Query 023632
Match_columns 279
No_of_seqs 472 out of 2384
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.9 1.4E-20 3.1E-25 154.3 14.6 85 16-103 31-116 (144)
2 TIGR01659 sex-lethal sex-letha 99.8 8.6E-18 1.9E-22 156.2 13.8 85 17-104 191-278 (346)
3 TIGR01659 sex-lethal sex-letha 99.7 1.1E-17 2.3E-22 155.6 11.3 84 15-101 103-187 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 3.8E-17 8.3E-22 151.8 11.6 81 20-103 270-351 (352)
5 KOG0122 Translation initiation 99.7 3.5E-17 7.5E-22 141.1 9.8 82 17-101 187-269 (270)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 6.8E-17 1.5E-21 150.1 10.4 83 18-103 2-85 (352)
7 KOG0149 Predicted RNA-binding 99.7 1.2E-16 2.5E-21 137.3 8.1 82 15-100 8-90 (247)
8 KOG0125 Ataxin 2-binding prote 99.7 1.2E-16 2.5E-21 142.8 8.4 83 14-101 91-174 (376)
9 KOG4207 Predicted splicing fac 99.7 1.3E-16 2.9E-21 134.5 8.2 86 15-103 9-95 (256)
10 PF00076 RRM_1: RNA recognitio 99.7 2.7E-16 5.9E-21 111.7 8.3 69 22-94 1-70 (70)
11 KOG0107 Alternative splicing f 99.6 1.7E-15 3.7E-20 124.8 8.3 77 17-101 8-85 (195)
12 KOG0113 U1 small nuclear ribon 99.6 3.3E-15 7.2E-20 132.1 10.4 89 17-108 99-188 (335)
13 TIGR01645 half-pint poly-U bin 99.6 4.5E-15 9.8E-20 145.7 11.4 84 18-104 203-287 (612)
14 KOG0121 Nuclear cap-binding pr 99.6 1.7E-15 3.7E-20 118.9 6.2 81 16-99 33-114 (153)
15 PF14259 RRM_6: RNA recognitio 99.6 5.2E-15 1.1E-19 105.8 8.1 69 22-94 1-70 (70)
16 TIGR01648 hnRNP-R-Q heterogene 99.6 3.8E-14 8.2E-19 138.9 16.6 75 18-103 232-309 (578)
17 PLN03120 nucleic acid binding 99.6 1.1E-14 2.4E-19 128.6 11.0 77 18-101 3-80 (260)
18 smart00360 RRM RNA recognition 99.6 1.6E-14 3.4E-19 101.1 8.8 71 23-96 1-71 (71)
19 TIGR01645 half-pint poly-U bin 99.6 1.2E-14 2.6E-19 142.8 10.5 80 17-99 105-185 (612)
20 TIGR01622 SF-CC1 splicing fact 99.5 3.4E-14 7.3E-19 136.7 11.6 80 18-100 185-265 (457)
21 TIGR01628 PABP-1234 polyadenyl 99.5 1.9E-14 4.1E-19 142.1 10.0 85 16-104 282-367 (562)
22 KOG0148 Apoptosis-promoting RN 99.5 9.9E-15 2.2E-19 127.6 7.0 79 21-102 64-143 (321)
23 KOG0111 Cyclophilin-type pepti 99.5 6E-15 1.3E-19 125.6 4.6 84 17-103 8-92 (298)
24 TIGR01642 U2AF_lg U2 snRNP aux 99.5 6.1E-14 1.3E-18 136.6 12.3 82 18-102 294-376 (509)
25 TIGR01648 hnRNP-R-Q heterogene 99.5 3E-14 6.5E-19 139.6 9.8 77 18-98 57-135 (578)
26 smart00362 RRM_2 RNA recogniti 99.5 6.2E-14 1.3E-18 98.5 8.9 71 21-96 1-72 (72)
27 TIGR01628 PABP-1234 polyadenyl 99.5 3.9E-14 8.5E-19 139.9 10.5 77 21-100 2-79 (562)
28 KOG0117 Heterogeneous nuclear 99.5 1.1E-14 2.4E-19 134.7 5.9 79 18-107 258-337 (506)
29 TIGR01622 SF-CC1 splicing fact 99.5 4.6E-14 1E-18 135.7 10.4 83 16-102 86-169 (457)
30 KOG0105 Alternative splicing f 99.5 6.1E-14 1.3E-18 116.6 9.5 78 17-100 4-82 (241)
31 KOG0127 Nucleolar protein fibr 99.5 3.9E-14 8.4E-19 133.9 8.9 83 19-105 117-200 (678)
32 PLN03213 repressor of silencin 99.5 5.1E-14 1.1E-18 131.7 9.1 79 16-101 7-88 (759)
33 KOG0130 RNA-binding protein RB 99.5 4.4E-14 9.5E-19 111.9 7.4 84 17-103 70-154 (170)
34 KOG0144 RNA-binding protein CU 99.5 2.4E-14 5.1E-19 132.1 5.8 88 17-108 122-213 (510)
35 KOG0144 RNA-binding protein CU 99.5 4.5E-14 9.8E-19 130.2 7.3 87 15-104 30-120 (510)
36 COG0724 RNA-binding proteins ( 99.5 1.3E-13 2.8E-18 120.5 9.9 79 19-100 115-194 (306)
37 KOG0145 RNA-binding protein EL 99.5 7.4E-14 1.6E-18 121.6 8.0 83 18-103 40-123 (360)
38 KOG0117 Heterogeneous nuclear 99.5 1.2E-13 2.5E-18 128.0 9.8 80 17-99 81-162 (506)
39 KOG0148 Apoptosis-promoting RN 99.5 1.7E-13 3.7E-18 119.9 9.4 87 10-105 155-242 (321)
40 PLN03121 nucleic acid binding 99.5 2.8E-13 6E-18 118.1 10.5 76 18-100 4-80 (243)
41 KOG0131 Splicing factor 3b, su 99.5 7.1E-14 1.5E-18 115.9 6.2 80 17-99 7-87 (203)
42 cd00590 RRM RRM (RNA recogniti 99.5 5.2E-13 1.1E-17 94.2 9.5 73 21-97 1-74 (74)
43 KOG0126 Predicted RNA-binding 99.4 1.4E-14 3.1E-19 120.0 0.7 80 17-99 33-113 (219)
44 KOG0108 mRNA cleavage and poly 99.4 2.1E-13 4.6E-18 129.3 8.4 82 20-104 19-101 (435)
45 KOG0114 Predicted RNA-binding 99.4 4E-13 8.7E-18 101.9 7.7 80 16-101 15-95 (124)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 7E-13 1.5E-17 128.8 11.2 78 17-102 273-352 (481)
47 smart00361 RRM_1 RNA recogniti 99.4 6.7E-13 1.4E-17 95.5 8.2 61 36-96 3-70 (70)
48 KOG4205 RNA-binding protein mu 99.4 2.4E-13 5.2E-18 123.8 6.9 90 17-110 95-185 (311)
49 PF13893 RRM_5: RNA recognitio 99.4 1.2E-12 2.5E-17 89.9 7.6 56 38-98 1-56 (56)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 1.5E-12 3.3E-17 126.4 10.3 75 19-102 2-79 (481)
51 KOG4212 RNA-binding protein hn 99.4 1.1E-12 2.4E-17 121.4 8.6 78 19-100 44-123 (608)
52 KOG0109 RNA-binding protein LA 99.4 1.1E-12 2.3E-17 116.0 6.6 73 20-103 3-76 (346)
53 KOG0146 RNA-binding protein ET 99.4 9.2E-13 2E-17 115.2 6.1 88 15-105 281-369 (371)
54 KOG0415 Predicted peptidyl pro 99.4 1.2E-12 2.5E-17 118.4 6.6 83 16-101 236-319 (479)
55 KOG0127 Nucleolar protein fibr 99.3 2.2E-12 4.7E-17 122.2 8.4 83 18-103 291-380 (678)
56 KOG4205 RNA-binding protein mu 99.3 2.4E-12 5.2E-17 117.3 5.3 85 18-106 5-90 (311)
57 KOG0145 RNA-binding protein EL 99.3 1.4E-11 3.1E-16 107.5 9.1 79 20-101 279-358 (360)
58 KOG0116 RasGAP SH3 binding pro 99.3 4.4E-11 9.5E-16 113.0 11.7 79 20-102 289-368 (419)
59 KOG0131 Splicing factor 3b, su 99.3 6.9E-12 1.5E-16 104.2 5.5 85 17-104 94-180 (203)
60 KOG0109 RNA-binding protein LA 99.2 1E-11 2.3E-16 109.8 6.4 79 15-104 74-153 (346)
61 KOG0147 Transcriptional coacti 99.2 1.1E-11 2.3E-16 117.7 6.5 80 22-104 281-361 (549)
62 KOG0124 Polypyrimidine tract-b 99.2 9.7E-12 2.1E-16 112.9 4.4 76 19-97 113-189 (544)
63 KOG0123 Polyadenylate-binding 99.2 5.3E-11 1.1E-15 111.6 9.2 81 20-106 77-158 (369)
64 KOG0146 RNA-binding protein ET 99.1 5.4E-11 1.2E-15 104.3 6.0 87 15-105 15-105 (371)
65 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.1E-10 4.5E-15 111.9 9.1 84 17-100 407-501 (509)
66 KOG4661 Hsp27-ERE-TATA-binding 99.1 1.5E-10 3.2E-15 110.3 7.5 81 17-100 403-484 (940)
67 KOG4208 Nucleolar RNA-binding 99.1 2.9E-10 6.2E-15 96.4 8.0 81 18-101 48-130 (214)
68 KOG4211 Splicing factor hnRNP- 99.1 2.6E-10 5.6E-15 107.3 8.4 81 15-102 6-87 (510)
69 KOG4206 Spliceosomal protein s 99.1 3.8E-10 8.3E-15 96.9 8.1 80 19-104 9-93 (221)
70 KOG0533 RRM motif-containing p 99.1 7.5E-10 1.6E-14 97.6 9.2 84 16-103 80-164 (243)
71 KOG4212 RNA-binding protein hn 99.1 3E-10 6.4E-15 105.4 6.8 75 16-98 533-608 (608)
72 KOG0153 Predicted RNA-binding 99.0 5E-10 1.1E-14 101.3 7.7 79 14-101 223-303 (377)
73 KOG0124 Polypyrimidine tract-b 99.0 3.7E-10 7.9E-15 102.8 6.4 86 15-103 206-292 (544)
74 KOG0110 RNA-binding protein (R 99.0 1.9E-10 4.2E-15 112.0 4.5 82 18-102 612-694 (725)
75 KOG0132 RNA polymerase II C-te 99.0 7.1E-10 1.5E-14 109.0 7.6 79 17-104 419-498 (894)
76 KOG0110 RNA-binding protein (R 99.0 1.4E-09 3E-14 106.2 8.4 75 22-99 518-596 (725)
77 KOG4209 Splicing factor RNPS1, 98.9 2.3E-09 5E-14 94.4 7.8 84 14-101 96-180 (231)
78 KOG1995 Conserved Zn-finger pr 98.9 3.6E-09 7.9E-14 96.3 7.8 85 16-103 63-156 (351)
79 KOG1457 RNA binding protein (c 98.9 9.6E-09 2.1E-13 88.2 9.0 86 17-105 32-122 (284)
80 KOG4454 RNA binding protein (R 98.9 1.2E-09 2.7E-14 93.3 3.0 78 16-98 6-84 (267)
81 KOG0123 Polyadenylate-binding 98.8 5.2E-09 1.1E-13 98.3 6.8 86 16-105 267-353 (369)
82 KOG1548 Transcription elongati 98.8 8E-09 1.7E-13 93.6 7.7 81 17-101 132-221 (382)
83 PF04059 RRM_2: RNA recognitio 98.8 4.6E-08 1E-12 74.6 8.6 79 20-101 2-87 (97)
84 KOG0226 RNA-binding proteins [ 98.7 6.9E-09 1.5E-13 90.6 3.5 86 14-102 185-271 (290)
85 KOG4660 Protein Mei2, essentia 98.7 9.3E-09 2E-13 98.2 3.7 72 15-94 71-143 (549)
86 KOG4211 Splicing factor hnRNP- 98.7 3.2E-08 7E-13 93.3 6.9 77 18-99 102-180 (510)
87 KOG0106 Alternative splicing f 98.7 1.3E-08 2.9E-13 88.0 3.9 71 20-101 2-73 (216)
88 KOG0151 Predicted splicing reg 98.5 1.8E-07 4E-12 91.5 6.9 82 16-100 171-256 (877)
89 KOG0106 Alternative splicing f 98.4 1.9E-07 4E-12 80.9 4.3 74 16-100 96-170 (216)
90 KOG1190 Polypyrimidine tract-b 98.4 1.6E-06 3.4E-11 80.5 9.1 78 19-104 297-376 (492)
91 KOG0120 Splicing factor U2AF, 98.3 4.5E-07 9.8E-12 87.2 4.4 84 17-103 287-371 (500)
92 KOG0147 Transcriptional coacti 98.3 1.8E-07 3.8E-12 89.4 1.5 86 15-104 175-261 (549)
93 KOG1855 Predicted RNA-binding 98.3 8.2E-07 1.8E-11 82.7 4.1 70 14-86 226-309 (484)
94 PF11608 Limkain-b1: Limkain b 98.2 4.4E-06 9.6E-11 61.5 6.7 73 20-102 3-78 (90)
95 PF08777 RRM_3: RNA binding mo 98.2 3.6E-06 7.9E-11 65.3 5.3 68 21-97 3-76 (105)
96 KOG4307 RNA binding protein RB 98.1 5.9E-06 1.3E-10 81.1 7.6 78 17-97 865-943 (944)
97 KOG4206 Spliceosomal protein s 98.1 1.2E-05 2.7E-10 69.3 7.4 76 16-99 143-220 (221)
98 PF14605 Nup35_RRM_2: Nup53/35 98.0 1E-05 2.2E-10 54.9 5.1 51 20-80 2-53 (53)
99 COG5175 MOT2 Transcriptional r 98.0 1.1E-05 2.5E-10 73.2 6.1 77 23-99 119-201 (480)
100 KOG2314 Translation initiation 98.0 2.4E-05 5.1E-10 75.4 8.1 79 17-97 56-140 (698)
101 KOG4210 Nuclear localization s 98.0 5.5E-06 1.2E-10 75.3 3.5 81 20-104 186-267 (285)
102 KOG1456 Heterogeneous nuclear 97.9 4.5E-05 9.8E-10 70.3 8.7 74 23-104 127-202 (494)
103 PF05172 Nup35_RRM: Nup53/35/4 97.9 4.3E-05 9.4E-10 58.7 6.5 78 18-100 5-91 (100)
104 KOG4849 mRNA cleavage factor I 97.9 1.3E-05 2.9E-10 73.1 4.2 71 23-96 85-157 (498)
105 KOG1456 Heterogeneous nuclear 97.9 8.6E-05 1.9E-09 68.4 9.4 79 17-102 285-364 (494)
106 KOG1548 Transcription elongati 97.9 3.7E-05 8.1E-10 70.1 7.0 62 36-101 291-352 (382)
107 KOG0105 Alternative splicing f 97.9 0.00013 2.7E-09 61.5 9.4 63 18-90 114-177 (241)
108 KOG0120 Splicing factor U2AF, 97.8 1.8E-05 3.9E-10 76.4 4.5 65 36-100 424-491 (500)
109 KOG1457 RNA binding protein (c 97.8 3.2E-05 6.9E-10 66.8 4.6 63 19-88 210-273 (284)
110 PF08952 DUF1866: Domain of un 97.7 0.0001 2.2E-09 60.1 6.5 77 16-101 24-107 (146)
111 KOG1190 Polypyrimidine tract-b 97.6 0.00014 3E-09 67.8 6.7 78 16-100 411-490 (492)
112 KOG2202 U2 snRNP splicing fact 97.5 3.5E-05 7.6E-10 67.8 1.7 65 36-101 83-148 (260)
113 KOG1365 RNA-binding protein Fu 97.5 5E-05 1.1E-09 70.1 2.4 75 20-99 162-241 (508)
114 KOG1365 RNA-binding protein Fu 97.5 0.00011 2.4E-09 67.9 4.4 78 19-100 280-361 (508)
115 KOG0129 Predicted RNA-binding 97.5 0.0004 8.8E-09 66.5 7.9 79 17-99 368-452 (520)
116 KOG0128 RNA-binding protein SA 97.4 0.0001 2.2E-09 74.0 2.6 78 19-100 736-814 (881)
117 KOG3152 TBP-binding protein, a 97.3 0.00012 2.7E-09 64.3 2.1 72 18-92 73-157 (278)
118 KOG1996 mRNA splicing factor [ 97.2 0.00083 1.8E-08 60.3 6.8 73 28-100 293-366 (378)
119 KOG0129 Predicted RNA-binding 97.1 0.0012 2.7E-08 63.3 7.1 62 18-83 258-326 (520)
120 PF15023 DUF4523: Protein of u 97.0 0.0038 8.3E-08 50.6 7.9 77 15-99 82-160 (166)
121 PF10309 DUF2414: Protein of u 97.0 0.0032 7E-08 43.9 6.5 55 18-83 4-62 (62)
122 KOG2068 MOT2 transcription fac 97.0 0.00026 5.7E-09 64.6 0.8 77 23-101 82-163 (327)
123 KOG0128 RNA-binding protein SA 96.9 5.7E-05 1.2E-09 75.8 -4.2 68 19-89 667-735 (881)
124 KOG2591 c-Mpl binding protein, 96.9 0.0011 2.3E-08 64.1 4.1 68 18-95 174-246 (684)
125 KOG4285 Mitotic phosphoprotein 96.8 0.0032 7E-08 56.8 6.7 69 18-97 196-266 (350)
126 KOG4676 Splicing factor, argin 96.8 0.0013 2.9E-08 61.1 4.1 75 20-98 8-86 (479)
127 PF08675 RNA_bind: RNA binding 96.8 0.0044 9.6E-08 45.7 5.8 56 18-85 8-64 (87)
128 PF07576 BRAP2: BRCA1-associat 96.7 0.013 2.8E-07 45.8 8.6 68 18-90 12-81 (110)
129 KOG4660 Protein Mei2, essentia 96.7 0.0035 7.6E-08 60.7 6.1 84 16-102 385-474 (549)
130 KOG2416 Acinus (induces apopto 96.6 0.0014 3E-08 63.9 3.1 76 15-99 440-520 (718)
131 KOG4307 RNA binding protein RB 96.5 0.0018 3.8E-08 64.2 3.2 77 17-97 432-510 (944)
132 KOG2135 Proteins containing th 96.5 0.0014 3.1E-08 62.2 2.3 73 19-100 372-445 (526)
133 KOG0112 Large RNA-binding prot 96.4 0.0044 9.5E-08 63.0 4.9 79 15-102 451-532 (975)
134 KOG4574 RNA-binding protein (c 96.3 0.003 6.5E-08 63.8 3.3 76 23-107 303-380 (1007)
135 PF03467 Smg4_UPF3: Smg-4/UPF3 96.2 0.0036 7.9E-08 53.0 2.8 81 19-102 7-99 (176)
136 PF04847 Calcipressin: Calcipr 96.2 0.013 2.9E-07 49.9 6.2 62 34-101 8-71 (184)
137 KOG0115 RNA-binding protein p5 96.2 0.0049 1.1E-07 54.5 3.5 75 20-98 32-111 (275)
138 KOG2193 IGF-II mRNA-binding pr 96.1 0.0043 9.3E-08 58.3 3.1 76 20-104 2-79 (584)
139 PF03880 DbpA: DbpA RNA bindin 96.0 0.023 4.9E-07 41.0 5.8 58 29-98 12-74 (74)
140 KOG0112 Large RNA-binding prot 95.9 0.0023 5E-08 65.0 0.2 81 15-99 368-449 (975)
141 PF11767 SET_assoc: Histone ly 95.7 0.052 1.1E-06 38.4 6.4 51 36-95 15-65 (66)
142 KOG2253 U1 snRNP complex, subu 95.5 0.0071 1.5E-07 59.7 2.0 72 15-98 37-108 (668)
143 KOG0804 Cytoplasmic Zn-finger 94.8 0.12 2.6E-06 49.3 7.8 67 19-90 74-142 (493)
144 KOG4210 Nuclear localization s 94.2 0.044 9.6E-07 49.9 3.4 80 19-101 88-168 (285)
145 KOG4019 Calcineurin-mediated s 93.7 0.054 1.2E-06 45.6 2.8 81 16-102 8-91 (193)
146 KOG2318 Uncharacterized conser 93.6 0.31 6.6E-06 47.9 7.9 78 16-96 171-301 (650)
147 KOG4483 Uncharacterized conser 93.2 0.17 3.6E-06 47.6 5.3 58 16-83 388-447 (528)
148 KOG2193 IGF-II mRNA-binding pr 92.9 0.0056 1.2E-07 57.6 -4.6 76 17-99 78-155 (584)
149 PF07530 PRE_C2HC: Associated 92.2 0.27 5.8E-06 35.0 4.2 63 36-101 2-65 (68)
150 PRK11634 ATP-dependent RNA hel 91.0 4.2 9.1E-05 41.3 12.9 61 28-100 497-562 (629)
151 smart00596 PRE_C2HC PRE_C2HC d 90.7 0.5 1.1E-05 33.6 4.2 62 36-100 2-64 (69)
152 PF10567 Nab6_mRNP_bdg: RNA-re 89.4 0.91 2E-05 41.2 5.8 82 15-99 11-106 (309)
153 PF03468 XS: XS domain; Inter 88.7 1.1 2.4E-05 35.3 5.3 56 23-81 13-75 (116)
154 KOG4676 Splicing factor, argin 88.5 0.074 1.6E-06 49.8 -1.7 63 20-90 152-215 (479)
155 KOG3262 H/ACA small nucleolar 88.2 2.5 5.5E-05 35.8 7.3 17 36-52 89-105 (215)
156 PF02714 DUF221: Domain of unk 82.1 1.6 3.4E-05 40.1 3.8 38 66-105 1-38 (325)
157 KOG4454 RNA binding protein (R 81.6 0.36 7.8E-06 42.1 -0.6 75 17-95 78-157 (267)
158 COG5638 Uncharacterized conser 81.2 4.5 9.7E-05 38.5 6.3 27 65-91 260-286 (622)
159 KOG2187 tRNA uracil-5-methyltr 81.0 1.3 2.8E-05 43.4 2.8 40 63-102 63-102 (534)
160 KOG2295 C2H2 Zn-finger protein 81.0 0.28 6.1E-06 47.9 -1.6 72 17-91 229-301 (648)
161 COG0724 RNA-binding proteins ( 80.2 1.8 3.9E-05 37.0 3.3 61 16-79 222-283 (306)
162 KOG4410 5-formyltetrahydrofola 75.7 5.8 0.00013 36.0 5.1 57 20-84 331-395 (396)
163 cd06405 PB1_Mekk2_3 The PB1 do 74.6 28 0.0006 25.2 7.4 61 25-97 15-76 (79)
164 PRK10629 EnvZ/OmpR regulon mod 73.8 25 0.00055 28.1 7.9 74 18-99 34-109 (127)
165 PF02426 MIase: Muconolactone 71.4 30 0.00065 26.0 7.4 66 24-95 9-81 (91)
166 cd04908 ACT_Bt0572_1 N-termina 71.2 30 0.00064 23.6 7.1 43 36-82 16-59 (66)
167 PRK11901 hypothetical protein; 70.7 12 0.00025 34.7 6.0 48 36-85 257-306 (327)
168 PF15513 DUF4651: Domain of un 68.8 13 0.00027 26.0 4.4 20 35-54 8-27 (62)
169 PRK14548 50S ribosomal protein 68.4 8.6 0.00019 28.5 3.8 57 21-83 23-81 (84)
170 PF07292 NID: Nmi/IFP 35 domai 68.4 5.2 0.00011 29.9 2.7 31 66-96 1-32 (88)
171 PF12687 DUF3801: Protein of u 66.4 12 0.00027 32.3 5.0 60 29-90 38-97 (204)
172 PF01037 AsnC_trans_reg: AsnC 65.9 38 0.00082 23.2 6.8 44 35-82 12-55 (74)
173 PF00403 HMA: Heavy-metal-asso 65.7 23 0.0005 23.7 5.4 51 23-82 4-58 (62)
174 PF14111 DUF4283: Domain of un 64.3 2.6 5.7E-05 33.9 0.4 60 36-101 32-92 (153)
175 COG1058 CinA Predicted nucleot 62.8 14 0.00029 33.3 4.7 79 1-84 157-243 (255)
176 KOG4365 Uncharacterized conser 62.2 1.6 3.4E-05 41.8 -1.3 74 23-100 8-81 (572)
177 TIGR03636 L23_arch archaeal ri 62.1 32 0.0007 25.0 5.8 57 20-82 15-73 (77)
178 KOG4213 RNA-binding protein La 61.6 16 0.00035 31.0 4.6 37 46-82 132-169 (205)
179 PF13721 SecD-TM1: SecD export 59.7 58 0.0013 24.8 7.2 60 18-85 30-91 (101)
180 TIGR03221 muco_delta muconolac 58.2 77 0.0017 23.8 8.0 66 25-96 9-81 (90)
181 PF11491 DUF3213: Protein of u 58.0 26 0.00055 25.9 4.6 56 37-98 15-74 (88)
182 PF14026 DUF4242: Protein of u 56.8 72 0.0016 23.0 8.1 59 23-87 5-70 (77)
183 cd04909 ACT_PDH-BS C-terminal 56.5 60 0.0013 22.0 6.4 46 36-83 16-62 (69)
184 PF14893 PNMA: PNMA 56.3 16 0.00034 34.1 4.1 22 19-43 18-40 (331)
185 COG5193 LHP1 La protein, small 54.6 6.5 0.00014 37.3 1.3 46 36-81 197-244 (438)
186 COG4010 Uncharacterized protei 54.3 26 0.00056 28.7 4.5 46 25-83 118-163 (170)
187 PF08544 GHMP_kinases_C: GHMP 53.7 58 0.0013 22.9 6.1 45 34-83 35-79 (85)
188 cd00412 pyrophosphatase Inorga 53.4 12 0.00027 30.9 2.6 38 35-83 116-153 (155)
189 KOG0256 1-aminocyclopropane-1- 53.2 19 0.00041 34.6 4.1 82 12-104 220-306 (471)
190 PF13291 ACT_4: ACT domain; PD 52.2 80 0.0017 22.2 6.8 50 36-85 21-71 (80)
191 PTZ00071 40S ribosomal protein 51.4 28 0.0006 28.1 4.3 46 29-78 35-86 (132)
192 cd06404 PB1_aPKC PB1 domain is 50.4 1E+02 0.0022 22.8 6.7 55 23-84 13-69 (83)
193 smart00666 PB1 PB1 domain. Pho 50.4 56 0.0012 23.1 5.5 52 25-84 16-69 (81)
194 PF11627 HnRNPA1: Nuclear fact 49.5 33 0.00071 21.2 3.4 26 219-255 5-31 (37)
195 PRK06737 acetolactate synthase 49.4 98 0.0021 22.4 6.7 57 23-85 9-66 (76)
196 cd04904 ACT_AAAH ACT domain of 48.6 92 0.002 21.9 6.3 49 36-85 15-65 (74)
197 KOG0226 RNA-binding proteins [ 48.6 9.8 0.00021 34.1 1.4 76 23-99 101-176 (290)
198 PRK11230 glycolate oxidase sub 48.5 60 0.0013 32.0 7.0 48 36-84 204-255 (499)
199 PF07292 NID: Nmi/IFP 35 domai 48.3 4.9 0.00011 30.1 -0.5 24 15-41 48-72 (88)
200 PF07876 Dabb: Stress responsi 48.1 70 0.0015 23.2 5.9 58 23-80 6-71 (97)
201 PF09869 DUF2096: Uncharacteri 48.1 83 0.0018 26.4 6.7 47 25-84 118-164 (169)
202 PF15063 TC1: Thyroid cancer p 48.1 2.9 6.3E-05 30.2 -1.6 50 19-83 25-78 (79)
203 PF14581 SseB_C: SseB protein 47.7 27 0.00059 26.5 3.7 79 21-100 7-90 (108)
204 COG0030 KsgA Dimethyladenosine 47.7 16 0.00034 32.9 2.6 33 20-55 97-129 (259)
205 cd04882 ACT_Bt0572_2 C-termina 47.4 80 0.0017 20.7 6.0 45 36-82 14-59 (65)
206 COG2608 CopZ Copper chaperone 47.3 50 0.0011 23.2 4.7 54 20-82 4-62 (71)
207 KOG0156 Cytochrome P450 CYP2 s 46.5 43 0.00094 32.9 5.7 61 23-93 37-97 (489)
208 PF01071 GARS_A: Phosphoribosy 46.3 64 0.0014 27.7 6.0 57 36-96 27-86 (194)
209 KOG3424 40S ribosomal protein 45.6 49 0.0011 26.2 4.7 55 20-78 21-84 (132)
210 KOG1295 Nonsense-mediated deca 45.4 22 0.00047 33.6 3.2 66 20-88 8-77 (376)
211 TIGR01743 purR_Bsub pur operon 45.3 48 0.001 30.0 5.3 44 33-83 40-85 (268)
212 PF03108 DBD_Tnp_Mut: MuDR fam 45.3 23 0.00049 24.5 2.6 30 68-99 8-37 (67)
213 cd04883 ACT_AcuB C-terminal AC 45.2 95 0.0021 21.0 6.6 45 36-82 16-63 (72)
214 PF05189 RTC_insert: RNA 3'-te 44.9 37 0.0008 25.7 4.0 48 23-70 15-64 (103)
215 PRK09213 pur operon repressor; 44.4 48 0.001 30.1 5.2 44 33-83 42-87 (271)
216 PF08734 GYD: GYD domain; Int 44.0 89 0.0019 23.2 5.9 44 36-83 23-67 (91)
217 PLN02373 soluble inorganic pyr 43.9 17 0.00038 31.1 2.2 36 36-83 139-174 (188)
218 cd04889 ACT_PDH-BS-like C-term 43.4 89 0.0019 20.2 6.0 42 36-80 13-55 (56)
219 PF09902 DUF2129: Uncharacteri 43.2 57 0.0012 23.3 4.4 42 36-87 12-53 (71)
220 KOG3262 H/ACA small nucleolar 43.0 2.1E+02 0.0047 24.5 11.4 11 92-102 132-142 (215)
221 cd04905 ACT_CM-PDT C-terminal 42.6 92 0.002 22.0 5.6 50 35-85 15-68 (80)
222 cd04929 ACT_TPH ACT domain of 42.2 1.2E+02 0.0027 21.5 6.2 49 35-85 14-65 (74)
223 CHL00123 rps6 ribosomal protei 41.5 93 0.002 23.4 5.7 67 26-94 14-91 (97)
224 KOG3499 60S ribosomal protein 41.5 1E+02 0.0022 21.4 5.2 49 35-84 5-61 (69)
225 PRK12866 YciI-like protein; Re 41.3 1.5E+02 0.0033 22.2 7.4 31 65-96 51-83 (97)
226 COG0150 PurM Phosphoribosylami 41.0 19 0.00041 33.6 2.1 47 36-86 276-322 (345)
227 PLN02707 Soluble inorganic pyr 40.9 21 0.00046 32.2 2.4 40 36-84 208-248 (267)
