-ELDS 88
Query: 91 AQVEVKKAEPKK 102
++ K A P++
Sbjct: 89 KTIDPKVAFPRR 100
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 146 (56.5 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 73 TRTKKIFVGGLSVNTTVE----DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 129 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 171
Score = 130 (50.8 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+ +E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 4 REYFGQFGEEKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 62
Query: 99 EPKK 102
P++
Sbjct: 63 FPRR 66
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 146 (56.5 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 86 TRTKKIFVGGLSVNTTVE----DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 141
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 142 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 184
Score = 136 (52.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 17 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 75
Query: 99 EPKK 102
P++
Sbjct: 76 FPRR 79
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 146 (56.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 106 TRTKKIFVGGLSVNTTVE----DVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 162 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 95
Query: 99 EPKK 102
P++
Sbjct: 96 FPRR 99
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 145 (56.1 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 73 TRTKKIFVGGLSVNTTVE----DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 128
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 129 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 171
Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 4 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 62
Query: 99 EPKK 102
P++
Sbjct: 63 FPRR 66
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 117 (46.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 112 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 169
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 170 KRAKAMKTKEP 180
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 189 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 48 (22.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 117 (46.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 112 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 169
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 170 KRAKAMKTKEP 180
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 189 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 48 (22.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 117 (46.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 112 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 169
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 170 KRAKAMKTKEP 180
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 189 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 48 (22.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 117 (46.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 112 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 169
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 170 KRAKAMKTKEP 180
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 189 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 244
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 245 HNVGLSKCEIKVAMSKE 261
Score = 48 (22.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 306 GYNSQGYGGYG-GYDYTG 322
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 106 TRTKKIFVGGLSVNTTVE----DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 162 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 95
Query: 99 EPKK 102
P++
Sbjct: 96 FPRR 99
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 106 TRTKKIFVGGLSVNTTVE----DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 162 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 95
Query: 99 EPKK 102
P++
Sbjct: 96 FPRR 99
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 145 (56.1 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF++E
Sbjct: 106 TRTKKIFVGGLSVNTTVE----DVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 162 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 95
Query: 99 EPKK 102
P++
Sbjct: 96 FPRR 99
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 147 (56.8 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+EF++FF QFG V + +M D T R RGFGF+T++ E AV+ +++ + + G VEV
Sbjct: 261 EEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQPY-ITIHGKPVEV 319
Query: 96 KKAEPK 101
K+A PK
Sbjct: 320 KRATPK 325
Score = 146 (56.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 27/67 (40%), Positives = 47/67 (70%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D +D+F QFG+V + +MRD +T RSRGFGF+TF + V+++++K + L+ G ++
Sbjct: 177 DSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSKEHHLD--GKIIDP 234
Query: 96 KKAEPKK 102
K+A P++
Sbjct: 235 KRAIPRE 241
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 120 (47.3 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F FG++ + I+ D T + RGF F+ FD VD ++ + + +L G V+VKKA
Sbjct: 139 RDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ-KQHQLNGKMVDVKKA 197
Query: 99 EPKK 102
PK+
Sbjct: 198 LPKQ 201
Score = 113 (44.8 bits), Expect = 9.5e-09, Sum P(2) = 9.5e-09
Identities = 29/94 (30%), Positives = 50/94 (53%)
Query: 17 TTTQKMTGLSLTPVTEPALDE-FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQA 75
T + M L + + DE K F ++G++ + +M+D T RSRGFGFIT+
Sbjct: 25 TEPEHMRKLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSM 84
Query: 76 VDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPS 109
+D+ K ++ G VE K+A P++ ++ P+
Sbjct: 85 IDEA-QKSRPHKIDGRVVEPKRAVPRQ-DIDSPN 116
Score = 45 (20.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 196 GYSGRYGGFNRGYDVTGD 213
G G YGG N+G++ G+
Sbjct: 344 GNQGNYGGNNQGFNNGGN 361
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 144 (55.7 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
KD+F +FG+V+E +MRD T RSRGFGF+TF + VD +LA+ + EL ++ K A
Sbjct: 37 KDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVDQAGVDKVLAQ-TRHELDSKTIDPKVA 95
Query: 99 EPKK 102
P++
Sbjct: 96 FPRR 99
Score = 143 (55.4 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 37/97 (38%), Positives = 55/97 (56%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QFG V + +M D +T+R RGFGF+TF+ E
Sbjct: 106 TRTKKIFVGGLSVNTTIE----DVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENED 161
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
V+ + + + E+ VE KKA+PK+ P S R
Sbjct: 162 VVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSSR 197
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 127 (49.8 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D ++F+ QFG++ + +MRD +T RSRGFGF+TF + VD + + + + G V+
Sbjct: 37 DLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDP 95
Query: 96 KKAEPK 101
K+A P+
Sbjct: 96 KRAVPR 101
Score = 111 (44.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/89 (28%), Positives = 49/89 (55%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALDEF-KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 72
NR + L ++ V E ++ ++F ++G V + +I+ D +T + RGFGF+TFD
Sbjct: 105 NRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDD 164
Query: 73 EQAVDDLLAKGNKLELAGAQVEVKKAEPK 101
+VD + + + + + G + +V+K K
Sbjct: 165 HDSVDQCVLQKSHM-VNGHRCDVRKGLSK 192
Score = 36 (17.7 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 196 GYSGRYGG 203
GY G YGG
Sbjct: 251 GYGGDYGG 258
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 139 (54.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 26/62 (41%), Positives = 43/62 (69%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D F ++G + E +++ D + RSRGFGFITFD ++A+D+ +A N ++L G + V KA
Sbjct: 24 RDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKA 83
Query: 99 EP 100
+P
Sbjct: 84 QP 85
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 115 (45.5 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E ++ +++F +FG+++ ++ D T++ RGF FITF E V +L K ++G+
Sbjct: 94 EATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFH-NVSGS 152
Query: 92 QVEVKKAEPKK 102
+ E+K A+PK+
Sbjct: 153 KCEIKVAQPKE 163
Score = 114 (45.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L + + L G ++ K
Sbjct: 15 DLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ-KEHRLDGRLIDPK 73
Query: 97 KAEPKK 102
KA K
Sbjct: 74 KAMAMK 79
Score = 38 (18.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 193 SSLGYSGRYGGFNRG 207
SS G G YGG RG
Sbjct: 171 SSGGGRGSYGGRGRG 185
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 113 (44.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 28/75 (37%), Positives = 38/75 (50%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ E AL+ D F FG + E +++D T RSRGFGFITF + + +
Sbjct: 12 GLNFN-TDEQALE---DHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAM 67
Query: 84 NKLELAGAQVEVKKA 98
N L G Q+ V A
Sbjct: 68 NGESLDGRQIRVDHA 82
Score = 35 (17.4 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 197 YSGRYGGFNRGY 208
Y R GG+ GY
Sbjct: 115 YDSRPGGYGYGY 126
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 116 (45.9 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 24/70 (34%), Positives = 42/70 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ KD+F +FG+V + + D T RSRGFGF+ F ++V+ ++ + + +L G ++ K
Sbjct: 69 DLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESVEKVITQ-KEHKLNGKVIDPK 127
Query: 97 KAEPKKPNLP 106
KA+ K P
Sbjct: 128 KAKAMKTKEP 137
Score = 94 (38.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F +G+V+ ++ ++ T++ RGF FITF E+ V ++ K K
Sbjct: 146 LSPDT-PE-EKIREYFDAYGEVESIELPMENKTNKRRGFCFITFKEEEPVKKIMEK--KY 201
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ EVK A K+
Sbjct: 202 HNIGLSKCEVKVAMSKE 218
Score = 44 (20.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD +G
Sbjct: 265 GYNNQGYGGYG-GYDYSG 281
Score = 35 (17.4 bits), Expect = 2.8e-08, Sum P(2) = 2.8e-08
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 196 GYSGRYGGFNRGY 208
G G YG N+GY
Sbjct: 259 GNYGNYGYNNQGY 271
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 136 (52.9 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 106 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 164
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 165 RAEPRDSKSQAPGQPGASQWGS 186
Score = 100 (40.3 bits), Expect = 0.00060, P = 0.00060
Identities = 22/69 (31%), Positives = 38/69 (55%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G +
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNQKG 82
Query: 96 KKAEPKKPN 104
+++ K N
Sbjct: 83 PRSDNSKSN 91
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 112 (44.5 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 35 (17.4 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 119 GGYGGSGDGYNGFGN 133
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 124 (48.7 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ +D+F QFG +++ Q++ D T + RGFGF+ FD + D + + G +VEV
Sbjct: 111 EHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVMKFH-SICGHKVEV 169
Query: 96 KKAEPKK 102
KKA K+
Sbjct: 170 KKALTKQ 176
Score = 34 (17.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 7/14 (50%), Positives = 7/14 (50%)
Query: 196 GYSGRYGGFNRGYD 209
GY G N GYD
Sbjct: 212 GYQNNGFGNNSGYD 225
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 112 (44.5 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D F FG + E +++D T RSRGFGFITF + + + N L G Q+ V A
Sbjct: 23 EDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRAMNGESLDGRQIRVDHA 82
Score = 34 (17.0 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 199 GRYGGFNRG 207
G +GG+ RG
Sbjct: 92 GAFGGYERG 100
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 109 (43.4 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ E AL+ D F FG + E +++D T RSRGFGFITF + +
Sbjct: 12 GLNFN-TDEQALE---DHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 84 NKLELAGAQVEVKKA 98
N L G Q+ V A
Sbjct: 68 NGESLDGRQIRVDHA 82
Score = 36 (17.7 bits), Expect = 5.7e-09, Sum P(2) = 5.7e-09
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 197 YSGRYGGFNRGYDVTGD 213
Y R GG+ GY + D
Sbjct: 118 YDSRPGGYGYGYGRSRD 134
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 116 (45.9 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D +D F QFG V++ +++ D T + RGFGF+ F+ + D + + + G +VEV
Sbjct: 115 DHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVLKFHM-INGHKVEV 173
