BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023632
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 3/74 (4%)
Query: 33 PAL--DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
P L +EF+ +F +G V + IM D +T+R RGFGF++FD+E AVD +L K +L+G
Sbjct: 119 PTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFH-DLSG 177
Query: 91 AQVEVKKAEPKKPN 104
QVEVK+A PK N
Sbjct: 178 KQVEVKRALPKDAN 191
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E D+ ++ F +G+V + +MRD T R RGFGF+ F +D +L + + ++
Sbjct: 16 ETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRVLQEKHSIDT--R 73
Query: 92 QVEVKKA 98
+V+VK+A
Sbjct: 74 EVDVKRA 80
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 66.2 bits (160), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
Query: 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90
TE + +E K +F QFG++ E ++ D S+ +GF FITFD+EQ V DLL K K ++AG
Sbjct: 145 TEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLL-KTPKQKIAG 203
Query: 91 AQVEVKKAEPKKPN 104
+V+VK+A PK N
Sbjct: 204 KEVDVKRATPKPEN 217
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E E +D F ++G+++ + D T RSRGF FI F +A+D + A +
Sbjct: 66 ETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAADEHI----- 120
Query: 92 QVEVKKAEPKK 102
+ KK +PKK
Sbjct: 121 -INSKKVDPKK 130
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+K
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VKGHNCEVRK 179
Query: 98 AEPKK 102
A PK+
Sbjct: 180 ALPKQ 184
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + ++ G
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NTTPHKVDGR 82
Query: 92 QVEVKKA 98
VE K+A
Sbjct: 83 VVEPKRA 89
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 40/64 (62%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
E + F QFG+V + +I+ D T RSRGFGF+TF E+++ D + + N EL G + V
Sbjct: 21 ELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVN 80
Query: 97 KAEP 100
+A+
Sbjct: 81 EAQS 84
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99
F QFGDV + +I+ D + RSRGFGF+TF E+A+ D + + N EL G + V +A+
Sbjct: 26 FSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQ 83
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 37/59 (62%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100
F QFGD+ + +I+ D T RSRGFGF+TF E+++ D + N EL G + V +A+
Sbjct: 26 FSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQS 84
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100
F FG V + +++ D T RSRGFGF+TF +EQ++ D + N EL G + V +A+
Sbjct: 28 FANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQS 86
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS E L+ F ++G +QE +++D T RSRGFGF+TF+ + D +A
Sbjct: 12 GLSF-DTDEQCLETV---FSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 84 NKLELAGAQVEVKKA 98
N + G Q+ V +A
Sbjct: 68 NGKTVDGRQIRVDQA 82
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99
F Q+GDV + +I+ D T RSRGFGF+TF E+A+ D + N +L G + V +A+
Sbjct: 28 FAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q22037|ROA1_CAEEL Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis
elegans GN=hrp-1 PE=1 SV=1
Length = 346
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D ++F+ QFG++ + +MRD +T RSRGFGF+TF + VD + + + + G V+
Sbjct: 37 DLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQRPHI-IDGKTVDP 95
Query: 96 KKAEPK 101
K+A P+
Sbjct: 96 KRAVPR 101
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D ++F ++G V + +I+ D +T + RGFGF+TFD +VD + + + + + G + +V
Sbjct: 128 DMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQKSHM-VNGHRCDV 186
Query: 96 KK 97
+K
Sbjct: 187 RK 188
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100
F +G+V E +I+ D T RSRGFGF+TF TE+A+ + N EL G + V +A+
Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQS 65
>sp|P21522|ROA1_SCHAM Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog
OS=Schistocerca americana GN=HNRNP PE=2 SV=1
Length = 342
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVK 96
K F Q+G++ + +M+D T RSRGFGFIT+ VDD A+ +K++ G VE K
Sbjct: 33 LKQHFEQWGEIVDVVVMKDPKTKRSRGFGFITYSRAHMVDDAQNARPHKVD--GRVVEPK 90
Query: 97 KAEPK 101
+A P+
Sbjct: 91 RAVPR 95
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D F FGDV + +++ D T RSRGFGF+ F+ E A +++ + EL G + V