228 PRK10905 cell division protein 40.8 55 0.0012 30.4 5.0 47 36-84 259-307 (328)
229 PRK03670 competence damage-ind 40.6 59 0.0013 29.1 5.2 75 1-83 164-241 (252)
230 cd04931 ACT_PAH ACT domain of 40.5 1.5E+02 0.0033 22.0 7.7 60 22-84 17-79 (90)
231 cd04880 ACT_AAAH-PDT-like ACT 40.3 1.2E+02 0.0027 20.9 6.1 48 36-84 14-65 (75)
232 PRK00642 inorganic pyrophospha 40.2 23 0.0005 30.7 2.4 39 36-83 158-196 (205)
233 PRK13562 acetolactate synthase 40.2 1.5E+02 0.0033 21.9 6.8 58 23-86 9-68 (84)
234 COG3012 Uncharacterized protei 40.0 60 0.0013 26.6 4.5 67 36-104 64-134 (151)
235 PRK01178 rps24e 30S ribosomal 39.9 43 0.00094 25.6 3.6 47 29-79 30-81 (99)
236 CHL00030 rpl23 ribosomal prote 39.6 23 0.00049 26.8 2.0 33 20-55 20-54 (93)
237 PF09078 CheY-binding: CheY bi 39.4 82 0.0018 22.1 4.6 56 31-95 9-64 (65)
238 PF04026 SpoVG: SpoVG; InterP 39.4 54 0.0012 24.2 4.0 26 47-72 2-27 (84)
239 cd06410 PB1_UP2 Uncharacterize 39.2 1.4E+02 0.0031 22.5 6.3 66 25-95 28-94 (97)
240 PRK12865 YciI-like protein; Re 38.9 1.6E+02 0.0035 21.9 6.9 32 64-96 53-86 (97)
241 PF10915 DUF2709: Protein of u 38.7 58 0.0013 28.0 4.5 44 47-101 36-79 (238)
242 PRK12864 YciI-like protein; Re 38.7 1.6E+02 0.0034 21.6 7.5 28 63-91 49-76 (89)
243 KOG1232 Proteins containing th 38.3 46 0.001 31.8 4.2 55 23-81 229-287 (511)
244 COG4029 Uncharacterized protei 38.1 2.1E+02 0.0045 22.9 7.7 31 63-95 38-68 (142)
245 PTZ00191 60S ribosomal protein 37.8 85 0.0018 25.7 5.2 54 20-79 83-138 (145)
246 TIGR00288 conserved hypothetic 37.5 61 0.0013 27.0 4.4 34 23-56 31-64 (160)
247 PRK11611 enhanced serine sensi 37.4 24 0.00052 31.5 2.1 80 20-100 130-214 (246)
248 KOG0862 Synaptobrevin/VAMP-lik 36.8 31 0.00067 30.1 2.6 13 61-73 107-119 (216)
249 cd04878 ACT_AHAS N-terminal AC 36.7 1.2E+02 0.0027 19.9 6.3 47 36-84 15-63 (72)
250 PF10567 Nab6_mRNP_bdg: RNA-re 36.4 2E+02 0.0044 26.4 7.8 38 47-84 173-212 (309)
251 PF00585 Thr_dehydrat_C: C-ter 36.4 91 0.002 23.1 4.9 59 23-86 14-74 (91)
252 cd06396 PB1_NBR1 The PB1 domai 36.4 1.3E+02 0.0028 22.1 5.5 62 25-97 15-78 (81)
253 PF13689 DUF4154: Domain of un 36.1 97 0.0021 24.8 5.4 34 65-99 28-61 (145)
254 PF08156 NOP5NT: NOP5NT (NUC12 36.0 13 0.00027 26.3 0.1 19 65-83 46-64 (67)
255 KOG4008 rRNA processing protei 35.6 23 0.0005 31.4 1.7 34 15-51 36-70 (261)
256 PRK02302 hypothetical protein; 35.0 1E+02 0.0022 23.1 4.8 36 42-86 23-58 (89)
257 PRK08559 nusG transcription an 34.4 1.1E+02 0.0024 24.9 5.6 33 48-85 36-68 (153)
258 cd04886 ACT_ThrD-II-like C-ter 34.1 1.4E+02 0.003 19.7 6.8 48 36-83 13-64 (73)
259 PF13037 DUF3898: Domain of un 34.0 33 0.00072 25.5 2.0 48 36-83 34-89 (91)
260 PTZ00181 60S ribosomal protein 34.0 1.3E+02 0.0028 22.1 5.0 50 35-84 5-61 (82)
261 PF01842 ACT: ACT domain; Int 33.7 1.3E+02 0.0028 19.6 5.0 45 36-83 15-61 (66)
262 PF09162 Tap-RNA_bind: Tap, RN 33.7 1E+02 0.0022 23.0 4.7 33 66-98 46-80 (88)
263 PF00564 PB1: PB1 domain; Int 33.7 44 0.00096 23.7 2.7 52 25-85 17-71 (84)
264 PF14111 DUF4283: Domain of un 33.7 46 0.001 26.5 3.1 33 21-56 106-140 (153)
265 COG0225 MsrA Peptide methionin 33.6 65 0.0014 27.2 4.0 70 23-99 62-136 (174)
266 COG3254 Uncharacterized conser 33.4 1.4E+02 0.0031 23.0 5.5 43 36-81 27-69 (105)
267 PF13193 AMP-binding_C: AMP-bi 33.2 1.6E+02 0.0035 20.2 6.8 52 37-89 1-54 (73)
268 cd06402 PB1_p62 The PB1 domain 33.0 2.1E+02 0.0045 21.3 6.8 18 67-84 59-76 (87)
269 KOG2040 Glycine dehydrogenase 32.9 15 0.00033 37.3 0.2 23 66-88 513-535 (1001)
270 PF11080 DUF2622: Protein of u 32.8 1.9E+02 0.004 22.0 6.0 62 16-83 5-72 (96)
271 PF03439 Spt5-NGN: Early trans 32.6 76 0.0016 23.1 3.9 24 62-85 43-66 (84)
272 COG5507 Uncharacterized conser 32.2 44 0.00095 25.5 2.5 21 63-83 66-86 (117)
273 PF01282 Ribosomal_S24e: Ribos 32.2 2E+02 0.0044 21.0 6.4 43 36-79 16-63 (84)
274 COG3660 Predicted nucleoside-d 32.2 1.3E+02 0.0028 27.5 5.8 30 18-47 128-158 (329)
275 PTZ00136 eukaryotic translatio 32.1 1.4E+02 0.0031 26.6 6.2 54 26-82 72-131 (247)
276 PTZ00481 Membrane attack compl 31.8 18 0.00039 34.9 0.4 61 23-86 210-279 (524)
277 PF11823 DUF3343: Protein of u 31.8 48 0.001 23.3 2.6 24 65-88 3-26 (73)
278 COG1369 POP5 RNase P/RNase MRP 31.8 2.4E+02 0.0052 22.5 6.7 33 63-97 67-99 (124)
279 PRK05772 translation initiatio 31.5 1E+02 0.0022 29.2 5.4 46 36-83 6-56 (363)
280 PRK06728 aspartate-semialdehyd 31.4 1.7E+02 0.0037 27.5 6.8 19 65-83 255-273 (347)
281 cd05992 PB1 The PB1 domain is 31.4 1.8E+02 0.0038 20.3 5.6 48 28-84 19-69 (81)
282 PRK13259 regulatory protein Sp 31.3 80 0.0017 23.9 3.8 26 47-72 2-27 (94)
283 PF11382 DUF3186: Protein of u 31.1 1.6E+02 0.0034 27.1 6.5 63 10-85 74-138 (308)
284 COG5236 Uncharacterized conser 31.0 1.2E+02 0.0026 28.6 5.5 50 36-93 265-314 (493)
285 TIGR00387 glcD glycolate oxida 31.0 1E+02 0.0022 29.5 5.4 47 36-83 147-197 (413)
286 PF07237 DUF1428: Protein of u 30.9 1.6E+02 0.0034 22.7 5.4 47 37-83 24-85 (103)
287 PF11215 DUF3010: Protein of u 30.9 92 0.002 25.3 4.3 39 39-83 54-92 (138)
288 PF11411 DNA_ligase_IV: DNA li 30.5 36 0.00079 21.0 1.5 16 28-46 19-34 (36)
289 KOG2671 Putative RNA methylase 30.5 54 0.0012 31.0 3.2 17 64-80 41-57 (421)
290 cd00874 RNA_Cyclase_Class_II R 30.2 49 0.0011 30.8 3.0 47 23-70 191-237 (326)
291 PRK11895 ilvH acetolactate syn 30.0 2.3E+02 0.0049 23.6 6.7 49 36-85 17-66 (161)
292 cd04881 ACT_HSDH-Hom ACT_HSDH_ 29.7 1.8E+02 0.0038 19.5 6.3 46 36-85 15-65 (79)
293 KOG3702 Nuclear polyadenylated 29.6 33 0.00071 34.7 1.8 68 23-94 516-583 (681)
294 KOG3447 Mitochondrial/chloropl 29.4 53 0.0011 26.5 2.6 69 20-101 62-132 (150)
295 cd03703 aeIF5B_II aeIF5B_II: T 29.2 1.6E+02 0.0034 23.0 5.2 47 36-83 56-108 (110)
296 KOG1635 Peptide methionine sul 29.2 1.1E+02 0.0024 25.9 4.6 60 20-85 76-137 (191)
297 cd02116 ACT ACT domains are co 29.1 1.3E+02 0.0028 17.8 6.8 46 36-83 13-59 (60)
298 TIGR00587 nfo apurinic endonuc 28.9 1E+02 0.0022 27.6 4.8 58 20-83 138-201 (274)
299 COG2088 SpoVG Uncharacterized 28.4 78 0.0017 23.7 3.2 27 47-73 2-28 (95)
300 COG1892 Phosphoenolpyruvate ca 28.2 1.3E+02 0.0028 29.3 5.4 71 3-87 229-304 (488)
301 cd06398 PB1_Joka2 The PB1 doma 28.2 2.5E+02 0.0055 20.9 6.9 30 66-95 56-86 (91)
302 PF00719 Pyrophosphatase: Inor 27.9 90 0.002 25.8 3.9 38 35-83 113-150 (156)
303 PLN02971 tryptophan N-hydroxyl 27.8 1.1E+02 0.0023 30.2 5.2 60 23-92 68-129 (543)
304 COG0430 RCL1 RNA 3'-terminal p 27.4 1.3E+02 0.0029 28.1 5.2 48 23-71 195-242 (341)
305 PRK06545 prephenate dehydrogen 26.8 2.7E+02 0.0058 25.9 7.4 56 25-84 296-352 (359)
306 COG1707 ACT domain-containing 26.7 1.3E+02 0.0028 25.5 4.5 62 34-97 55-120 (218)
307 KOG2891 Surface glycoprotein [ 26.7 41 0.00089 30.6 1.8 19 36-54 176-194 (445)
308 COG3560 FMR2 Predicted oxidore 26.5 71 0.0015 27.2 3.0 20 59-78 88-107 (200)
309 COG2221 DsrA Dissimilatory sul 26.4 1.3E+02 0.0029 27.8 5.1 61 20-88 30-92 (317)
310 PF01781 Ribosomal_L38e: Ribos 26.3 2E+02 0.0043 20.5 4.8 51 34-84 3-61 (69)
311 PLN02805 D-lactate dehydrogena 26.3 1.6E+02 0.0034 29.5 6.0 47 36-83 281-331 (555)
312 COG5584 Predicted small secret 26.3 1.1E+02 0.0023 23.4 3.6 31 25-58 29-59 (103)
313 PRK11169 leucine-responsive tr 26.1 3.6E+02 0.0078 22.0 8.3 45 36-84 91-136 (164)
314 PRK07868 acyl-CoA synthetase; 26.0 2.9E+02 0.0064 29.6 8.4 55 36-90 872-931 (994)
315 KOG0821 Predicted ribosomal RN 25.9 62 0.0013 28.8 2.7 26 15-43 126-151 (326)
316 PRK02230 inorganic pyrophospha 25.8 34 0.00073 29.2 1.0 38 35-83 118-155 (184)
317 KOG2854 Possible pfkB family c 25.8 55 0.0012 30.6 2.4 19 64-82 213-231 (343)
318 PLN00110 flavonoid 3',5'-hydro 25.5 1.8E+02 0.0038 28.4 6.2 50 23-82 42-91 (504)
319 PRK02886 hypothetical protein; 25.5 1.8E+02 0.0039 21.7 4.7 36 42-86 21-56 (87)
320 PF09383 NIL: NIL domain; Int 25.5 1.6E+02 0.0034 20.6 4.4 58 23-85 7-68 (76)
321 PRK11370 YciI-like protein; Re 25.3 2.9E+02 0.0062 20.5 6.4 26 64-90 59-84 (99)
322 smart00650 rADc Ribosomal RNA 25.2 73 0.0016 26.0 3.0 19 23-44 82-100 (169)
323 PF12829 Mhr1: Transcriptional 25.0 1.5E+02 0.0032 22.3 4.2 61 16-83 10-71 (91)
324 PF14401 RLAN: RimK-like ATPgr 24.9 94 0.002 25.6 3.5 42 38-79 104-146 (153)
325 COG0769 MurE UDP-N-acetylmuram 24.7 2.5E+02 0.0055 27.5 7.0 52 36-96 309-365 (475)
326 PF03802 CitX: Apo-citrate lya 24.6 4.1E+02 0.009 22.1 9.5 74 23-99 34-117 (170)
327 PRK01250 inorganic pyrophospha 24.5 56 0.0012 27.7 2.1 37 36-83 133-169 (176)
328 smart00457 MACPF membrane-atta 24.3 1.5E+02 0.0032 25.0 4.7 27 23-52 30-58 (194)
329 PF09612 HtrL_YibB: Bacterial 24.3 77 0.0017 28.7 3.1 56 23-93 14-69 (271)
330 PLN02655 ent-kaurene oxidase 24.2 1.4E+02 0.003 28.6 5.1 38 36-82 23-60 (466)
331 PRK00136 rpsH 30S ribosomal pr 24.1 54 0.0012 26.1 1.9 31 22-56 23-53 (130)
332 PF04127 DFP: DNA / pantothena 23.6 2E+02 0.0043 24.3 5.4 61 18-83 18-79 (185)
333 COG5470 Uncharacterized conser 23.6 2E+02 0.0044 21.8 4.7 43 36-80 23-70 (96)
334 PHA03075 glutaredoxin-like pro 23.4 3.8E+02 0.0082 21.2 6.8 32 37-71 58-89 (123)
335 smart00115 CASc Caspase, inter 23.2 3.8E+02 0.0083 23.4 7.3 25 23-47 14-44 (241)
336 PLN03134 glycine-rich RNA-bind 23.1 1.7E+02 0.0037 23.5 4.7 26 69-96 79-104 (144)
337 PLN02738 carotene beta-ring hy 23.1 1.7E+02 0.0036 29.8 5.6 39 35-82 154-192 (633)
338 PF14657 Integrase_AP2: AP2-li 23.1 1.3E+02 0.0029 19.0 3.3 29 55-83 9-37 (46)
339 TIGR00119 acolac_sm acetolacta 23.1 3.8E+02 0.0083 22.1 6.8 49 36-85 16-65 (157)
340 PRK12863 YciI-like protein; Re 23.1 3.1E+02 0.0067 20.1 6.7 33 64-97 52-86 (94)
341 COG2061 ACT-domain-containing 23.0 3.3E+02 0.0072 22.6 6.2 47 47-95 115-163 (170)
342 KOG3062 RNA polymerase II elon 22.8 2.1E+02 0.0046 25.6 5.4 36 23-58 6-41 (281)
343 cd01212 JIP JNK-interacting pr 22.8 64 0.0014 26.4 2.1 7 63-69 92-98 (148)
344 TIGR03124 ctirate_citX holo-AC 22.8 4.5E+02 0.0098 21.9 7.4 72 24-98 33-114 (165)
345 PRK11179 DNA-binding transcrip 22.7 4E+02 0.0087 21.4 6.9 44 36-83 84-128 (153)
346 COG2004 RPS24A Ribosomal prote 22.6 1.8E+02 0.0039 22.6 4.4 47 28-78 30-81 (107)
347 PF14528 LAGLIDADG_3: LAGLIDAD 22.4 2.7E+02 0.0059 19.2 6.5 47 30-82 29-75 (77)
348 smart00738 NGN In Spt5p, this 22.4 95 0.0021 23.0 2.9 22 64-85 60-81 (106)
349 PRK00549 competence damage-ind 22.2 86 0.0019 30.1 3.2 24 19-45 180-204 (414)
350 PTZ00372 endonuclease 4-like p 21.9 1.7E+02 0.0036 28.3 5.0 76 20-101 269-350 (413)
351 PLN03234 cytochrome P450 83B1; 21.9 2.8E+02 0.0061 26.7 6.8 59 23-91 39-97 (499)
352 PF09250 Prim-Pol: Bifunctiona 21.8 2E+02 0.0043 22.9 4.9 33 36-74 35-67 (163)
353 COG0221 Ppa Inorganic pyrophos 21.8 92 0.002 26.2 2.9 37 36-83 129-165 (171)
354 PF08004 DUF1699: Protein of u 21.6 1.3E+02 0.0028 24.0 3.5 28 26-56 24-51 (131)
355 cd04930 ACT_TH ACT domain of t 21.5 3.9E+02 0.0085 20.7 7.8 61 22-85 44-106 (115)
356 PF13068 DUF3932: Protein of u 21.4 19 0.00042 25.3 -1.0 21 23-46 23-43 (81)
357 KOG4388 Hormone-sensitive lipa 21.4 1.1E+02 0.0024 31.1 3.7 59 17-83 787-851 (880)
358 PRK12450 foldase protein PrsA; 21.4 1.7E+02 0.0036 26.9 4.8 39 29-84 132-170 (309)
359 cd01968 Nitrogenase_NifE_I Nit 21.4 81 0.0018 30.0 2.8 29 23-54 164-192 (410)
360 PRK13014 methionine sulfoxide 21.1 2E+02 0.0044 24.5 4.9 20 23-45 64-83 (186)
361 COG0318 CaiC Acyl-CoA syntheta 21.0 4.2E+02 0.009 25.9 7.8 51 29-82 433-491 (534)
362 PRK07377 hypothetical protein; 21.0 1.6E+02 0.0036 25.0 4.2 17 67-83 112-128 (184)
363 TIGR03272 methan_mark_6 putati 20.9 4.5E+02 0.0097 21.2 7.0 32 63-96 30-61 (132)
364 PRK15321 putative type III sec 20.9 29 0.00063 26.4 -0.3 45 23-82 26-75 (120)
365 PF00521 DNA_topoisoIV: DNA gy 20.7 1.1E+02 0.0023 29.6 3.5 57 20-83 217-278 (426)
366 TIGR02542 B_forsyth_147 Bacter 20.6 63 0.0014 25.5 1.5 46 26-74 82-130 (145)
367 PF07357 DRAT: Dinitrogenase r 20.6 1.4E+02 0.003 26.9 3.9 36 17-57 194-230 (262)
368 cd04874 ACT_Af1403 N-terminal 20.6 2.6E+02 0.0056 18.3 5.8 46 36-84 15-61 (72)
369 TIGR00401 msrA methionine-S-su 20.4 1.4E+02 0.0031 24.4 3.7 19 23-44 56-74 (149)
370 cd08367 P53 P53 DNA-binding do 20.3 54 0.0012 27.8 1.2 51 36-86 20-71 (179)
371 PF08503 DapH_N: Tetrahydrodip 20.2 3.7E+02 0.0079 19.8 5.9 31 67-98 44-74 (83)
372 cd01648 TERT TERT: Telomerase 20.2 2.3E+02 0.005 21.7 4.8 34 68-101 64-97 (119)
373 PF14751 DUF4474: Domain of un 20.1 1.9E+02 0.0042 25.7 4.6 40 65-104 147-193 (241)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=1.4e-20 Score=154.32 Aligned_cols=85 Identities=29% Similarity=0.529 Sum_probs=79.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++|| ++|+++|++|++|++|+|++|+.|+++++||||+|+++++|++||++||+++|++++|+
T Consensus 31 ~~~~~~lfVgnL~~~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~ 107 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDD---ASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIR 107 (144)
T ss_pred cCCCCEEEEeCCCCCCCH---HHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456778 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|++++++..
T Consensus 108 V~~a~~~~~ 116 (144)
T PLN03134 108 VNPANDRPS 116 (144)
T ss_pred EEeCCcCCC
Confidence 999976543
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.76 E-value=8.6e-18 Score=156.22 Aligned_cols=85 Identities=20% Similarity=0.413 Sum_probs=77.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC--cee
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQV 93 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g--~~i 93 (279)
...++| |.|||++||| ++|+++|++|++|++|+|++|+.|+++|+||||+|+++++|++||++||+++|++ ++|
T Consensus 191 ~~~~~lfV~nLp~~vte---e~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l 267 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITD---DQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPL 267 (346)
T ss_pred cccceeEEeCCCCcccH---HHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeE
Confidence 345678 9999999999 9999999999999999999999999999999999999999999999999998876 689
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|++|+++.+.
T Consensus 268 ~V~~a~~~~~~ 278 (346)
T TIGR01659 268 TVRLAEEHGKA 278 (346)
T ss_pred EEEECCccccc
Confidence 99998875443
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=1.1e-17 Score=155.59 Aligned_cols=84 Identities=21% Similarity=0.385 Sum_probs=78.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.+||+++|| ++|+++|++|++|++|+|++|+.|+++|+||||+|+++++|++||++||+++|.+++|
T Consensus 103 ~~~~~~~LfVgnLp~~~te---~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i 179 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTD---RELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRL 179 (346)
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCcee
Confidence 34456788 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCC
Q 023632 94 EVKKAEPK 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|+++++.
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99998764
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=3.8e-17 Score=151.76 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=77.6
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
++| |.|||++|+| ++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.||+.+|++++|+|.++
T Consensus 270 ~~lfV~NL~~~~~e---~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 270 YCIFVYNLSPDTDE---TVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred cEEEEeCCCCCCCH---HHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 368 9999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023632 99 EPKKP 103 (279)
Q Consensus 99 ~~~~~ 103 (279)
..+..
T Consensus 347 ~~~~~ 351 (352)
T TIGR01661 347 TNKAY 351 (352)
T ss_pred cCCCC
Confidence 88754
No 5
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=3.5e-17 Score=141.07 Aligned_cols=82 Identities=22% Similarity=0.404 Sum_probs=79.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+..+| |.||+++++| ++|+++|.+|+.|..|.|.+|++|+.+||||||+|++.++|++||+.||++-++.-.|+|
T Consensus 187 ~D~~tvRvtNLsed~~E---~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMRE---DDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred CccceeEEecCccccCh---hHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 366789 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 023632 96 KKAEPK 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
+|++|+
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999986
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.70 E-value=6.8e-17 Score=150.09 Aligned_cols=83 Identities=20% Similarity=0.471 Sum_probs=78.3
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+.++| |+|||.+++| ++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.||+++|.+++|+|+
T Consensus 2 ~~~~l~V~nLp~~~~e---~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~ 78 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQ---EEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVS 78 (352)
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEE
Confidence 35678 9999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 023632 97 KAEPKKP 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
+++++..
T Consensus 79 ~a~~~~~ 85 (352)
T TIGR01661 79 YARPSSD 85 (352)
T ss_pred eeccccc
Confidence 9987653
No 7
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.2e-16 Score=137.29 Aligned_cols=82 Identities=26% Similarity=0.453 Sum_probs=75.6
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.|...++| |++|+|+++. ++|+++|++||+|+++.|++|+.|+++|||+||+|.|.|+|++|++. ..-.|++|+.
T Consensus 8 ~DT~~TKifVggL~w~T~~---~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~a 83 (247)
T KOG0149|consen 8 GDTTFTKIFVGGLAWETHK---ETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKA 83 (247)
T ss_pred CCceEEEEEEcCcccccch---HHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccc
Confidence 35556778 9999999999 99999999999999999999999999999999999999999999998 4578999999
Q ss_pred EEeeccC
Q 023632 94 EVKKAEP 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
.|++|.-
T Consensus 84 NcnlA~l 90 (247)
T KOG0149|consen 84 NCNLASL 90 (247)
T ss_pred ccchhhh
Confidence 9998865
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.67 E-value=1.2e-16 Score=142.84 Aligned_cols=83 Identities=22% Similarity=0.429 Sum_probs=76.3
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+.....++| |.|||+...| -||+.+|++||+|++|+||.+ ..-+|||+||+|++.+||++|-++||+.+|.+|+
T Consensus 91 ~s~~~pkRLhVSNIPFrFRd---pDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRk 165 (376)
T KOG0125|consen 91 SSKDTPKRLHVSNIPFRFRD---PDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRK 165 (376)
T ss_pred CCCCCCceeEeecCCccccC---ccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceE
Confidence 344556899 9999999999 999999999999999999988 3568999999999999999999999999999999
Q ss_pred eEEeeccCC
Q 023632 93 VEVKKAEPK 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|..|..+
T Consensus 166 IEVn~ATar 174 (376)
T KOG0125|consen 166 IEVNNATAR 174 (376)
T ss_pred EEEeccchh
Confidence 999998765
No 9
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.67 E-value=1.3e-16 Score=134.46 Aligned_cols=86 Identities=24% Similarity=0.415 Sum_probs=79.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+......| |.||...++. ++|..+|++||.|.+|.|++|+.|.++++||||.|.+..+|++||++|++++|+++.|
T Consensus 9 dv~gm~SLkVdNLTyRTsp---d~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSP---DDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred CcccceeEEecceeccCCH---HHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 33455778 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 023632 94 EVKKAEPKKP 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|++|+--..