Query: 96 KKAEPKK 102
KKA K+
Sbjct: 174 KKALTKQ 180
Score = 41 (19.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 196 GYSGRYGG-FNRGY 208
GY G YGG + GY
Sbjct: 232 GYGGGYGGGYGGGY 245
Score = 41 (19.5 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 196 GYSGRYGG-FNRGY 208
GY G YGG + GY
Sbjct: 228 GYGGGYGGGYGGGY 241
Score = 37 (18.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 196 GYSGRYGGFNRGY 208
GY G YG GY
Sbjct: 240 GYGGGYGDQMEGY 252
Score = 37 (18.1 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 196 GYSGRYGGF-NRG 207
GY GR GG+ N G
Sbjct: 207 GYGGRGGGYGNYG 219
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 136 (52.9 bits), Expect = 6.3e-09, P = 6.3e-09
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 155 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 213
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 214 RAEPRDSKSQAPGQPGASQWGS 235
Score = 112 (44.5 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 69 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 127
Query: 96 KKAEPKKPN 104
K+ P+ N
Sbjct: 128 KQKGPRSDN 136
>GENEDB_PFALCIPARUM|PFD0700c [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070 EMBL:AL844503
HSSP:Q14103 RefSeq:XP_001351452.1 ProteinModelPortal:Q8I1U3
EnsemblProtists:PFD0700c:mRNA GeneID:812564 KEGG:pfa:PFD0700c
EuPathDB:PlasmoDB:PF3D7_0414500 HOGENOM:HOG000282694
ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 139 (54.0 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D + +F FG++ QI+ D S+ RSR FGF+ F E +V +L K + ++ VEV
Sbjct: 212 DTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVL-KHKRHKIYDKMVEV 269
Query: 96 KKAEPKKPNLPQPSYRRYNN 115
+KAEPKKP + S +R NN
Sbjct: 270 RKAEPKKPKM---SIKRSNN 286
>UNIPROTKB|Q8I1U3 [details] [associations]
symbol:PFD0700c "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016070 "RNA
metabolic process" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016070
EMBL:AL844503 HSSP:Q14103 RefSeq:XP_001351452.1
ProteinModelPortal:Q8I1U3 EnsemblProtists:PFD0700c:mRNA
GeneID:812564 KEGG:pfa:PFD0700c EuPathDB:PlasmoDB:PF3D7_0414500
HOGENOM:HOG000282694 ProtClustDB:CLSZ2431852 Uniprot:Q8I1U3
Length = 358
Score = 139 (54.0 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D + +F FG++ QI+ D S+ RSR FGF+ F E +V +L K + ++ VEV
Sbjct: 212 DTLESYFSTFGEIDVVQIVLD-SSGRSRCFGFVVFSNENSVAKVL-KHKRHKIYDKMVEV 269
Query: 96 KKAEPKKPNLPQPSYRRYNN 115
+KAEPKKP + S +R NN
Sbjct: 270 RKAEPKKPKM---SIKRSNN 286
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 139 (54.0 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 32/74 (43%), Positives = 46/74 (62%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E K++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 129 ELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 187
Query: 97 KAEPK--KPNLPQP 108
+AEP+ K P P
Sbjct: 188 RAEPRDSKSQTPGP 201
Score = 109 (43.4 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 82
Query: 96 KKAEPK--KPNLPQP 108
K P+ +P +P
Sbjct: 83 KPCTPRGMQPERSRP 97
>ZFIN|ZDB-GENE-030131-6154 [details] [associations]
symbol:hnrnpa0b "heterogeneous nuclear
ribonucleoprotein A0b" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-6154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12894
EMBL:BC066434 IPI:IPI00507638 RefSeq:NP_999871.1 UniGene:Dr.35374
ProteinModelPortal:Q6NYW8 SMR:Q6NYW8 STRING:Q6NYW8 PRIDE:Q6NYW8
GeneID:334222 KEGG:dre:334222 CTD:334222 InParanoid:Q6NYW8
OrthoDB:EOG4M65KN NextBio:20810313 ArrayExpress:Q6NYW8 Bgee:Q6NYW8
Uniprot:Q6NYW8
Length = 314
Score = 112 (44.5 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ +FF QFG +++ +++ D T + RGFGF+ F+ + D + + + G +VEVK
Sbjct: 114 DLTEFFSQFGMIEKSEVITDKDTGKKRGFGFVHFEDNDSADKAVVLKFHM-INGHKVEVK 172
Query: 97 KAEPKK 102
KA K+
Sbjct: 173 KALTKQ 178
Score = 101 (40.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D + +F QFG++ + ++++ RSR FGF+T+ T + D +A + + G VEV
Sbjct: 22 DGLRSYFEQFGNLTDCVVVQNDQLQRSRCFGFVTYSTSEEADAAMAARPHV-VDGKNVEV 80
Query: 96 KKA 98
K+A
Sbjct: 81 KRA 83
Score = 45 (20.9 bits), Expect = 7.2e-09, Sum P(2) = 7.2e-09
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 196 GYSGRYGGFNRGY 208
GY G YGG + GY
Sbjct: 219 GYGGGYGGNDGGY 231
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 196 GYSGRYGGFNRGY 208
G G YGG+ GY
Sbjct: 208 GRGGGYGGYGGGY 220
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 196 GYSGRYGG-FNRGY 208
GY G YGG + GY
Sbjct: 239 GYGGGYGGGYGGGY 252
Score = 40 (19.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 196 GYSGRYGGFNRGY 208
GY G GG+ GY
Sbjct: 212 GYGGYGGGYGGGY 224
Score = 40 (19.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 196 GYSGRYG--GFNRGY 208
GY G YG G+ GY
Sbjct: 230 GYGGSYGSGGYGGGY 244
Score = 39 (18.8 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 8/14 (57%), Positives = 8/14 (57%)
Query: 196 GYSGRYGGFNRGYD 209
GY G YGG G D
Sbjct: 215 GYGGGYGGGYGGND 228
Score = 37 (18.1 bits), Expect = 4.8e-08, Sum P(2) = 4.8e-08
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY G GG+ Y G
Sbjct: 223 GYGGNDGGYGGSYGSGG 239
Score = 34 (17.0 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 196 GYSGRYGGFNRGY 208
GY G YG GY
Sbjct: 247 GYGGGYGEQMGGY 259
Score = 34 (17.0 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 196 GYSGRYGGFNRGYD 209
GY + GG+ G D
Sbjct: 251 GYGEQMGGYGGGND 264
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 115 (45.5 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E ++ +++F +FG+++ ++ D T++ RGF FITF E V +L K ++G+
Sbjct: 94 EATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKVLEKKFH-NVSGS 152
Query: 92 QVEVKKAEPKK 102
+ E+K A+PK+
Sbjct: 153 KCEIKVAQPKE 163
Score = 114 (45.2 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L + + L G ++ K
Sbjct: 15 DLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ-KEHRLDGRLIDPK 73
Query: 97 KAEPKK 102
KA K
Sbjct: 74 KAMAMK 79
Score = 38 (18.4 bits), Expect = 8.3e-09, Sum P(2) = 8.3e-09
Identities = 9/15 (60%), Positives = 9/15 (60%)
Query: 193 SSLGYSGRYGGFNRG 207
SS G G YGG RG
Sbjct: 171 SSGGGRGSYGGRGRG 185
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 121 (47.7 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 25/74 (33%), Positives = 42/74 (56%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VKGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
PK+ S +R
Sbjct: 181 LPKQEMASASSSQR 194
Score = 105 (42.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNTTPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 35 (17.4 bits), Expect = 8.4e-09, Sum P(2) = 8.4e-09
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 138 (53.6 bits), Expect = 9.2e-09, P = 9.2e-09
Identities = 37/104 (35%), Positives = 57/104 (54%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74
T T+K+ GLS+ E + K +F QF V + +M D +T+R RGFGF+TF++E
Sbjct: 106 TRTKKIFVGGLSVNTTVE----DVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESED 161
Query: 75 AVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
V+ + + + E+ VE KKA+PK+ P S R + P
Sbjct: 162 IVEKV-CEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMP 204
Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F QFG+V+E +MRD T RSRGFGF+TF + VD +LA+ ++ EL ++ K A
Sbjct: 37 REYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ-SRHELDSKTIDPKVA 95
Query: 99 EPKK 102
P++
Sbjct: 96 FPRR 99
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 115 (45.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 24/71 (33%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI +D Q+ D ++ N +L G + V
Sbjct: 204 DDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRV 263
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 264 GKAVTPPMPLL 274
Score = 48 (22.0 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 11 MFINRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
M N Q+T K+ GL LTP + AL + K + M+
Sbjct: 1 MMENGQSTASKL-GLPPLTPEQQEALQKAKKYAME 34
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 141 (54.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 33/94 (35%), Positives = 52/94 (55%)
Query: 14 NRQTTTQKMTGLSLTPVTEP-ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 72
NR K + + V++ + +E K +F QFG V+E ++ D T R RGFGF+TF+
Sbjct: 282 NRPRQANKTKKIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTFEN 341
Query: 73 EQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLP 106
E VD + + + + +VE KKA+PK+ P
Sbjct: 342 EDVVDRV-CEIHFHTIKNKKVECKKAQPKEAVTP 374
Score = 123 (48.4 bits), Expect = 9.6e-07, P = 9.6e-07
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K++F FG V + IM+D T RSRGFGFITF V+ +L K L G +++
Sbjct: 217 DKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEPCTVEKVL-KVPIHTLDGKKIDP 275
Query: 96 KKAEPKKPNLPQ 107
K A PK N P+
Sbjct: 276 KHATPK--NRPR 285
>UNIPROTKB|K7EJ88 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000591830 Uniprot:K7EJ88
Length = 321
Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 71 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 129
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 130 RAEPRDSKSQAPGQPGASQWGS 151
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 24/52 (46%), Positives = 36/52 (69%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82
T P D +D+F +FG+++E +MRD +T RSRGFGF+TF +VD +L +
Sbjct: 32 TSP--DSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 115 (45.5 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 40 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 98
+ F QFG V++ +I+ D + + RGFGF+ F A D + K + ++ G +VEVKKA
Sbjct: 121 EHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQ--GHRVEVKKA 178
Query: 99 EPKK 102
PK+
Sbjct: 179 VPKE 182
Score = 39 (18.8 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 196 GYS--GRYGGFNRGYDVTG 212
GY+ G YGG GY+ G
Sbjct: 221 GYNSYGGYGGGGGGYNAYG 239
>POMBASE|SPAC25G10.01 [details] [associations]
symbol:SPAC25G10.01 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC25G10.01 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG297815 PIR:T38372
RefSeq:XP_001713104.1 ProteinModelPortal:Q10422
EnsemblFungi:SPAC25G10.01.1 GeneID:3361412 KEGG:spo:SPAC25G10.01
OMA:ERAVEAN OrthoDB:EOG4KPXM5 NextBio:20811463 Uniprot:Q10422
Length = 297
Score = 134 (52.2 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
DE + F +FG V +IMR+ T SRGFGF++F T + + N E G + V
Sbjct: 115 DELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNV 174
Query: 96 KKAEPKKPNLPQPS-YRRYN 114
+KA+ +P+ P P Y Y+
Sbjct: 175 QKAKRSRPHSPTPGKYMGYD 194
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 109 (43.4 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 222 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 281
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 282 GKAVTPPMPLL 292
Score = 45 (20.9 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q+T K+ GL LTP + AL + K + M+
Sbjct: 45 NGQSTAAKL-GLPPLTPEQQEALQKAKKYAME 75
>ZFIN|ZDB-GENE-060224-1 [details] [associations]
symbol:hnrnpa3 "heterogeneous nuclear
ribonucleoprotein A3" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-060224-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104376 EMBL:CR848724 IPI:IPI00863016
UniGene:Dr.85855 SMR:B0V1I7 Ensembl:ENSDART00000135273 OMA:IETIDIM
Uniprot:B0V1I7
Length = 312
Score = 113 (44.8 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F +G ++ IM + ST + RGF F+TFD VD ++A+ + EV+KA
Sbjct: 121 REYFECYGKIETIDIMEERSTGKKRGFCFVTFDDHDTVDKIVAQKYHT-INSHNCEVRKA 179
Query: 99 EPKKPNLPQPSYRRY 113
PK+ + S +RY
Sbjct: 180 LPKQ-EMQSSSNQRY 193
Score = 107 (42.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 27/77 (35%), Positives = 44/77 (57%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAG 90
E D + F Q+G + + +MRD + RSRGFGF+T+ + VD + A+ +K++ G
Sbjct: 23 ETTEDSLRAHFEQWGKLTDCVVMRDPANKRSRGFGFVTYSSVSEVDAAMTARPHKVD--G 80
Query: 91 AQVEVKKAEPKKP-NLP 106
VE K+A ++ N P
Sbjct: 81 RVVEPKRAVSREDSNKP 97
Score = 40 (19.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 196 GYSGRYGGFNRGY 208
G+ G YGG GY
Sbjct: 225 GFGGNYGGGPGGY 237
Score = 35 (17.4 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 6/11 (54%), Positives = 8/11 (72%)
Query: 197 YSGRYGGFNRG 207
++GR G F RG
Sbjct: 201 FTGRGGNFGRG 211
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 136 (52.9 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 118 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 176
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 177 RAEPRDSKSQAPGQPGASQWGS 198