Sbjct: 51 LRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110
Query: 98 AEPKKPNLPQ 107
A +P+ P+
Sbjct: 111 AN-DRPSAPR 119
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 29 PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88
TE +L++ F ++G V E +++D + RSRGFGF+TF+ + D + N +
Sbjct: 16 ETTEESLEQV---FSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAMNGKSV 72
Query: 89 AGAQVEVKKA 98
G Q+ V +A
Sbjct: 73 DGRQIRVDQA 82
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+K
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRK 179
Query: 98 AEPKK 102
A K+
Sbjct: 180 ALCKQ 184
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAG 90
E + + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--G 81
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 82 RVVEPKRA 89
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+K
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRK 179
Query: 98 AEPKK 102
A K+
Sbjct: 180 ALSKQ 184
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAG 90
E + + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--G 81
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 82 RVVEPKRA 89
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+K
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRK 179
Query: 98 AEPKK 102
A K+
Sbjct: 180 ALSKQ 184
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAG 90
E + + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--G 81
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 82 RVVEPKRA 89
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+K
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVIQKYHT-VNGHNCEVRK 179
Query: 98 AEPKK 102
A K+
Sbjct: 180 ALSKQ 184
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAG 90
E + + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMNARPHKVD--G 81
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 82 RVVEPKRA 89
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus GN=HNRNPA1
PE=1 SV=2
Length = 320
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+K
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRK 179
Query: 98 AEPKK 102
A K+
Sbjct: 180 ALSKQ 184
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAG 90
E + + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--G 81
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 82 RVVEPKRA 89
>sp|P07909|ROA1_DROME Heterogeneous nuclear ribonucleoprotein A1 OS=Drosophila
melanogaster GN=Hrb98DE PE=2 SV=1
Length = 365
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F FG++ + I+ D T + RGF F+ FD VD ++ + +L G V+VKK
Sbjct: 138 IRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQKQH-QLNGKMVDVKK 196
Query: 98 AEPKK 102
A PK+
Sbjct: 197 ALPKQ 201
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
K F ++G++ + +M+D T RSRGFGFIT+ +D+ K ++ G VE K+
Sbjct: 47 LKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHSSMIDE-AQKSRPHKIDGRVVEPKR 105
Query: 98 AEPKK 102
A P++
Sbjct: 106 AVPRQ 110
>sp|P51968|RO31_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 373
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-DLLAKGNKLELAG 90
E D ++ F Q+G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G
Sbjct: 37 ETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVD--G 94
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 95 RVVEPKRA 102
Score = 31.2 bits (69), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 44/115 (38%), Gaps = 36/115 (31%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+ +G ++ ++M D + + RGF F+TFD VD ++ + + G EVKK
Sbjct: 134 LRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKK 192
Query: 98 AEPKKPNLPQPSYRRYNNPKPAYGSGFGDAYGGYGGGGFAGGGFGGSGGGGGGGG 152
A K+ + S +R G GGGG
Sbjct: 193 ALSKQ-EMQTASAQR----------------------------------GRGGGG 212
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 40/63 (63%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101
F ++GDV + +I+ D T RSRGFGF+TF +++A+ + N +L G + V +A+ +
Sbjct: 26 FSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85
Query: 102 KPN 104
+ +
Sbjct: 86 RSD 88
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F Q+G ++ +IM D + + RGF F+TFD +VD ++ + + G EV+K