T Consensus 86 rVq~arygr~ 95 (256)
T KOG4207|consen 86 RVQMARYGRP 95 (256)
T ss_pred eehhhhcCCC
Confidence 9999975443
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.67 E-value=2.7e-16 Score=111.67 Aligned_cols=69 Identities=32% Similarity=0.691 Sum_probs=66.1
Q ss_pred e-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 22 M-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 22 l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
| |.|||+++|+ ++|+++|++|++|+.++|+.+ .+++++++|||+|+++++|++||+.||+++|++++|+
T Consensus 1 l~v~nlp~~~t~---~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTE---EELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSH---HHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCH---HHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 5 9999999999 999999999999999999998 6889999999999999999999999999999999885
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=1.7e-15 Score=124.78 Aligned_cols=77 Identities=18% Similarity=0.400 Sum_probs=70.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |+||+.++++ .||+.+|.+||+|..|+|.+++ .+||||||+++.+|++|+..||+++|++..|+|
T Consensus 8 ~~~~kVYVGnL~~~a~k---~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rV 79 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATK---RELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRV 79 (195)
T ss_pred CCCceEEeccCCCCcch---HHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEE
Confidence 346778 9999999999 9999999999999999998764 789999999999999999999999999999999
Q ss_pred eeccCC
Q 023632 96 KKAEPK 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++.+-+
T Consensus 80 E~S~G~ 85 (195)
T KOG0107|consen 80 ELSTGR 85 (195)
T ss_pred EeecCC
Confidence 988654
No 12
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=3.3e-15 Score=132.08 Aligned_cols=89 Identities=16% Similarity=0.367 Sum_probs=82.4
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+-++| |.-|+.+++| ++|++.|++||+|+.|.||+|+.|++++|||||+|+++.++.+|.+..++++|+++.|.|
T Consensus 99 DPy~TLFv~RLnydT~E---skLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~V 175 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSE---SKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILV 175 (335)
T ss_pred CccceeeeeeccccccH---HHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEE
Confidence 456888 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCC
Q 023632 96 KKAEPKKPNLPQP 108 (279)
Q Consensus 96 ~~a~~~~~~~~~~ 108 (279)
.....+....+.+
T Consensus 176 DvERgRTvkgW~P 188 (335)
T KOG0113|consen 176 DVERGRTVKGWLP 188 (335)
T ss_pred Eeccccccccccc
Confidence 9887766655544
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=4.5e-15 Score=145.75 Aligned_cols=84 Identities=21% Similarity=0.420 Sum_probs=78.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||+++++ ++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.||+++|+++.|+|.
T Consensus 203 ~~~rLfVgnLp~~vte---edLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~ 279 (612)
T TIGR01645 203 KFNRIYVASVHPDLSE---TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVG 279 (612)
T ss_pred ccceEEeecCCCCCCH---HHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44688 9999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 023632 97 KAEPKKPN 104 (279)
Q Consensus 97 ~a~~~~~~ 104 (279)
++.++...
T Consensus 280 kAi~pP~~ 287 (612)
T TIGR01645 280 KCVTPPDA 287 (612)
T ss_pred ecCCCccc
Confidence 99875443
No 14
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.7e-15 Score=118.91 Aligned_cols=81 Identities=16% Similarity=0.240 Sum_probs=77.0
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..++++| |+||++.++| ++|.++|+++|+|+.|.|-.|+.+..+.|||||+|.+.++|+.||+.+|+..|+.++|+
T Consensus 33 ~r~S~tvyVgNlSfyttE---EqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir 109 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTE---EQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIR 109 (153)
T ss_pred HhhcceEEEeeeeeeecH---HHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccccccee
Confidence 3567889 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeecc
Q 023632 95 VKKAE 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|.+.-
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99864
No 15
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.59 E-value=5.2e-15 Score=105.81 Aligned_cols=69 Identities=26% Similarity=0.565 Sum_probs=63.9
Q ss_pred e-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 22 M-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 22 l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
| |.|||+++++ ++|+++|+.++.|++|.++++++ ++++++|||+|.++++|++||+.+++++|++++|+
T Consensus 1 v~i~nlp~~~~~---~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTE---EDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--H---HHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 5 9999999999 99999999999999999999987 89999999999999999999999998999999885
No 16
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.59 E-value=3.8e-14 Score=138.92 Aligned_cols=75 Identities=25% Similarity=0.453 Sum_probs=69.1
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcC--CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~--G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..++| |.|||++++| ++|+++|++| ++|++|+++++ ||||+|+++++|++||++||+++|++++|+
T Consensus 232 ~~k~LfVgNL~~~~te---e~L~~~F~~f~~G~I~rV~~~rg--------fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~ 300 (578)
T TIGR01648 232 KVKILYVRNLMTTTTE---EIIEKSFSEFKPGKVERVKKIRD--------YAFVHFEDREDAVKAMDELNGKELEGSEIE 300 (578)
T ss_pred cccEEEEeCCCCCCCH---HHHHHHHHhcCCCceEEEEeecC--------eEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 35678 9999999999 9999999999 99999988744 999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|++|+++..
T Consensus 301 V~~Akp~~~ 309 (578)
T TIGR01648 301 VTLAKPVDK 309 (578)
T ss_pred EEEccCCCc
Confidence 999988654
No 17
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.1e-14 Score=128.60 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=70.6
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||++++| ++|++||+.||+|++|+|++|++ +++||||+|+++++|++||. ||+.+|.++.|+|.
T Consensus 3 ~~rtVfVgNLs~~tTE---~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt 75 (260)
T PLN03120 3 QVRTVKVSNVSLKATE---RDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTIT 75 (260)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEE
Confidence 35788 9999999999 99999999999999999999864 46899999999999999995 79999999999999
Q ss_pred eccCC
Q 023632 97 KAEPK 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
++..-
T Consensus 76 ~a~~~ 80 (260)
T PLN03120 76 PAEDY 80 (260)
T ss_pred eccCC
Confidence 98743
No 18
>smart00360 RRM RNA recognition motif.
Probab=99.57 E-value=1.6e-14 Score=101.08 Aligned_cols=71 Identities=34% Similarity=0.657 Sum_probs=67.4
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
|.|||+++++ ++|+++|++|+.|++|.|+.++.+.+++++|||+|.+.++|++||+.|++..|.+++|+|+
T Consensus 1 i~~l~~~~~~---~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTE---EELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCH---HHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 6799999999 9999999999999999999998889999999999999999999999999999999999874
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.56 E-value=1.2e-14 Score=142.82 Aligned_cols=80 Identities=21% Similarity=0.400 Sum_probs=75.7
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |+|||++++| ++|+++|++||+|++|+|++|+.|+++|+||||+|+++++|++||+.||+++|++++|+|
T Consensus 105 ~~~~rLfVGnLp~~~tE---e~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 105 AIMCRVYVGSISFELRE---DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred cCCCEEEEcCCCCCCCH---HHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 345788 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 023632 96 KKAE 99 (279)
Q Consensus 96 ~~a~ 99 (279)
.+..
T Consensus 182 ~rp~ 185 (612)
T TIGR01645 182 GRPS 185 (612)
T ss_pred cccc
Confidence 8654
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=3.4e-14 Score=136.70 Aligned_cols=80 Identities=36% Similarity=0.596 Sum_probs=76.5
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||.++|| ++|+++|++||+|+.|.|++++.++++++||||+|.++++|++||+.||+++|.+++|+|.
T Consensus 185 ~~~~l~v~nl~~~~te---~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~ 261 (457)
T TIGR01622 185 NFLKLYVGNLHFNITE---QELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVG 261 (457)
T ss_pred CCCEEEEcCCCCCCCH---HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEE
Confidence 35788 9999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccC
Q 023632 97 KAEP 100 (279)
Q Consensus 97 ~a~~ 100 (279)
++..
T Consensus 262 ~a~~ 265 (457)
T TIGR01622 262 YAQD 265 (457)
T ss_pred EccC
Confidence 9874
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.54 E-value=1.9e-14 Score=142.12 Aligned_cols=85 Identities=21% Similarity=0.410 Sum_probs=78.9
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.||++++|+ ++|+++|++||+|++|+|+.| .++++++||||+|+++++|++||++||++.|++++|+
T Consensus 282 ~~~~~~l~V~nl~~~~~~---~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~ 357 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTD---EKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLY 357 (562)
T ss_pred ccCCCEEEEeCCCCccCH---HHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeE
Confidence 3455678 9999999999 999999999999999999999 6899999999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 023632 95 VKKAEPKKPN 104 (279)
Q Consensus 95 V~~a~~~~~~ 104 (279)
|.+|+++..+
T Consensus 358 V~~a~~k~~~ 367 (562)
T TIGR01628 358 VALAQRKEQR 367 (562)
T ss_pred EEeccCcHHH
Confidence 9999887644
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=9.9e-15 Score=127.60 Aligned_cols=79 Identities=22% Similarity=0.490 Sum_probs=76.0
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeecc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~ 99 (279)
.| |..|..+++. ++|++.|.+||+|.+++|++|..|.|+|||+||.|.+.++||+||+.||++.|..|.|+..+|.
T Consensus 64 hvfvgdls~eI~~---e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWAT 140 (321)
T KOG0148|consen 64 HVFVGDLSPEIDN---EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWAT 140 (321)
T ss_pred eEEehhcchhcch---HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccc
Confidence 35 9999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 023632 100 PKK 102 (279)
Q Consensus 100 ~~~ 102 (279)
.|.
T Consensus 141 RKp 143 (321)
T KOG0148|consen 141 RKP 143 (321)
T ss_pred cCc
Confidence 765
No 23
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6e-15 Score=125.58 Aligned_cols=84 Identities=30% Similarity=0.517 Sum_probs=79.7
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |++|..+|+| .-|...|-.||.|++|+|+.|.++.++|+|+||+|+..|+|.+||..||..+|.++.|+|
T Consensus 8 ~~KrtlYVGGladeVte---kvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirV 84 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTE---KVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRV 84 (298)
T ss_pred ccceeEEeccchHHHHH---HHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEE
Confidence 345778 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 023632 96 KKAEPKKP 103 (279)
Q Consensus 96 ~~a~~~~~ 103 (279)
.+|+|.+.
T Consensus 85 N~AkP~ki 92 (298)
T KOG0111|consen 85 NLAKPEKI 92 (298)
T ss_pred eecCCccc
Confidence 99998654
No 24
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=6.1e-14 Score=136.59 Aligned_cols=82 Identities=21% Similarity=0.388 Sum_probs=77.2
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||+++++ ++|+++|++||.|+.|.|++++.|+++++||||+|++.++|++||+.||+++|.+++|+|+
T Consensus 294 ~~~~l~v~nlp~~~~~---~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~ 370 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGE---DQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQ 370 (509)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34678 9999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCC
Q 023632 97 KAEPKK 102 (279)
Q Consensus 97 ~a~~~~ 102 (279)
+|....
T Consensus 371 ~a~~~~ 376 (509)
T TIGR01642 371 RACVGA 376 (509)
T ss_pred ECccCC
Confidence 987543
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.53 E-value=3e-14 Score=139.64 Aligned_cols=77 Identities=23% Similarity=0.373 Sum_probs=69.5
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC-CceeEE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVEV 95 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-g~~i~V 95 (279)
..++| |.|||++++| ++|+++|++||+|++|+|++| .++++|+||||+|+++|+|++||+.||+.+|. ++.|.|
T Consensus 57 ~~~~lFVgnLp~~~tE---d~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYE---DELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCH---HHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 35788 9999999999 999999999999999999999 79999999999999999999999999998885 666655
Q ss_pred eec
Q 023632 96 KKA 98 (279)
Q Consensus 96 ~~a 98 (279)
..+
T Consensus 133 ~~S 135 (578)
T TIGR01648 133 CIS 135 (578)
T ss_pred ccc
Confidence 433
No 26
>smart00362 RRM_2 RNA recognition motif.
Probab=99.53 E-value=6.2e-14 Score=98.46 Aligned_cols=71 Identities=28% Similarity=0.600 Sum_probs=66.2
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+| |.|||.++++ ++|+++|++|++|+++.++.++ ++++++|||+|.+.++|++|++.+++..|.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~---~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTE---EDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCH---HHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 46 9999999999 9999999999999999999886 6788999999999999999999999999999999874
No 27
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=3.9e-14 Score=139.88 Aligned_cols=77 Identities=27% Similarity=0.443 Sum_probs=73.9
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeecc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~ 99 (279)
+| |+|||++||| ++|+++|++||+|++|+|++|+.|+++++||||+|.++++|++||+.||.+.|.++.|+|.++.
T Consensus 2 sl~VgnLp~~vte---~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTE---AKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 67 9999999999 9999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q 023632 100 P 100 (279)
Q Consensus 100 ~ 100 (279)
.
T Consensus 79 ~ 79 (562)
T TIGR01628 79 R 79 (562)
T ss_pred c
Confidence 3
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=1.1e-14 Score=134.75 Aligned_cols=79 Identities=24% Similarity=0.432 Sum_probs=72.6
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..+.| |+||+.+||| +.|+++|++||+|++|+.++| ||||.|.+.++|.+||+.+|+++|++..|+|.
T Consensus 258 ~VKvLYVRNL~~~tTe---E~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTE---ETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred heeeeeeeccchhhhH---HHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 45778 9999999999 999999999999999999877 99999999999999999999999999999999
Q ss_pred eccCCCCCCCC
Q 023632 97 KAEPKKPNLPQ 107 (279)
Q Consensus 97 ~a~~~~~~~~~ 107 (279)
+|+|..+....
T Consensus 327 LAKP~~k~k~~ 337 (506)
T KOG0117|consen 327 LAKPVDKKKKE 337 (506)
T ss_pred ecCChhhhccc
Confidence 99997655433
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.52 E-value=4.6e-14 Score=135.73 Aligned_cols=83 Identities=22% Similarity=0.368 Sum_probs=76.4
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
+...++| |.|||+++++ ++|+++|++||+|++|+|++|+.|+++++||||+|.++++|++||+ ||++.|.+++|.
T Consensus 86 ~~~~~~l~V~nlp~~~~~---~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~ 161 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARE---RDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPII 161 (457)
T ss_pred ccCCcEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeE
Confidence 4456789 9999999999 9999999999999999999999999999999999999999999997 699999999999
Q ss_pred EeeccCCC
Q 023632 95 VKKAEPKK 102 (279)
Q Consensus 95 V~~a~~~~ 102 (279)
|+.+..++
T Consensus 162 v~~~~~~~ 169 (457)
T TIGR01622 162 VQSSQAEK 169 (457)
T ss_pred Eeecchhh
Confidence 98876543
No 30
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=6.1e-14 Score=116.64 Aligned_cols=78 Identities=17% Similarity=0.424 Sum_probs=69.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
..+++| |.|||.+|.| ++|+++|.||+.|.+|+|... -....||||+|+++.+|+.||..-|+..+++..|+|
T Consensus 4 r~~~~iyvGNLP~diRe---keieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRV 77 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIRE---KEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRV 77 (241)
T ss_pred cccceEEecCCCcchhh---ccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEE
Confidence 356889 9999999999 999999999999999988543 244679999999999999999999999999999999
Q ss_pred eeccC
Q 023632 96 KKAEP 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
+++..
T Consensus 78 Efprg 82 (241)
T KOG0105|consen 78 EFPRG 82 (241)
T ss_pred EeccC
Confidence 99754
No 31
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=3.9e-14 Score=133.90 Aligned_cols=83 Identities=23% Similarity=0.285 Sum_probs=75.8
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
..+| |+||||.|.+ .+|+.+|++||.|.+|.|++.+++.. +|||||+|....+|++||+.+|+++|++++|-|.|
T Consensus 117 k~rLIIRNLPf~~k~---~dLk~vFs~~G~V~Ei~IP~k~dgkl-cGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKK---PDLKNVFSNFGKVVEIVIPRKKDGKL-CGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCc---HHHHHHHhhcceEEEEEcccCCCCCc-cceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 5667 9999999999 99999999999999999998875555 49999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 023632 98 AEPKKPNL 105 (279)
Q Consensus 98 a~~~~~~~ 105 (279)
|.++..-.
T Consensus 193 AV~Kd~ye 200 (678)
T KOG0127|consen 193 AVDKDTYE 200 (678)
T ss_pred eccccccc
Confidence 99876543
No 32
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=5.1e-14 Score=131.75 Aligned_cols=79 Identities=19% Similarity=0.363 Sum_probs=71.8
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCH--HHHHHHHHHcCCCccCCce
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE--QAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~--e~a~~Ai~~lng~~l~g~~ 92 (279)
.....+| |+||+++|++ ++|+++|..||.|++|.|+ ++|+ |+||||+|.+. +++++||+.||+.+|+++.
T Consensus 7 ~~~gMRIYVGNLSydVTE---DDLravFSeFGsVkdVEIp--RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGR---DDLLKIFSPMGTVDAVEFV--RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred CCcceEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEe--cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 3456788 9999999999 9999999999999999999 4466 99999999977 7899999999999999999
Q ss_pred eEEeeccCC
Q 023632 93 VEVKKAEPK 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|.+|++.
T Consensus 80 LKVNKAKP~ 88 (759)
T PLN03213 80 LRLEKAKEH 88 (759)
T ss_pred eEEeeccHH
Confidence 999998754
No 33
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=4.4e-14 Score=111.94 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=78.4
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
..-..| |.++.+++|| ++|.+.|..||+|+.|.|..|+.|+..|+||+|+|++.++|++||..||+.+|.+++|.|
T Consensus 70 VEGwIi~VtgvHeEatE---edi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~V 146 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATE---EDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSV 146 (170)
T ss_pred eeeEEEEEeccCcchhH---HHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeE
Confidence 344567 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 023632 96 KKAEPKKP 103 (279)
Q Consensus 96 ~~a~~~~~ 103 (279)
.|+..+.+
T Consensus 147 Dw~Fv~gp 154 (170)
T KOG0130|consen 147 DWCFVKGP 154 (170)
T ss_pred EEEEecCC
Confidence 99876554
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.4e-14 Score=132.08 Aligned_cols=88 Identities=25% Similarity=0.423 Sum_probs=78.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC-cc--CCce
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL-EL--AGAQ 92 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~-~l--~g~~ 92 (279)
.+.++| |+-|+..+|| +||+++|++||.|++|.|++|. .+.+||||||+|++.|.|..||+.||+. ++ +..+
T Consensus 122 ~~e~KLFvg~lsK~~te---~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTE---NEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred ccchhhhhhhccccccH---HHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 446788 9999999999 9999999999999999999995 7899999999999999999999999984 33 3678
Q ss_pred eEEeeccCCCCCCCCC
Q 023632 93 VEVKKAEPKKPNLPQP 108 (279)
Q Consensus 93 i~V~~a~~~~~~~~~~ 108 (279)
|.|+||++++++..++
T Consensus 198 LVVkFADtqkdk~~~~ 213 (510)
T KOG0144|consen 198 LVVKFADTQKDKDGKR 213 (510)
T ss_pred eEEEecccCCCchHHH
Confidence 9999999998876543
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=4.5e-14 Score=130.22 Aligned_cols=87 Identities=23% Similarity=0.449 Sum_probs=77.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC-ccC--C
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL-ELA--G 90 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~-~l~--g 90 (279)
.|.+..+| |+-||..|+| +||+++|++|+.|.+|.|++||.|+.+++||||+|.+.++|++||.+||++ +|- .
T Consensus 30 ~d~~~vKlfVgqIprt~sE---~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~ 106 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASE---KDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMH 106 (510)
T ss_pred CCchhhhheeccCCccccH---HHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCC
Confidence 34566677 9999999999 999999999999999999999999999999999999999999999999774 444 5
Q ss_pred ceeEEeeccCCCCC
Q 023632 91 AQVEVKKAEPKKPN 104 (279)
Q Consensus 91 ~~i~V~~a~~~~~~ 104 (279)
++|.|++|+.++++
T Consensus 107 ~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 107 HPVQVKYADGERER 120 (510)
T ss_pred cceeecccchhhhc
Confidence 78999999876665
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.49 E-value=1.3e-13 Score=120.52 Aligned_cols=79 Identities=33% Similarity=0.660 Sum_probs=75.8
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
.++| |.|||+++++ ++|+++|.+|+.|..|.|+.|+.++++++||||+|.++++|++||+.+++..|.+++|+|.+
T Consensus 115 ~~~l~v~nL~~~~~~---~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~ 191 (306)
T COG0724 115 NNTLFVGNLPYDVTE---EDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQK 191 (306)
T ss_pred CceEEEeCCCCCCCH---HHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeec
Confidence 4888 9999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 023632 98 AEP 100 (279)
Q Consensus 98 a~~ 100 (279)
+.+
T Consensus 192 ~~~ 194 (306)
T COG0724 192 AQP 194 (306)
T ss_pred ccc
Confidence 653
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=7.4e-14 Score=121.63 Aligned_cols=83 Identities=22% Similarity=0.468 Sum_probs=78.2
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..+.| |.-||.++|+ |||+.+|...|+|++|++++||.|+++-||+||.|.+++||++||..||+..|..+.|+|.
T Consensus 40 skTNLIvNYLPQ~MTq---dE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQ---DELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred ccceeeeeecccccCH---HHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 34456 9999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 023632 97 KAEPKKP 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
+|+|...
T Consensus 117 yARPSs~ 123 (360)
T KOG0145|consen 117 YARPSSD 123 (360)
T ss_pred eccCChh
Confidence 9998654
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=1.2e-13 Score=128.00 Aligned_cols=80 Identities=25% Similarity=0.400 Sum_probs=74.3
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC-CceeE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-g~~i~ 94 (279)
..-+.| |+.||.++.| ++|.-+|++.|+|-+++||+|+.++.+||||||+|.+.++|++||+.||+++|. ++.|.
T Consensus 81 ~~G~EVfvGkIPrD~~E---deLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~ig 157 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFE---DELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLG 157 (506)
T ss_pred CCCceEEecCCCccccc---hhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeE
Confidence 345788 9999999999 999999999999999999999999999999999999999999999999999997 88888
Q ss_pred Eeecc
Q 023632 95 VKKAE 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|+.+.
T Consensus 158 vc~Sv 162 (506)
T KOG0117|consen 158 VCVSV 162 (506)
T ss_pred EEEee
Confidence 87654
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=1.7e-13 Score=119.93 Aligned_cols=87 Identities=22% Similarity=0.457 Sum_probs=78.3
Q ss_pred hhhcCCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 10 TMFINRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 10 ~~~~~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
+...+..+++++| |+||+.-++| ++|++.|+.||+|.+|+|.++ ++||||.|+++|+|.+||.++|+.+|
T Consensus 155 eV~NQssp~NtsVY~G~I~~~lte---~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei 225 (321)
T KOG0148|consen 155 EVYNQSSPDNTSVYVGNIASGLTE---DLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEI 225 (321)
T ss_pred HHhccCCCCCceEEeCCcCccccH---HHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCcee
Confidence 3444567788999 9999999999 999999999999999999988 68999999999999999999999999
Q ss_pred CCceeEEeeccCCCCCC
Q 023632 89 AGAQVEVKKAEPKKPNL 105 (279)
Q Consensus 89 ~g~~i~V~~a~~~~~~~ 105 (279)
.++.|++.+-+......
T Consensus 226 ~G~~VkCsWGKe~~~~~ 242 (321)
T KOG0148|consen 226 GGQLVRCSWGKEGDDGI 242 (321)
T ss_pred CceEEEEeccccCCCCC
Confidence 99999999987765443
No 40
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.8e-13 Score=118.09 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=68.5
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
...+| |.||++.+|| ++|++||+.||+|++|+|++|.+ .++||||+|+++++|+.|| .||+.+|.+++|.|.
T Consensus 4 ~g~TV~V~NLS~~tTE---~dLrefFS~~G~I~~V~I~~D~e---t~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It 76 (243)
T PLN03121 4 GGYTAEVTNLSPKATE---KDVYDFFSHCGAIEHVEIIRSGE---YACTAYVTFKDAYALETAV-LLSGATIVDQRVCIT 76 (243)
T ss_pred CceEEEEecCCCCCCH---HHHHHHHHhcCCeEEEEEecCCC---cceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEE
Confidence 44688 9999999999 99999999999999999999854 4579999999999999999 569999999999998
Q ss_pred eccC
Q 023632 97 KAEP 100 (279)
Q Consensus 97 ~a~~ 100 (279)
.+..
T Consensus 77 ~~~~ 80 (243)
T PLN03121 77 RWGQ 80 (243)
T ss_pred eCcc
Confidence 8653
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.47 E-value=7.1e-14 Score=115.95 Aligned_cols=80 Identities=29% Similarity=0.451 Sum_probs=76.4
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
....+| |.||+..+++ +.|.++|-+.++|++|.|++|+.|.+.++||||+|.++|+|+-||+.||.+.|-+++|+|
T Consensus 7 nqd~tiyvgnld~kvs~---~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv 83 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSE---ELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRV 83 (203)
T ss_pred CCCceEEEecCCHHHHH---HHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEE
Confidence 345778 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 023632 96 KKAE 99 (279)
Q Consensus 96 ~~a~ 99 (279)
.++.
T Consensus 84 ~kas 87 (203)
T KOG0131|consen 84 NKAS 87 (203)
T ss_pred Eecc
Confidence 9987
No 42
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.46 E-value=5.2e-13 Score=94.18 Aligned_cols=73 Identities=33% Similarity=0.622 Sum_probs=67.7
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
+| |.+||+++++ ++|+++|+.++.|+.+.++.++.+ +++++|||+|.+.++|++|++.++...+++++|+|++
T Consensus 1 ~i~i~~l~~~~~~---~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTE---EDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCH---HHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 46 9999999999 999999999999999999988765 7789999999999999999999999999999999864
No 43
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=1.4e-14 Score=120.01 Aligned_cols=80 Identities=20% Similarity=0.424 Sum_probs=75.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.++..| |++||+++|| .||..+|++||+|++|.+++|+.|++++||||+.|++..+...||..||++.|.+|.|+|
T Consensus 33 kdsA~Iyiggl~~~LtE---gDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirV 109 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTE---GDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRV 109 (219)
T ss_pred ccceEEEECCCcccccC---CcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEe
Confidence 345678 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 023632 96 KKAE 99 (279)
Q Consensus 96 ~~a~ 99 (279)
....
T Consensus 110 DHv~ 113 (219)
T KOG0126|consen 110 DHVS 113 (219)
T ss_pred eecc
Confidence 8653
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=2.1e-13 Score=129.26 Aligned_cols=82 Identities=23% Similarity=0.413 Sum_probs=78.2
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
+.| |+|||++++| ++|.++|+..+.|.+++++.|++|+++|+|+||+|.++++|++||+.||+.++.+++|+|.++
T Consensus 19 ~~v~vgnip~~~se---~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~ 95 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSE---EQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYA 95 (435)
T ss_pred cceEecCCCCcccH---HHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecc
Confidence 778 9999999999 999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCC
Q 023632 99 EPKKPN 104 (279)
Q Consensus 99 ~~~~~~ 104 (279)
...+.+
T Consensus 96 ~~~~~~ 101 (435)
T KOG0108|consen 96 SNRKNA 101 (435)
T ss_pred cccchh
Confidence 765543
No 45
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=4e-13 Score=101.94 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=71.5
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
...++.| |.|||+++|. +++.++|.+||.|..|+|-..++| +|.|||+|++..+|++|++.|++..++++.|.
T Consensus 15 pevnriLyirNLp~~ITs---eemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 15 PEVNRILYIRNLPFKITS---EEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred hhhheeEEEecCCccccH---HHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 3445666 9999999999 999999999999999999876654 79999999999999999999999999999999
Q ss_pred EeeccCC
Q 023632 95 VKKAEPK 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|-.-.+.
T Consensus 89 vlyyq~~ 95 (124)
T KOG0114|consen 89 VLYYQPE 95 (124)
T ss_pred EEecCHH
Confidence 9876654
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.43 E-value=7e-13 Score=128.81 Aligned_cols=78 Identities=15% Similarity=0.238 Sum_probs=71.7
Q ss_pred CCCcee-eeCCCC-CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 17 TTTQKM-TGLSLT-PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~-~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
...++| |.|||+ ++|+ ++|+++|++||.|++|+|++++ ++||||+|+++++|++||+.||+++|.+++|+
T Consensus 273 ~~~~~l~v~nL~~~~vt~---~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~ 344 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNC---DRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLR 344 (481)
T ss_pred CCCCEEEEeCCCCCCCCH---HHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEE
Confidence 456788 999998 6999 9999999999999999999874 68999999999999999999999999999999
Q ss_pred EeeccCCC
Q 023632 95 VKKAEPKK 102 (279)
Q Consensus 95 V~~a~~~~ 102 (279)
|++++.+.
T Consensus 345 v~~s~~~~ 352 (481)
T TIGR01649 345 VCPSKQQN 352 (481)
T ss_pred EEEccccc
Confidence 99987654
No 47
>smart00361 RRM_1 RNA recognition motif.
Probab=99.43 E-value=6.7e-13 Score=95.49 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=55.2
Q ss_pred HHHHHHHh----cCCCeEEEE-EeecCCC--CCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 36 DEFKDFFM----QFGDVQEHQ-IMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 36 ~~L~~~F~----~~G~V~~v~-i~~d~~t--g~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
++|+++|+ +||+|.+|. |+.++.+ +++++|+||+|+++++|++||+.||+..|++++|+++
T Consensus 3 ~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 3 EDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred hhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 67778887 999999995 7777766 8999999999999999999999999999999999873
No 48
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.42 E-value=2.4e-13 Score=123.84 Aligned_cols=90 Identities=43% Similarity=0.667 Sum_probs=82.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
..+++| |+.||.+++| ++|+++|++|+.|.++.|+.|+++.++++|+||+|++++++++++.+ .-++|++++|+|
T Consensus 95 ~~tkkiFvGG~~~~~~e---~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vev 170 (311)
T KOG4205|consen 95 LRTKKIFVGGLPPDTTE---EDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEV 170 (311)
T ss_pred cceeEEEecCcCCCCch---HHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeE
Confidence 346789 9999999999 99999999999999999999999999999999999999999999988 789999999999
Q ss_pred eeccCCCCCCCCCCC
Q 023632 96 KKAEPKKPNLPQPSY 110 (279)
Q Consensus 96 ~~a~~~~~~~~~~~~ 110 (279)
++|.|+....+....