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 14 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 72
Query: 96 KKAEPK--KPNLPQPSYRRYNNPK 117
K P+ +P +P P+
Sbjct: 73 KPCTPRGMQPERTRPKEGWQKGPR 96
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 136 (52.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 186
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGS 208
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 82
Query: 96 KKAEPK--KPNLPQPSYRRYNNPK 117
K P+ +P +P P+
Sbjct: 83 KPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 136 (52.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 186
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGS 208
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 82
Query: 96 KKAEPK--KPNLPQPSYRRYNNPK 117
K P+ +P +P P+
Sbjct: 83 KPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 136 (52.9 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 186
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 187 RAEPRDSKSQAPGQPGASQWGS 208
Score = 110 (43.8 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 82
Query: 96 KKAEPK--KPNLPQPSYRRYNNPK 117
K P+ +P +P P+
Sbjct: 83 KPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 109 (43.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 238 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 297
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 298 GKAVTPPMPLL 308
Score = 45 (20.9 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q+T K+ GL LTP + AL + K + M+
Sbjct: 44 NGQSTAAKL-GLPPLTPEQQEALQKAKKYAME 74
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 108 (43.1 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 77 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 134
Query: 98 A 98
A
Sbjct: 135 A 135
Score = 44 (20.5 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 223 GYGNQGGGYGGGYDNYG 239
Score = 38 (18.4 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 286 PGGSGGSGGYGGRSR 300
Score = 35 (17.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 207 SPGYGGGRGGYGGG 220
Score = 35 (17.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 208 PGYGGGRGGYGGGGPGYGNQG 228
>TAIR|locus:2115169 [details] [associations]
symbol:AT4G36960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 KO:K14411
HSSP:Q14103 UniGene:At.4642 UniGene:At.4643 EMBL:AY048286
EMBL:BT000573 IPI:IPI00527793 RefSeq:NP_001154290.1
RefSeq:NP_568011.1 ProteinModelPortal:Q94AC3 SMR:Q94AC3
IntAct:Q94AC3 PaxDb:Q94AC3 PRIDE:Q94AC3 EnsemblPlants:AT4G36960.1
EnsemblPlants:AT4G36960.2 GeneID:829850 KEGG:ath:AT4G36960
TAIR:At4g36960 HOGENOM:HOG000070627 InParanoid:Q94AC3 OMA:EITDLYM
PhylomeDB:Q94AC3 ProtClustDB:CLSN2689792 Genevestigator:Q94AC3
Uniprot:Q94AC3
Length = 379
Score = 135 (52.6 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 30/74 (40%), Positives = 46/74 (62%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D KD+ +FGD+++ +M+D ST RSRGFG++TF + + + L KG L +EV
Sbjct: 17 DGLKDYMSKFGDLEDCIVMKDRSTGRSRGFGYVTFASAEDAKNAL-KGEHF-LGNRILEV 74
Query: 96 KKAEPKKPNLPQPS 109
K A PK+ + QP+
Sbjct: 75 KVATPKE-EMRQPA 87
Score = 125 (49.1 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 26/69 (37%), Positives = 42/69 (60%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E ++D+ +D+F +FG +Q+ I +D S RGFGF+TF E V D +A+ + E+ G
Sbjct: 250 EASVDDLRDYFGRFGHIQDAYIPKDPKRSGHRGFGFVTF-AENGVADRVARRSH-EICGQ 307
Query: 92 QVEVKKAEP 100
+V + A P
Sbjct: 308 EVAIDSATP 316
Score = 124 (48.7 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 28/103 (27%), Positives = 57/103 (55%)
Query: 20 QKMTGLSLTPVTEPALD-EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD 78
+K+T + + + + +F+ F ++G++ + + +D+++ + RG GFITF + +V+D
Sbjct: 88 KKVTRIFVARIPSSVSESDFRSHFERYGEITDLYMPKDYNSKQHRGIGFITFSSADSVED 147
Query: 79 LLAKGNKLELAGAQVEVKKAEPKKPNLPQ--PSYRRYNNPKPA 119
L+ + +L G V V +A PK+ + P P R + P A
Sbjct: 148 LMEDTH--DLGGTTVAVDRATPKEDDHPPRPPPVARMSRPPVA 188
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 110 (43.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G + +I+ D + + RGFGF+TFD VD ++ + + + G EV+KA
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHT-INGHNAEVRKA 187
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 27 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 82 RPHSIDGRVVEPKRA 96
Score = 44 (20.5 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 127 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 185
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 186 RAEPRDSKNQAPGQPGASQWGS 207
Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 82
Query: 96 KKAEPK--KPNLPQP 108
K P+ +P +P
Sbjct: 83 KPCTPRGMQPERTRP 97
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 186
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 187 RAEPRDSKNQAPGQPGASQWGS 208
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 82
Query: 96 KKAEPK--KPNLPQPSYRRYNNPK 117
K P+ +P +P P+
Sbjct: 83 KPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 135 (52.6 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 32/82 (39%), Positives = 50/82 (60%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E +++F +FG V E ++ D R RGFGFITF+ EQ+VD + + ++ G +VEVK
Sbjct: 128 ELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM-HFHDIMGKKVEVK 186
Query: 97 KAEPK--KPNLP-QPSYRRYNN 115
+AEP+ K P QP ++ +
Sbjct: 187 RAEPRDSKNQAPGQPGASQWGS 208
Score = 110 (43.8 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ + +F Q+G+V + IM+D +T++SRGFGF+ F V +LA L G ++
Sbjct: 24 ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 82
Query: 96 KKAEPK--KPNLPQPSYRRYNNPK 117
K P+ +P +P P+
Sbjct: 83 KPCTPRGMQPERTRPKEGWQKGPR 106
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 108 (43.1 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 15 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAMA-A 69
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 70 RPHSIDGRVVEPKRA 84
Score = 97 (39.2 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G + +I+ D + + RGFGF+TFD VD ++ + + G EV+KA
Sbjct: 117 RDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDDHDPVDKIVLQKYHTK-NGHNAEVRKA 174
Score = 44 (20.5 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 262 GYGNQGGGYGGGYDNYG 278
Score = 38 (18.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 297 PGGSGGSGGYGGRSR 311
Score = 35 (17.4 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 246 SPGYGGGRGGYGGG 259
Score = 35 (17.4 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 247 PGYGGGRGGYGGGGPGYGNQG 267
>MGI|MGI:1924384 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IDA]
[GO:0017091 "AU-rich element binding" evidence=ISO;IDA] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1924384
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 GO:GO:0070935 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 CTD:10949
KO:K12894 OrthoDB:EOG4W6NX4 EMBL:AK019388 EMBL:AC165251
IPI:IPI00109813 RefSeq:NP_084148.1 UniGene:Mm.490274
ProteinModelPortal:Q9CX86 SMR:Q9CX86 STRING:Q9CX86
PhosphoSite:Q9CX86 PaxDb:Q9CX86 PRIDE:Q9CX86
Ensembl:ENSMUST00000007980 GeneID:77134 KEGG:mmu:77134
UCSC:uc007qtf.2 InParanoid:Q9CX86 OMA:EDNQHAL ChiTaRS:HNRNPA0
NextBio:346544 Bgee:Q9CX86 Genevestigator:Q9CX86 Uniprot:Q9CX86
Length = 305
Score = 115 (45.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 40 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 98
+ F QFG V++ +I+ D + + RGFGF+ F + A D + K + ++ G +VEVKKA
Sbjct: 116 EHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQ--GHRVEVKKA 173
Query: 99 EPKK 102
PK+
Sbjct: 174 VPKE 177
Score = 36 (17.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 196 GYSGRYGG 203
GY G YGG
Sbjct: 295 GYGGGYGG 302
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88
K++F +FG+V+E +MRD T RSRGFGF+T+ + VD +LA+ N+ EL
Sbjct: 39 KEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVDQTGVDKVLAQ-NRHEL 87
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 109 (43.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 197 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 256
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 257 GKAVTPPMPLL 267
Score = 45 (20.9 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q+T K+ GL LTP + AL + K + M+
Sbjct: 3 NGQSTAAKL-GLPPLTPEQQEALQKAKKYAME 33
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 109 (43.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 117 RDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 174
Query: 98 A 98
A
Sbjct: 175 A 175
Score = 109 (43.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 15 GLSFQ-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 69
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 70 RPHSIDGRVVEPKRA 84
Score = 44 (20.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 263 GYGNQGGGYGGGYDNYG 279
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 326 PGGSGGSGGYGGRSR 340
Score = 35 (17.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 247 SPGYGGGRGGYGGG 260
Score = 35 (17.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 248 PGYGGGRGGYGGGGPGYGNQG 268
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 109 (43.4 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 15 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 69
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 70 RPHSIDGRVVEPKRA 84
Score = 108 (43.1 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 117 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 174
Query: 98 A 98
A
Sbjct: 175 A 175
Score = 44 (20.5 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 263 GYGNQGGGYGGGYDNYG 279
Score = 38 (18.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 326 PGGSGGSGGYGGRSR 340
Score = 35 (17.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 247 SPGYGGGRGGYGGG 260
Score = 35 (17.4 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 248 PGYGGGRGGYGGGGPGYGNQG 268
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 115 (45.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 26/85 (30%), Positives = 45/85 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE + ++ F ++G + + I+ D + RSRGF F+ F+ + +
Sbjct: 116 GLSLY-TTE---SDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 171
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 172 NGMELDGRRIRVDFSITKRPHTPTP 196
Score = 34 (17.0 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 217 GYDRGYD 223
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 26 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 80
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 81 RPHSIDGRVVEPKRA 95
Score = 108 (43.1 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 128 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 185
Query: 98 A 98
A
Sbjct: 186 A 186
Score = 44 (20.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 274 GYGNQGGGYGGGYDNYG 290
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 337 PGGSGGSGGYGGRSR 351
Score = 35 (17.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 258 SPGYGGGRGGYGGG 271
Score = 35 (17.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 259 PGYGGGRGGYGGGGPGYGNQG 279
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 27 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 82 RPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
Score = 44 (20.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 27 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 82 RPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
Score = 44 (20.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 27 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 82 RPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
Score = 44 (20.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 27 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 82 RPHSIDGRVVEPKRA 96
Score = 108 (43.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 129 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHTIN--GHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
Score = 44 (20.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 259 SPGYGGGRGGYGGG 272
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 109 (43.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 27 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 81
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 82 RPHSIDGRVVEPKRA 96
Score = 106 (42.4 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G V +I+ D + + RGFGF TFD VD + L K + + G EV+K