Sbjct: 121 LRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHT-VNGHNCEVRK 179
Query: 98 AEPKK 102
A K+
Sbjct: 180 ALSKQ 184
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAG 90
E + + F Q+G + + +MRD +T RSRGFGF+T+ T + VD + A+ +K++ G
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVD--G 81
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 82 RVVEPKRA 89
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
++ F +G++ + +++ D T RSRGFGF+TF +E ++ D + N EL G + V +
Sbjct: 24 LENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQ 83
Query: 98 AEP 100
A+
Sbjct: 84 AQS 86
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99
F QFG++ + +I+ D T RSRGFGF+TF E+++ D + N +L G + V +A+
Sbjct: 28 FSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|P51992|RO32_XENLA Heterogeneous nuclear ribonucleoprotein A3 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 385
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-DLLAKGNKLELAG 90
E D ++ F Q+G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G
Sbjct: 37 ETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDASMSARPHKVD--G 94
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 95 RVVEPKRA 102
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGNKLELAGAQVEVK 96
+D+F +G ++ ++M D + + RGF F+TFD VD ++ K + + L EVK
Sbjct: 134 LRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHTINLHNC--EVK 191
Query: 97 KAEPKK 102
KA K+
Sbjct: 192 KALSKQ 197
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99
F Q+G+V + +I+ D T RSRGFGF+TF E+++ D + N +L G + V +A+
Sbjct: 28 FSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQ 85
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T + ++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 143 LSPDT--SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 199
Query: 87 ELAGAQVEVKKAEPKK 102
++ + E+K A+PK+
Sbjct: 200 QIGSGKCEIKVAQPKE 215
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGNKLELAGAQVEV 95
+ ++ +FG+V + I D T RSRGFGF+ F +VD +L K +KL+ G ++
Sbjct: 66 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLD--GKLIDP 123
Query: 96 KKAE 99
K+A+
Sbjct: 124 KRAK 127
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95
D ++ F ++G+V + +++ D T RSRGFGF+TF + +A + + +L G V+V
Sbjct: 54 DSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKV 113
Query: 96 KKAEPK 101
A +
Sbjct: 114 NYANDR 119
>sp|Q6URK4|ROA3_RAT Heterogeneous nuclear ribonucleoprotein A3 OS=Rattus norvegicus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKK
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKK 200
Query: 98 A 98
A
Sbjct: 201 A 201
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-DLLAKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKA 98
K+A
Sbjct: 107 PKRA 110
>sp|Q8BG05|ROA3_MOUSE Heterogeneous nuclear ribonucleoprotein A3 OS=Mus musculus
GN=Hnrnpa3 PE=1 SV=1
Length = 379
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKK
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKK 200
Query: 98 A 98
A
Sbjct: 201 A 201
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-DLLAKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKA 98
K+A
Sbjct: 107 PKRA 110
>sp|P51991|ROA3_HUMAN Heterogeneous nuclear ribonucleoprotein A3 OS=Homo sapiens
GN=HNRNPA3 PE=1 SV=2
Length = 378
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G ++ ++M D + + RGF F+TFD VD ++ + + G EVKK
Sbjct: 142 LRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIVVQKYHT-INGHNCEVKK 200
Query: 98 A 98
A
Sbjct: 201 A 201
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-DLLAKGNKLELAGAQVE 94
D ++ F ++G + + +MRD T RSRGFGF+T+ + VD + A+ +K++ G VE
Sbjct: 49 DSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMCARPHKVD--GRVVE 106
Query: 95 VKKA 98
K+A
Sbjct: 107 PKRA 110
>sp|Q5RBU8|ROA2_PONAB Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Pongo abelii
GN=HNRNPA2B1 PE=2 SV=1
Length = 353
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD ++ + + + G EV+K
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKHHT-INGHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A + G
Sbjct: 31 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGR 89