T Consensus 171 krA~pk~~~~~~~~~ 185 (311)
T KOG4205|consen 171 KRAIPKEVMQSTKSS 185 (311)
T ss_pred eeccchhhccccccc
Confidence 999999887765543
No 49
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.40 E-value=1.2e-12 Score=89.85 Aligned_cols=56 Identities=25% Similarity=0.559 Sum_probs=51.1
Q ss_pred HHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 38 FKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 38 L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
|+++|++||+|++|.|..++ +++|||+|++.++|++|++.||+..|++++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997664 579999999999999999999999999999999985
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=1.5e-12 Score=126.43 Aligned_cols=75 Identities=11% Similarity=0.201 Sum_probs=68.3
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc--CCCccCCceeEE
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG--NKLELAGAQVEV 95 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l--ng~~l~g~~i~V 95 (279)
+++| |+|||++++| ++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.| +.+.|.+++|.|
T Consensus 2 s~vv~V~nLp~~~te---~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v 72 (481)
T TIGR01649 2 SPVVHVRNLPQDVVE---ADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFF 72 (481)
T ss_pred ccEEEEcCCCCCCCH---HHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEE
Confidence 5788 9999999999 999999999999999999864 579999999999999999974 778999999999
Q ss_pred eeccCCC
Q 023632 96 KKAEPKK 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
+++..++
T Consensus 73 ~~s~~~~ 79 (481)
T TIGR01649 73 NYSTSQE 79 (481)
T ss_pred EecCCcc
Confidence 9987653
No 51
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.38 E-value=1.1e-12 Score=121.35 Aligned_cols=78 Identities=22% Similarity=0.351 Sum_probs=71.4
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHH-hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
.+.+ |.|||+++.| ++||++| ++-++|+.|+|+.|. ++|+|+||.|||+++|.++||++.||.++|++++|+|+
T Consensus 44 ~R~vfItNIpyd~rW---qdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRW---QDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred cceEEEecCcchhhh---HhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3447 9999999999 9999999 578999999999995 89999999999999999999999999999999999998
Q ss_pred eccC
Q 023632 97 KAEP 100 (279)
Q Consensus 97 ~a~~ 100 (279)
....
T Consensus 120 Ed~d 123 (608)
T KOG4212|consen 120 EDHD 123 (608)
T ss_pred ccCc
Confidence 7543
No 52
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.36 E-value=1.1e-12 Score=116.00 Aligned_cols=73 Identities=26% Similarity=0.520 Sum_probs=68.6
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
.+| |+|||.++++ .+|+.+|++|++|++|+|+++ |+||..++++.++.||..||+.+|++..|+|+.+
T Consensus 3 ~KLFIGNLp~~~~~---~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaS 71 (346)
T KOG0109|consen 3 VKLFIGNLPREATE---QELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEAS 71 (346)
T ss_pred cchhccCCCcccch---HHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEec
Confidence 456 9999999999 999999999999999999977 9999999999999999999999999999999999
Q ss_pred cCCCC
Q 023632 99 EPKKP 103 (279)
Q Consensus 99 ~~~~~ 103 (279)
+.|.+
T Consensus 72 ksKsk 76 (346)
T KOG0109|consen 72 KSKSK 76 (346)
T ss_pred cccCC
Confidence 88733
No 53
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=9.2e-13 Score=115.23 Aligned_cols=88 Identities=19% Similarity=0.383 Sum_probs=82.6
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+-++-++| |-.||.+..+ .||..+|..||.|++.+|..|+.|..+|+|+||.|+++.+++.||..||++.|.-++|
T Consensus 281 eGPeGCNlFIYHLPQEFgD---aEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRL 357 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGD---AELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRL 357 (371)
T ss_pred cCCCcceEEEEeCchhhcc---HHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhh
Confidence 45677899 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|...+||...+
T Consensus 358 KVQLKRPkdanR 369 (371)
T KOG0146|consen 358 KVQLKRPKDANR 369 (371)
T ss_pred hhhhcCccccCC
Confidence 999988876544
No 54
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-12 Score=118.39 Aligned_cols=83 Identities=16% Similarity=0.346 Sum_probs=78.0
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
.++.++| |..|.+.+|+ ++|+-||+.||+|+.|.|++|+.|+.+-.||||+|++.+++++|.-+|++..|+++.|.
T Consensus 236 ~PPeNVLFVCKLNPVTtD---eDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTD---EDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred CCCcceEEEEecCCcccc---cchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 4566788 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCC
Q 023632 95 VKKAEPK 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|.++++-
T Consensus 313 VDFSQSV 319 (479)
T KOG0415|consen 313 VDFSQSV 319 (479)
T ss_pred eehhhhh
Confidence 9987653
No 55
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=2.2e-12 Score=122.22 Aligned_cols=83 Identities=27% Similarity=0.430 Sum_probs=75.8
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc-----CC-CccCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-----NK-LELAG 90 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l-----ng-~~l~g 90 (279)
..++| |+|||+++|| ++|+++|++||+|+.+.|+.++.|++++|+|||.|.+.++|++||+.. .+ ..|++
T Consensus 291 ~~~tVFvRNL~fD~tE---Eel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~G 367 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTE---EELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDG 367 (678)
T ss_pred ccceEEEecCCccccH---HHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEec
Confidence 34788 9999999999 999999999999999999999999999999999999999999999986 22 67889
Q ss_pred ceeEEeeccCCCC
Q 023632 91 AQVEVKKAEPKKP 103 (279)
Q Consensus 91 ~~i~V~~a~~~~~ 103 (279)
+.|+|..|.++++
T Consensus 368 R~Lkv~~Av~Rke 380 (678)
T KOG0127|consen 368 RLLKVTLAVTRKE 380 (678)
T ss_pred cEEeeeeccchHH
Confidence 9999999987654
No 56
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.30 E-value=2.4e-12 Score=117.33 Aligned_cols=85 Identities=39% Similarity=0.635 Sum_probs=78.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+.++| |.+|+|+++| +.|++.|.+|++|.+|.|++|+.|+++++|.||+|++++.+.++|.. ..++|+++.|+++
T Consensus 5 ~~~KlfiGgisw~tte---e~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTE---ESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPK 80 (311)
T ss_pred CCcceeecCcCccccH---HHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccce
Confidence 67888 9999999999 99999999999999999999999999999999999999999999888 5789999999999
Q ss_pred eccCCCCCCC
Q 023632 97 KAEPKKPNLP 106 (279)
Q Consensus 97 ~a~~~~~~~~ 106 (279)
.|.++.....
T Consensus 81 ~av~r~~~~~ 90 (311)
T KOG4205|consen 81 RAVSREDQTK 90 (311)
T ss_pred eccCcccccc
Confidence 9998776543
No 57
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.28 E-value=1.4e-11 Score=107.48 Aligned_cols=79 Identities=23% Similarity=0.316 Sum_probs=75.0
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
..| |-||.++++| ..|.++|.+||.|..|+|++|..|.++|||+||++.+-++|..||..||+..|.++.|.|.+.
T Consensus 279 ~ciFvYNLspd~de---~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFK 355 (360)
T KOG0145|consen 279 WCIFVYNLSPDADE---SILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK 355 (360)
T ss_pred eEEEEEecCCCchH---hHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEe
Confidence 456 9999999999 999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCC
Q 023632 99 EPK 101 (279)
Q Consensus 99 ~~~ 101 (279)
..+
T Consensus 356 tnk 358 (360)
T KOG0145|consen 356 TNK 358 (360)
T ss_pred cCC
Confidence 654
No 58
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.26 E-value=4.4e-11 Score=112.98 Aligned_cols=79 Identities=24% Similarity=0.440 Sum_probs=68.4
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
..| |.|||.++++ ++|+++|++||+|++..|.......+..+|+||+|++.++++.||++ +...|++++|.|+..
T Consensus 289 ~~i~V~nlP~da~~---~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek 364 (419)
T KOG0116|consen 289 LGIFVKNLPPDATP---AELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEK 364 (419)
T ss_pred cceEeecCCCCCCH---HHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEec
Confidence 448 9999999999 99999999999999988876543344459999999999999999999 689999999999987
Q ss_pred cCCC
Q 023632 99 EPKK 102 (279)
Q Consensus 99 ~~~~ 102 (279)
++..
T Consensus 365 ~~~~ 368 (419)
T KOG0116|consen 365 RPGF 368 (419)
T ss_pred cccc
Confidence 6543
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=6.9e-12 Score=104.22 Aligned_cols=85 Identities=28% Similarity=0.379 Sum_probs=76.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~-v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....+| |+||.++++| ..|.++|+.||+|.. -+|++|..|+.+++|+||.|++.|.+++||+.+|++.++.++|+
T Consensus 94 ~vganlfvgNLd~~vDe---~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~it 170 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDE---KLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPIT 170 (203)
T ss_pred cccccccccccCcchhH---HHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceE
Confidence 345678 9999999999 999999999999865 48999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 023632 95 VKKAEPKKPN 104 (279)
Q Consensus 95 V~~a~~~~~~ 104 (279)
|..+..+...
T Consensus 171 v~ya~k~~~k 180 (203)
T KOG0131|consen 171 VSYAFKKDTK 180 (203)
T ss_pred EEEEEecCCC
Confidence 9998765443
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.25 E-value=1e-11 Score=109.78 Aligned_cols=79 Identities=20% Similarity=0.423 Sum_probs=72.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+...+++| |.||.+.|+. +||++.|++|++|.+|+|++| ++||.|+-.++|..||+.||+.+|.++++
T Consensus 74 Ksk~stkl~vgNis~tctn---~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTN---QELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred cCCCccccccCCCCccccC---HHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccccccee
Confidence 45567889 9999999999 999999999999999999977 99999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|+.+.++...
T Consensus 143 ~vq~stsrlrt 153 (346)
T KOG0109|consen 143 HVQLSTSRLRT 153 (346)
T ss_pred eeeeecccccc
Confidence 99998776543
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.24 E-value=1.1e-11 Score=117.72 Aligned_cols=80 Identities=33% Similarity=0.547 Sum_probs=75.0
Q ss_pred e-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccC
Q 023632 22 M-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100 (279)
Q Consensus 22 l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~ 100 (279)
| |+||.++++| ++|+.+|+.|+.|+.|.+++|.+|+++|+|+||+|.+.++|.+|+++||+.+|.++.|+|.....
T Consensus 281 l~vgnLHfNite---~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 281 LYVGNLHFNITE---DMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhcccccCchH---HHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 7 9999999999 99999999999999999999999999999999999999999999999999999999999987665
Q ss_pred CCCC
Q 023632 101 KKPN 104 (279)
Q Consensus 101 ~~~~ 104 (279)
+...
T Consensus 358 r~~~ 361 (549)
T KOG0147|consen 358 RVDT 361 (549)
T ss_pred eccc
Confidence 4433
No 62
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.21 E-value=9.7e-12 Score=112.92 Aligned_cols=76 Identities=22% Similarity=0.419 Sum_probs=73.4
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
-++| |+.|.+++.| +.|+..|..||+|++|.+.+|+.|.++|+||||||+-+|.|+.|++.||+.+|.+|.|+|..
T Consensus 113 McRvYVGSIsfEl~E---DtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 113 MCRVYVGSISFELRE---DTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred hHheeeeeeEEEech---HHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 4788 9999999999 99999999999999999999999999999999999999999999999999999999999973
No 63
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5.3e-11 Score=111.65 Aligned_cols=81 Identities=21% Similarity=0.382 Sum_probs=74.1
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
..| |.||+++++. ++|.++|+.||+|++|+|++|++ + +++| ||+|+++++|++||++||+..+.+++|.|...
T Consensus 77 ~~~~i~nl~~~~~~---~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 77 SLVFIKNLDESIDN---KSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred ceeeecCCCcccCc---HHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 338 9999999999 99999999999999999999964 3 9999 99999999999999999999999999999988
Q ss_pred cCCCCCCC
Q 023632 99 EPKKPNLP 106 (279)
Q Consensus 99 ~~~~~~~~ 106 (279)
..++++..
T Consensus 151 ~~~~er~~ 158 (369)
T KOG0123|consen 151 ERKEEREA 158 (369)
T ss_pred cchhhhcc
Confidence 87766553
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=5.4e-11 Score=104.26 Aligned_cols=87 Identities=21% Similarity=0.410 Sum_probs=76.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC---C
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---G 90 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~---g 90 (279)
+.-+.++| |+-|...-+| ||++.+|..||+|++|.+++.. .+.+||||||.|.+..+|+.||..||+.... .
T Consensus 15 rg~~drklfvgml~kqq~e---~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGAS 90 (371)
T KOG0146|consen 15 RGGDDRKLFVGMLNKQQSE---DDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGAS 90 (371)
T ss_pred CCccchhhhhhhhcccccH---HHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCc
Confidence 34467888 9999999999 9999999999999999999886 6889999999999999999999999985443 5
Q ss_pred ceeEEeeccCCCCCC
Q 023632 91 AQVEVKKAEPKKPNL 105 (279)
Q Consensus 91 ~~i~V~~a~~~~~~~ 105 (279)
..|.|++|+..+++.
T Consensus 91 SSLVVK~ADTdkER~ 105 (371)
T KOG0146|consen 91 SSLVVKFADTDKERT 105 (371)
T ss_pred cceEEEeccchHHHH
Confidence 679999999877754
No 65
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.11 E-value=2.1e-10 Score=111.86 Aligned_cols=84 Identities=14% Similarity=0.172 Sum_probs=68.2
Q ss_pred CCCcee-eeCCCCC--C-C----cccHHHHHHHHhcCCCeEEEEEeecC---CCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 17 TTTQKM-TGLSLTP--V-T----EPALDEFKDFFMQFGDVQEHQIMRDH---STSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 17 ~~~~~l-V~nLp~~--~-t----e~~~~~L~~~F~~~G~V~~v~i~~d~---~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
..+++| |.||... + + ++.+++|+++|++||.|++|+|+++. .+...+|++||+|+++++|++||+.||+
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 356777 8888532 1 1 11236899999999999999998753 3456689999999999999999999999
Q ss_pred CccCCceeEEeeccC
Q 023632 86 LELAGAQVEVKKAEP 100 (279)
Q Consensus 86 ~~l~g~~i~V~~a~~ 100 (279)
.+|++++|.|.+...
T Consensus 487 r~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 487 RKFNDRVVVAAFYGE 501 (509)
T ss_pred CEECCeEEEEEEeCH
Confidence 999999999998754
No 66
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.11 E-value=1.5e-10 Score=110.33 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=75.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |..|...+.. .+|+.||++||+|+-.+|+++..+--.++|+||++.+.++|.+||+.||..+|.++.|.|
T Consensus 403 ~~gRNlWVSGLSstTRA---tDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISV 479 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRA---TDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISV 479 (940)
T ss_pred ccccceeeeccccchhh---hHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeee
Confidence 345788 9999999988 999999999999999999999888888999999999999999999999999999999999
Q ss_pred eeccC
Q 023632 96 KKAEP 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
++++.
T Consensus 480 EkaKN 484 (940)
T KOG4661|consen 480 EKAKN 484 (940)
T ss_pred eeccc
Confidence 98764
No 67
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.10 E-value=2.9e-10 Score=96.39 Aligned_cols=81 Identities=22% Similarity=0.367 Sum_probs=72.6
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~-G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
....+ |..||.-+.| .+|..+|.+| +.|..+++-+++.|+.+|+||||+|+++|.|+-|.+.||+..|.++.|+|
T Consensus 48 ~~g~~~~~~~p~g~~e---~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFE---TEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred CccceeecccccchhH---HHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 33445 8899999999 9999999888 77888888899999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 023632 96 KKAEPK 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
.+-.|.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 876654
No 68
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.09 E-value=2.6e-10 Score=107.26 Aligned_cols=81 Identities=23% Similarity=0.332 Sum_probs=69.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+......| +..|||++|+ +||.+||+.+ .|++++|+++ ++++.+-|||||+++|++++||++ |..++..+-|
T Consensus 6 e~~~~~~vr~rGLPwsat~---~ei~~Ff~~~-~I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYI 78 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATE---KEILDFFSNC-GIENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYI 78 (510)
T ss_pred CCCcceEEEecCCCccccH---HHHHHHHhcC-ceeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceE
Confidence 34455677 9999999999 9999999998 5777666554 899999999999999999999999 8889999999
Q ss_pred EEeeccCCC
Q 023632 94 EVKKAEPKK 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|..+..++
T Consensus 79 EVf~~~~~e 87 (510)
T KOG4211|consen 79 EVFTAGGAE 87 (510)
T ss_pred EEEccCCcc
Confidence 998885543
No 69
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.08 E-value=3.8e-10 Score=96.90 Aligned_cols=80 Identities=20% Similarity=0.361 Sum_probs=71.0
Q ss_pred Ccee-eeCCCCCCCcccHHHHHH----HHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKD----FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~----~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
..+| |.||++.+.. ++|++ +|++||+|.+|.+.+ |.+.||-|||+|++.+.|..|+.+|++..+-++++
T Consensus 9 n~TlYInnLnekI~~---~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKK---DELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred CceEeehhccccccH---HHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 3488 9999999999 66666 999999999997763 67889999999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|++|+.+...
T Consensus 83 riqyA~s~sdi 93 (221)
T KOG4206|consen 83 RIQYAKSDSDI 93 (221)
T ss_pred heecccCccch
Confidence 99999876543
No 70
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.06 E-value=7.5e-10 Score=97.56 Aligned_cols=84 Identities=19% Similarity=0.356 Sum_probs=75.7
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
+....+| |.|||..|++ +||+++|++|++++.+.|..|+ ++++.++|-|+|+..++|++||+.+|++.|+++.|+
T Consensus 80 ~~~~~~v~v~NL~~~V~~---~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk 155 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVID---ADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMK 155 (243)
T ss_pred CCCcceeeeecCCcCcch---HHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceee
Confidence 3444677 9999999999 9999999999999999999986 899999999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|+...+...
T Consensus 156 ~~~i~~~~~ 164 (243)
T KOG0533|consen 156 IEIISSPSQ 164 (243)
T ss_pred eEEecCccc
Confidence 988766543
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.05 E-value=3e-10 Score=105.42 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=67.8
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..+.++| |+|||+++|| +.|++-|..|+.|+.++|+. .+++++ .|.|.++++|+.|+..||+..|+++.|+
T Consensus 533 arKa~qIiirNlP~dfTW---qmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~ 604 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTW---QMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIK 604 (608)
T ss_pred cccccEEEEecCCccccH---HHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceee
Confidence 4566788 9999999999 99999999999999999953 567777 8999999999999999999999999999
Q ss_pred Eeec
Q 023632 95 VKKA 98 (279)
Q Consensus 95 V~~a 98 (279)
|.++
T Consensus 605 V~y~ 608 (608)
T KOG4212|consen 605 VTYF 608 (608)
T ss_pred eeeC
Confidence 9763
No 72
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.04 E-value=5e-10 Score=101.31 Aligned_cols=79 Identities=29% Similarity=0.551 Sum_probs=70.3
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc-CCCccCCc
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGA 91 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l-ng~~l~g~ 91 (279)
+++...++| |.+|...++| .+|+++|.+||+|+.|.|+.. +++|||+|.+.++|++|.+++ |...|+++
T Consensus 223 PeD~~I~tLyIg~l~d~v~e---~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 223 PEDTSIKTLYIGGLNDEVLE---QDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred CcccceeEEEecccccchhH---HHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 356667888 9999999999 999999999999999999866 359999999999999999874 77889999
Q ss_pred eeEEeeccCC
Q 023632 92 QVEVKKAEPK 101 (279)
Q Consensus 92 ~i~V~~a~~~ 101 (279)
+|+|.|..++
T Consensus 294 Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 294 RLKIKWGRPK 303 (377)
T ss_pred EEEEEeCCCc
Confidence 9999999883
No 73
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.03 E-value=3.7e-10 Score=102.80 Aligned_cols=86 Identities=21% Similarity=0.413 Sum_probs=78.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+..+..+| |..+.++++| +||+.+|+.||+|+.|++.+++.+..+|||+||||.+..+.+.||..||-+.|.++.|
T Consensus 206 eAk~fnRiYVaSvHpDLSe---~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 206 EAKKFNRIYVASVHPDLSE---TDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHHhhheEEeeecCCCccH---HHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 33456788 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 023632 94 EVKKAEPKKP 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|-++..+..
T Consensus 283 RVGk~vTPP~ 292 (544)
T KOG0124|consen 283 RVGKCVTPPD 292 (544)
T ss_pred ecccccCCCc
Confidence 9988765443
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.9e-10 Score=112.03 Aligned_cols=82 Identities=20% Similarity=0.347 Sum_probs=75.6
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||+..+. .+|+++|..||.|++|+|+.......++|||||+|.++++|.+|+++|....|-++.|.++
T Consensus 612 ~~tKIlVRNipFeAt~---rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATK---REVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred ccceeeeeccchHHHH---HHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 34677 9999999999 9999999999999999999886677889999999999999999999999999999999999
Q ss_pred eccCCC
Q 023632 97 KAEPKK 102 (279)
Q Consensus 97 ~a~~~~ 102 (279)
||+...
T Consensus 689 wA~~d~ 694 (725)
T KOG0110|consen 689 WAKSDN 694 (725)
T ss_pred hhccch
Confidence 998654
No 75
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.00 E-value=7.1e-10 Score=108.97 Aligned_cols=79 Identities=24% Similarity=0.422 Sum_probs=71.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
..+++| |+.|+.+|+| .||+.+|+.||+|++|.|+-. ++||||++.+.++|++||.+|+...|..+.|+|
T Consensus 419 V~SrTLwvG~i~k~v~e---~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki 489 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTE---QDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKI 489 (894)
T ss_pred EeeeeeeeccccchhhH---HHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEE
Confidence 345789 9999999999 999999999999999988755 789999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 023632 96 KKAEPKKPN 104 (279)
Q Consensus 96 ~~a~~~~~~ 104 (279)
.||..+-.+
T Consensus 490 ~Wa~g~G~k 498 (894)
T KOG0132|consen 490 AWAVGKGPK 498 (894)
T ss_pred eeeccCCcc
Confidence 999876543
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.4e-09 Score=106.20 Aligned_cols=75 Identities=24% Similarity=0.369 Sum_probs=68.7
Q ss_pred e-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 22 M-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTS---RSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 22 l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg---~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
| |.||++++|. ++|+.+|.+.+.|+.|.|.+.++.. .+.||+||+|.++++|++|++.|+++.|+++.|+|++
T Consensus 518 lfvkNlnf~Tt~---e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 518 LFVKNLNFDTTL---EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred hhhhcCCcccch---hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 8 9999999999 9999999999999999988766432 2459999999999999999999999999999999999
Q ss_pred cc
Q 023632 98 AE 99 (279)
Q Consensus 98 a~ 99 (279)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 88
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.94 E-value=2.3e-09 Score=94.38 Aligned_cols=84 Identities=17% Similarity=0.319 Sum_probs=77.7
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+.+.+.+ |+|+.+.+|. ++|+.+|+.|+.|..|.|++|+.++++|+|+||+|++.+.+++||+ ||..+|.++.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~---~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~ 171 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTL---TKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPA 171 (231)
T ss_pred hhccCCceEEEecccccccc---chhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccccc
Confidence 345677888 9999999999 8899999999999999999999999999999999999999999999 7999999999
Q ss_pred eEEeeccCC
Q 023632 93 VEVKKAEPK 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|...+..
T Consensus 172 i~vt~~r~~ 180 (231)
T KOG4209|consen 172 IEVTLKRTN 180 (231)
T ss_pred ceeeeeeee
Confidence 999887665
No 78
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.90 E-value=3.6e-09 Score=96.33 Aligned_cols=85 Identities=19% Similarity=0.317 Sum_probs=77.4
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~--------~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
.....+| |-+||..+++ ++|.++|.+++.|+ +|+|.+|++|.++|+-|.|+|+|..+|+.||+.++.+
T Consensus 63 ~s~~~ti~v~g~~d~~~~---~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCE---NDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccceeeccCccchH---HHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 4455677 9999999999 99999999999985 4788899999999999999999999999999999999
Q ss_pred ccCCceeEEeeccCCCC
Q 023632 87 ELAGAQVEVKKAEPKKP 103 (279)
Q Consensus 87 ~l~g~~i~V~~a~~~~~ 103 (279)
.|.+.+|+|.+|+.+..
T Consensus 140 df~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRTG 156 (351)
T ss_pred cccCCCchhhhhhhccC
Confidence 99999999999987654
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.88 E-value=9.6e-09 Score=88.19 Aligned_cols=86 Identities=13% Similarity=0.193 Sum_probs=69.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC---Cc
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---GA 91 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~-~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~---g~ 91 (279)
...++| |.+||.+|.. .||..+|..|--.+.+.|. +++....++-++||+|.+..+|++|+++||++.|+ ..
T Consensus 32 ~~VRTLFVSGLP~DvKp---REiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKP---REIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred cccceeeeccCCcccCH---HHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 346888 9999999999 9999999999766665543 34444455689999999999999999999999887 67
Q ss_pred eeEEeeccCCCCCC
Q 023632 92 QVEVKKAEPKKPNL 105 (279)
Q Consensus 92 ~i~V~~a~~~~~~~ 105 (279)
.|+|++|++..++.
T Consensus 109 tLhiElAKSNtK~k 122 (284)
T KOG1457|consen 109 TLHIELAKSNTKRK 122 (284)
T ss_pred eeEeeehhcCcccc
Confidence 89999888654443
No 80
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.86 E-value=1.2e-09 Score=93.30 Aligned_cols=78 Identities=17% Similarity=0.233 Sum_probs=69.6
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
.+..++| |.||...|+| +.|.|+|-+-|+|.+|.|+.+++ .+.| ||||+|+++.++.-||+.+|+..|.+++|.
T Consensus 6 ae~drtl~v~n~~~~v~e---elL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q 80 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSE---ELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQ 80 (267)
T ss_pred cchhhHHHHHhhhhhhhH---HHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhh
Confidence 3456788 9999999999 99999999999999999998874 4455 999999999999999999999999999888
Q ss_pred Eeec
Q 023632 95 VKKA 98 (279)
Q Consensus 95 V~~a 98 (279)
|++-
T Consensus 81 ~~~r 84 (267)
T KOG4454|consen 81 RTLR 84 (267)
T ss_pred cccc
Confidence 8754
No 81
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=5.2e-09 Score=98.30 Aligned_cols=86 Identities=19% Similarity=0.412 Sum_probs=78.2
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
......| |.||+..+++ +.|+++|+.+++|..++|+.+. .+++++|+||+|++.++|.+|+..+|+..|..+.|.
T Consensus 267 ~~~~~nl~vknld~~~~~---e~L~~~f~~~GeI~s~kv~~~~-~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~ 342 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSD---EKLRKIFSSFGEITSAKVMVDE-NGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLY 342 (369)
T ss_pred cccccccccccCccccch---hHHHHHHhcccceeeEEEEecc-CCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchh
Confidence 5566788 9999999999 9999999999999999999985 789999999999999999999999999999999999
Q ss_pred EeeccCCCCCC
Q 023632 95 VKKAEPKKPNL 105 (279)
Q Consensus 95 V~~a~~~~~~~ 105 (279)
|.+++.+..+.
T Consensus 343 vav~qr~~~r~ 353 (369)
T KOG0123|consen 343 VAVAQRKEDRR 353 (369)
T ss_pred hhHHhhhccch
Confidence 99988555443
No 82
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.84 E-value=8e-09 Score=93.58 Aligned_cols=81 Identities=17% Similarity=0.273 Sum_probs=72.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~--------~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
..++.| |.+||.++|. +++.++|++||.|. .|+|.++. .++.||=|.|+|...|+++.||+.|+..+
T Consensus 132 ~~Nt~VYVsgLP~DiT~---dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITV---DEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred ccCceEEecCCCCcccH---HHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCccc
Confidence 345668 9999999999 99999999999885 47888886 59999999999999999999999999999
Q ss_pred cCCceeEEeeccCC
Q 023632 88 LAGAQVEVKKAEPK 101 (279)
Q Consensus 88 l~g~~i~V~~a~~~ 101 (279)
|.+++|+|+.|+-+
T Consensus 208 ~rg~~~rVerAkfq 221 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQ 221 (382)
T ss_pred ccCcEEEEehhhhh
Confidence 99999999998743
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.77 E-value=4.6e-08 Score=74.61 Aligned_cols=79 Identities=14% Similarity=0.140 Sum_probs=66.9
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcC--CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC----Cce
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA----GAQ 92 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~--G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~----g~~ 92 (279)
++| |+|||...|. ++|.+++... ++..-+.++.|..+..+.|||||.|.++++|.+-.+.++++.+. .+.
T Consensus 2 TTvMirNIPn~~t~---~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kv 78 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQ---EMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKV 78 (97)
T ss_pred eeEEEecCCCCCCH---HHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcE
Confidence 578 9999999999 7777777543 56677889999999999999999999999999999999998775 566
Q ss_pred eEEeeccCC
Q 023632 93 VEVKKAEPK 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
++|.+|+-+
T Consensus 79 c~i~yAriQ 87 (97)
T PF04059_consen 79 CEISYARIQ 87 (97)
T ss_pred EEEehhHhh
Confidence 788887643
No 84
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.73 E-value=6.9e-09 Score=90.55 Aligned_cols=86 Identities=21% Similarity=0.374 Sum_probs=78.3
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+.+.+..+| .+.|..++++ +.|...|.+|-.....++++|+.|+++++|.||.|.+.+++..|+++||++.++.+.