Sbjct: 129 RDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
Score = 44 (20.5 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 275 GYGNQGGGYGGGYDNYG 291
Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 338 PGGSGGSGGYGGRSR 352
Score = 35 (17.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQG 280
Score = 34 (17.0 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 196 GYSGRYGGFNRG 207
GY G GG N G
Sbjct: 246 GYGGGLGGGNFG 257
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 115 (45.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + + I+ D + RSRGF F+ F+ + + +
Sbjct: 124 GLSLY-TTERDL---REVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVEDAKEAKERA 179
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTP 204
Score = 34 (17.0 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 225 GYDRGYD 231
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 112 (44.5 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 179
Query: 99 EPKK 102
K+
Sbjct: 180 LSKQ 183
Score = 110 (43.8 bits), Expect = 5.4e-08, Sum P(2) = 5.4e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 27 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 84
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 85 PKRAVSREDSV 95
Score = 39 (18.8 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 196 GYSGR--YGGFNRGYDVTG 212
GYS R YGG GY G
Sbjct: 226 GYSSRGGYGGGGPGYGNQG 244
Score = 35 (17.4 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 248 GGGGGYDGYNEGGNFGG 264
>UNIPROTKB|F1N235 [details] [associations]
symbol:F1N235 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:DAAA02006449 IPI:IPI01002976
Ensembl:ENSBTAT00000014868 OMA:LENGTGR Uniprot:F1N235
Length = 353
Score = 116 (45.9 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 24/70 (34%), Positives = 41/70 (58%)
Query: 30 VTEPALDE-FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88
+TE + +D+F ++G + +I+ D + + RGFGFITFD VD ++ + N +
Sbjct: 119 ITEDMKEHHLRDYFEKYGKINAIEIVTDGQSGKKRGFGFITFDDHDPVDKIVLQKNHT-I 177
Query: 89 AGAQVEVKKA 98
G + EV+KA
Sbjct: 178 NGHRAEVRKA 187
Score = 36 (17.7 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 194 SLGYSGRYGGFNRG 207
S GY GR GG + G
Sbjct: 244 SHGYGGRAGGGSWG 257
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 108 (43.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 125 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 182
Query: 98 A 98
A
Sbjct: 183 A 183
Score = 108 (43.1 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 23 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 77
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 78 RPHTIDGRVVEPKRA 92
Score = 44 (20.5 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
GY + GG+ GYD G
Sbjct: 271 GYGNQGGGYGGGYDNYG 287
Score = 38 (18.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 334 PGGSGGSGGYGGRSR 348
Score = 35 (17.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 194 SLGYSGRYGGFNRG 207
S GY G GG+ G
Sbjct: 255 SPGYGGGRGGYGGG 268
Score = 35 (17.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P G G YGG GY G
Sbjct: 256 PGYGGGRGGYGGGGPGYGNQG 276
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 110 (43.8 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ +++F QFG + E IM + ++ + RGF FITFD AVD ++ + + G EV
Sbjct: 143 EHLREYFGQFGKIDEVNIMTEKNSDKRRGFAFITFDDHDAVDRIVIQKYHT-VNGHNCEV 201
Query: 96 KKA 98
+KA
Sbjct: 202 RKA 204
Score = 105 (42.0 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 52 ESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDARPHKVD--GRAVE 109
Query: 95 VKKA 98
K+A
Sbjct: 110 PKRA 113
Score = 44 (20.5 bits), Expect = 3.7e-08, Sum P(2) = 3.7e-08
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 196 GYSGRYGGFNRGY 208
GY+G YGG N GY
Sbjct: 265 GYNG-YGGGNGGY 276
Score = 36 (17.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 6/8 (75%), Positives = 6/8 (75%)
Query: 196 GYSGRYGG 203
GY G YGG
Sbjct: 243 GYGGGYGG 250
Score = 35 (17.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 196 GYSGRYGGFNRGY 208
GY G GG GY
Sbjct: 390 GYGGGSGGGGGGY 402
Score = 34 (17.0 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 196 GYSGRYGGFNRG 207
GY G GG+ G
Sbjct: 268 GYGGGNGGYGGG 279
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 112 (44.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 4.0e-08, Sum P(2) = 4.0e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 110 (43.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D ++ F ++G+V + +++ D T RSRGFGF+TF + +A + + +L G V+V
Sbjct: 54 DSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKV 113
Query: 96 KKAEPK 101
A +
Sbjct: 114 NYANDR 119
Score = 39 (18.8 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G SG YGG GY +G
Sbjct: 138 GGSGGYGGGAGGYGGSG 154
Score = 36 (17.7 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 196 GYSGRYGGFNRGY 208
G SG YGG GY
Sbjct: 151 GGSGGYGGGAGGY 163
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 199 GRYGGFNRGYDVTG 212
G YGG GY +G
Sbjct: 128 GGYGGGGGGYGGSG 141
Score = 34 (17.0 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 193 SSLGYSGRYGGFNRGYDVTG 212
S +G S ++GG N + G
Sbjct: 256 SPVGNSSQFGGDNTQFTAGG 275
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 109 (43.4 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 203 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 262
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 263 GKAVTPPMPLL 273
Score = 47 (21.6 bits), Expect = 4.6e-08, Sum P(2) = 4.6e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 6 TEILTMFINRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
TE + M N Q+T K+ GL LTP + AL + K + M+
Sbjct: 2 TESIKME-NGQSTAAKL-GLPPLTPEQQEALQKAKKYAME 39
>FB|FBgn0004237 [details] [associations]
symbol:Hrb87F "Heterogeneous nuclear ribonucleoprotein at
87F" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005703
"polytene chromosome puff" evidence=IDA] [GO:0005654 "nucleoplasm"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0000785 "chromatin" evidence=IDA] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0007067 "mitosis" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005737 GO:GO:0007067 GO:GO:0022008 GO:GO:0000166
GO:GO:0043565 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000785
GO:GO:0030529 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 KO:K12741 EMBL:X54803 EMBL:X58183
EMBL:X58184 EMBL:X59691 EMBL:X62636 EMBL:BT012315 PIR:A41732
PIR:S22315 RefSeq:NP_001163602.1 RefSeq:NP_476806.1
RefSeq:NP_476807.1 UniGene:Dm.1711 ProteinModelPortal:P48810
SMR:P48810 IntAct:P48810 MINT:MINT-296059 STRING:P48810
PaxDb:P48810 EnsemblMetazoa:FBtr0082851 EnsemblMetazoa:FBtr0300590
EnsemblMetazoa:FBtr0310621 GeneID:48535 KEGG:dme:Dmel_CG12749
CTD:48535 FlyBase:FBgn0004237 InParanoid:P48810 OMA:MENRDAK
OrthoDB:EOG46WWRF PhylomeDB:P48810 ChiTaRS:Hrb87F GenomeRNAi:48535
NextBio:839451 Bgee:P48810 GermOnline:CG12749 GO:GO:0035062
Uniprot:P48810
Length = 385
Score = 114 (45.2 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 25/68 (36%), Positives = 42/68 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D K F ++G++ + +M+D T RSRGFGFIT+ +D+ A+ +K++ G VE
Sbjct: 38 DGLKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKID--GRTVE 95
Query: 95 VKKAEPKK 102
K+A P++
Sbjct: 96 PKRAVPRQ 103
Score = 38 (18.4 bits), Expect = 4.7e-08, Sum P(2) = 4.7e-08
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 192 PSSLGYSGRYGGFNRG 207
P+ G GGFN+G
Sbjct: 339 PAPYSQGGGGGGFNKG 354
Score = 35 (17.4 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 196 GYSGRYGGFNRGY 208
G G GG NR Y
Sbjct: 373 GQGGNMGGGNRRY 385
>UNIPROTKB|E9PSU5 [details] [associations]
symbol:E9PSU5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00364363 PRIDE:E9PSU5
Ensembl:ENSRNOT00000022054 Uniprot:E9PSU5
Length = 363
Score = 112 (44.5 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 127 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 185
Query: 99 EPKK 102
K+
Sbjct: 186 LSKQ 189
Score = 104 (41.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/85 (30%), Positives = 47/85 (55%)
Query: 24 GLSLTPVTEPALDEF---KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 80
GLS + + F +D ++G + + +MRD T RSRGFGF+T+ E+ +
Sbjct: 19 GLSFETTDDSLREHFEGWRDGSEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMC 78
Query: 81 AKGNKLELAGAQVEVKKAEPKKPNL 105
A+ +K++ G VE K+A ++ ++
Sbjct: 79 ARPHKVD--GRVVEPKRAVSREDSV 101
Score = 39 (18.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 196 GYSGR--YGGFNRGYDVTG 212
GYS R YGG GY G
Sbjct: 266 GYSSRGGYGGGGPGYGNQG 284
Score = 38 (18.4 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G YGG + GY+ G
Sbjct: 239 GSRGSYGGGDGGYNGFG 255
Score = 36 (17.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G +G Y G+N G + G
Sbjct: 289 GGAGGYDGYNEGGNFGG 305
Score = 35 (17.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 199 GRYGGFNRGYD 209
G YGG GYD
Sbjct: 285 GGYGGGAGGYD 295
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 113 (44.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + + I+ D + RSRGF F+ F+ + +
Sbjct: 124 GLSLY-TTERDL---REVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTP 204
Score = 34 (17.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 225 GYDRGYD 231
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 113 (44.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + + I+ D + RSRGF F+ F+ + +
Sbjct: 124 GLSLY-TTERDL---REVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTP 204
Score = 34 (17.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 225 GYDRGYD 231
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 113 (44.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + + I+ D + RSRGF F+ F+ + +
Sbjct: 124 GLSLY-TTERDL---REVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTP 204
Score = 34 (17.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 225 GYDRGYD 231
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 113 (44.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + + I+ D + RSRGF F+ F+ + +
Sbjct: 124 GLSLY-TTERDL---REVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTP 204
Score = 34 (17.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 225 GYDRGYD 231
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 113 (44.8 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + + I+ D + RSRGF F+ F+ + +
Sbjct: 124 GLSLY-TTERDL---REVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 179
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 180 NGMELDGRRIRVDFSITKRPHTPTP 204
Score = 34 (17.0 bits), Expect = 5.3e-08, Sum P(2) = 5.3e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 225 GYDRGYD 231
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 112 (44.5 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Query: 99 EPKK 102
K+
Sbjct: 202 LSKQ 205
Score = 110 (43.8 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 107 PKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 196 GYSGR--YGGFNRGYDVTG 212
GYS R YGG GY G
Sbjct: 281 GYSSRGGYGGGGPGYGNQG 299
Score = 38 (18.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G YGG + GY+ G
Sbjct: 254 GSRGSYGGGDGGYNGFG 270
Score = 37 (18.1 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 199 GRYGGFNRGYD 209
G YGG GYD
Sbjct: 300 GGYGGGGGGYD 310
Score = 35 (17.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 304 GGGGGYDGYNEGGNFGG 320
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 112 (44.5 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Query: 99 EPKK 102
K+
Sbjct: 202 LSKQ 205
Score = 110 (43.8 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 107 PKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 196 GYSGR--YGGFNRGYDVTG 212
GYS R YGG GY G
Sbjct: 282 GYSSRGGYGGGGPGYGNQG 300
Score = 38 (18.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 35 (17.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 304 GGGGGYDGYNEGGNFGG 320
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 112 (44.5 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Query: 99 EPKK 102
K+
Sbjct: 202 LSKQ 205
Score = 110 (43.8 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 107 PKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 196 GYSGR--YGGFNRGYDVTG 212
GYS R YGG GY G
Sbjct: 282 GYSSRGGYGGGGPGYGNQG 300
Score = 38 (18.4 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 37 (18.1 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 199 GRYGGFNRGYD 209