Query: 92 QVEVKKA 98
VE K+A
Sbjct: 90 VVEPKRA 96
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E D + F ++G + E +++D T RSRGFGF+TF+ D + N + G
Sbjct: 15 ETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGR 74
Query: 92 QVEVKKA 98
Q+ V +A
Sbjct: 75 QIRVDQA 81
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T + ++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 240 LSPDT--SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 296
Query: 87 ELAGAQVEVKKAEPKK 102
++ + E+K A+PK+
Sbjct: 297 QIGSGKCEIKVAQPKE 312
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGNKLELAGAQVEV 95
+ ++ +FG+V + I D T RSRGFGF+ F +VD +L K +KL+ G ++
Sbjct: 163 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLD--GKLIDP 220
Query: 96 KKAE 99
K+A+
Sbjct: 221 KRAK 224
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 3/76 (3%)
Query: 27 LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86
L+P T + ++ K++F FG+++ ++ D T+ RGF FIT+ E+ V LL +
Sbjct: 121 LSPDT--SEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLL-ESRYH 177
Query: 87 ELAGAQVEVKKAEPKK 102
++ + E+K A+PK+
Sbjct: 178 QIGSGKCEIKVAQPKE 193
Score = 39.7 bits (91), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96
+ ++ +FG+V + I D T RSRGFGF+ F +VD + LEL +++ K
Sbjct: 44 DLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKV------LELKEHKLDGK 97
Query: 97 KAEPKK 102
+PK+
Sbjct: 98 LIDPKR 103
>sp|Q9TTV2|ROA2_SAGOE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Saguinus
oedipus GN=HNRNPA2B1 PE=1 SV=1
Length = 341
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 15 GLSFQ-TTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 69
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 70 RPHSIDGRVVEPKRA 84
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD ++ + + G EV+K
Sbjct: 116 LRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRK 174
Query: 98 A 98
A
Sbjct: 175 A 175
>sp|Q2HJ60|ROA2_BOVIN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Bos taurus
GN=HNRNPA2B1 PE=2 SV=1
Length = 341
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A
Sbjct: 15 GLSF-ETTEESL---RNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-A 69
Query: 84 NKLELAGAQVEVKKA 98
+ G VE K+A
Sbjct: 70 RPHSIDGRVVEPKRA 84
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD ++ + + G EV+K
Sbjct: 116 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRK 174
Query: 98 A 98
A
Sbjct: 175 A 175
>sp|P51990|RO22_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 2 OS=Xenopus
laevis PE=2 SV=1
Length = 358
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++F+ Q+G + + +MRD ++ RSRGFGF+TF VD ++
Sbjct: 15 GLSF-ETTEESL---RNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMS-A 69
Query: 84 NKLELAGAQVEVKKA----EPKKP 103
+ G VE K+A E KP
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKP 93
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 29 PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88
E +L++ F ++G + E +++D T RSRGFGF+TF+ D + N +
Sbjct: 15 DTNEESLEQV---FSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAV 71
Query: 89 AGAQVEVKKA 98
G Q+ V +A
Sbjct: 72 DGRQIRVDQA 81
>sp|O88569|ROA2_MOUSE Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Mus musculus
GN=Hnrnpa2b1 PE=1 SV=2
Length = 353
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A + G
Sbjct: 31 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGR 89
Query: 92 QVEVKKA 98
VE K+A
Sbjct: 90 VVEPKRA 96
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD ++ + + G EV+K
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
>sp|P22626|ROA2_HUMAN Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Homo sapiens
GN=HNRNPA2B1 PE=1 SV=2
Length = 353
Score = 44.3 bits (103), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A + G
Sbjct: 31 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGR 89
Query: 92 QVEVKKA 98
VE K+A
Sbjct: 90 VVEPKRA 96
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD ++ + + G EV+K
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHT-INGHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
>sp|A7VJC2|ROA2_RAT Heterogeneous nuclear ribonucleoproteins A2/B1 OS=Rattus