T Consensus 185 ew~~~DfRIfcgdlgNevnd---~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrp 261 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVND---DVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRP 261 (290)
T ss_pred cCccccceeecccccccccH---HHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccch
Confidence 445666788 9999999999 999999999998889999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+++....++
T Consensus 262 iklRkS~wke 271 (290)
T KOG0226|consen 262 IKLRKSEWKE 271 (290)
T ss_pred hHhhhhhHHh
Confidence 9998776554
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=9.3e-09 Score=98.19 Aligned_cols=72 Identities=19% Similarity=0.340 Sum_probs=65.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
++..+.+| |-|||..|++ ++|+++|+.||+|++|+... ..++.+||+|-|..+|++|+++||..+|.++.|
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn---~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~ 142 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSN---DTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGKRI 142 (549)
T ss_pred ccCccceEEEEecCCcCCH---HHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhh
Confidence 46678889 9999999999 99999999999999976543 447899999999999999999999999999988
Q ss_pred E
Q 023632 94 E 94 (279)
Q Consensus 94 ~ 94 (279)
+
T Consensus 143 k 143 (549)
T KOG4660|consen 143 K 143 (549)
T ss_pred c
Confidence 7
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.69 E-value=3.2e-08 Score=93.33 Aligned_cols=77 Identities=17% Similarity=0.295 Sum_probs=65.2
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~-v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...+| ++.||+.||| +||.+||+-.-.|.+ |.++.|+ ..++.+.|||.|++.|+|++||.. |...|..+-|+|
T Consensus 102 ~d~vVRLRGLPfscte---~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEv 176 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTE---EDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEV 176 (510)
T ss_pred CCceEEecCCCccCcH---HHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEe
Confidence 45678 9999999999 999999998755544 4455564 567999999999999999999999 888999999999
Q ss_pred eecc
Q 023632 96 KKAE 99 (279)
Q Consensus 96 ~~a~ 99 (279)
.++.
T Consensus 177 F~Ss 180 (510)
T KOG4211|consen 177 FRSS 180 (510)
T ss_pred ehhH
Confidence 8765
No 87
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=1.3e-08 Score=87.98 Aligned_cols=71 Identities=25% Similarity=0.513 Sum_probs=64.6
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
.+| |++||+.+.+ .+|++||..|++|.+|.|. .+|+||+|+++.+|+.||..||.++|.+.+|.|+++
T Consensus 2 ~rv~vg~~~~~~~~---~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~ 70 (216)
T KOG0106|consen 2 PRVYIGRLPYRARE---RDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHA 70 (216)
T ss_pred CceeecccCCccch---hHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecc
Confidence 357 9999999999 9999999999999999875 358999999999999999999999999998999888
Q ss_pred cCC
Q 023632 99 EPK 101 (279)
Q Consensus 99 ~~~ 101 (279)
+.+
T Consensus 71 r~~ 73 (216)
T KOG0106|consen 71 RGK 73 (216)
T ss_pred ccc
Confidence 754
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.52 E-value=1.8e-07 Score=91.50 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=74.1
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~---tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
++.+++| |.||++.|+| +.|...|..||+|..|+|+..+. ..+.+-|+||.|.+..+|++|++.|+++.|...
T Consensus 171 DP~TTNlyv~Nlnpsv~E---~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDE---NFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCcccceeeecCCccccH---HHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 6678889 9999999999 99999999999999999997653 455667999999999999999999999999999
Q ss_pred eeEEeeccC
Q 023632 92 QVEVKKAEP 100 (279)
Q Consensus 92 ~i~V~~a~~ 100 (279)
.|++-|+++
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999998854
No 89
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.44 E-value=1.9e-07 Score=80.91 Aligned_cols=74 Identities=23% Similarity=0.337 Sum_probs=63.7
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.+|+..+.| .+|+++|.+++++..+.++ +.++||+|+++++|.+||+.|++.+|+++.|+
T Consensus 96 ~~s~~r~~~~~~~~r~~~---qdl~d~~~~~g~~~~~~~~--------~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~ 164 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSW---QDLKDHFRPAGEVTYVDAR--------RNFAFVEFSEQEDAKRALEKLDGKKLNGRRIS 164 (216)
T ss_pred ccccceeeeccchhhhhH---HHHhhhhcccCCCchhhhh--------ccccceeehhhhhhhhcchhccchhhcCceee
Confidence 4455677 9999999999 9999999999999655542 45999999999999999999999999999999
Q ss_pred EeeccC
Q 023632 95 VKKAEP 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|..+..
T Consensus 165 ~~~~~~ 170 (216)
T KOG0106|consen 165 VEKNSR 170 (216)
T ss_pred ecccCc
Confidence 955443
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.38 E-value=1.6e-06 Score=80.46 Aligned_cols=78 Identities=18% Similarity=0.212 Sum_probs=68.1
Q ss_pred Ccee-eeCCCC-CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 19 TQKM-TGLSLT-PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 19 ~~~l-V~nLp~-~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+.+| |.||.+ .||. +.|..+|..||+|.+|+|+.++. --|.|.+.+...|+-|++.|+++.|.+++|+|.
T Consensus 297 n~vllvsnln~~~VT~---d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt 368 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTP---DVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVT 368 (492)
T ss_pred ceEEEEecCchhccch---hHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEe
Confidence 4666 888865 5888 99999999999999999998863 479999999999999999999999999999999
Q ss_pred eccCCCCC
Q 023632 97 KAEPKKPN 104 (279)
Q Consensus 97 ~a~~~~~~ 104 (279)
+++-....
T Consensus 369 ~SKH~~vq 376 (492)
T KOG1190|consen 369 LSKHTNVQ 376 (492)
T ss_pred eccCcccc
Confidence 88755433
No 91
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=4.5e-07 Score=87.20 Aligned_cols=84 Identities=24% Similarity=0.415 Sum_probs=77.4
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
....+| |.+||..+++ ++++|+++.|+.++...++.|..++.+++|||.+|.+....++||+.||++.+.+++|.|
T Consensus 287 ~~~~ki~v~~lp~~l~~---~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTE---DQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred cccchhhhccCcCccCH---HHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 344677 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 023632 96 KKAEPKKP 103 (279)
Q Consensus 96 ~~a~~~~~ 103 (279)
..|.....
T Consensus 364 q~A~~g~~ 371 (500)
T KOG0120|consen 364 QRAIVGAS 371 (500)
T ss_pred ehhhccch
Confidence 98876543
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.32 E-value=1.8e-07 Score=89.43 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=75.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
++.+.++| +--|+..+++ .+|.+||+.+++|.+|.||.|+.+.++|+.|+|+|.+.+++..||. |.++.+.+.+|
T Consensus 175 eERd~Rtvf~~qla~r~~p---RdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv 250 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPP---RDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPV 250 (549)
T ss_pred hHHhHHHHHHHHHhhcCCc---hhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCcee
Confidence 34455677 7788888888 9999999999999999999999999999999999999999999995 59999999999
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
.|+..+..+.+
T Consensus 251 ~vq~sEaeknr 261 (549)
T KOG0147|consen 251 IVQLSEAEKNR 261 (549)
T ss_pred EecccHHHHHH
Confidence 99876654443
No 93
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.25 E-value=8.2e-07 Score=82.71 Aligned_cols=70 Identities=7% Similarity=0.123 Sum_probs=57.8
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeec---CCCC--C--------cccEEEEEEcCHHHHHHH
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRD---HSTS--R--------SRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d---~~tg--~--------~rG~aFV~F~s~e~a~~A 79 (279)
.+++..++| +.|||.+-.- +.|.+||..+|.|+.|+|... +.+. . .+=+|||+|+..+.|.+|
T Consensus 226 ~eel~srtivaenLP~Dh~~---enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA 302 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSY---ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKA 302 (484)
T ss_pred ccccccceEEEecCCcchHH---HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHH
Confidence 345678889 9999999888 999999999999999999866 3221 1 246899999999999999
Q ss_pred HHHcCCC
Q 023632 80 LAKGNKL 86 (279)
Q Consensus 80 i~~lng~ 86 (279)
.+.||..
T Consensus 303 ~e~~~~e 309 (484)
T KOG1855|consen 303 RELLNPE 309 (484)
T ss_pred HHhhchh
Confidence 9998653
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.23 E-value=4.4e-06 Score=61.48 Aligned_cols=73 Identities=10% Similarity=0.171 Sum_probs=47.6
Q ss_pred cee-eeCCCCCCCcccH-HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 20 QKM-TGLSLTPVTEPAL-DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~-~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..| |.|||.+.+..-+ ..|+.++..+| +|.+|. .+.|+|.|.++|.|++|.+.|++..+-+++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 356 9999999886111 45677888885 566651 2489999999999999999999999999999999
Q ss_pred eccCCC
Q 023632 97 KAEPKK 102 (279)
Q Consensus 97 ~a~~~~ 102 (279)
+....+
T Consensus 73 ~~~~~r 78 (90)
T PF11608_consen 73 FSPKNR 78 (90)
T ss_dssp SS--S-
T ss_pred EcCCcc
Confidence 875443
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=3.6e-06 Score=65.31 Aligned_cols=68 Identities=26% Similarity=0.438 Sum_probs=42.7
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC-----CCccCCceeE
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN-----KLELAGAQVE 94 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln-----g~~l~g~~i~ 94 (279)
.| |.+++..|+. ++|+++|++|++|..|.+..... .|+|.|.++++|++||+++. ...|.+..++
T Consensus 3 il~~~g~~~~~~r---e~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~ 73 (105)
T PF08777_consen 3 ILKFSGLGEPTSR---EDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVT 73 (105)
T ss_dssp EEEEEE--SS--H---HHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEE
T ss_pred EEEEecCCCCcCH---HHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEE
Confidence 56 8889999999 99999999999999998876532 79999999999999998763 3456666666
Q ss_pred Eee
Q 023632 95 VKK 97 (279)
Q Consensus 95 V~~ 97 (279)
++.
T Consensus 74 ~~v 76 (105)
T PF08777_consen 74 LEV 76 (105)
T ss_dssp EE-
T ss_pred EEE
Confidence 553
No 96
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.14 E-value=5.9e-06 Score=81.08 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
+-.++| |.|+|++|+- +||.+||..|-.+-.-.+++-.+.+++.|.|.|.|++.|+|.+|...|+++.|..++|.|
T Consensus 865 pGp~V~~~~n~Pf~v~l---~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTL---EDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred CCCeEEEecCCCccccH---HHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 344577 9999999999 999999999976644334444468999999999999999999999999999999999988
Q ss_pred ee
Q 023632 96 KK 97 (279)
Q Consensus 96 ~~ 97 (279)
.+
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 64
No 97
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.07 E-value=1.2e-05 Score=69.34 Aligned_cols=76 Identities=12% Similarity=0.241 Sum_probs=65.1
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC-Ccee
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQV 93 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-g~~i 93 (279)
.+.+..| +.|||.+++. +.|..+|++|.-.++|+++..+ +..|||+|+++..+..|...|++..|- ..++
T Consensus 143 ~ppn~ilf~~niP~es~~---e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m 214 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESES---EMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTM 214 (221)
T ss_pred CCCceEEEEecCCcchhH---HHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceE
Confidence 3455666 9999999999 9999999999999999988764 569999999999999999999887776 7788
Q ss_pred EEeecc
Q 023632 94 EVKKAE 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+|.+++
T Consensus 215 ~i~~a~ 220 (221)
T KOG4206|consen 215 QITFAK 220 (221)
T ss_pred EecccC
Confidence 887764
No 98
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.04 E-value=1e-05 Score=54.90 Aligned_cols=51 Identities=12% Similarity=0.311 Sum_probs=41.8
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 80 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai 80 (279)
+.| |.+++.+..+ +|.++|++||+|+++.+... +-+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~----~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE----EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH----HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 567 9999877764 56668999999999988732 338999999999999986
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.00 E-value=1.1e-05 Score=73.23 Aligned_cols=77 Identities=14% Similarity=0.257 Sum_probs=58.2
Q ss_pred eeCCCCCCCcccH-HHH--HHHHhcCCCeEEEEEeecCCCC-CcccEE--EEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 23 TGLSLTPVTEPAL-DEF--KDFFMQFGDVQEHQIMRDHSTS-RSRGFG--FITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 23 V~nLp~~~te~~~-~~L--~~~F~~~G~V~~v~i~~d~~tg-~~rG~a--FV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
|-.||+.+..++. ..| .++|.+||+|++|.|-+...+- .....+ +|+|.+.|+|.+||.++++..++++.|+..
T Consensus 119 Vigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkat 198 (480)
T COG5175 119 VIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKAT 198 (480)
T ss_pred EecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeee
Confidence 7888888887221 123 4799999999999876554211 112234 999999999999999999999999999987
Q ss_pred ecc
Q 023632 97 KAE 99 (279)
Q Consensus 97 ~a~ 99 (279)
.-.
T Consensus 199 YGT 201 (480)
T COG5175 199 YGT 201 (480)
T ss_pred cCc
Confidence 644
No 100
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2.4e-05 Score=75.36 Aligned_cols=79 Identities=11% Similarity=0.129 Sum_probs=63.4
Q ss_pred CCCcee-eeCCCCCCCcccH----HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC-C
Q 023632 17 TTTQKM-TGLSLTPVTEPAL----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-G 90 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~----~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-g 90 (279)
-....| |.++|.--.. .| .-|.++|+++|+|+.+.++.+.+++ ++|+.|++|.+..+|++|++.||++.|+ .
T Consensus 56 g~D~vVvv~g~PvV~~~-rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPA-RLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CcceEEEECCCcccChh-HHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 334555 9999864332 12 3467799999999999999887655 9999999999999999999999999887 6
Q ss_pred ceeEEee
Q 023632 91 AQVEVKK 97 (279)
Q Consensus 91 ~~i~V~~ 97 (279)
+++.|..
T Consensus 134 Htf~v~~ 140 (698)
T KOG2314|consen 134 HTFFVRL 140 (698)
T ss_pred ceEEeeh
Confidence 7777764
No 101
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.97 E-value=5.5e-06 Score=75.35 Aligned_cols=81 Identities=19% Similarity=0.422 Sum_probs=73.4
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
+.+ |.+|++++++ ++|+++|..++.|..|+++.++.+..+++|++|+|.+.+++.+++.. +...|.+++|.|.+.
T Consensus 186 ~~~~~~~~~f~~~~---d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 186 TIFFVGELDFSLTR---DDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred cceeecccccccch---HHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 344 9999999999 99999999999999999999999999999999999999999999988 788999999999988
Q ss_pred cCCCCC
Q 023632 99 EPKKPN 104 (279)
Q Consensus 99 ~~~~~~ 104 (279)
.+....
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 765443
No 102
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.93 E-value=4.5e-05 Score=70.25 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=61.9
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC--CceeEEeeccC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA--GAQVEVKKAEP 100 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~--g~~i~V~~a~~ 100 (279)
|-|--..+|. +-|..++...|+|..|.|++. ++ --|.|||++.+.|++|.+.||+..|- =.+|+|++|+|
T Consensus 127 IlNp~YpItv---DVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP 198 (494)
T KOG1456|consen 127 ILNPQYPITV---DVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKP 198 (494)
T ss_pred eecCccccch---hhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEEEEecCc
Confidence 4455566787 889999999999999998865 33 36999999999999999999998886 46899999998
Q ss_pred CCCC
Q 023632 101 KKPN 104 (279)
Q Consensus 101 ~~~~ 104 (279)
.+-+
T Consensus 199 ~rln 202 (494)
T KOG1456|consen 199 TRLN 202 (494)
T ss_pred ceee
Confidence 7543
No 103
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.87 E-value=4.3e-05 Score=58.66 Aligned_cols=78 Identities=22% Similarity=0.325 Sum_probs=51.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEE-EeecC------CCCCcccEEEEEEcCHHHHHHHHHHcCCCccC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQ-IMRDH------STSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~-i~~d~------~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~ 89 (279)
..+.| |-++|+..+ ..|.++|++||+|++.. +.++. ..-....+..|+|+++.+|++||.+ |+..|.
T Consensus 5 ~~~wVtVFGfp~~~~----~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~ 79 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS----NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFS 79 (100)
T ss_dssp GCCEEEEE---GGGH----HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEET
T ss_pred CCeEEEEEccCHHHH----HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEc
Confidence 44567 999998865 67889999999998874 11110 0011234899999999999999999 999998
Q ss_pred Cce-eEEeeccC
Q 023632 90 GAQ-VEVKKAEP 100 (279)
Q Consensus 90 g~~-i~V~~a~~ 100 (279)
+.. |-|.+.++
T Consensus 80 g~~mvGV~~~~~ 91 (100)
T PF05172_consen 80 GSLMVGVKPCDP 91 (100)
T ss_dssp TCEEEEEEE-HH
T ss_pred CcEEEEEEEcHH
Confidence 754 45666643
No 104
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.87 E-value=1.3e-05 Score=73.06 Aligned_cols=71 Identities=14% Similarity=0.287 Sum_probs=63.0
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
|+||-|++|+ +||.+.+...| .|.++++..++.++++|+||+|...++.++++.|+.|..++|.++.-.|.
T Consensus 85 vGNL~W~TTD---~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~ 157 (498)
T KOG4849|consen 85 VGNLLWYTTD---ADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVL 157 (498)
T ss_pred ecceeEEecc---HHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeee
Confidence 9999999999 88888777665 56788889999999999999999999999999999999999998766554
No 105
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.86 E-value=8.6e-05 Score=68.44 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=67.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+..++ |-+|....... +.|..+|..||.|++|++|+.+ .+.|.||+-|+.++++||..||+..|-+.+|.|
T Consensus 285 ~~g~VmMVyGLdh~k~N~--drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNC--DRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCcEEEEEeccccccch--hhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 345677 88997654432 7799999999999999999876 568999999999999999999999999999999
Q ss_pred eeccCCC
Q 023632 96 KKAEPKK 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
.+++...
T Consensus 358 ~~SkQ~~ 364 (494)
T KOG1456|consen 358 CVSKQNF 364 (494)
T ss_pred eeccccc
Confidence 9876543
No 106
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.86 E-value=3.7e-05 Score=70.11 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
++|.+-+++||.|.+|.|.- ..+.|.+-|.|.+.++|+.||+.|++..|++|+|..+...-+
T Consensus 291 edl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 67778899999999997753 356889999999999999999999999999999998865543
No 107
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.86 E-value=0.00013 Score=61.50 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=55.7
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
...+| |..||...+| ++||+++.+-|.|...++.+| +.+.|+|...|+++-||.+|+.+++..
T Consensus 114 Se~RVvVsGLp~SgSW---QDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSW---QDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred cceeEEEecCCCCCch---HHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccC
Confidence 34556 9999999999 999999999999999998887 388999999999999999998776654
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.83 E-value=1.8e-05 Score=76.36 Aligned_cols=65 Identities=15% Similarity=0.221 Sum_probs=54.7
Q ss_pred HHHHHHHhcCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~---tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~ 100 (279)
++|+..+.+|+.|..|+|+++-. ..-..+..||+|.+.+++++|+++|++.+|++++|.+.+-.+
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 66777888999999999998722 223356789999999999999999999999999998887654
No 109
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.77 E-value=3.2e-05 Score=66.82 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=50.4
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
..+| |.||..+|+| ++|+.+|+.|--...++|... .+ -..|||+|++.|.|..||..|.+..|
T Consensus 210 cstlfianl~~~~~e---d~l~~~~~~~~gf~~l~~~~~--~g--~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 210 CSTLFIANLGPNCTE---DELKQLLSRYPGFHILKIRAR--GG--MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhhHhhhccCCCCCH---HHHHHHHHhCCCceEEEEecC--CC--cceEeecHHHHHHHHHHHHHhhccee
Confidence 4567 9999999999 999999999976666655322 22 35899999999999999999877554
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.71 E-value=0.0001 Score=60.06 Aligned_cols=77 Identities=17% Similarity=0.337 Sum_probs=53.6
Q ss_pred CCCCcee-eeCCCC------CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 16 QTTTQKM-TGLSLT------PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 16 ~~~~~~l-V~nLp~------~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
-++..+| |.-+.+ ...++.+++|.+.|..||+|.-|+++.+ .-+|+|.+-++|.+|++. ++++|
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~-dg~~v 94 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSL-DGIQV 94 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHG-CCSEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHcc-CCcEE
Confidence 3445556 654441 2333334688889999999998888866 468999999999999988 99999
Q ss_pred CCceeEEeeccCC
Q 023632 89 AGAQVEVKKAEPK 101 (279)
Q Consensus 89 ~g~~i~V~~a~~~ 101 (279)
+++.|+|+...|.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999876654
No 111
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.61 E-value=0.00014 Score=67.80 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=63.4
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC-cee
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG-AQV 93 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g-~~i 93 (279)
.+++.+| +.|||.+|+| ++|+++|..-+-+++......+ .+-+|.+.+++.|+|..|+..++.+.+.. ..|
T Consensus 411 ~PpsatlHlsnip~svse---e~lk~~f~~~g~~vkafkff~k----d~kmal~q~~sveeA~~ali~~hnh~lgen~hl 483 (492)
T KOG1190|consen 411 FPPSATLHLSNIPPSVSE---EDLKNLFQEPGGQVKAFKFFQK----DRKMALPQLESVEEAIQALIDLHNHYLGENHHL 483 (492)
T ss_pred CCchhheeeccCCcccch---hHHHHhhhcCCceEEeeeecCC----CcceeecccCChhHhhhhccccccccCCCCceE
Confidence 3566789 9999999999 9999999888776554433222 23499999999999999999999998884 589
Q ss_pred EEeeccC
Q 023632 94 EVKKAEP 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
+|.+++.
T Consensus 484 RvSFSks 490 (492)
T KOG1190|consen 484 RVSFSKS 490 (492)
T ss_pred EEEeecc
Confidence 9999875
No 112
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.54 E-value=3.5e-05 Score=67.75 Aligned_cols=65 Identities=12% Similarity=0.246 Sum_probs=52.5
Q ss_pred HHHHHHHh-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 36 DEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 36 ~~L~~~F~-~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
++|...|+ +|++|+++.|-.+ ..-..++-++|.|..+|+|++|++.||+-.+.+++|..++..-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 34444555 9999999866554 34566789999999999999999999999999999998876543
No 113
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.51 E-value=5e-05 Score=70.15 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=58.6
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCC----eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGD----VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~----V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
-.| +++||+++++ .++.+||..--. ++.|.+++. .+++..|-|||.|..+++|++||.+ |...|.-|-|+
T Consensus 162 vivRmRGLPfdat~---~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIE 236 (508)
T KOG1365|consen 162 VIVRMRGLPFDATA---LDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIE 236 (508)
T ss_pred eEEEecCCCCCcch---HHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHH
Confidence 344 8899999999 999999964333 345555544 3789999999999999999999998 77777777777
Q ss_pred Eeecc
Q 023632 95 VKKAE 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|.++.
T Consensus 237 lFRST 241 (508)
T KOG1365|consen 237 LFRST 241 (508)
T ss_pred HHHHh
Confidence 65443
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.50 E-value=0.00011 Score=67.91 Aligned_cols=78 Identities=15% Similarity=0.165 Sum_probs=64.5
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCC-eEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGD-VQE--HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~-V~~--v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
+..| +++||++.+. ++|.+||..|-. |.. |.|+.+. .+++.|-|||+|.++|+|..|+.+.+++..+.+-|+
T Consensus 280 kdcvRLRGLPy~Atv---EdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiE 355 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATV---EDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIE 355 (508)
T ss_pred CCeeEecCCChhhhH---HHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEE
Confidence 4456 9999999999 888888888754 333 6777764 789999999999999999999999888888899999
Q ss_pred EeeccC
Q 023632 95 VKKAEP 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|..+..
T Consensus 356 vfp~S~ 361 (508)
T KOG1365|consen 356 VFPCSV 361 (508)
T ss_pred EeeccH
Confidence 976643
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.0004 Score=66.47 Aligned_cols=79 Identities=23% Similarity=0.294 Sum_probs=66.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHh-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH----cCCCccCC
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK----GNKLELAG 90 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~-~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~----lng~~l~g 90 (279)
.+.+|| |+.||..++. ++|..||+ .||.|+-+-|-+|++-+-+||-+-|+|.+..+-.+||++ |+..+| .
T Consensus 368 DprrTVFVGgvprpl~A---~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~-~ 443 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTA---EELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDI-D 443 (520)
T ss_pred CccceEEecCCCCcchH---HHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEecccc-c
Confidence 456778 9999999999 99999998 799999999999988999999999999999999999986 233333 3
Q ss_pred ceeEEeecc
Q 023632 91 AQVEVKKAE 99 (279)
Q Consensus 91 ~~i~V~~a~ 99 (279)
++|+|+.-.
T Consensus 444 KRVEIkPYv 452 (520)
T KOG0129|consen 444 KRVEIKPYV 452 (520)
T ss_pred eeeeeccee
Confidence 467776544
No 116
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.36 E-value=0.0001 Score=74.04 Aligned_cols=78 Identities=15% Similarity=0.199 Sum_probs=70.4
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
...| |.|+|+..|. ++|+.+|++++.++++.+++.+ .+++++.|||.|.++.++.+++..++...++.+.++|..
T Consensus 736 K~~v~i~g~pf~gt~---e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 736 KISVAISGPPFQGTK---EELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhhhheeCCCCCCch---HHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 4556 9999999999 9999999999999999988876 789999999999999999999999888888888888887
Q ss_pred ccC
Q 023632 98 AEP 100 (279)
Q Consensus 98 a~~ 100 (279)
..|
T Consensus 812 snp 814 (881)
T KOG0128|consen 812 SNP 814 (881)
T ss_pred cCC
Confidence 665
No 117
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.30 E-value=0.00012 Score=64.32 Aligned_cols=72 Identities=11% Similarity=0.211 Sum_probs=59.5
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCC--------CCcc----cEEEEEEcCHHHHHHHHHHcC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHST--------SRSR----GFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~t--------g~~r----G~aFV~F~s~e~a~~Ai~~ln 84 (279)
.+-+| +++||+.++- ..|++||+.||+|-.|.|.....+ +.++ --++|+|.+...|+++.+.||
T Consensus 73 k~GVvylS~IPp~m~~---~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Ln 149 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDP---VRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLN 149 (278)
T ss_pred cceEEEeccCCCccCH---HHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhC
Confidence 45677 9999999999 999999999999999988765444 2222 236799999999999999999
Q ss_pred CCccCCce
Q 023632 85 KLELAGAQ 92 (279)
Q Consensus 85 g~~l~g~~ 92 (279)
+..|.+++
T Consensus 150 n~~Iggkk 157 (278)
T KOG3152|consen 150 NTPIGGKK 157 (278)
T ss_pred CCccCCCC
Confidence 99998764
No 118
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.25 E-value=0.00083 Score=60.28 Aligned_cols=73 Identities=19% Similarity=0.121 Sum_probs=57.0
Q ss_pred CCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcc-cEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccC
Q 023632 28 TPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSR-GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~r-G~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~ 100 (279)
-.++++.-+++++.+++|++|..|.|..++..-... ---||+|+..++|.+|+..||+..|.++.+...+...
T Consensus 293 gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 293 GEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred ccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 345543336889999999999999888775322221 2469999999999999999999999999998887654
No 119
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.14 E-value=0.0012 Score=63.25 Aligned_cols=62 Identities=26% Similarity=0.412 Sum_probs=47.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecC---CCCCccc---EEEEEEcCHHHHHHHHHHc
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDH---STSRSRG---FGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~---~tg~~rG---~aFV~F~s~e~a~~Ai~~l 83 (279)
-.++| |+.||++++| ++|.+.|..||.|+ |+.+... .--.++| |+|+.|+++.++++.|.++
T Consensus 258 ~S~KVFvGGlp~dise---~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITE---AQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccceeecCCCccccH---HHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 34677 9999999999 99999999999864 3333211 1223567 9999999999999888774
No 120
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.02 E-value=0.0038 Score=50.60 Aligned_cols=77 Identities=9% Similarity=0.124 Sum_probs=57.1
Q ss_pred CCCCCcee-eeCCCCCCCc-ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPVTE-PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te-~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.+++..+| |.=|..++.. +|++.+...++.||+|++|.+.- +-.|.|+|+|..+|-+|+.+++. ..-+..
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm 153 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTM 153 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCce
Confidence 35566677 8877777664 34455666778999999997642 22799999999999999999865 566777
Q ss_pred eEEeecc
Q 023632 93 VEVKKAE 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
+.+.+..