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
Score = 35 (17.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 305 GGGGGYDGYNEGGNFGG 321
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 112 (44.5 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Query: 99 EPKK 102
K+
Sbjct: 202 LSKQ 205
Score = 110 (43.8 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 107 PKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 5.7e-08, Sum P(2) = 5.7e-08
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 196 GYSGR--YGGFNRGYDVTG 212
GYS R YGG GY G
Sbjct: 282 GYSSRGGYGGGGPGYGNQG 300
Score = 38 (18.4 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 37 (18.1 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 199 GRYGGFNRGYD 209
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
Score = 35 (17.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 305 GGGGGYDGYNEGGNFGG 321
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 112 (44.5 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Query: 99 EPKK 102
K+
Sbjct: 202 LSKQ 205
Score = 110 (43.8 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 107 PKRAVSREDSV 117
Score = 39 (18.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 9/19 (47%), Positives = 9/19 (47%)
Query: 192 PSSLG-YSGRYGGFNRGYD 209
P G G YGG GYD
Sbjct: 294 PGGYGNQGGGYGGGGGGYD 312
Score = 38 (18.4 bits), Expect = 7.3e-08, Sum P(2) = 7.3e-08
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G YGG + GY+ G
Sbjct: 255 GSRGSYGGGDGGYNGFG 271
Score = 35 (17.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 306 GGGGGYDGYNEGGNFGG 322
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 113 (44.8 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + ++ D T RSRGF F+ F+ + + +
Sbjct: 141 GLSLY-TTERDL---REVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERA 196
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+P+ P P
Sbjct: 197 NGMELDGRRIRVDYSITKRPHTPTP 221
Score = 34 (17.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 258 GYDRGYD 264
Score = 34 (17.0 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 254 GYDRGYD 260
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 112 (44.5 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F1NBB6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00700000104376 EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00818847 Ensembl:ENSGALT00000029498 Uniprot:F1NBB6
Length = 310
Score = 110 (43.8 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 35 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVD--GRVVE 92
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 93 PKRAVSREDSV 103
Score = 108 (43.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 129 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 187
Query: 99 EPKK 102
K+
Sbjct: 188 LSKQ 191
Score = 37 (18.1 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 199 GRYGGFNRGYD 209
G YGG GYD
Sbjct: 231 GGYGGGGGGYD 241
Score = 35 (17.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 235 GGGGGYDGYNEGGNFGG 251
>UNIPROTKB|F1LNG4 [details] [associations]
symbol:Hnrnpa3 "Heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00567786 Ensembl:ENSRNOT00000050735 ArrayExpress:F1LNG4
Uniprot:F1LNG4
Length = 357
Score = 112 (44.5 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 121 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 179
Query: 99 EPKK 102
K+
Sbjct: 180 LSKQ 183
Score = 110 (43.8 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 27 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 84
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 85 PKRAVSREDSV 95
Score = 37 (18.1 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 199 GRYGGFNRGYD 209
G YGG GYD
Sbjct: 279 GGYGGGGGGYD 289
Score = 35 (17.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 283 GGGGGYDGYNEGGNFGG 299
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 109 (43.4 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 26 GLSFE-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 80
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 81 RPHSIDGRVVEPKRA 95
Score = 108 (43.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 22/61 (36%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV+K
Sbjct: 128 RDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHNAEVRK 185
Query: 98 A 98
A
Sbjct: 186 A 186
Score = 38 (18.4 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 192 PSSLGYSGRYGGFNR 206
P G SG YGG +R
Sbjct: 297 PGGSGGSGGYGGRSR 311
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 112 (44.5 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 110 (43.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LCKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 109 (43.4 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 224 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 283
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 284 GKAVTPPMPLL 294
Score = 45 (20.9 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q+T K+ GL LTP + AL + K + M+
Sbjct: 47 NGQSTAAKL-GLPPLTPEQQEALQKAKKYAME 77
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 109 (43.4 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 240 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 299
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 300 GKAVTPPMPLL 310
Score = 45 (20.9 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q+T K+ GL LTP + AL + K + M+
Sbjct: 46 NGQSTAAKL-GLPPLTPEQQEALQKAKKYAME 76
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 109 (43.4 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 241 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 300
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 301 GKAVTPPMPLL 311
Score = 45 (20.9 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q+T K+ GL LTP + AL + K + M+
Sbjct: 47 NGQSTAAKL-GLPPLTPEQQEALQKAKKYAME 77
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 109 (43.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 245 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 304
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 305 GKAVTPPMPLL 315
Score = 45 (20.9 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 6 TEILTMFINRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
TE + M N Q+T K+ GL LTP + AL + K + M+
Sbjct: 44 TESIKME-NGQSTGTKL-GLPPLTPEQQEALQKAKKYAME 81
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 109 (43.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 245 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 304
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 305 GKAVTPPMPLL 315
Score = 45 (20.9 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 6 TEILTMFINRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
TE + M N Q+T K+ GL LTP + AL + K + M+
Sbjct: 44 TESIKME-NGQSTGTKL-GLPPLTPEQQEALQKAKKYAME 81
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 112 (44.5 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 35 (17.4 bits), Expect = 9.2e-08, Sum P(2) = 9.2e-08
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|F1LZZ2 [details] [associations]
symbol:F1LZZ2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 IPI:IPI00556964
Ensembl:ENSRNOT00000044311 OMA:KERREDT Uniprot:F1LZZ2
Length = 294
Score = 111 (44.1 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ K + + G EVK+
Sbjct: 145 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDNHDTVDKVVQKYHTVN--GHNCEVKEQ 202
Query: 99 E 99
E
Sbjct: 203 E 203
Score = 34 (17.0 bits), Expect = 9.7e-08, Sum P(2) = 9.7e-08
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G YGG + G++ G
Sbjct: 239 GSRGSYGGGDGGFNGFG 255
>UNIPROTKB|H0YCP8 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC105219 EMBL:AC105049 HGNC:HGNC:17042 Ensembl:ENST00000532884
Uniprot:H0YCP8
Length = 273
Score = 126 (49.4 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 29/87 (33%), Positives = 47/87 (54%)
Query: 22 MTGLSLTPVTEPAL--DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 79
+TGLS++P L D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D
Sbjct: 94 LTGLSISPPLPQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDA 153
Query: 80 LAKGNKLELAGAQVEVKKA-EPKKPNL 105
++ N +L G + V KA P P L
Sbjct: 154 VSSMNLFDLGGQYLRVGKAVTPPMPLL 180
>RGD|2321074 [details] [associations]
symbol:LOC100360986 "mCG1035404-like" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:2321074 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 IPI:IPI00559028
PRIDE:D4ACQ0 Ensembl:ENSRNOT00000002122 UCSC:RGD:2321074
ArrayExpress:D4ACQ0 Uniprot:D4ACQ0
Length = 320
Score = 112 (44.5 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 143 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 201
Query: 99 EPKK 102
K+
Sbjct: 202 LSKQ 205
Score = 110 (43.8 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 107 PKRAVSREDSV 117
Score = 34 (17.0 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 196 GYSGRYGGFNRG 207
G G YGG N G
Sbjct: 255 GSRGSYGGGNYG 266
>FB|FBgn0004903 [details] [associations]
symbol:Rb97D "Ribonuclear protein at 97D" species:7227
"Drosophila melanogaster" [GO:0007286 "spermatid development"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007283 "spermatogenesis" evidence=NAS] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0007275
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
eggNOG:COG0724 GeneTree:ENSGT00700000104255 EMBL:L02106
EMBL:BT001320 PIR:S33679 PIR:S33680 RefSeq:NP_001014671.1
RefSeq:NP_001014672.1 RefSeq:NP_001014673.1 RefSeq:NP_001014674.1
RefSeq:NP_001014675.1 RefSeq:NP_001014676.1 RefSeq:NP_001014677.1
RefSeq:NP_524520.1 RefSeq:NP_733172.1 UniGene:Dm.22918
ProteinModelPortal:Q02926 SMR:Q02926 DIP:DIP-18137N IntAct:Q02926
MINT:MINT-957540 STRING:Q02926 PaxDb:Q02926 PRIDE:Q02926
EnsemblMetazoa:FBtr0085093 EnsemblMetazoa:FBtr0100337
EnsemblMetazoa:FBtr0100339 EnsemblMetazoa:FBtr0100340 GeneID:43231
KEGG:dme:Dmel_CG6354 CTD:43231 FlyBase:FBgn0004903
InParanoid:Q02926 OMA:DICELEH OrthoDB:EOG43N5VC PhylomeDB:Q02926
ChiTaRS:Rb97D GenomeRNAi:43231 NextBio:832835 Bgee:Q02926
GermOnline:CG6354 Uniprot:Q02926
Length = 471
Score = 116 (45.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 31/76 (40%), Positives = 43/76 (56%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L P T + K F+ Q+G V + +MRD +T RSRGFGFIT+ VD A+ N+
Sbjct: 39 LAPYTTE--ENLKLFYGQWGKVVDVVVMRDAATKRSRGFGFITYTKSLMVDR--AQENRP 94
Query: 87 ELA-GAQVEVKKAEPK 101
+ G VE K+A P+
Sbjct: 95 HIIDGKTVEAKRALPR 110
Score = 107 (42.7 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F+QFG+V +++ D +T + RGF F+ FD AVD + K + + V+VKK+
Sbjct: 140 REYFLQFGNVVSVKLLTDKTTGKRRGFAFVEFDDYDAVDKAILK-KQHAIKYVHVDVKKS 198
Score = 35 (17.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 100 PKKPNLPQPSYRRYNNPKPA 119
P + P P++ + P PA
Sbjct: 263 PAPMSAPPPNFNYWGPPPPA 282
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 36 (17.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 193 SSLGYSGRYGGFNRG 207
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 193 SSLGYSGRYGGFNRGY 208
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
Score = 35 (17.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 36 (17.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 193 SSLGYSGRYGGFNRG 207
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 193 SSLGYSGRYGGFNRGY 208
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
Score = 35 (17.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 112 (44.5 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 180
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 181 LSKQEMASASSSQR 194
Score = 36 (17.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 193 SSLGYSGRYGGFNRG 207
S G SG Y +N G
Sbjct: 279 SGYGGSGSYDSYNNG 293
Score = 36 (17.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 193 SSLGYSGRYGGFNRGY 208
+ G G YGG GY
Sbjct: 245 NGFGNDGGYGGGGPGY 260
Score = 35 (17.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 235 GGYGGSGDGYNGFGN 249
>UNIPROTKB|E2RJS4 [details] [associations]
symbol:E2RJS4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03011786
Ensembl:ENSCAFT00000024319 Uniprot:E2RJS4
Length = 330
Score = 111 (44.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 138 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 196
Query: 99 EPKK 102
K+
Sbjct: 197 LSKQ 200
Score = 35 (17.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 8/15 (53%), Positives = 9/15 (60%)