norvegicus GN=Hnrnpa2b1 PE=1 SV=1
Length = 353
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91
E + ++++ Q+G + + +MRD ++ RSRGFGF+TF + VD +A + G
Sbjct: 31 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA-ARPHSIDGR 89
Query: 92 QVEVKKA 98
VE K+A
Sbjct: 90 VVEPKRA 96
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+D+F ++G + +I+ D + + RGFGF+TFD VD + + + G EV+K
Sbjct: 128 LRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIFLQKYHT-INGHNAEVRK 186
Query: 98 A 98
A
Sbjct: 187 A 187
>sp|Q13151|ROA0_HUMAN Heterogeneous nuclear ribonucleoprotein A0 OS=Homo sapiens
GN=HNRNPA0 PE=1 SV=1
Length = 305
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD-LLAKGNKLELAGAQVEV 95
+ + F QFG V++ +I+ D + + RGFGF+ F A D + K + ++ G +VEV
Sbjct: 113 DLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFHPIQ--GHRVEV 170
Query: 96 KKAEPKK 102
KKA PK+
Sbjct: 171 KKAVPKE 177
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA------KGNKLELAGAQVEV 95
F FG + + ++ + T RSR FGF+T+ + D +A GN +EL A
Sbjct: 27 FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSRE 86
Query: 96 KKAEP 100
A P
Sbjct: 87 DSARP 91
>sp|Q9CX86|ROA0_MOUSE Heterogeneous nuclear ribonucleoprotein A0 OS=Mus musculus
GN=Hnrnpa0 PE=1 SV=1
Length = 305
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDD-LLAKGNKLELAGAQVEV 95
+ + F QFG V++ +I+ D + + RGFGF+ F + A D + K + ++ G +VEV
Sbjct: 113 DLIEHFSQFGAVEKAEIIADKQSGKKRGFGFVYFQSHDAADKAAVVKFHPIQ--GHRVEV 170
Query: 96 KKAEPKK 102
KKA PK+
Sbjct: 171 KKAVPKE 177
Score = 32.0 bits (71), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA------KGNKLELAGAQVEV 95
F FG + + ++ + T RSR FGF+T+ + D +A GN +EL A
Sbjct: 27 FEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMAASPHAVDGNTVELKRAVSRE 86
Query: 96 KKAEP 100
A P
Sbjct: 87 DSARP 91
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 9/84 (10%)
Query: 24 GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83
GLS TE +L ++++ Q+G + + +MRD ++ RSRGFGF+TF VD +A
Sbjct: 15 GLSF-ETTEESL---RNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNEVDAAMA-T 69
Query: 84 NKLELAGAQVEVKKA----EPKKP 103
+ G VE K+A E KP
Sbjct: 70 RPHTIDGRVVEPKRAVAREESAKP 93
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 14/106 (13%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+++F ++G + +I+ D + + RGF F+TFD VD ++ + + G EV+K
Sbjct: 116 LREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIVLQKYHT-INGHNAEVRK 174
Query: 98 AEPKKPNLPQPSYRRYNNPKPAYG--SGFGDA-----YGGYGGGGF 136
A L + + N + G GFGD+ +G GG F
Sbjct: 175 A------LSKQEMQDVQNTRNNRGGNFGFGDSRGGGNFGSGPGGNF 214
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVD-DLLAKGNKLELAG 90
E + ++ F Q+G + + +MRD ++ RSRGFGF+T+ + VD + A+ +K++ G
Sbjct: 24 ETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVTYLSTDEVDAAMTARPHKVD--G 81
Query: 91 AQVEVKKA 98
VE K+A
Sbjct: 82 RVVEPKRA 89
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82
D +++F Q+G ++ +IM D + + RGF F+TF+ +VD ++ +
Sbjct: 119 DHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIVIQ 165
>sp|P48810|RB87F_DROME Heterogeneous nuclear ribonucleoprotein 87F OS=Drosophila
melanogaster GN=Hrb87F PE=2 SV=2
Length = 385
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGNKLELAGAQVEVK 96
K F ++G++ + +M+D T RSRGFGFIT+ +D+ A+ +K++ G VE K
Sbjct: 40 LKAHFEKWGNIVDVVVMKDPKTKRSRGFGFITYSQSYMIDNAQNARPHKID--GRTVEPK 97
Query: 97 KAEPKK 102
+A P++
Sbjct: 98 RAVPRQ 103
Score = 39.3 bits (90), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97
+++F FG + I+ D T + RGF FI FD VD ++ + + ++VKK
Sbjct: 131 LREYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTH-SIKNKTLDVKK 189
Query: 98 AEPKK 102
A K+
Sbjct: 190 AIAKQ 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.144 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,596,413
Number of Sequences: 539616
Number of extensions: 9894832
Number of successful extensions: 219334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 2231
Number of HSP's successfully gapped in prelim test: 1254
Number of HSP's that attempted gapping in prelim test: 46327
Number of HSP's gapped (non-prelim): 48166
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)