T Consensus 154 ~qCsWqq 160 (166)
T PF15023_consen 154 FQCSWQQ 160 (166)
T ss_pred EEeeccc
Confidence 7777653
No 121
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.00 E-value=0.0032 Score=43.94 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=43.1
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcC---CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQF---GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~---G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
...+| |.+|.. ++. ++|+++|..| -....|+.+-|. -|-|.|.+++.|.+||.+|
T Consensus 4 rpeavhirGvd~-lsT---~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LST---DDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCH---HHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 34567 888854 555 7899999888 235678888885 5889999999999999875
No 122
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.96 E-value=0.00026 Score=64.60 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=58.5
Q ss_pred eeCCCCCCCcccHHHH--HHHHhcCCCeEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 23 TGLSLTPVTEPALDEF--KDFFMQFGDVQEHQIMRDHSTS---RSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 23 V~nLp~~~te~~~~~L--~~~F~~~G~V~~v~i~~d~~tg---~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
|-.|+..+.++ ..| .+.|.+|+.|.+|.+-.++.+. -...-++|+|+.+|+|+.||...+++.++++.|++.+
T Consensus 82 vvgl~~~~ade--~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 82 VVGLPLDLADE--SVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASL 159 (327)
T ss_pred hhCCCccccch--hhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhh
Confidence 67788777662 233 3688999999999888776311 1123489999999999999999999999999877776
Q ss_pred ccCC
Q 023632 98 AEPK 101 (279)
Q Consensus 98 a~~~ 101 (279)
..++
T Consensus 160 gttk 163 (327)
T KOG2068|consen 160 GTTK 163 (327)
T ss_pred CCCc
Confidence 6554
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.91 E-value=5.7e-05 Score=75.85 Aligned_cols=68 Identities=16% Similarity=0.231 Sum_probs=58.2
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~ 89 (279)
..++ |.||+..+.+ .+|.+.|..++.|+.|+|.-.+.+++.||.|+|+|.+++++.+||...+.+.+.
T Consensus 667 ~~~~fvsnl~~~~~~---~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSE---EDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcC---chhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3456 9999999999 999999999999988887766678999999999999999999999875554444
No 124
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.86 E-value=0.0011 Score=64.11 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=52.2
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhc--CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCccCCce
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQ--FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQ 92 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~--~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln--g~~l~g~~ 92 (279)
+.+.| |+-||+++-+ |++|.||+. +-++.+|++-.+. -=||+|++++||++|.+.|. -++|.+++
T Consensus 174 kRcIvilREIpettp~---e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPI---EVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChH---HHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 34556 9999999999 999999964 6678888776542 24899999999999988763 36677776
Q ss_pred eEE
Q 023632 93 VEV 95 (279)
Q Consensus 93 i~V 95 (279)
|..
T Consensus 244 ImA 246 (684)
T KOG2591|consen 244 IMA 246 (684)
T ss_pred hhh
Confidence 644
No 125
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.83 E-value=0.0032 Score=56.78 Aligned_cols=69 Identities=16% Similarity=0.176 Sum_probs=53.5
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce-eEE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ-VEV 95 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~-i~V 95 (279)
....| |-++|..-. ..|..+|++||+|+++....+ --|-.|.|.+..+|+|||.+ |++.|++.. |-|
T Consensus 196 ~D~WVTVfGFppg~~----s~vL~~F~~cG~Vvkhv~~~n------gNwMhirYssr~~A~KALsk-ng~ii~g~vmiGV 264 (350)
T KOG4285|consen 196 ADTWVTVFGFPPGQV----SIVLNLFSRCGEVVKHVTPSN------GNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGV 264 (350)
T ss_pred ccceEEEeccCccch----hHHHHHHHhhCeeeeeecCCC------CceEEEEecchhHHHHhhhh-cCeeeccceEEee
Confidence 35667 888887665 467889999999998865522 23889999999999999999 888888654 455
Q ss_pred ee
Q 023632 96 KK 97 (279)
Q Consensus 96 ~~ 97 (279)
+.
T Consensus 265 kp 266 (350)
T KOG4285|consen 265 KP 266 (350)
T ss_pred ee
Confidence 54
No 126
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.80 E-value=0.0013 Score=61.10 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=57.8
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHST---SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~t---g~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
..| |.||.+.+|. ++++.||.-.|+|.++.|+..... ....-.|||.|.|.+++..|-.. .++.|-++.|.|
T Consensus 8 ~vIqvanispsat~---dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv 83 (479)
T KOG4676|consen 8 GVIQVANISPSATK---DQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIV 83 (479)
T ss_pred ceeeecccCchhhH---HHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEE
Confidence 478 9999999999 999999999999999988764321 22345899999999988877554 556666666666
Q ss_pred eec
Q 023632 96 KKA 98 (279)
Q Consensus 96 ~~a 98 (279)
..+
T Consensus 84 ~p~ 86 (479)
T KOG4676|consen 84 RPY 86 (479)
T ss_pred Eec
Confidence 544
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.77 E-value=0.0044 Score=45.71 Aligned_cols=56 Identities=11% Similarity=0.207 Sum_probs=42.4
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
..+.+ |. +|.++.. .||.++|+.||.|. |..+.|. -|||...+.+.|+.|+..++.
T Consensus 8 RdHVFhlt-FPkeWK~---~DI~qlFspfG~I~-VsWi~dT-------SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKT---SDIYQLFSPFGQIY-VSWINDT-------SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp GCCEEEEE---TT--H---HHHHHHCCCCCCEE-EEEECTT-------EEEEEECCCHHHHHHHHHHTT
T ss_pred cceEEEEe-CchHhhh---hhHHHHhccCCcEE-EEEEcCC-------cEEEEeecHHHHHHHHHHhcc
Confidence 34566 77 9999999 99999999999975 4455553 799999999999999998753
No 128
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.72 E-value=0.013 Score=45.79 Aligned_cols=68 Identities=18% Similarity=0.226 Sum_probs=51.3
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
.+..+ +...|..++. ++|..+.+.+- .|+.++|++|. ..++-.+.++|.+.++|++-.+++|++.++.
T Consensus 12 ~~~~~~l~vp~~~~~~---d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPS---DFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccH---HHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 34444 6666666666 67776666664 46778898874 3466789999999999999999999988774
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.67 E-value=0.0035 Score=60.66 Aligned_cols=84 Identities=11% Similarity=0.033 Sum_probs=59.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHh-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC----
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---- 89 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~-~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~---- 89 (279)
+...+++ |.|+|...|. ..|.+.-+ ..+.-.-+.++.|-.+..+.|||||.|.+++++..+.+++|++.++
T Consensus 385 e~~rtt~~iknipNK~T~---~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS 461 (549)
T KOG4660|consen 385 ECPRTTLMIKNIPNKYTS---KMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNS 461 (549)
T ss_pred cCchhhhHhhccCchhhH---HhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcc
Confidence 3344455 7777766665 54444332 3455566778888888999999999999999999999999997654
Q ss_pred CceeEEeeccCCC
Q 023632 90 GAQVEVKKAEPKK 102 (279)
Q Consensus 90 g~~i~V~~a~~~~ 102 (279)
.+.++|.+|+-+.
T Consensus 462 ~Kia~itYArIQG 474 (549)
T KOG4660|consen 462 EKIASITYARIQG 474 (549)
T ss_pred eeeeeeehhhhhc
Confidence 3455666666443
No 130
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.64 E-value=0.0014 Score=63.89 Aligned_cols=76 Identities=9% Similarity=0.179 Sum_probs=59.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHh-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc---C
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL---A 89 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~-~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l---~ 89 (279)
....+++| |.||-.-+|. -+|++++. ..+.|++.+|-+- |-.|||.|.+.++|.+.+.+||+..| +
T Consensus 440 R~~~SnvlhI~nLvRPFTl---gQLkelL~rtgg~Vee~WmDkI------KShCyV~yss~eEA~atr~AlhnV~WP~sN 510 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTL---GQLKELLGRTGGNVEEFWMDKI------KSHCYVSYSSVEEAAATREALHNVQWPPSN 510 (718)
T ss_pred CCCccceEeeecccccchH---HHHHHHHhhccCchHHHHHHHh------hcceeEecccHHHHHHHHHHHhccccCCCC
Confidence 44567788 9999999999 99999997 5667777744222 44899999999999999999999766 3
Q ss_pred CceeEEeecc
Q 023632 90 GAQVEVKKAE 99 (279)
Q Consensus 90 g~~i~V~~a~ 99 (279)
.+.|.|.++.
T Consensus 511 PK~L~adf~~ 520 (718)
T KOG2416|consen 511 PKHLIADFVR 520 (718)
T ss_pred CceeEeeecc
Confidence 5667777654
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.54 E-value=0.0018 Score=64.18 Aligned_cols=77 Identities=14% Similarity=0.004 Sum_probs=63.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~-v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
.....| |..||..+++ .++.++|++.-.|++ |.|..-+ +.+.+..|||+|..++++.+|+...+.+.+..+.|+
T Consensus 432 ~ag~~lyv~~lP~~t~~---~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPI---VPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccc---cchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEE
Confidence 345678 9999999999 999999988878887 5555543 778889999999999988888887777777788888
Q ss_pred Eee
Q 023632 95 VKK 97 (279)
Q Consensus 95 V~~ 97 (279)
|..
T Consensus 508 v~s 510 (944)
T KOG4307|consen 508 VDS 510 (944)
T ss_pred eec
Confidence 863
No 132
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.51 E-value=0.0014 Score=62.20 Aligned_cols=73 Identities=16% Similarity=0.251 Sum_probs=58.0
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
.+.| |.-+|+.+.. |++|..+|.+||+|+.|.|-... -.|.|+|.+..+|-+|... +...|+++.|+|.|
T Consensus 372 hs~l~lek~~~glnt--~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~w 442 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNT--IADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFW 442 (526)
T ss_pred cchhhhhccCCCCch--HhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhcc-ccceecCceeEEEE
Confidence 3445 5566666554 48999999999999999886552 2689999999999777665 78999999999999
Q ss_pred ccC
Q 023632 98 AEP 100 (279)
Q Consensus 98 a~~ 100 (279)
-++
T Consensus 443 hnp 445 (526)
T KOG2135|consen 443 HNP 445 (526)
T ss_pred ecC
Confidence 876
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=96.38 E-value=0.0044 Score=63.04 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=66.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC--Cc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA--GA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~--g~ 91 (279)
+...++.+ |..|+.++.. ..|..+|..||.|..|.+-.. .-||+|.+++...++.|++.|.+..|. .+
T Consensus 451 kst~ttr~~sgglg~w~p~---~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~ 521 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPV---SRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPR 521 (975)
T ss_pred ccccceeeccCCCCCCChH---HHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCc
Confidence 34556778 9999999998 999999999999999876422 349999999999999999999998887 47
Q ss_pred eeEEeeccCCC
Q 023632 92 QVEVKKAEPKK 102 (279)
Q Consensus 92 ~i~V~~a~~~~ 102 (279)
.|.|.+|.+.-
T Consensus 522 r~rvdla~~~~ 532 (975)
T KOG0112|consen 522 RLRVDLASPPG 532 (975)
T ss_pred ccccccccCCC
Confidence 79999887643
No 134
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.31 E-value=0.003 Score=63.81 Aligned_cols=76 Identities=17% Similarity=0.207 Sum_probs=63.2
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC--CceeEEeeccC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA--GAQVEVKKAEP 100 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~--g~~i~V~~a~~ 100 (279)
+.|.+.+.+. ..|..+|++|+.|++++.+++-. .|.|+|.+.|.|..|+++|+++++- +-+.+|.+|++
T Consensus 303 ~~nn~v~~tS---ssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 303 LENNAVNLTS---SSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhcccccchH---HHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 5555666676 88999999999999999988843 7999999999999999999998765 78899999987
Q ss_pred CCCCCCC
Q 023632 101 KKPNLPQ 107 (279)
Q Consensus 101 ~~~~~~~ 107 (279)
-..-+++
T Consensus 374 ~~~~ep~ 380 (1007)
T KOG4574|consen 374 LPMYEPP 380 (1007)
T ss_pred cccccCC
Confidence 6655544
No 135
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.18 E-value=0.0036 Score=53.00 Aligned_cols=81 Identities=16% Similarity=0.094 Sum_probs=47.3
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhc-CCCe---EEEEEeecC-CCC-CcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQ-FGDV---QEHQIMRDH-STS-RSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~-~G~V---~~v~i~~d~-~tg-~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
..+| |++||+++|| +++.+.++. +... ..+.-.... ... ....-|+|.|.+.+++...++.++++.|.+.
T Consensus 7 ~~KvVIR~LPP~Lte---eeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTE---EEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp --EEEEEEE-TTS-H---HHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred CceEEEeCCCCCCCH---HHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 3466 9999999999 888876655 4443 233211111 111 1234699999999999999999999766542
Q ss_pred -----eeEEeeccCCC
Q 023632 92 -----QVEVKKAEPKK 102 (279)
Q Consensus 92 -----~i~V~~a~~~~ 102 (279)
...|++|.-++
T Consensus 84 kg~~~~~~VE~Apyqk 99 (176)
T PF03467_consen 84 KGNEYPAVVEFAPYQK 99 (176)
T ss_dssp TS-EEEEEEEE-SS--
T ss_pred CCCCcceeEEEcchhc
Confidence 44666665533
No 136
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.17 E-value=0.013 Score=49.89 Aligned_cols=62 Identities=11% Similarity=0.220 Sum_probs=45.7
Q ss_pred cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCccCCceeEEeeccCC
Q 023632 34 ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGAQVEVKKAEPK 101 (279)
Q Consensus 34 ~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln--g~~l~g~~i~V~~a~~~ 101 (279)
.++.|+++|.++..+..+.+++.- .=..|.|.+.++|++|...|+ ...|.+..|+|.++++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 348899999999999888777542 257899999999999999999 88999999999988544
No 137
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.16 E-value=0.0049 Score=54.47 Aligned_cols=75 Identities=13% Similarity=0.218 Sum_probs=59.7
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC----ccCCceeE
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL----ELAGAQVE 94 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~----~l~g~~i~ 94 (279)
+.| |.||+.-++. +.|.+.|+.|++|+...|+.| ...++.+-.+|+|.+.-.+.+|+..++.. ++..+++-
T Consensus 32 a~l~V~nl~~~~sn---dll~~~f~~fg~~e~av~~vD-~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~ 107 (275)
T KOG0115|consen 32 AELYVVNLMQGASN---DLLEQAFRRFGPIERAVAKVD-DRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVG 107 (275)
T ss_pred ceEEEEecchhhhh---HHHHHhhhhcCccchheeeec-ccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccC
Confidence 667 9999999999 999999999999988777766 36778889999999999999999887432 33344555
Q ss_pred Eeec
Q 023632 95 VKKA 98 (279)
Q Consensus 95 V~~a 98 (279)
|...
T Consensus 108 VeP~ 111 (275)
T KOG0115|consen 108 VEPM 111 (275)
T ss_pred CChh
Confidence 5443
No 138
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.12 E-value=0.0043 Score=58.35 Aligned_cols=76 Identities=22% Similarity=0.328 Sum_probs=58.1
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC-CccCCceeEEee
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELAGAQVEVKK 97 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng-~~l~g~~i~V~~ 97 (279)
.++ +.||.+.++. ++|+.+|...-.-..-.++. ..+++||.+.+...|.+||+.+++ .++.+++++|+.
T Consensus 2 nklyignL~p~~~p---sdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTP---SDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCCh---HHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 457 9999999999 99999996541111111111 146999999999999999999987 578899999998
Q ss_pred ccCCCCC
Q 023632 98 AEPKKPN 104 (279)
Q Consensus 98 a~~~~~~ 104 (279)
..+++.+
T Consensus 73 sv~kkqr 79 (584)
T KOG2193|consen 73 SVPKKQR 79 (584)
T ss_pred hhhHHHH
Confidence 8877654
No 139
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.99 E-value=0.023 Score=41.01 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=34.7
Q ss_pred CCCcccHHHHHHHHhcCCC-----eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 29 PVTEPALDEFKDFFMQFGD-----VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 29 ~~te~~~~~L~~~F~~~G~-----V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
.++. .+|..++..... |-+|+|..+ |+||+-.. +.|+++|+.|+...+.+++|+|+.|
T Consensus 12 g~~~---~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTP---RDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--H---HHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCH---HHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 777777766543 457777655 88998875 4789999999999999999999876
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.86 E-value=0.0023 Score=64.98 Aligned_cols=81 Identities=15% Similarity=0.199 Sum_probs=65.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+...+.+| ++||+..+++ .+|+..|..++.|.+|.|.+.+. +.-.-++||.|.+.+.+-+|+..+....|..-.+
T Consensus 368 D~~atrTLf~Gnl~~kl~e---seiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTE---SEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred chhhhhhhhhcCcccchhh---hhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 45667888 9999999999 99999999999999999876642 2223489999999999999999888877766566
Q ss_pred EEeecc
Q 023632 94 EVKKAE 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
++.+-.
T Consensus 444 r~glG~ 449 (975)
T KOG0112|consen 444 RIGLGQ 449 (975)
T ss_pred cccccc
Confidence 665554
No 141
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.69 E-value=0.052 Score=38.44 Aligned_cols=51 Identities=16% Similarity=0.371 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
++|+..+.+|.- ++ |+.|+ .|| ||.|.+.++|++|.+..|+..+....|.+
T Consensus 15 ~d~K~~Lr~y~~-~~--I~~d~-----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 15 EDFKKRLRKYRW-DR--IRDDR-----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred HHHHHHHhcCCc-ce--EEecC-----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 889999999843 33 34453 234 89999999999999999998887777665
No 142
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.50 E-value=0.0071 Score=59.74 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=60.2
Q ss_pred CCCCCceeeeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 15 RQTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 15 ~~~~~~~lV~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..+..++||.||...|.+ +-++.++..+|.|..++++. |+|++|.+++....|+..|+-..+++..|.
T Consensus 37 ~~~~~~vfv~~~~~~~s~---~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~ 104 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQ---EFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLI 104 (668)
T ss_pred CCCCceeEecchhhhhhH---HHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhh
Confidence 334444449999999999 99999999999998876543 999999999999999999999999988887
Q ss_pred Eeec
Q 023632 95 VKKA 98 (279)
Q Consensus 95 V~~a 98 (279)
+...
T Consensus 105 ~~~d 108 (668)
T KOG2253|consen 105 ENVD 108 (668)
T ss_pred ccch
Confidence 7653
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.83 E-value=0.12 Score=49.28 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=55.8
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
...| |--+|..++- .||..|+..+- .|++|+|++|.. -++=.+.|+|.+.++|+.-.+.+|++.|+.
T Consensus 74 ~~mLcilaVP~~mt~---~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTS---HDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccH---HHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 6677 9999999999 88888887654 588999999753 334468999999999999999999988875
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=94.15 E-value=0.044 Score=49.93 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=64.2
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
.+++ |+++.+++.+ .++..++.+.+.+..+.+.....+-.+++++.|.|...+.+..||+......+..+.+...+
T Consensus 88 ~~~~f~g~~s~~~e~---~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 88 SSTFFVGELSENIEE---SEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred cccccccccccchhh---ccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 5666 9999999988 88889999999888888777777888999999999999999999998544566666665555
Q ss_pred ccCC
Q 023632 98 AEPK 101 (279)
Q Consensus 98 a~~~ 101 (279)
....
T Consensus 165 ~~~~ 168 (285)
T KOG4210|consen 165 NTRR 168 (285)
T ss_pred cccc
Confidence 4443
No 145
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=93.73 E-value=0.054 Score=45.65 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=56.6
Q ss_pred CCCCceeeeCCCCCCCc--ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc-e
Q 023632 16 QTTTQKMTGLSLTPVTE--PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-Q 92 (279)
Q Consensus 16 ~~~~~~lV~nLp~~~te--~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~-~ 92 (279)
++.+..|+.+|+.+|-. ++....+.+|.+|-+.+..++++. ..+.-|.|.+++.|.+|..+++...|.++ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34444447788776553 223455667777766655555533 34567899999999999999999999988 8
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+.-+|.+..
T Consensus 82 ~k~yfaQ~~~ 91 (193)
T KOG4019|consen 82 LKLYFAQPGH 91 (193)
T ss_pred EEEEEccCCC
Confidence 8887777543
No 146
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.56 E-value=0.31 Score=47.90 Aligned_cols=78 Identities=10% Similarity=0.185 Sum_probs=57.3
Q ss_pred CCCCcee-eeCCCCC-CCcccHHHHHHHHhcC----CCeEEEEEeecC----------CCCC------------------
Q 023632 16 QTTTQKM-TGLSLTP-VTEPALDEFKDFFMQF----GDVQEHQIMRDH----------STSR------------------ 61 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~-~te~~~~~L~~~F~~~----G~V~~v~i~~d~----------~tg~------------------ 61 (279)
...+++| |.||.|+ |.. ++|..+|..| |.|..|.|.... .++.
T Consensus 171 ~~~T~RLAVvNMDWd~v~A---kDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ 247 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKA---KDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDD 247 (650)
T ss_pred ccccceeeEeccccccccH---HHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccch
Confidence 5678999 9999997 445 7888888776 578888775311 0111
Q ss_pred ------------------cc-cEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 62 ------------------SR-GFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 62 ------------------~r-G~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
.+ =||.|+|++.++|.++.+.++++++...-+.+.
T Consensus 248 ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 248 EEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred hhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 11 379999999999999999999999986544443
No 147
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=0.17 Score=47.63 Aligned_cols=58 Identities=7% Similarity=0.089 Sum_probs=47.6
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
....++| |-++|..... +||..+|+.|..- .+|+++.|. .||.+|++...|..||..-
T Consensus 388 ~dlpHVlEIydfp~efkt---eDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKT---EDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred ccccceeEeccCchhhcc---HHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhcc
Confidence 3446788 9999999998 9999999999653 567777775 7999999999999998763
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=92.93 E-value=0.0056 Score=57.59 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=62.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEE-eecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQI-MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i-~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..++++ |.|||....| +.|..++.+|+.|+.|.+ ++|.+|- ..-|++.+.+.++.||.+||+..|....++
T Consensus 78 qrsrk~Qirnippql~w---evld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k 150 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQW---EVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLK 150 (584)
T ss_pred HHhhhhhHhcCCHHHHH---HHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhh
Confidence 445678 9999999999 999999999999998854 3444332 234788999999999999999999999999
Q ss_pred Eeecc
Q 023632 95 VKKAE 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|.+-.
T Consensus 151 ~~YiP 155 (584)
T KOG2193|consen 151 VGYIP 155 (584)
T ss_pred cccCc
Confidence 97654
No 149
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=92.19 E-value=0.27 Score=34.98 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=45.3
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
++|++.|...| +|.+|.-+..+.+.++--.-||+++...+..+ .++-+.|.+..|+|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCC
Confidence 45777776666 68888888887777777788888887655333 34447888899999876543
No 150
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=91.02 E-value=4.2 Score=41.26 Aligned_cols=61 Identities=8% Similarity=0.113 Sum_probs=44.1
Q ss_pred CCCCcccHHHHHHHHhcCCCe-----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccC
Q 023632 28 TPVTEPALDEFKDFFMQFGDV-----QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~~~G~V-----~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~ 100 (279)
..++. .+|..++..-..| -.|+|..+ |.||+... +.+++.++.|+...+.+++|.|+.+..
T Consensus 497 ~~~~~---~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 497 DGVEV---RHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred cCCCH---HHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 34555 6676666554444 35666544 78998764 568889999999999999999998753
No 151
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=90.67 E-value=0.5 Score=33.60 Aligned_cols=62 Identities=15% Similarity=0.153 Sum_probs=46.6
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~ 100 (279)
++|++.|++.| +|+.|..|..+++..+--.-||+.....+... .|+=+.|.+++|+|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46778888777 68889888888878777788898887654444 4455788899999986543
No 152
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=89.37 E-value=0.91 Score=41.19 Aligned_cols=82 Identities=12% Similarity=0.229 Sum_probs=59.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecC-------CCCCcccEEEEEEcCHHHHHH----HHHH
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDH-------STSRSRGFGFITFDTEQAVDD----LLAK 82 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~-------~tg~~rG~aFV~F~s~e~a~~----Ai~~ 82 (279)
+.-.++.| +.||..+++- .++...|.+|++|+.|.++.+. +..+......+.|-+.+.|.. .|+.
T Consensus 11 D~YrTRSLLfeNv~~sidL---h~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQr 87 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDL---HSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQR 87 (309)
T ss_pred ccceeHHHHHhhccccccH---HHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHH
Confidence 45567888 9999988776 8888999999999999999775 123344577889988877654 3333
Q ss_pred cC--CCccCCceeEEeecc
Q 023632 83 GN--KLELAGAQVEVKKAE 99 (279)
Q Consensus 83 ln--g~~l~g~~i~V~~a~ 99 (279)
|+ .+.|....|+|.+..
T Consensus 88 LsEfK~~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 88 LSEFKTKLKSESLTLSFVS 106 (309)
T ss_pred HHHHHHhcCCcceeEEEEE
Confidence 32 256777788887765
No 153
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=88.71 E-value=1.1 Score=35.32 Aligned_cols=56 Identities=13% Similarity=0.207 Sum_probs=29.5
Q ss_pred eeCCCCCCCccc------HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 023632 23 TGLSLTPVTEPA------LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLA 81 (279)
Q Consensus 23 V~nLp~~~te~~------~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s-~e~a~~Ai~ 81 (279)
|.|++.+.+++. .++|++.|+.|..++ |+.+.++. -++++++|+|.+ -.-...|++
T Consensus 13 i~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 13 IVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred EEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 667765543211 178999999998875 55666643 568899999974 444555554
No 154
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=88.49 E-value=0.074 Score=49.81 Aligned_cols=63 Identities=11% Similarity=0.050 Sum_probs=47.8
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
.+| |.+|+..|.. .+|.++|..+|+|....+... ...-+|-|+|....+...|+.. ++.++.-
T Consensus 152 Rt~~v~sl~~~~~l---~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~-~gre~k~ 215 (479)
T KOG4676|consen 152 RTREVQSLISAAIL---PESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRS-HGRERKR 215 (479)
T ss_pred hhhhhhcchhhhcc---hhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHh-cchhhhh
Confidence 567 9999999998 999999999999877655432 2233667999988888888877 5655553
No 155
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=88.20 E-value=2.5 Score=35.85 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=8.5
Q ss_pred HHHHHHHhcCCCeEEEE
Q 023632 36 DEFKDFFMQFGDVQEHQ 52 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~ 52 (279)
++|-++=+-|++|.++.
T Consensus 89 ~qIGKVDEIfG~i~d~~ 105 (215)
T KOG3262|consen 89 EQIGKVDEIFGPINDVH 105 (215)
T ss_pred hhhcchhhhcccccccE
Confidence 44444445555665543
No 156
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=82.08 E-value=1.6 Score=40.07 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=28.5
Q ss_pred EEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCCCCCC
Q 023632 66 GFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKKPNL 105 (279)
Q Consensus 66 aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~~~~~ 105 (279)
|||+|+++++|+.|++.+..++ .+.++|+.|.++++-.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI~ 38 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDII 38 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccccc
Confidence 7999999999999999764433 3566888776665543
No 157
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=81.62 E-value=0.36 Score=42.07 Aligned_cols=75 Identities=29% Similarity=0.383 Sum_probs=56.6
Q ss_pred CCCcee-eeC----CCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 17 TTTQKM-TGL----SLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 17 ~~~~~l-V~n----Lp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
+...++ .++ |...+++ +.+.++|++-++|+.++|.++.+ ++++-+.||++....++-.++......++--+
T Consensus 78 e~q~~~r~G~shapld~r~~~---ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 78 EEQRTLRCGNSHAPLDERVTE---EILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hhhcccccCCCcchhhhhcch---hhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 334455 666 7777888 88889999999999999998864 78888999999888777778777666554444
Q ss_pred eeEE
Q 023632 92 QVEV 95 (279)
Q Consensus 92 ~i~V 95 (279)
++.+
T Consensus 154 ~~~~ 157 (267)
T KOG4454|consen 154 KVTI 157 (267)
T ss_pred Cccc
Confidence 4433
No 158
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=81.22 E-value=4.5 Score=38.51 Aligned_cols=27 Identities=4% Similarity=0.266 Sum_probs=23.0
Q ss_pred EEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 65 FGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
||.|+|++.+.++.+...+++.++...
T Consensus 260 yAvvec~d~~tsK~iY~~CDG~Eye~s 286 (622)
T COG5638 260 YAVVECEDIETSKNIYSACDGVEYENS 286 (622)
T ss_pred EEEEEeccchhhHHHHhccCccccccc
Confidence 789999999999999999888877643
No 159
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=80.96 E-value=1.3 Score=43.35 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=33.3
Q ss_pred ccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCCC
Q 023632 63 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPKK 102 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~~ 102 (279)
..+++++|++++.+.+|+..+++.......+.|..+....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~ 102 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEV 102 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccc
Confidence 4599999999999999999999988888777777665443
No 160
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=80.95 E-value=0.28 Score=47.90 Aligned_cols=72 Identities=8% Similarity=0.067 Sum_probs=55.0
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
.+++.| |.||+++++- ++|..+++.+--+..+.+..+....+..-+.+|+|+--..++.|+.+||++.+...