Query: 196 GYSGRYGGFNR-GYD 209
GY G G+NR G D
Sbjct: 252 GYGGSGDGYNRFGND 266
Score = 35 (17.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 251 GGYGGSGDGYNRFGN 265
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 126 (49.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 33/78 (42%), Positives = 41/78 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS VTE L+ D ++G + E QIM T R RGFGFITF + DD +
Sbjct: 18 GLSWD-VTERQLESTFD---RYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKHM 73
Query: 84 NKLELAGAQVEVKKAEPK 101
+ EL + V KAEPK
Sbjct: 74 HGRELGNKVISVNKAEPK 91
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 112 (44.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 49 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 106
Query: 95 VKKA 98
K+A
Sbjct: 107 PKRA 110
Score = 112 (44.5 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 143 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 201
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 202 LSKQEMASASSSQR 215
Score = 36 (17.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 193 SSLGYSGRYGGFNRG 207
S G SG Y +N G
Sbjct: 300 SGYGGSGSYDSYNNG 314
Score = 36 (17.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 193 SSLGYSGRYGGFNRGY 208
+ G G YGG GY
Sbjct: 266 NGFGNDGGYGGGGPGY 281
Score = 35 (17.4 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 256 GGYGGSGDGYNGFGN 270
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 107 (42.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 27 LTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85
L+P +TE ++ +++F +G+++ ++ D T+ RGF F+TF E+ V LL +
Sbjct: 122 LSPDITE---EQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLL-ENRY 177
Query: 86 LELAGAQVEVKKAEPKK 102
++ + E+K A+PK+
Sbjct: 178 HQIGSGKCEIKVAQPKE 194
Score = 102 (41.0 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 24/70 (34%), Positives = 39/70 (55%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ D+ +FG+V + I D T RSRGFGF+ F ++VD +L + +L G ++ K
Sbjct: 45 DLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL-TEHKLDGKLIDPK 103
Query: 97 KAEPKKPNLP 106
+A+ K P
Sbjct: 104 RAKAIKGKEP 113
Score = 43 (20.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 196 GYSGRYGGFNRGYD 209
G GR GFN+GY+
Sbjct: 215 GRGGRGQGFNQGYN 228
Score = 36 (17.7 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 196 GYSGRYGGFNRGYD 209
GY+ + G+ +GYD
Sbjct: 257 GYNYQNYGYGQGYD 270
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 109 (43.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ K+ G VE
Sbjct: 28 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPQKVN--GRVVE 85
Query: 95 VKKA 98
K+A
Sbjct: 86 PKRA 89
Score = 99 (39.9 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 30 VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 80
+ E +D+F Q+G + +IM D + RGF F+TFD +VD ++
Sbjct: 112 IKEDTEHHLRDYFEQYGKTEVIEIMTDRGRGKKRGFAFVTFDDHDSVDKIV 162
Score = 36 (17.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 193 SSLGYSGRYGGFNRG 207
S G SG Y +N G
Sbjct: 219 SGYGGSGSYDSYNNG 233
Score = 34 (17.0 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 194 SLGYSGR---YGGFNRGYDVTG 212
+ GYSG YG +GY G
Sbjct: 197 NFGYSGGSRGYGSGGQGYGNQG 218
>UNIPROTKB|D4ABW2 [details] [associations]
symbol:D4ABW2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00781059 ProteinModelPortal:D4ABW2
Ensembl:ENSRNOT00000044642 Uniprot:D4ABW2
Length = 279
Score = 125 (49.1 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AK 82
GLS E F Q+G + +H +MRD +T RSRGFGF+T+ T + VD + A+
Sbjct: 20 GLSFEATLESL--SLTSHFEQWGTLTDHVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 77
Query: 83 GNKLELAGAQVEVKKAEPKKPNLP 106
+K+ G VE K+A K P
Sbjct: 78 PHKV--GGRAVEPKRAGSKDSQRP 99
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D ++ F ++G ++E +++D T+RSRGFGF+ F +E D + N E G + V
Sbjct: 16 DVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGAMNNQEFDGRIIRV 75
Query: 96 KKAEPKKPNLPQPSYRR---YNNP 116
KA ++P ++ YN+P
Sbjct: 76 DKAS-ERPAARNGGFQGRGGYNSP 98
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E AL++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQALEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101
F ++G +QE +++D T RSRGFGF+TF+ + D +A N + G Q+ V +A K
Sbjct: 26 FSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQAG-K 84
Query: 102 KPNLPQPSYR 111
N + YR
Sbjct: 85 SSNDRRGGYR 94
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E AL++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQALEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/89 (34%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E AL++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQALEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 110 (43.8 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 47 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSARPHKVD--GRVVE 104
Query: 95 VKKAEPKKPNL 105
K+A ++ ++
Sbjct: 105 PKRAVSREDSV 115
Score = 108 (43.1 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+++F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 141 REYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 199
Query: 99 EPKK 102
K+
Sbjct: 200 LSKQ 203
Score = 37 (18.1 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 199 GRYGGFNRGYD 209
G YGG GYD
Sbjct: 301 GGYGGGGGGYD 311
Score = 35 (17.4 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 196 GYSGRYGGFNRGYDVTG 212
G G Y G+N G + G
Sbjct: 305 GGGGGYDGYNEGGNFGG 321
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 109 (43.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 211 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 270
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 271 GKAVTPPMPLL 281
Score = 42 (19.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q T K+ GL LTP + AL + K + M+
Sbjct: 17 NGQGTAAKL-GLPPLTPEQQEALQKAKKYAME 47
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 109 (43.4 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D+ K F FG ++ + RD +T + +G+GFI ++ Q+ D ++ N +L G + V
Sbjct: 211 DDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 270
Query: 96 KKA-EPKKPNL 105
KA P P L
Sbjct: 271 GKAVTPPMPLL 281
Score = 42 (19.8 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 14 NRQTTTQKMTGLS-LTPVTEPALDEFKDFFMQ 44
N Q T K+ GL LTP + AL + K + M+
Sbjct: 17 NGQGTAAKL-GLPPLTPEQQEALQKAKKYAME 47
>UNIPROTKB|J9PBP6 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03014735
Ensembl:ENSCAFT00000045257 OMA:LAQTRHE Uniprot:J9PBP6
Length = 471
Score = 128 (50.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSR--GFGFITFDTEQAVDDLLAKG-NKLELAGAQVEV 95
+++F QFG+V+E +MRD T RSR GFGF+TF + VD +LA+ ++L+ Q++
Sbjct: 124 REYFGQFGEVKECLVMRDPLTKRSRCRGFGFVTFMDQAGVDKVLAQSRHELDSKTVQIDP 183
Query: 96 KKAEPKK 102
K A P++
Sbjct: 184 KVAFPRR 190
Score = 121 (47.7 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 38/109 (34%), Positives = 58/109 (53%)
Query: 17 TTTQKMT--GLSLTPVTEPALDEFKDFFMQFGDVQ--EHQIMRDHSTSRSRG--FGFITF 70
T T+K+ GLS+ E + K +F QF VQ + +M D +T+R RG FGF+TF
Sbjct: 199 TRTKKIFVGGLSVNTTVE----DVKQYFEQFEKVQVDDAMLMFDKTTNRHRGVGFGFVTF 254
Query: 71 DTEQAVDDLLA-KGNKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
++E V+ + +++ QVE KKA+PK+ P S R + P
Sbjct: 255 ESEDIVEKVCEIHFHEINNKMVQVECKKAQPKEVMSPTGSARGRSRVMP 303
>UNIPROTKB|E2R5N6 [details] [associations]
symbol:E2R5N6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03012109
Ensembl:ENSCAFT00000010232 OMA:EMASASC Uniprot:E2R5N6
Length = 322
Score = 109 (43.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 122 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNWEVRKA 180
Query: 99 EPKK 102
K+
Sbjct: 181 LSKQ 184
Score = 105 (42.0 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q G + + +MRD +T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 28 ESLRSHFKQRGILTDCVVMRDPNTKRSRGFGFVTYTAVEEVDPAMHARPHKVD--GRVVE 85
Query: 95 VKKAEPKK 102
K+ K+
Sbjct: 86 PKRTSSKE 93
Score = 35 (17.4 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 196 GYSGRYGGFNRGYD 209
G G YGG GY+
Sbjct: 232 GGGGGYGGRGDGYN 245
>DICTYBASE|DDB_G0292422 [details] [associations]
symbol:DDB_G0292422 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0292422 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000190 KO:K14411
eggNOG:NOG289504 RefSeq:XP_629598.1 ProteinModelPortal:Q54D98
EnsemblProtists:DDB0233639 GeneID:8628658 KEGG:ddi:DDB_G0292422
InParanoid:Q54D98 OMA:YYEDESS Uniprot:Q54D98
Length = 687
Score = 130 (50.8 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 25/75 (33%), Positives = 46/75 (61%)
Query: 39 KDFFMQFGDVQEHQIMR-DHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
KD+F FG+V+E +++ S+SRGFGF+TF +D+++ + +E G VE+++
Sbjct: 123 KDYFSNFGEVKESIVIKATEKASKSRGFGFVTFVDPSVIDEVILINHSIE--GKNVEIRR 180
Query: 98 AEPKKPNLPQPSYRR 112
A PK+ +P ++
Sbjct: 181 AIPKEEMTEEPKKQK 195
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 102 (41.0 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 30/87 (34%), Positives = 46/87 (52%)
Query: 14 NRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT- 72
N T K+ L+P T+ L K+ F FG + + ++ D + SRGFGF+T+D+
Sbjct: 30 NLSLTPSKIFVGGLSPSTDVEL--LKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSI 87
Query: 73 EQAVDDLLAKGNKLELAGAQVEVKKAE 99
E A + + A NK EL G + V A+
Sbjct: 88 EVANNAMQAMQNK-ELDGRIIGVHPAD 113
Score = 39 (18.8 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 196 GYSGRYGGFNRG 207
GY G GG+ RG
Sbjct: 128 GYGGGRGGYARG 139
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSENRSR-GYR 94
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSENRSR-GYR 94
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSENRSR-GYR 94
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 14 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 71
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 72 KRAKAMKTKEP 82
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 123 (48.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGNKLELAGAQVEV 95
+ KD+F +FG+V + I D +T RSRGFGFI F ++VD +L K ++L+ G ++
Sbjct: 79 DLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDKVLEHKEHRLD--GRLIDP 136
Query: 96 KKAEPKK 102
KKA K
Sbjct: 137 KKAMAMK 143
Score = 118 (46.6 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/71 (33%), Positives = 43/71 (60%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E D+ +++F FG+++ ++ D T++ RGF FITF E V +L K ++G+
Sbjct: 158 EAGEDQIREYFETFGEIEAIELPMDPKTNKRRGFVFITFKEEDPVKKILEKKFH-NVSGS 216
Query: 92 QVEVKKAEPKK 102
+ E+K A+PK+
Sbjct: 217 KCEIKIAQPKE 227
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 118 (46.6 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 33 PALDE--FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
P DE KD F F V E ++M + T RSRG+GF+ F +E + + ++ N EL G
Sbjct: 40 PGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNG 99
Query: 91 AQVEVKKAEPKKPNLP 106
+ V A+ P+LP
Sbjct: 100 FNISVNVAKDW-PSLP 114
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 119 (46.9 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 34/102 (33%), Positives = 59/102 (57%)
Query: 2 KELLTEILTMFINRQTTT---QKMTGLSLTPVTEPALDE-FKDFFMQFGDVQEHQIMRDH 57
K L T+ L +F+N + +++ L + ++ DE + F Q+G + + +MRD
Sbjct: 9 KFLGTQDLCLFLNLALSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP 68
Query: 58 STSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVKKA 98
+T RSRGFGF+T+ T + VD + A+ +K++ G VE K+A
Sbjct: 69 NTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVEPKRA 108
Score = 112 (44.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 141 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 199
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 200 LSKQEMASASSSQR 213
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 24/74 (32%), Positives = 46/74 (62%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ K+ F QFG++++ ++ D T RS+GFGF+ F+++++V + + N E+ G ++ V
Sbjct: 18 EALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINSDN--EINGRKLVV 75
Query: 96 KKAEPK--KPNLPQ 107
+A K K N P+
Sbjct: 76 NEALAKDFKENTPK 89
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 28/83 (33%), Positives = 48/83 (57%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNL 105
K + G Q+ V +P +P++
Sbjct: 68 NGK-SVDGRQIRVD--QPLRPSV 87
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 117 (46.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>ZFIN|ZDB-GENE-030912-14 [details] [associations]