T Consensus 229 hke~sll~rni~Pnis~---aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISV---AEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred hHHHHHHHhccCCcccH---HHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccc
Confidence 345677 9999999999 99999999887666666554444455566889999988888888888887766543
No 161
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=80.20 E-value=1.8 Score=36.99 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=41.2
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~A 79 (279)
......+ +.+++..+++ .++..+|..++.+..+.+...........+.++.+.....+..+
T Consensus 222 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAE---EELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALES 283 (306)
T ss_pred ccccceeeccccccccch---hHHHHhccccccceeeeccCCCCCcccccccccchhHHHhhhhh
Confidence 3445666 9999999999 99999999999998777766654444444444444433333333
No 162
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.71 E-value=5.8 Score=36.02 Aligned_cols=57 Identities=14% Similarity=0.117 Sum_probs=38.9
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCH-------HHHHHHHHHcC
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE-------QAVDDLLAKGN 84 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~-------e~a~~Ai~~ln 84 (279)
..| |.|||.++.- .||+..+.+-+.+ -+.|... -+++-||+.|-+. ++++++++.+|
T Consensus 331 ~di~~~nl~rd~rv---~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRV---KDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred cceeeccCccccch---HHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 457 9999999999 9999988876543 2222222 2356799999654 55666666554
No 163
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=74.59 E-value=28 Score=25.23 Aligned_cols=61 Identities=10% Similarity=0.136 Sum_probs=41.2
Q ss_pred CCCCCCCcccHHHHHH-HHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 25 LSLTPVTEPALDEFKD-FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 25 nLp~~~te~~~~~L~~-~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
-+|..+.- +||+. +=..||...++..+.+ --.|-..+.++.++||+.++. ...-+.|+|-.
T Consensus 15 ~f~RPvkf---~dl~~kv~~afGq~mdl~ytn~--------eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 15 QFPRPVKF---KDLQQKVTTAFGQPMDLHYTNN--------ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred ecCCCccH---HHHHHHHHHHhCCeeeEEEecc--------cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 35566665 66654 4467888887766544 256888999999999999865 34445555543
No 164
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=73.76 E-value=25 Score=28.07 Aligned_cols=74 Identities=9% Similarity=-0.012 Sum_probs=46.1
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCC-eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~-V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
+...| |.......+..+.+++++++++-+- ++.+....+ -..|.|+++|+-.+|.+.|....=++..|.+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAl 105 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQ 105 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 34556 6665333222344788888877653 455544322 5789999999988888887654444555655
Q ss_pred eecc
Q 023632 96 KKAE 99 (279)
Q Consensus 96 ~~a~ 99 (279)
..+.
T Consensus 106 nl~p 109 (127)
T PRK10629 106 QDDN 109 (127)
T ss_pred ecCC
Confidence 5543
No 165
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=71.43 E-value=30 Score=26.00 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=45.2
Q ss_pred eCCCCCCCcccHHHHHH-------HHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 24 GLSLTPVTEPALDEFKD-------FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 24 ~nLp~~~te~~~~~L~~-------~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
-+||.+++.++.++|+. .+.+-|.+..+.-+ .++...++.++-+|.+++.+.|..|.-..+. .|+|
T Consensus 9 v~~P~~~~~~~~~~~~a~E~~~a~eLq~~G~~~~lWr~----~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m--~i~V 81 (91)
T PF02426_consen 9 VNVPPDMPPEEVDRLKAREKARAQELQRQGKWRHLWRV----VGRYANVSIFDVEDNDELHELLSSLPLFPYM--DIEV 81 (91)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeEEEEe----cCCcceEEEEECCCHHHHHHHHHhCCCccce--eeeE
Confidence 36888888744444443 33455888887554 4555678899999999999999988655543 4444
No 166
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=71.22 E-value=30 Score=23.59 Aligned_cols=43 Identities=9% Similarity=0.194 Sum_probs=28.7
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
.+|-++|.+.+ .|+.+.+....+ +.+..|.+++.+.|.++|++
T Consensus 16 a~v~~~l~~~~inI~~i~~~~~~~----~~~~rl~~~~~~~~~~~L~~ 59 (66)
T cd04908 16 AAVTEILSEAGINIRALSIADTSE----FGILRLIVSDPDKAKEALKE 59 (66)
T ss_pred HHHHHHHHHCCCCEEEEEEEecCC----CCEEEEEECCHHHHHHHHHH
Confidence 66778887765 577776544321 35656667787788888877
No 167
>PRK11901 hypothetical protein; Reviewed
Probab=70.72 E-value=12 Score=34.74 Aligned_cols=48 Identities=4% Similarity=0.174 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEE--EEcCHHHHHHHHHHcCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI--TFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV--~F~s~e~a~~Ai~~lng 85 (279)
+.|++|.++.. +..++|.+.+..++. -|..| +|.+.++|++||+.|..
T Consensus 257 ~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 257 DTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred HHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCH
Confidence 77888887764 566766655444443 23333 67999999999999853
No 168
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=68.81 E-value=13 Score=25.97 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCCCeEEEEEe
Q 023632 35 LDEFKDFFMQFGDVQEHQIM 54 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~ 54 (279)
+++|+++|+..|+|.-+.|.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 37899999999999876553
No 169
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=68.42 E-value=8.6 Score=28.48 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=37.3
Q ss_pred eeeeCCCCCCCcccHHHHHHHHhcC-C-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 21 KMTGLSLTPVTEPALDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 21 ~lV~nLp~~~te~~~~~L~~~F~~~-G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+++--++.+.+. .+|++.++++ + +|.+|..+.-+. + .-=|||++...++|......+
T Consensus 23 ~y~F~V~~~anK---~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATK---PDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCH---HHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 334445678888 7787777663 3 467776655442 1 125999999888887776553
No 170
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=68.41 E-value=5.2 Score=29.94 Aligned_cols=31 Identities=32% Similarity=0.485 Sum_probs=23.1
Q ss_pred EEEEEcCHHHHHHHHHHc-CCCccCCceeEEe
Q 023632 66 GFITFDTEQAVDDLLAKG-NKLELAGAQVEVK 96 (279)
Q Consensus 66 aFV~F~s~e~a~~Ai~~l-ng~~l~g~~i~V~ 96 (279)
|+|+|++++.|++.|+.- +...|+...++|+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~ 32 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVK 32 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEE
Confidence 689999999999999863 3455666665554
No 171
>PF12687 DUF3801: Protein of unknown function (DUF3801); InterPro: IPR024234 This functionally uncharacterised protein family is found in bacteria. Proteins found in this family are typically between 158 and 187 amino acids in length and include the PcfB protein.
Probab=66.41 E-value=12 Score=32.32 Aligned_cols=60 Identities=18% Similarity=0.220 Sum_probs=39.8
Q ss_pred CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 29 PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 29 ~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
++++++|.+|..+..+||.. ..|+.|+.+...+-..|+.=.|.+.+..|++.+....+..
T Consensus 38 ~i~~~~lk~F~k~AkKyGV~--yav~kdk~~~~~~~~V~FkA~Da~~i~~af~~~~~~~~~~ 97 (204)
T PF12687_consen 38 EITDEDLKEFKKEAKKYGVD--YAVKKDKSTGPGKYDVFFKAKDADVINRAFKEFSAKKLKK 97 (204)
T ss_pred ecCHhhHHHHHHHHHHcCCc--eEEeeccCCCCCcEEEEEEcCcHHHHHHHHHHHHHHhhhh
Confidence 44555567778888899753 3356776665544455555578889999998876555543
No 172
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=65.87 E-value=38 Score=23.20 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=36.9
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
++++.+.+.+.-.|.+|..+ ++...=...|.+.|.+++++.+..
T Consensus 12 ~~~~~~~l~~~p~V~~~~~v----tG~~d~~~~v~~~d~~~l~~~i~~ 55 (74)
T PF01037_consen 12 YDEFAEALAEIPEVVECYSV----TGEYDLILKVRARDMEELEEFIRE 55 (74)
T ss_dssp HHHHHHHHHTSTTEEEEEEE----SSSSSEEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEEEEE----eCCCCEEEEEEECCHHHHHHHHHH
Confidence 37889999999999999877 555566788999999999999766
No 173
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=65.75 E-value=23 Score=23.70 Aligned_cols=51 Identities=8% Similarity=0.085 Sum_probs=35.7
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCH----HHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE----QAVDDLLAK 82 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~----e~a~~Ai~~ 82 (279)
|.+|.-.--. ..|++.+.+.-.|.++.|-... ..+-|+|+.. +++.++|++
T Consensus 4 v~~m~C~~C~---~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 4 VPGMTCEGCA---KKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EESTTSHHHH---HHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHH
T ss_pred ECCcccHHHH---HHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHH
Confidence 5566555455 7889999998889888776542 3677888743 666777766
No 174
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=64.32 E-value=2.6 Score=33.94 Aligned_cols=60 Identities=10% Similarity=0.169 Sum_probs=39.5
Q ss_pred HHHHHHHhc-CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 36 DEFKDFFMQ-FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 36 ~~L~~~F~~-~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
+.|++.+.+ +.....+.|..- ...+..+.|+++++++++++. ....+++..|.++.-.+.
T Consensus 32 ~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~ 92 (153)
T PF14111_consen 32 SALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPD 92 (153)
T ss_pred HHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhccc
Confidence 566665544 232223333321 134788999999999999987 567788888888766643
No 175
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=62.81 E-value=14 Score=33.26 Aligned_cols=79 Identities=18% Similarity=0.099 Sum_probs=45.2
Q ss_pred CcchhhhhhhhhcC-----CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE--cC
Q 023632 1 MKELLTEILTMFIN-----RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF--DT 72 (279)
Q Consensus 1 mk~~~~~~~~~~~~-----~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F--~s 72 (279)
||.|+++....... ...-+++| |-+++++.-. ..|++++..+-.|.-...+.+.. ...+ ..-|.. ++
T Consensus 157 m~~M~e~~~~~~l~~~~~~~~~~~~~~~~~gi~ES~la---~~L~~i~~~~~~~~i~s~p~~~~-~~~~-~~~i~~~~~~ 231 (255)
T COG1058 157 MKPMFENVLLPLLTGRFPSTKYYSRVLRVFGIGESSLA---PTLKDLQDEQPNVTIASYPKDGE-VRLR-ELVIRAEARD 231 (255)
T ss_pred HHHHHHHHHHHHhhccCCCCceEEEEEEEcCCChHHHH---HHHHHHHhcCCCCEEEecCCCCc-eecc-ceEEEEecCC
Confidence 45666665555443 23445667 8888888777 78888888774333222222211 1111 111444 78
Q ss_pred HHHHHHHHHHcC
Q 023632 73 EQAVDDLLAKGN 84 (279)
Q Consensus 73 ~e~a~~Ai~~ln 84 (279)
++.|+++++.+.
T Consensus 232 ~~~~~~~~~~~~ 243 (255)
T COG1058 232 EEEADALLRWLE 243 (255)
T ss_pred HHHHHHHHHHHH
Confidence 888888888763
No 176
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.25 E-value=1.6 Score=41.78 Aligned_cols=74 Identities=7% Similarity=-0.137 Sum_probs=55.6
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEP 100 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~ 100 (279)
+..||..+++ ++|.-+|+.++.|..+.+.+..+....+-.+||+-.+ +++..||..+.-+.+.+.+++|..+..
T Consensus 8 l~d~~~~~~~---~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 8 LKDSVASNNK---DQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred Hhhccccccc---chhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 6778888899 9999999999999888776555555556678887664 456777777666777777777776643
No 177
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=62.06 E-value=32 Score=24.98 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=36.9
Q ss_pred ceeeeCCCCCCCcccHHHHHHHHhcC-C-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 20 QKMTGLSLTPVTEPALDEFKDFFMQF-G-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 20 ~~lV~nLp~~~te~~~~~L~~~F~~~-G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
++++-.++.+.+. .+|++.+++. + +|.+|..+.-+. . .-=|||++...++|..+-..
T Consensus 15 n~y~F~V~~~anK---~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATK---GDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCH---HHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHh
Confidence 3445556788888 8888877763 3 466666554432 1 12599999887777666554
No 178
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=61.63 E-value=16 Score=30.98 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=26.9
Q ss_pred CCeEEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHH
Q 023632 46 GDVQEHQIMRDHS-TSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 46 G~V~~v~i~~d~~-tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
+++..|.+-+... .-..+|-.||+|.+.++|.++++.
T Consensus 132 ~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 132 GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5677776544321 125678899999999999998876
No 179
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=59.70 E-value=58 Score=24.79 Aligned_cols=60 Identities=17% Similarity=0.055 Sum_probs=37.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCC-eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~-V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
+...| |......++.++.+++++.+++-+- +++++...+ --.|.|++.++-.+|.+.|+.
T Consensus 30 e~pAvqIs~~~~~~~~~~~~~v~~~L~~~~I~~k~i~~~~~--------~llirf~~~~~Ql~Ak~~L~~ 91 (101)
T PF13721_consen 30 EDPAVQISASSAGVQLPDAFQVEQALKAAGIAVKSIEQEGD--------SLLIRFDSTDQQLKAKDVLSK 91 (101)
T ss_pred CCCcEEEecCCCCccCChHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHH
Confidence 34556 6665444443333678888877653 444543222 567999999988888777643
No 180
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=58.25 E-value=77 Score=23.79 Aligned_cols=66 Identities=9% Similarity=0.095 Sum_probs=45.7
Q ss_pred CCCCCCCcccHHHHHH-------HHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 25 LSLTPVTEPALDEFKD-------FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 25 nLp~~~te~~~~~L~~-------~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+||.+++.++.++|+. -+.+-|++..+.-+ .++-+-+++..-+|.+++.+.|..|.-..+. +|+|.
T Consensus 9 ~~P~~~~~~~~~~i~a~Eka~a~eLq~~Gk~~~lWRv----~G~~~n~sifdv~s~~eLh~iL~sLPL~p~m--~i~Vt 81 (90)
T TIGR03221 9 NLPVDMPAEKAAAIKAREKAYAQELQREGKWRHLWRV----AGEYANYSIFDVESNDELHTLLSGLPLFPYM--DIEVT 81 (90)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHHHhCCceEEEEEe----cCCceeEEEEEcCCHHHHHHHHHhCCCCcce--EeEEE
Confidence 6888888744444432 34466888887554 4555668888889999999999988655543 56664
No 181
>PF11491 DUF3213: Protein of unknown function (DUF3213) ; InterPro: IPR021583 The backbone structure of this family of proteins has been determined however the function remains unknown. The protein has an alpha and beta structure with a ferredoxin-like fold []. ; PDB: 2F40_A.
Probab=58.00 E-value=26 Score=25.90 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 37 ~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
+++-.+++--.|-.|.|. +-.| .|||.|+ +.+.+.++++.+....+.-+.|+|+.-
T Consensus 15 ~~QYeLsk~~~vyRvFiN-----gYar-~g~VifDe~kl~~e~lL~~le~~kpEVi~ek~lTveEL 74 (88)
T PF11491_consen 15 VKQYELSKNEAVYRVFIN-----GYAR-NGFVIFDESKLSKEELLEMLEEFKPEVIEEKELTVEEL 74 (88)
T ss_dssp HHHHTTTTTTTB-----------TTSS---EEE--B-S-SHHHH---HHHTTT-SS-------SS-
T ss_pred HHHHHhhcccceeeeeec-----cccc-ceEEEECcccCCHHHHHHHHHhcChhheeeccccHHHH
Confidence 344444555556555542 2222 6899997 457888889999888888888888643
No 182
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=56.79 E-value=72 Score=22.98 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=37.2
Q ss_pred eeCCCCCCCcccHHHHHHHHhc-------CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQ-------FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~-------~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
..+||..+|. ++|.++..+ +-.|.-++-..+. .+.|-||+.+=.|+|++.++.+.- +..
T Consensus 5 er~~p~~it~---e~l~~~~~~~~~~~~~~~~V~w~~s~v~~--d~~k~~Cly~Ap~~eaV~~~~~~a-G~p 70 (77)
T PF14026_consen 5 ERDFPGGITA---EDLAAAHAKSCAVQAEMPGVQWLRSYVSE--DDGKIFCLYEAPDEEAVREHARRA-GLP 70 (77)
T ss_pred EEeCCCCCCH---HHHHHHHHHhHHHHhhcCCeEEEEEEEec--CCCeEEEEEECCCHHHHHHHHHHc-CCC
Confidence 7789998888 666665443 3233333322232 223568888888999998888773 543
No 183
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=56.54 E-value=60 Score=21.98 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=27.0
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.+|.++|.+++ .|..+.+...+.. ......++++..++++++++.|
T Consensus 16 ~~l~~~l~~~~i~i~~~~~~~~~~~--~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 16 AEVTQILGDAGISIKNIEILEIREG--IGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHcCCCceeeEeEEeecC--CcEEEEEEECCHHHHHHHHHHH
Confidence 67888888776 4666654443211 2345567776655666666554
No 184
>PF14893 PNMA: PNMA
Probab=56.32 E-value=16 Score=34.15 Aligned_cols=22 Identities=9% Similarity=0.012 Sum_probs=16.5
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHh
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFM 43 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~ 43 (279)
.+.| |.+||.+|++ ++|++.+.
T Consensus 18 ~r~lLv~giP~dc~~---~ei~e~l~ 40 (331)
T PF14893_consen 18 QRALLVLGIPEDCEE---AEIEEALQ 40 (331)
T ss_pred hhhheeecCCCCCCH---HHHHHHHH
Confidence 3556 9999999999 66665543
No 185
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=54.65 E-value=6.5 Score=37.29 Aligned_cols=46 Identities=15% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHHHHHhc--CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 023632 36 DEFKDFFMQ--FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 81 (279)
Q Consensus 36 ~~L~~~F~~--~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~ 81 (279)
++|+.+|.. ..++..|.+-+|.....+++..||+|...+.+++++.
T Consensus 197 ~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 197 EDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 488999988 6778888888887778889999999999999999984
No 186
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.30 E-value=26 Score=28.71 Aligned_cols=46 Identities=17% Similarity=0.217 Sum_probs=35.6
Q ss_pred CCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 25 LSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.|+..+.+ +.|+++.+..+.|.+.+ -.| -.+.|-|.+.+.+||+.+
T Consensus 118 ~L~epl~~---eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~ 163 (170)
T COG4010 118 HLREPLAE---ERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEI 163 (170)
T ss_pred ecCchhHH---HHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHH
Confidence 46666777 88999999889887765 333 246788999999999886
No 187
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=53.65 E-value=58 Score=22.91 Aligned_cols=45 Identities=13% Similarity=0.129 Sum_probs=29.7
Q ss_pred cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 34 ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 34 ~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++++|++++++++ +.-+.|. . + -.=.+.|+.++++++++++++.+
T Consensus 35 ~i~~~~~~~~~~G-a~~~~~s-G--s-G~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 35 EIDELKEAAEENG-ALGAKMS-G--S-GGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHHHTT-ESEEEEE-T--T-SSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCceecC-C--C-CCCCeEEEEECCHHHHHHHHHHH
Confidence 3477888888888 3333332 1 1 01247788888999988888876
No 188
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=53.44 E-value=12 Score=30.95 Aligned_cols=38 Identities=18% Similarity=0.454 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+++|++||+.|-.++.- +-.-+..|.++++|.++|++.
T Consensus 116 l~~I~~fF~~YK~le~~-----------k~~~~~g~~~~~~A~~~I~~~ 153 (155)
T cd00412 116 LDEIKHFFEHYKDLEGK-----------KEVKVAGWKDKEEALKIIKES 153 (155)
T ss_pred HHHHHHHHHHhcccCCC-----------CceEECcCcCHHHHHHHHHHH
Confidence 37899999988543310 113355888999999988763
No 189
>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]
Probab=53.21 E-value=19 Score=34.61 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=45.3
Q ss_pred hcCCCCCCcee-eeC----CCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 12 FINRQTTTQKM-TGL----SLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 12 ~~~~~~~~~~l-V~n----Lp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
......+.+-| |.| |-..++. ++|.+++.- -.-+.|.|+.|.. |+--+|++. +....++..+..
T Consensus 220 A~~~~~kVkGvlitNPsNPLG~~~~~---e~L~~ll~F-a~~kniHvI~DEI------ya~sVF~~~-~F~Sv~ev~~~~ 288 (471)
T KOG0256|consen 220 ARKLGLKVKGVLITNPSNPLGTTLSP---EELISLLNF-ASRKNIHVISDEI------YAGSVFDKS-EFRSVLEVRKDP 288 (471)
T ss_pred HHHhCCceeEEEEeCCCCCCCCccCH---HHHHHHHHH-HhhcceEEEeehh------hcccccCcc-CceEHHHHhhcc
Confidence 33345555556 665 4445666 666665532 2236677776643 444455444 333334444445
Q ss_pred ccCCceeEEeeccCCCCC
Q 023632 87 ELAGAQVEVKKAEPKKPN 104 (279)
Q Consensus 87 ~l~g~~i~V~~a~~~~~~ 104 (279)
+++-..|.|-++.+|.--
T Consensus 289 ~~~~~rvHivyslSKD~G 306 (471)
T KOG0256|consen 289 HLDPDRVHIVYSLSKDFG 306 (471)
T ss_pred ccCCCcEEEEEEeccccC
Confidence 556777888888887653
No 190
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=52.24 E-value=80 Score=22.17 Aligned_cols=50 Identities=6% Similarity=0.135 Sum_probs=34.1
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
.+|...+++.+ .|..+.+...+..+.....--|+..+.++++..|+.|..
T Consensus 21 ~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~ 71 (80)
T PF13291_consen 21 ADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQ 71 (80)
T ss_dssp HHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCT
T ss_pred HHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHC
Confidence 67778887765 477777766533344444555666899999999999854
No 191
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=51.38 E-value=28 Score=28.05 Aligned_cols=46 Identities=17% Similarity=0.434 Sum_probs=24.9
Q ss_pred CCCcccHHHHHHHHhc-CC-CeEEEEEeecC----CCCCcccEEEEEEcCHHHHHH
Q 023632 29 PVTEPALDEFKDFFMQ-FG-DVQEHQIMRDH----STSRSRGFGFITFDTEQAVDD 78 (279)
Q Consensus 29 ~~te~~~~~L~~~F~~-~G-~V~~v~i~~d~----~tg~~rG~aFV~F~s~e~a~~ 78 (279)
+++. +||++.+.+ |. .=.++.|+..- -.+++.+||.| |+|.|.|.+
T Consensus 35 TpSr---~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~kk 86 (132)
T PTZ00071 35 TVSK---KDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALKK 86 (132)
T ss_pred CCCH---HHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 4555 777766644 44 12233333322 24667788765 777666543
No 192
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=50.44 E-value=1e+02 Score=22.83 Aligned_cols=55 Identities=7% Similarity=0.067 Sum_probs=32.0
Q ss_pred eeCCCCCCCcccH-HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 23 TGLSLTPVTEPAL-DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 23 V~nLp~~~te~~~-~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
|..++..++-++| ++++++|+-.- ..-.++.+- +.+.+ |+|.|.++++.|+..+.
T Consensus 13 it~~d~~~s~e~L~~~v~~~c~~~~~q~ft~kw~D--EEGDp-----~tiSS~~EL~EA~rl~~ 69 (83)
T cd06404 13 ITSIDPSISLEELCNEVRDMCRFHNDQPFTLKWID--EEGDP-----CTISSQMELEEAFRLYE 69 (83)
T ss_pred EEEcCCCcCHHHHHHHHHHHhCCCCCCcEEEEEEC--CCCCc-----eeecCHHHHHHHHHHHH
Confidence 6667777775222 44555654321 122233322 23333 89999999999998753
No 193
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=50.37 E-value=56 Score=23.12 Aligned_cols=52 Identities=6% Similarity=0.229 Sum_probs=31.2
Q ss_pred CCCCCCCcccHHHHHHHH-hcCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 25 LSLTPVTEPALDEFKDFF-MQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F-~~~G~V-~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.||..++- ++|.+.. .+|... ..+.|....+.+ -+|+..+.++.+.||+.+.
T Consensus 16 ~~~~~~s~---~dL~~~i~~~~~~~~~~~~l~Y~Dedg-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T smart00666 16 SVPRDISF---EDLRSKVAKRFGLDNQSFTLKYQDEDG-----DLVSLTSDEDLEEAIEEYD 69 (81)
T ss_pred EECCCCCH---HHHHHHHHHHhCCCCCCeEEEEECCCC-----CEEEecCHHHHHHHHHHHH
Confidence 35667777 6665544 334321 234443321222 2799999999999999864
No 194
>PF11627 HnRNPA1: Nuclear factor hnRNPA1; InterPro: IPR021662 This family of proteins represents hnRNPA1, a nuclear factor that binds to Pol II transcripts. The family of hnRNP proteins are involved in numerous RNA-related activities [].
Probab=49.46 E-value=33 Score=21.23 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=18.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCC
Q 023632 219 ESYGGYGGSGVGGGGGYGGGPSGYDIGLGSSYGG-SSG 255 (279)
Q Consensus 219 ~~~g~~g~~~~~~~~~~g~~~~~y~~~~~~~~g~-~~~ 255 (279)
.++++|-. +.++|++++++.+++ ++.
T Consensus 5 ndFGnyn~-----------qsSnfGPmKggnfgG~Rss 31 (37)
T PF11627_consen 5 NDFGNYNN-----------QSSNFGPMKGGNFGGGRSS 31 (37)
T ss_pred cccccccc-----------ccCcccccccCCcCCcccc
Confidence 36666665 446999999988888 443
No 195
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=49.41 E-value=98 Score=22.36 Aligned_cols=57 Identities=12% Similarity=0.116 Sum_probs=37.6
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
|.|-|--+ +.+..+|+.-+ .|+++.+-...+.+.+| +-++...+++.+++.+++|+.
T Consensus 9 v~n~pGVL-----~Ri~~lf~rRgfNI~Sl~vg~te~~~~sr-iti~~~~~~~~i~qi~kQL~K 66 (76)
T PRK06737 9 IHNDPSVL-----LRISGIFARRGYYISSLNLNERDTSGVSE-MKLTAVCTENEATLLVSQLKK 66 (76)
T ss_pred EecCCCHH-----HHHHHHHhccCcceEEEEecccCCCCeeE-EEEEEECCHHHHHHHHHHHhC
Confidence 66655443 45788887766 57777655332223333 566667899999999999865
No 196
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=48.62 E-value=92 Score=21.86 Aligned_cols=49 Identities=18% Similarity=0.247 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCc-ccEEEEEEc-CHHHHHHHHHHcCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRS-RGFGFITFD-TEQAVDDLLAKGNK 85 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~-rG~aFV~F~-s~e~a~~Ai~~lng 85 (279)
.++.++|+.++ |.-.+|..-+...+. .=.-||+|+ +.+++++||+.|..
T Consensus 15 ~~vL~~f~~~~-iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 15 ARALKLFEEFG-VNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred HHHHHHHHHCC-CcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 66777887775 333333333222222 224467777 56677888888743
No 197
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=48.57 E-value=9.8 Score=34.08 Aligned_cols=76 Identities=13% Similarity=0.171 Sum_probs=52.7
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeecc
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~ 99 (279)
+.++-.+|..+.+.-+...|+.+-.++..++++++ .+..+.++|+.|+..+...++-.+-+.+.|.-.+|++.-..
T Consensus 101 ~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gt 176 (290)
T KOG0226|consen 101 QSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGT 176 (290)
T ss_pred ccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceeecccc
Confidence 55555555542112246778877777777777775 45667899999999988888887777788777766655433
No 198
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=48.55 E-value=60 Score=32.01 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=35.0
Q ss_pred HHHHHHHh----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 36 DEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 36 ~~L~~~F~----~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
-+|..+|. .+|.|+++.|...+... .+-..++.|.+.++|.+|+..+.
T Consensus 204 ~dl~~l~~Gs~GtlGIIt~atlkl~p~p~-~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 204 FDLLALFTGSEGMLGVVTEVTVKLLPKPP-VARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred cchHhhhccCCCccEEEEEEEEEEEcCCc-ceEEEEEECCCHHHHHHHHHHHH
Confidence 46677665 67888888776655432 34577889999999999988763
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=48.27 E-value=4.9 Score=30.08 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=19.3
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHH
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDF 41 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~ 41 (279)
.....++| |.+||..++| ++|++.
T Consensus 48 ~~vs~rtVlvsgip~~l~e---e~l~D~ 72 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDE---EELRDK 72 (88)
T ss_pred EcccCCEEEEeCCCCCCCh---hhheee
Confidence 35667888 9999999999 887764
No 200
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=48.12 E-value=70 Score=23.22 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=33.4
Q ss_pred eeCCCCCCCcccHHHHH----HHHhcCCCeEEEEEeecCCCCC-cccE---EEEEEcCHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFK----DFFMQFGDVQEHQIMRDHSTSR-SRGF---GFITFDTEQAVDDLL 80 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~----~~F~~~G~V~~v~i~~d~~tg~-~rG~---aFV~F~s~e~a~~Ai 80 (279)
+-.|..++++++++++. ++-.+.-.|+++.+-++..... .++| .+++|+|.++.++-+
T Consensus 6 lfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 6 LFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 44567777773333323 3324556678887766644332 2333 456899998877644
No 201
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=48.09 E-value=83 Score=26.36 Aligned_cols=47 Identities=11% Similarity=0.150 Sum_probs=37.7
Q ss_pred CCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 25 LSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
+|+..+.+ +.|.++.+-+|.|.+. .+. --.+.|-+.+.+++||+.+.