symbol:hnrnpa1 "heterogeneous nuclear
ribonucleoprotein A1" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030912-14 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 eggNOG:COG0724
HSSP:P09651 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 EMBL:BC044442 IPI:IPI00500189
RefSeq:NP_956398.1 UniGene:Dr.67768 ProteinModelPortal:Q803K3
SMR:Q803K3 STRING:Q803K3 PRIDE:Q803K3 GeneID:378453 KEGG:dre:378453
InParanoid:Q803K3 NextBio:20813776 ArrayExpress:Q803K3 Bgee:Q803K3
Uniprot:Q803K3
Length = 422
Score = 124 (48.7 bits), Expect = 4.1e-07, P = 4.1e-07
Identities = 30/86 (34%), Positives = 47/86 (54%)
Query: 17 TTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAV 76
TT +K+ + TE + +D+F QFG ++ +IM DH T RGF F+TFD +V
Sbjct: 121 TTVKKIFVGGIKDDTEE--NHLRDYFDQFGKIEVVEIMVDHKTGNKRGFAFVTFDDHDSV 178
Query: 77 DDLLAKGNKLELAGAQVEVKKAEPKK 102
D ++ + + G EV+KA K+
Sbjct: 179 DRIVIQKYHT-VNGHNCEVRKALSKQ 203
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 117 (46.2 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 16 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 73
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 74 KRAKAMKTKEP 84
Score = 100 (40.3 bits), Expect = 0.00050, P = 0.00050
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 93 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 148
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 149 HNVGLSKCEIKVAMSKE 165
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 121 (47.7 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 27/71 (38%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FGDV + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 110 DLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 167
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 168 KRAKAMKTKEP 178
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 117 (46.2 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 105 (42.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L+ D F ++G + + R+ T+RSRGFGF+TF+ D L
Sbjct: 11 GLSFD-TTEQSLE---DAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 84 NKLELAGAQVEVKKA 98
N + G + V +A
Sbjct: 67 NGKSVDGRTIRVDEA 81
Score = 36 (17.7 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 196 GYSGRYGGFNRGY 208
G G YGG +R Y
Sbjct: 120 GGGGGYGGGDRSY 132
Score = 35 (17.4 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 6/14 (42%), Positives = 7/14 (50%)
Query: 196 GYSGRYGGFNRGYD 209
GY R + GYD
Sbjct: 166 GYGDRSSSYKDGYD 179
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 108 (43.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ T E AL+ F ++G + E +M+D T++SRGF F+TF++ D+
Sbjct: 14 GLN-TETNEKALEAV---FGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
N L G ++V++A KP+ S RR P P
Sbjct: 70 NGKSLDGKAIKVEQAT--KPSFE--SGRRGPPPPP 100
Score = 34 (17.0 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P S G S RY ++ D G
Sbjct: 298 PPSYGGSSRYDDYSSSRDGYG 318
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 108 (43.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 32/95 (33%), Positives = 50/95 (52%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ T E AL+ F ++G + E +M+D T++SRGF F+TF++ D+
Sbjct: 14 GLN-TETNEKALEAV---FGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
N L G ++V++A KP+ S RR P P
Sbjct: 70 NGKSLDGKAIKVEQAT--KPSFE--SGRRGPPPPP 100
Score = 34 (17.0 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 192 PSSLGYSGRYGGFNRGYDVTG 212
P S G S RY ++ D G
Sbjct: 298 PPSYGGSSRYDDYSSSRDGYG 318
>UNIPROTKB|F1M3H8 [details] [associations]
symbol:F1M3H8 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0032496 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 IPI:IPI00777708
ProteinModelPortal:F1M3H8 PRIDE:F1M3H8 Ensembl:ENSRNOT00000061231
Uniprot:F1M3H8
Length = 194
Score = 115 (45.5 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 40 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 98
+ F QFG V++ +I+ D + + RGFGF+ F + A D + K + ++ G +VEVKKA
Sbjct: 116 EHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQ--GHRVEVKKA 173
Query: 99 EPKK 102
PK+
Sbjct: 174 VPKE 177
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 117 (46.2 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 112 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 169
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 170 KRAKAMKTKEP 180
>UNIPROTKB|F1M6S2 [details] [associations]
symbol:F1M6S2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00782238
ProteinModelPortal:F1M6S2 Ensembl:ENSRNOT00000030712 Uniprot:F1M6S2
Length = 223
Score = 117 (46.2 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ K + + G EVKKA
Sbjct: 126 RDYFEKYGKIEIIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVQKYHTIN--GHNYEVKKA 183
Query: 99 EPKK 102
K+
Sbjct: 184 VSKQ 187
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 119 (46.9 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+ F + G V E +++ D + RS+GFGF+T+D+ Q V + + + +L G Q+ V +A
Sbjct: 221 ESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
Query: 99 EPKKP 103
E + P
Sbjct: 281 EARPP 285
>UNIPROTKB|F1SA35 [details] [associations]
symbol:LOC100737421 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:FP326688 RefSeq:XP_003480852.1
Ensembl:ENSSSCT00000014862 GeneID:100737421 KEGG:ssc:100737421
OMA:STFGNIV Uniprot:F1SA35
Length = 349
Score = 107 (42.7 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 32/95 (33%), Positives = 51/95 (53%)
Query: 13 INRQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 72
IN Q + GL + TE +L ++++ Q+G + + ++RD S RSRGFGF+TF +
Sbjct: 16 INEQFHKLFIGGLC-SRTTEKSL---RNYYQQWGKLTDCVVLRDPSNKRSRGFGFVTFSS 71
Query: 73 EQAVDDLLAKGNKLELAGAQVEVKKA----EPKKP 103
VD +A + G V+ K+A E +KP
Sbjct: 72 VAEVDAAMA-ARPHSVDGKVVDPKRAVAREESEKP 105
Score = 103 (41.3 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 22/61 (36%), Positives = 35/61 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + L K + + G EV K
Sbjct: 129 RDYFEKYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTIN--GHHAEVGK 186
Query: 98 A 98
A
Sbjct: 187 A 187
Score = 38 (18.4 bits), Expect = 7.3e-07, Sum P(2) = 7.3e-07
Identities = 6/11 (54%), Positives = 7/11 (63%)
Query: 197 YSGRYGGFNRG 207
Y G Y G+ RG
Sbjct: 227 YKGGYNGYGRG 237
>UNIPROTKB|F1Q2T4 [details] [associations]
symbol:F1Q2T4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03026834
Ensembl:ENSCAFT00000030325 Uniprot:F1Q2T4
Length = 290
Score = 107 (42.7 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + + F Q+G +++ +MRD +T SRGFGF+T+ T + VD A+ +K++ G
Sbjct: 24 ETTNESLRSHFEQWGMLRDCVVMRDPNTKHSRGFGFVTYATVKEVD--AARSHKVD--GR 79
Query: 92 QVEVKKA 98
VE K+A
Sbjct: 80 VVEPKRA 86
Score = 35 (17.4 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 199 GRYGGFNRGYDVTGD 213
G YGG GY+ G+
Sbjct: 230 GGYGGSGDGYNGFGN 244
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 26 SLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85
+L+P T D ++ F +G+V + +MRD T RSRGFGF+T+ + + ++ +
Sbjct: 9 NLSPTTTD--DMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDG 66
Query: 86 LELAGAQVEVK 96
EL G +V VK
Sbjct: 67 KELNGRRVSVK 77
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 118 (46.6 bits), Expect = 8.2e-07, P = 8.2e-07
Identities = 24/72 (33%), Positives = 46/72 (63%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAG 90
E ++ +++F +FG+++ ++ D T++ RGF FITF E+ V +L K K ++G
Sbjct: 158 EATEEKIREYFGEFGEIEAIELPMDPKTNKRRGFVFITFKEEEPVKKVLEK--KFHTISG 215
Query: 91 AQVEVKKAEPKK 102
++ E+K A+PK+
Sbjct: 216 SKCEIKVAQPKE 227
Score = 102 (41.0 bits), Expect = 0.00043, P = 0.00043
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + I +T RS+GFGFI F +V+ +L K ++L+ G ++
Sbjct: 79 DLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASVEKVLDQKEHRLD--GRVIDP 136
Query: 96 KKAEPKK 102
KKA K
Sbjct: 137 KKAMAMK 143
>DICTYBASE|DDB_G0278349 [details] [associations]
symbol:tra2 "putative transformer-2 protein"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0278349 GO:GO:0005634 GO:GO:0045335 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0000398 HSSP:P62995 KO:K12897 eggNOG:NOG297815
RefSeq:XP_642304.1 ProteinModelPortal:Q54Y98 PRIDE:Q54Y98
EnsemblProtists:DDB0233352 GeneID:8621510 KEGG:ddi:DDB_G0278349
OMA:GIHPRLT Uniprot:Q54Y98
Length = 326
Score = 119 (46.9 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 30/93 (32%), Positives = 48/93 (51%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN-- 84
L P TE + KD F +FG + ++ D T RS+ FGF+ F+ ++ D + AK
Sbjct: 120 LAPQTEER--DLKDEFSRFGKIDHVDLIMDRKTGRSKCFGFVYFENKE--DAVRAKEECQ 175
Query: 85 KLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPK 117
L+L G + + KKP+ P P + + NP+
Sbjct: 176 DLQLHGKSIRTDFSATKKPHEPTPG-KYFGNPR 207
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 120 (47.3 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 34/95 (35%), Positives = 51/95 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ T E AL+ F ++G V E +M+D T++SRGF F+TF++ D +
Sbjct: 14 GLN-TETNEKALEAV---FCKYGRVVEVLLMKDRETNKSRGFAFVTFESPADAKDAAREL 69
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQPSYRRYNNPKP 118
N L G ++V++A KP+ PS RR P P
Sbjct: 70 NGKALDGKPIKVEQAT--KPSFSAPS-RRGPPPPP 101
>UNIPROTKB|H7BXF3 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10781 ChiTaRS:TRA2B EMBL:AC009247
ProteinModelPortal:H7BXF3 PRIDE:H7BXF3 Ensembl:ENST00000259043
Uniprot:H7BXF3
Length = 127
Score = 92 (37.4 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 48 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNLPQ 107
+ + I+ D + RSRGF F+ F+ + + N +EL G ++ V + K+P+ P
Sbjct: 3 IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPT 62
Query: 108 P 108
P
Sbjct: 63 P 63
Score = 34 (17.0 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 84 GYDRGYD 90
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 73 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 131
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 132 LSKQEMASASSSQR 145
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 22/64 (34%), Positives = 38/64 (59%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAKGNKLELAGAQVE 94
+ + F ++G + E +++D T RSRGFGF+TF+ + A D ++A K + G Q+
Sbjct: 19 ESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKA-VDGRQIR 77
Query: 95 VKKA 98
V +A
Sbjct: 78 VDQA 81
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
++ +D F FG + + +++ D + RS+GFGF+T+ T + + A+ N L G + V
Sbjct: 48 EKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFV 107
Query: 96 KKAEPKKPNLP 106
A P++P P
Sbjct: 108 DPARPREPRRP 118
>RGD|1563684 [details] [associations]
symbol:Hnrnpa0 "heterogeneous nuclear ribonucleoprotein A0"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0006954 "inflammatory response" evidence=ISO]
[GO:0017091 "AU-rich element binding" evidence=ISO] [GO:0019901
"protein kinase binding" evidence=ISO] [GO:0032496 "response to
lipopolysaccharide" evidence=ISO] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
REFSEQ:XM_003752953 Ncbi:XP_003753001
Length = 226
Score = 115 (45.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 40 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 98
+ F QFG V++ +I+ D + + RGFGF+ F + A D + K + ++ G +VEVKKA
Sbjct: 35 EHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQ--GHRVEVKKA 92
Query: 99 EPKK 102
PK+
Sbjct: 93 VPKE 96
>UNIPROTKB|F1LVU1 [details] [associations]
symbol:F1LVU1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00950080
Ensembl:ENSRNOT00000064004 Uniprot:F1LVU1
Length = 188
Score = 112 (44.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ N + G EV+KA
Sbjct: 108 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVV--NYHTINGHNCEVRKA 165
Query: 99 EPKK 102
K+
Sbjct: 166 LSKQ 169
>GENEDB_PFALCIPARUM|MAL13P1.120 [details] [associations]
symbol:MAL13P1.120 "splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL L P++ E K F FGD+ + +I RD T +S+GFGFI F + L
Sbjct: 592 GL-LGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVM 650
Query: 84 NKLELAGAQVEVKKAEPKK 102
N +E+AG +++V A+ K
Sbjct: 651 NGMEVAGREIKVGYAQDSK 669
>UNIPROTKB|Q8IE99 [details] [associations]
symbol:MAL13P1.120 "Splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 EMBL:AL844509 HSSP:Q60900 TIGRFAMs:TIGR01622
KO:K13091 OMA:VDINIDE RefSeq:XP_001349956.1
ProteinModelPortal:Q8IE99 IntAct:Q8IE99 MINT:MINT-1582995
EnsemblProtists:MAL13P1.120:mRNA GeneID:813670 KEGG:pfa:MAL13P1.120
EuPathDB:PlasmoDB:PF3D7_1321700 ProtClustDB:CLSZ2848098
Uniprot:Q8IE99
Length = 864
Score = 124 (48.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL L P++ E K F FGD+ + +I RD T +S+GFGFI F + L
Sbjct: 592 GL-LGPLSNITEQELKQLFNPFGDILDVEIHRDPYTGKSKGFGFIQFHKASEAIEALTVM 650
Query: 84 NKLELAGAQVEVKKAEPKK 102
N +E+AG +++V A+ K
Sbjct: 651 NGMEVAGREIKVGYAQDSK 669
>UNIPROTKB|F1SA31 [details] [associations]
symbol:F1SA31 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:CU856608
Ensembl:ENSSSCT00000014866 Uniprot:F1SA31
Length = 332
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 18 TTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD 77
T +K+ LT TE +D+F ++ + +I+ D +S+ RGFGF+TFD VD
Sbjct: 102 TVKKLFIGGLTEDTEE--HHLRDYFEKYEKIDAIEIITDRQSSKIRGFGFVTFDDHDHVD 159
Query: 78 DLLAKGNKLELAGAQVEVKKA 98
LL K + + G EV+KA
Sbjct: 160 KLLQKNHTVN--GHHAEVRKA 178
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 118 (46.6 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/109 (27%), Positives = 53/109 (48%)
Query: 14 NRQTTTQKMTGLSLTPVT-EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 72
N TT K+T + + + E D + +F QFG++ E ++ D +T RS+G+GF+TF
Sbjct: 13 NNNTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKE 72
Query: 73 EQAVDDLLAKGNKLELAGAQVEVKKA-----EPKKPNLPQPSYRRYNNP 116
+A N + + G + A +P+ P P+ R+ +P
Sbjct: 73 AEAAMRACQNMNPV-IDGRRANCNLACLGAQKPRPPTSPRHGTGRFRSP 120
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 117 (46.2 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKAEPKKPNLPQPSYR 111
K + G Q+ V +A N + YR
Sbjct: 68 NGK-SVDGRQIRVDQAGKSSDNRSR-GYR 94
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
+ K F ++G + ++ D T RSRGFGF+TFD +V + N E+ G ++ V
Sbjct: 17 EALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEAEN--EMGGRKLVV 74
Query: 96 KKAEPKKPNLPQ 107
A+ K N Q
Sbjct: 75 SFAQEKTENNQQ 86
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/75 (37%), Positives = 37/75 (49%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GL+ E AL+ D F FG + E +++D T RSRGF FITF + D +
Sbjct: 12 GLNFN-TNEQALE---DHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 84 NKLELAGAQVEVKKA 98
N L G Q+ V A
Sbjct: 68 NGKSLDGRQIRVDHA 82
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 93 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 150
Query: 96 KKAE 99
K+A+
Sbjct: 151 KRAK 154
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 32/90 (35%), Positives = 49/90 (54%)
Query: 40 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAV----D-DLLAKGN----KLELA 89
+FF +FG++ ++ D T RS+G+GF+TF D E A D + +G KL
Sbjct: 31 NFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESATRACKDPNPTIEGRITNCKLAFV 90
Query: 90 GAQVEVKKAEPKKPNLPQ--PSYRRYNNPK 117
GA+V+ +++P NLPQ P Y NP+
Sbjct: 91 GAKVKPNQSQPS--NLPQLLPRYDPQYNPR 118
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 100 (40.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 35 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 90
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 91 HNVGLSKCEIKVAMSKE 107
Score = 48 (22.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 196 GYSGR-YGGFNRGYDVTG 212
GY+ + YGG+ GYD TG
Sbjct: 152 GYNSQGYGGYG-GYDYTG 168
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/71 (36%), Positives = 42/71 (59%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + + D T RSRGFGF+ F ++VD ++ K +KL G ++
Sbjct: 112 DLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLN--GKVIDP 169
Query: 96 KKAEPKKPNLP 106
K+A+ K P
Sbjct: 170 KRAKAMKTKEP 180
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 114 (45.2 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 23/70 (32%), Positives = 43/70 (61%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D ++ F ++G + + +MRD T RSRGFGF+T+ E+ + A+ +K++ G VE
Sbjct: 27 DSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCARPHKVD--GRVVEP 84
Query: 96 KKAEPKKPNL 105
K+A ++ ++
Sbjct: 85 KRAVSREDSV 94
Score = 112 (44.5 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 21/64 (32%), Positives = 37/64 (57%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKKA
Sbjct: 120 RDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKKA 178
Query: 99 EPKK 102
K+
Sbjct: 179 LSKQ 182
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L K ++L+ G ++
Sbjct: 90 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLD--GRVIDP 147
Query: 96 KKAEPKK 102
KKA K
Sbjct: 148 KKAMAMK 154
Score = 110 (43.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAG 90
E ++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K ++G
Sbjct: 169 EATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KFHTVSG 226
Query: 91 AQVEVKKAEPKK 102
++ E+K A+PK+
Sbjct: 227 SKCEIKVAQPKE 238
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L K ++L+ G ++
Sbjct: 90 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLD--GRVIDP 147
Query: 96 KKAEPKK 102
KKA K
Sbjct: 148 KKAMAMK 154
Score = 110 (43.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAG 90
E ++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K ++G
Sbjct: 169 EATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KFHTVSG 226
Query: 91 AQVEVKKAEPKK 102
++ E+K A+PK+
Sbjct: 227 SKCEIKVAQPKE 238
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 122 (48.0 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/66 (34%), Positives = 37/66 (56%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
DEF+ F ++GDV + RD T +SRGFGF+ F + + + + N+ E G + V
Sbjct: 256 DEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYV 315
Query: 96 KKAEPK 101
+A+ K
Sbjct: 316 GRAQKK 321
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L K ++L+ G ++
Sbjct: 103 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLD--GRVIDP 160
Query: 96 KKAEPKK 102
KKA K
Sbjct: 161 KKAMAMK 167
Score = 110 (43.8 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAG 90
E ++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K ++G
Sbjct: 182 EATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KFHTVSG 239
Query: 91 AQVEVKKAEPKK 102
++ E+K A+PK+
Sbjct: 240 SKCEIKVAQPKE 251
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAKGNKLELAGAQVE 94
D + F ++G + E +++D T RSRGFGF+TF+ + A D ++A K + G Q+
Sbjct: 19 DCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGK-SVDGRQIR 77
Query: 95 VKKA 98
V +A
Sbjct: 78 VDQA 81
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 112 (44.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 24 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 81
Query: 95 VKKA 98
K+A
Sbjct: 82 PKRA 85
Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 23/71 (32%), Positives = 39/71 (54%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G + +I+ D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 117 RDYFGQYGKTEVIEIVTDRGSGKKRGFAFVTFDDRDSVDKIVIQKYHT-VNGHNCEVRKA 175
Query: 99 EPKKPNLPQPS 109
P K + S
Sbjct: 176 -PSKQEMASAS 185
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 25/64 (39%), Positives = 41/64 (64%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVE 94
+ + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G VE
Sbjct: 21 ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--GRVVE 78
Query: 95 VKKA 98
K+A
Sbjct: 79 PKRA 82
Score = 112 (44.5 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 24/74 (32%), Positives = 41/74 (55%)
Query: 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+KA
Sbjct: 112 RDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRKA 170
Query: 99 EPKKPNLPQPSYRR 112
K+ S +R
Sbjct: 171 LSKQEMASASSSQR 184
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 104 (41.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + ++ D T RSRGF F+ F+ + + +
Sbjct: 24 GLSLY-TTERDL---REVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+ + P P
Sbjct: 80 NGMELDGRRIRVDYSITKRAHTPTP 104
Score = 34 (17.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 140 GYDRGYD 146
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 104 (41.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLSL TE L ++ F ++G + ++ D T RSRGF F+ F+ + + +
Sbjct: 24 GLSLY-TTERDL---REVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79
Query: 84 NKLELAGAQVEVKKAEPKKPNLPQP 108
N +EL G ++ V + K+ + P P
Sbjct: 80 NGMELDGRRIRVDYSITKRAHTPTP 104
Score = 34 (17.0 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 203 GFNRGYD 209
G++RGYD
Sbjct: 140 GYDRGYD 146
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 116 (45.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L K ++L+ G ++
Sbjct: 89 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLD--GRVIDP 146
Query: 96 KKAEPKK 102
KKA K
Sbjct: 147 KKAMAMK 153
Score = 110 (43.8 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAG 90
E ++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K ++G
Sbjct: 168 EATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KFHTVSG 225
Query: 91 AQVEVKKAEPKK 102
++ E+K A+PK+
Sbjct: 226 SKCEIKVAQPKE 237
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 116 (45.9 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L K ++L+ G ++
Sbjct: 90 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQKEHRLD--GRVIDP 147
Query: 96 KKAEPKK 102
KKA K
Sbjct: 148 KKAMAMK 154
Score = 110 (43.8 bits), Expect = 8.9e-06, P = 8.9e-06
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAG 90
E ++ +++F QFG+++ ++ D ++ RGF FITF E V +L K K ++G
Sbjct: 169 EATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK--KFHTVSG 226
Query: 91 AQVEVKKAEPKK 102
++ E+K A+PK+
Sbjct: 227 SKCEIKVAQPKE 238
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 114 (45.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 29/81 (35%), Positives = 49/81 (60%)
Query: 20 QKMTGLSLTPVTEPALDE-FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD 78
+++ L + +T DE + F Q+G + E +MRD +T RSRGFGF+T+ T + VD
Sbjct: 11 EQLRKLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEEVDA 70
Query: 79 LL-AKGNKLELAGAQVEVKKA 98
+ A+ +K++ G VE ++A
Sbjct: 71 AMNARPHKVD--GRVVEPERA 89
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 114 (45.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAK 82
GLS E +L++ F ++G + E +++D T RSRGFGF+TF+ + A D ++A
Sbjct: 12 GLSFD-TNEQSLEQV---FSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 83 GNKLELAGAQVEVKKA 98
K + G Q+ V +A
Sbjct: 68 NGK-SVDGRQIRVDQA 82
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 114 (45.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEV 95
+ KD+F +FG+V + I D +T RSRGFGFI F +V+ +L K ++L+ G ++
Sbjct: 15 DLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLD--GRVIDP 72
Query: 96 KKAEPKK 102
KKA K
Sbjct: 73 KKAMAMK 79
>UNIPROTKB|F1PVY3 [details] [associations]
symbol:F1PVY3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03016228
Ensembl:ENSCAFT00000027434 Uniprot:F1PVY3
Length = 301
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 24/73 (32%), Positives = 42/73 (57%)
Query: 30 VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89
+ E D +D+F ++G ++ +IM D + + RGF F+TFD +VD ++ K + +
Sbjct: 111 IKENTEDHLRDYF-EYGKIEVIEIMTDRGSGKKRGFTFVTFDDHDSVDKIIQKYHTVN-- 167
Query: 90 GAQVEVKKAEPKK 102
G EV+KA K+
Sbjct: 168 GHNCEVRKALSKQ 180
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 100 (40.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 26/77 (33%), Positives = 46/77 (59%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T P ++ +++F FG+V+ ++ D+ T++ RGF FITF E+ V ++ K K
Sbjct: 36 LSPDT-PE-EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK--KY 91
Query: 87 ELAG-AQVEVKKAEPKK 102
G ++ E+K A K+
Sbjct: 92 HNVGLSKCEIKVAMSKE 108
Score = 46 (21.3 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 196 GY-SGRYGGFNRGYDVTG 212
GY S YGG+ GYD TG
Sbjct: 153 GYNSPGYGGYG-GYDYTG 169
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 40 DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL-LAKGNKLELAGAQVEVKKA 98
+ F QFG V++ +I+ D + + RGFGF+ F A D + K + ++ G +VEVKKA
Sbjct: 116 EHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQ--GHRVEVKKA 173
Query: 99 EPKK 102
PK+
Sbjct: 174 VPKE 177
WARNING: HSPs involving 259 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.135 0.395 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 279 148 0.00068 104 3 11 22 0.37 32
30 0.39 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 509
No. of states in DFA: 517 (55 KB)
Total size of DFA: 123 KB (2081 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.33u 0.11s 14.44t Elapsed: 00:00:01
Total cpu time: 14.35u 0.12s 14.47t Elapsed: 00:00:01
Start: Fri May 10 12:06:23 2013 End: Fri May 10 12:06:24 2013
WARNINGS ISSUED: 2