T Consensus 118 ~l~~~i~~---erl~ei~E~~gvI~Ef---ee~-------~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 118 KLKKPIQE---ERLQEISEWHGVIFEF---EED-------DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ecCccchH---HHHHHHHHHhceeEEe---cCC-------cEEEEeccHHHHHHHHHHHH
Confidence 68999999 9999999999988776 221 23678889999999999863
No 202
>PF15063 TC1: Thyroid cancer protein 1
Probab=48.05 E-value=2.9 Score=30.20 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=34.6
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeE---EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQ---EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~---~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.++- +.||=.+++. +.|+.+|++-|..+ .++|+.. .-.++|+..+||..|
T Consensus 25 ~RKkasaNIFe~vn~---~qlqrLF~~sGD~kAEeRA~iI~~------------~~~d~ee~a~AL~~L 78 (79)
T PF15063_consen 25 SRKKASANIFENVNL---DQLQRLFQKSGDKKAEERARIIWE------------CAQDPEEKARALMAL 78 (79)
T ss_pred HhhhhhhhhhhccCH---HHHHHHHHHccchhHHHHHHHHHh------------hCCCHHHHHHHHHhc
Confidence 3445 8888889998 99999999998753 3444432 224667677777664
No 203
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=47.74 E-value=27 Score=26.50 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=42.5
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCC-CCCcccEEEEEEcC--HHHHHHHHHHcCCCc-cCCceeEE
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHS-TSRSRGFGFITFDT--EQAVDDLLAKGNKLE-LAGAQVEV 95 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~-tg~~rG~aFV~F~s--~e~a~~Ai~~lng~~-l~g~~i~V 95 (279)
+| |+ .|.+...+.++.|.++|++...|..+.|..-.. ...+.=+-.|+|+. .+.+-++|..+.... -++..|.+
T Consensus 7 ~v~l~-~P~~~p~~l~~aL~~~~~~~~~V~~Ayl~~~~~~~~~~~~li~vd~~~~~~~~~~~~i~~~~~~~~~~~~~vd~ 85 (108)
T PF14581_consen 7 KVLLG-EPEEEPTDLLAALSEYFKQHKNVRAAYLALMQDEDEQPSLLIGVDFDGEDIEEIFQEIGRAARPYLPDGWPVDF 85 (108)
T ss_pred EEEec-CCccCHHHHHHHHHHHHhhCccHHHhHHHHhhccCCCceEEEEEeccChhHHHHHHHHHHHhhhcCCCCceEEE
Confidence 44 43 333333334478999999999998776554333 44444455567766 233333333322222 23466666
Q ss_pred eeccC
Q 023632 96 KKAEP 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
.....
T Consensus 86 ~~~~~ 90 (108)
T PF14581_consen 86 VLLDD 90 (108)
T ss_pred EEccC
Confidence 55543
No 204
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=47.66 E-value=16 Score=32.93 Aligned_cols=33 Identities=9% Similarity=-0.036 Sum_probs=23.5
Q ss_pred ceeeeCCCCCCCcccHHHHHHHHhcCCCeEEEEEee
Q 023632 20 QKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMR 55 (279)
Q Consensus 20 ~~lV~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~ 55 (279)
.+||.|||.++|. .-|.++++..-.+.++.+|.
T Consensus 97 ~~vVaNlPY~Iss---pii~kll~~~~~~~~~v~M~ 129 (259)
T COG0030 97 YKVVANLPYNISS---PILFKLLEEKFIIQDMVLMV 129 (259)
T ss_pred CEEEEcCCCcccH---HHHHHHHhccCccceEEEEe
Confidence 4449999999998 88888887654554444443
No 205
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.40 E-value=80 Score=20.75 Aligned_cols=45 Identities=7% Similarity=0.152 Sum_probs=25.5
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
.+|-++|.+++ .|..+.+..... ..+....|+.++.+++.++|++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~--~~~~~v~~~ve~~~~~~~~L~~ 59 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKK--GGKALLIFRTEDIEKAIEVLQE 59 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCC--CCeEEEEEEeCCHHHHHHHHHH
Confidence 56777777775 465555433221 1233445556677777777776
No 206
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=47.27 E-value=50 Score=23.22 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=35.4
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHH
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 82 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~a~~Ai~~ 82 (279)
.+| |.++.-.--. ..+++.++....|.++++-.+. +.++|+|++ .++...||+.
T Consensus 4 ~~l~v~~MtC~~C~---~~V~~al~~v~gv~~v~v~l~~------~~~~V~~d~~~~~~~~i~~ai~~ 62 (71)
T COG2608 4 TTLKVEGMTCGHCV---KTVEKALEEVDGVASVDVDLEK------GTATVTFDSNKVDIEAIIEAIED 62 (71)
T ss_pred EEEEECCcCcHHHH---HHHHHHHhcCCCeeEEEEEccc------CeEEEEEcCCcCCHHHHHHHHHH
Confidence 344 5555444444 7788888888778888887663 348999987 3444445444
No 207
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.50 E-value=43 Score=32.92 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=46.5
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
|+||+.-.....-..|.++=++||+|-.++|-..+ .|...+.+.|+.|+.. |..++.+|+.
T Consensus 37 IGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~~---------~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 37 IGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSVP---------VVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred cccHHHcCCCchhHHHHHHHHHhCCeEEEEecCce---------EEEECCHHHHHHHHHh-CCccccCCCC
Confidence 88887655431125667777799999988875432 6888999999999999 7888888875
No 208
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=46.32 E-value=64 Score=27.73 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc-CCCccC--CceeEEe
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELA--GAQVEVK 96 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l-ng~~l~--g~~i~V~ 96 (279)
++.+++++++..-. +.|..|- -..+-+.+..++.++|.+||+.+ ....+. +.+|.|+
T Consensus 27 ~~A~~~l~~~~~p~-~ViKadG---la~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 27 EEALEYLEEQGYPY-VVIKADG---LAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp HHHHHHHHHHSSSE-EEEEESS---SCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred HHHHHHHHhcCCCc-eEEccCC---CCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 77777777665423 3444443 22333456669999999999875 333433 4455554
No 209
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=45.58 E-value=49 Score=26.16 Aligned_cols=55 Identities=15% Similarity=0.373 Sum_probs=29.7
Q ss_pred cee-eeCCCC---CCCcccHHHHHHHHhc-CCCeEEEEEe----ecCCCCCcccEEEEEEcCHHHHHH
Q 023632 20 QKM-TGLSLT---PVTEPALDEFKDFFMQ-FGDVQEHQIM----RDHSTSRSRGFGFITFDTEQAVDD 78 (279)
Q Consensus 20 ~~l-V~nLp~---~~te~~~~~L~~~F~~-~G~V~~v~i~----~d~~tg~~rG~aFV~F~s~e~a~~ 78 (279)
+.+ |.-|.+ +++. +||+|-+++ |-.-.++.++ ..--.+++.+||.| |++.|.|.+
T Consensus 21 KqmvvdvlHPG~a~vsK---~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 21 KQMVVDVLHPGKANVSK---TEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred hheeEEEecCCCCCCCH---HHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 344 444443 4555 777766544 2222233333 33346888899976 676666543
No 210
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=45.35 E-value=22 Score=33.59 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=40.7
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCC-eEEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGD-VQEHQIMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~-V~~v~i~~d~~t--g~~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
+.| |..||...++ ++|.+.+..|=. |.-+.+.....+ ......|+|.|..++++..-...++++.+
T Consensus 8 ~Kvv~rrlpp~l~~---~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTE---EQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccH---HHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 455 9999999999 777766555421 111111111111 11246799999999998777777777544
No 211
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=45.31 E-value=48 Score=30.00 Aligned_cols=44 Identities=14% Similarity=0.285 Sum_probs=32.1
Q ss_pred ccHHHHHHHHhcCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 33 PALDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 33 ~~~~~L~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+||.-|++.|++++ .|+.+ .+..-|.-||-+.+++++++.|+.|
T Consensus 40 ed~~i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~~~~~~~~l 85 (268)
T TIGR01743 40 EDIVIIKETFEKFGIGKLLTV-------PGAAGGVKYIPKMSQAEAEEFVEEL 85 (268)
T ss_pred hhHHHHHHHHHhcCCceEEEe-------CCCCCCeEEEeCCCHHHHHHHHHHH
Confidence 47788999998764 45544 5666777888888888877777655
No 212
>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]. The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=45.28 E-value=23 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=21.0
Q ss_pred EEEcCHHHHHHHHHHcCCCccCCceeEEeecc
Q 023632 68 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 68 V~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~ 99 (279)
.+|.|.++++.||.... ......++|....
T Consensus 8 ~~F~~~~e~k~av~~ya--i~~~~~~~v~ksd 37 (67)
T PF03108_consen 8 QTFPSKEEFKEAVREYA--IKNGFEFKVKKSD 37 (67)
T ss_pred CEECCHHHHHHHHHHHH--HhcCcEEEEeccC
Confidence 37999999999998852 3345556665544
No 213
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.20 E-value=95 Score=21.00 Aligned_cols=45 Identities=7% Similarity=0.160 Sum_probs=25.2
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEc--CHHHHHHHHHH
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFD--TEQAVDDLLAK 82 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~--s~e~a~~Ai~~ 82 (279)
.+|.++|.+++ .|.++..... ........+|.++ +.+++.++|++
T Consensus 16 ~~i~~~l~~~~inI~~i~~~~~--~~~~~~~v~i~v~~~~~~~~~~~L~~ 63 (72)
T cd04883 16 ADIAAIFKDRGVNIVSVLVYPS--KEEDNKILVFRVQTMNPRPIIEDLRR 63 (72)
T ss_pred HHHHHHHHHcCCCEEEEEEecc--CCCCeEEEEEEEecCCHHHHHHHHHH
Confidence 66778888775 4666644332 1222334445554 55566666666
No 214
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=44.86 E-value=37 Score=25.66 Aligned_cols=48 Identities=13% Similarity=0.085 Sum_probs=28.5
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEE--eecCCCCCcccEEEEEE
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQI--MRDHSTSRSRGFGFITF 70 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i--~~d~~tg~~rG~aFV~F 70 (279)
+.+||.++.+..++.++++|.++.+-.+|.+ ..........|++.+.+
T Consensus 15 ~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 15 VAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 7899999998555666777777654444433 22334555666655433
No 215
>PRK09213 pur operon repressor; Provisional
Probab=44.41 E-value=48 Score=30.06 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhcCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 33 PALDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 33 ~~~~~L~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+||.-|++.|++.+ .|+.+ ++..-|.-||-+.++++|+..++.|
T Consensus 42 ed~~i~~~~~~~~~~g~~~t~-------~ga~ggv~~~p~~~~~~a~~~~~~L 87 (271)
T PRK09213 42 EDLVIIKETFEKQGIGTLETV-------PGAAGGVKYIPSISEEEAREFVEEL 87 (271)
T ss_pred hhHHHHHHHHHhcCCceEEEe-------CCCCCCeEEEcCCCHHHHHHHHHHH
Confidence 57788999998764 45544 5666778888888888888877665
No 216
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=44.02 E-value=89 Score=23.17 Aligned_cols=44 Identities=2% Similarity=-0.011 Sum_probs=32.3
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+.++++++++| +|+++.+..- ..--...+++.|.++|.++.-.+
T Consensus 23 ~a~~~~~e~~Gg~l~~~y~t~G----~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 23 EAVRALIEALGGKLKSFYWTLG----EYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHcCCEEEEEEEecC----CCCEEEEEEcCCHHHHHHHHHHH
Confidence 67788888775 6777777643 34457888999999888777554
No 217
>PLN02373 soluble inorganic pyrophosphatase
Probab=43.86 E-value=17 Score=31.06 Aligned_cols=36 Identities=14% Similarity=0.293 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++|+++|+.|-.++ . |-+.+..|.+.++|.++|++.
T Consensus 139 ~~I~~fF~~YK~le------g------K~v~v~g~~~~~~A~~~I~~~ 174 (188)
T PLN02373 139 AEIRRFFEDYKKNE------N------KEVAVNDFLPAEAAIEAIQYS 174 (188)
T ss_pred HHHHHHHHHhcccC------C------CeEEeCCccCHHHHHHHHHHH
Confidence 78899999884322 1 124567888999999888764
No 218
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=43.43 E-value=89 Score=20.18 Aligned_cols=42 Identities=14% Similarity=0.311 Sum_probs=27.4
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 80 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai 80 (279)
.+|-++|.+.+ .|..+.+.... ..+....+++++.+.|.++|
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~---~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETR---GEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEcc---CCcEEEEEEECCHHHHHHHh
Confidence 55667776664 56666655432 34557778888877777765
No 219
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=43.22 E-value=57 Score=23.33 Aligned_cols=42 Identities=19% Similarity=0.467 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
.+++ .+.+||.|.-+. .+.+ |+ |.|.|.+++++.+++|....
T Consensus 12 k~~r-~L~kfG~i~Y~S-------kk~k-Yv-vlYvn~~~~e~~~~kl~~l~ 53 (71)
T PF09902_consen 12 KDAR-QLRKFGDIHYVS-------KKMK-YV-VLYVNEEDVEEIIEKLKKLK 53 (71)
T ss_pred HhHH-hHhhcccEEEEE-------CCcc-EE-EEEECHHHHHHHHHHHhcCC
Confidence 3444 457899987762 2222 44 56889999999999986543
No 220
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=43.05 E-value=2.1e+02 Score=24.47 Aligned_cols=11 Identities=9% Similarity=0.247 Sum_probs=4.2
Q ss_pred eeEEeeccCCC
Q 023632 92 QVEVKKAEPKK 102 (279)
Q Consensus 92 ~i~V~~a~~~~ 102 (279)
.|-|+.-.|+.
T Consensus 132 llPl~RFLP~p 142 (215)
T KOG3262|consen 132 LLPLDRFLPQP 142 (215)
T ss_pred cCcHhhcCCCC
Confidence 33333333433
No 221
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=42.63 E-value=92 Score=21.98 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=29.7
Q ss_pred HHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHHcCC
Q 023632 35 LDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAKGNK 85 (279)
Q Consensus 35 ~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~---s~e~a~~Ai~~lng 85 (279)
|.++.++|++++ .|..+.....+ .....=.-||+++ +.++++++|+.|..
T Consensus 15 L~~il~~f~~~~ini~~i~s~p~~-~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 15 LYDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHCCcCEEEEEEEEcC-CCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 367888888885 46666443332 2222234456666 35677788887654
No 222
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.24 E-value=1.2e+02 Score=21.47 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=27.1
Q ss_pred HHHHHHHHhcCC-CeEEEEEeecCCC-CCcccEEEEEEc-CHHHHHHHHHHcCC
Q 023632 35 LDEFKDFFMQFG-DVQEHQIMRDHST-SRSRGFGFITFD-TEQAVDDLLAKGNK 85 (279)
Q Consensus 35 ~~~L~~~F~~~G-~V~~v~i~~d~~t-g~~rG~aFV~F~-s~e~a~~Ai~~lng 85 (279)
|.++.++|++++ .+..| ..-+.. ....=.-||+++ +.+.+++||+.|..
T Consensus 14 L~~iL~~f~~~~inl~~I--eSRP~~~~~~~y~F~id~e~~~~~i~~~l~~l~~ 65 (74)
T cd04929 14 LAKALKLFQELGINVVHI--ESRKSKRRSSEFEIFVDCECDQRRLDELVQLLKR 65 (74)
T ss_pred HHHHHHHHHHCCCCEEEE--EeccCCCCCceEEEEEEEEcCHHHHHHHHHHHHH
Confidence 367778888875 23443 322211 111224567776 44577888887743
No 223
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=41.48 E-value=93 Score=23.40 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=34.3
Q ss_pred CCCCCCcccH----HHHHHHHhcCC-CeEEEEEeecC-----CCCCccc-EEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 26 SLTPVTEPAL----DEFKDFFMQFG-DVQEHQIMRDH-----STSRSRG-FGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 26 Lp~~~te~~~----~~L~~~F~~~G-~V~~v~i~~d~-----~tg~~rG-~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
|.++++++++ +.+++++.+.+ +|.++...=.+ ..+..++ |.++.|+-..++-+.|+.. ..|+...|+
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~--lri~e~VlR 91 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKA--LKLDENVLR 91 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHH--hCCCCCeEE
Confidence 5566666222 33444555544 56555421111 1344556 5778888666666666542 345555544
No 224
>KOG3499 consensus 60S ribosomal protein L38 [Translation, ribosomal structure and biogenesis]
Probab=41.46 E-value=1e+02 Score=21.43 Aligned_cols=49 Identities=14% Similarity=0.312 Sum_probs=29.7
Q ss_pred HHHHHHHHhc--CCCeEEEEEeecCCCCCcc--c----EEEEEEcCHHHHHHHHHHcC
Q 023632 35 LDEFKDFFMQ--FGDVQEHQIMRDHSTSRSR--G----FGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 35 ~~~L~~~F~~--~G~V~~v~i~~d~~tg~~r--G----~aFV~F~s~e~a~~Ai~~ln 84 (279)
|.||++|+.. -...+.++|.++++.-+.+ + |- ++..|.+.|++.++.|.
T Consensus 5 i~eiK~FL~~arR~Da~s~kiKkn~~~~KFKvRcsryLYT-Lvv~D~~KAeKlkQSLP 61 (69)
T KOG3499|consen 5 ITEIKDFLLTARRKDAKSVKIKKNKNNVKFKVRCSRYLYT-LVVADAEKAEKLKQSLP 61 (69)
T ss_pred HHHHHHHHHHHHhcccceeEEEecCCceeEEEEeeeeeee-eeeccHHHHHHHHhcCC
Confidence 4567777753 3567778887776544433 1 22 23456777888777764
No 225
>PRK12866 YciI-like protein; Reviewed
Probab=41.29 E-value=1.5e+02 Score=22.22 Aligned_cols=31 Identities=13% Similarity=0.093 Sum_probs=22.0
Q ss_pred EEEEEEcCHHHHHHHHHHcCCCccCCc--eeEEe
Q 023632 65 FGFITFDTEQAVDDLLAKGNKLELAGA--QVEVK 96 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~lng~~l~g~--~i~V~ 96 (279)
+-.++++|.++|++.|+. +.....+- .++|.
T Consensus 51 ~ii~~a~s~~e~~~~l~~-DPf~~~gl~~~~~I~ 83 (97)
T PRK12866 51 VLVFEGDSPAAAEAFARA-DPYVRNGLVKSWRVR 83 (97)
T ss_pred EEEEEeCCHHHHHHHHHc-CChhhcCCEEEEEEE
Confidence 444588999999998888 66666665 35553
No 226
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=41.02 E-value=19 Score=33.62 Aligned_cols=47 Identities=17% Similarity=0.303 Sum_probs=36.5
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
..|.+++.+.+.|.+-+|.+- .+-|.+||....+++++++++.|+..
T Consensus 276 p~iF~~i~~~G~v~~~EM~rt----FNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 276 PPIFKWLQKAGNVEREEMYRT----FNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred cHHHHHHHHhcCCCHHHHHHH----hcCccceEEEEcHHHHHHHHHHHHhc
Confidence 447778888898876665543 34678899999999999999998764
No 227
>PLN02707 Soluble inorganic pyrophosphatase
Probab=40.94 E-value=21 Score=32.21 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEE-EEcCHHHHHHHHHHcC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI-TFDTEQAVDDLLAKGN 84 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV-~F~s~e~a~~Ai~~ln 84 (279)
++|+++|+.|-..+ . +..+-|+|+ +|.+.+.|.++|++.+
T Consensus 208 ~~I~~fF~~YK~~e------G---K~~n~~~~~~~~~~~~~A~~vI~e~~ 248 (267)
T PLN02707 208 TAIRDWFRDYKIPD------G---KPANKFGLDNKPMDKDYALKVIEETN 248 (267)
T ss_pred HHHHHHHHHhcCCC------C---CceeeccccCCcCCHHHHHHHHHHHH
Confidence 67888888773221 1 111225555 7999999999998754
No 228
>PRK10905 cell division protein DamX; Validated
Probab=40.78 E-value=55 Score=30.37 Aligned_cols=47 Identities=2% Similarity=0.171 Sum_probs=30.2
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEE--EEcCHHHHHHHHHHcC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFI--TFDTEQAVDDLLAKGN 84 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV--~F~s~e~a~~Ai~~ln 84 (279)
+.|++|..+.+ +....+......++.. |-.| .|.+.++|++||+.|.
T Consensus 259 ~~l~~fakKlg-L~~y~vy~TtRnGkpW-YVV~yG~YaSraeAk~AiakLP 307 (328)
T PRK10905 259 DNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKRAVSTLP 307 (328)
T ss_pred HHHHHHHHHcC-CCceEEEEeccCCceE-EEEEecCCCCHHHHHHHHHHCC
Confidence 67788777774 4544454443334321 3222 6899999999999984
No 229
>PRK03670 competence damage-inducible protein A; Provisional
Probab=40.61 E-value=59 Score=29.06 Aligned_cols=75 Identities=13% Similarity=0.148 Sum_probs=35.0
Q ss_pred Ccchhhh-hhhhhcCCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCC-CCCcccEEEEEEcCHHHHH
Q 023632 1 MKELLTE-ILTMFINRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHS-TSRSRGFGFITFDTEQAVD 77 (279)
Q Consensus 1 mk~~~~~-~~~~~~~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~-tg~~rG~aFV~F~s~e~a~ 77 (279)
||.|+++ ....+.......+.+ |.++|+..-. ..|+++-++| . |+|-.-+. .++ +----|.=++++.++
T Consensus 164 ~~~M~~~~v~p~l~~~~~~~~~~~~~~~~Es~la---~~l~~~~~~~-~---v~igSyP~~~~~-~~~l~~~g~~~~~~~ 235 (252)
T PRK03670 164 MKAMLEKEVLPRLGERKFVQKKFLAEITDESKLA---PILEEALERF-N---VKIHSSPKGFGK-YIGIIIFAEDEEEIE 235 (252)
T ss_pred HHHHHHHHHHHhhccCCeEEEEEEeCCCCHHHHH---HHHHHHHHHC-C---ceEecCCCCCCC-cEEEEEEECCHHHHH
Confidence 4555555 222222222223344 5555543333 4555565566 2 33433332 111 112223335788888
Q ss_pred HHHHHc
Q 023632 78 DLLAKG 83 (279)
Q Consensus 78 ~Ai~~l 83 (279)
+|+++|
T Consensus 236 ~a~~~l 241 (252)
T PRK03670 236 KAVEFM 241 (252)
T ss_pred HHHHHH
Confidence 888876
No 230
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.48 E-value=1.5e+02 Score=21.97 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=30.9
Q ss_pred eeeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCc-ccEEEEEEc--CHHHHHHHHHHcC
Q 023632 22 MTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRS-RGFGFITFD--TEQAVDDLLAKGN 84 (279)
Q Consensus 22 lV~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~-rG~aFV~F~--s~e~a~~Ai~~ln 84 (279)
||-.|+..... |.++.++|+.++ |.-++|..-+...+. .=.=||+|+ +.+.+++||+.|.
T Consensus 17 lif~l~~~pGs--L~~vL~~Fa~~~-INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 17 LIFSLKEEVGA--LAKVLRLFEEKD-INLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred EEEEcCCCCcH--HHHHHHHHHHCC-CCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 34455554433 366777888875 333333333221221 113467776 3456677777763
No 231
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=40.34 E-value=1.2e+02 Score=20.91 Aligned_cols=48 Identities=13% Similarity=0.142 Sum_probs=28.5
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHHcC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAKGN 84 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s---~e~a~~Ai~~ln 84 (279)
.++.++|++++ .|.+|.-...+ .....-.-||+++. .+.++++++.|.
T Consensus 14 ~~vL~~f~~~~vni~~I~Srp~~-~~~~~~~f~id~~~~~~~~~~~~~l~~l~ 65 (75)
T cd04880 14 AKALKVFAERGINLTKIESRPSR-KGLWEYEFFVDFEGHIDDPDVKEALEELK 65 (75)
T ss_pred HHHHHHHHHCCCCEEEEEeeecC-CCCceEEEEEEEECCCCCHHHHHHHHHHH
Confidence 67788888875 45555332222 22233356788873 566777887764
No 232
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=40.22 E-value=23 Score=30.72 Aligned_cols=39 Identities=8% Similarity=0.332 Sum_probs=26.4
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++|+++|..|=.++. ...+-+.+..+.+.++|.++|++.
T Consensus 158 ~~I~~fF~~YK~leg---------k~~k~~~~~g~~~~~~A~~vI~~~ 196 (205)
T PRK00642 158 DRLQHYFLTYKATPG---------ELIKGVEIVGIYGKEEAQKVIQLA 196 (205)
T ss_pred HHHHHHHHHHcCccc---------CCCCeEEECCCcCHHHHHHHHHHH
Confidence 788889988743221 111336677788999999988764
No 233
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=40.22 E-value=1.5e+02 Score=21.91 Aligned_cols=58 Identities=7% Similarity=0.171 Sum_probs=39.0
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEE-cCHHHHHHHHHHcCCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLAKGNKL 86 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F-~s~e~a~~Ai~~lng~ 86 (279)
|.|-|--+ ..+..+|++-+ .|+++.+-...+.+-+| +-+|.- .+++.+++.+++|+..
T Consensus 9 VeN~~GVL-----~Rit~lFsRRg~NI~SLtvg~Te~~~iSR-mtivv~~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 9 VADQVSTL-----NRITSAFVRLQYNIDTLHVTHSEQPGISN-MEIQVDIQDDTSLHILIKKLKQQ 68 (84)
T ss_pred EECCCCHH-----HHHHHHHhccCcCeeeEEecccCCCCceE-EEEEEeCCCHHHHHHHHHHHhCC
Confidence 55655444 45788898765 57777665443344444 566665 7899999999998653
No 234
>COG3012 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.02 E-value=60 Score=26.56 Aligned_cols=67 Identities=12% Similarity=0.161 Sum_probs=36.9
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHHcCC-CccCCceeEEeeccCCCCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAKGNK-LELAGAQVEVKKAEPKKPN 104 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~---s~e~a~~Ai~~lng-~~l~g~~i~V~~a~~~~~~ 104 (279)
++|.+-|..- +..-++|+..... ..+-.+||+|. +.++-..|+++... ..|+++.+.|+-..++..+
T Consensus 64 ~~l~~~~~~t-~wlGL~I~~h~~~-~~~~~~~VeF~A~f~~~~~~~a~~ErSrFvk~ngrWyyiDgtv~~~gr 134 (151)
T COG3012 64 AELIAGFAHT-EWLGLTIIEHTGL-GAPNHGFVEFVARFKGGGKTGAHHERSRFVKINGRWYYIDGTVPPLGR 134 (151)
T ss_pred hHhhcccccc-eEeeEEEEEeccC-CCCcceeEEEEEEEccCCccchhhhhhhheEECCEEEEECCCCCcccC
Confidence 4555444321 2344555554322 22457888885 33334455555443 5788999999877774433
No 235
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=39.88 E-value=43 Score=25.56 Aligned_cols=47 Identities=11% Similarity=0.335 Sum_probs=25.6
Q ss_pred CCCcccHHHHHHHH-hcCCCeEEEEEeecCC----CCCcccEEEEEEcCHHHHHHH
Q 023632 29 PVTEPALDEFKDFF-MQFGDVQEHQIMRDHS----TSRSRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 29 ~~te~~~~~L~~~F-~~~G~V~~v~i~~d~~----tg~~rG~aFV~F~s~e~a~~A 79 (279)
+.+. .+|++.+ +.+..=.++.|+..-. .+++.+||.| |+|.+.|++.
T Consensus 30 tpsr---~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSR---KDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCH---HHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 4555 6666555 3444333444443332 4567777765 7777766543
No 236
>CHL00030 rpl23 ribosomal protein L23
Probab=39.57 E-value=23 Score=26.77 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=21.3
Q ss_pred ceeeeCCCCCCCcccHHHHHHHHhc-CC-CeEEEEEee
Q 023632 20 QKMTGLSLTPVTEPALDEFKDFFMQ-FG-DVQEHQIMR 55 (279)
Q Consensus 20 ~~lV~nLp~~~te~~~~~L~~~F~~-~G-~V~~v~i~~ 55 (279)
++++--++.+.+. .+|++.+++ |+ +|+.|..+.
T Consensus 20 n~y~F~V~~~anK---~eIK~avE~lf~VkV~~VNt~~ 54 (93)
T CHL00030 20 NQYTFDVDSGSTK---TEIKHWIELFFGVKVIAVNSHR 54 (93)
T ss_pred CEEEEEECCCCCH---HHHHHHHHHHhCCeEEEEEEEE
Confidence 4445556788888 888888876 33 456665443
No 237
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=39.40 E-value=82 Score=22.15 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=31.8
Q ss_pred CcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 31 TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 31 te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
++.|.+.|.+.+...|+|.......+ ---|+.++..+++..+..+ -+.|+-.+|++
T Consensus 9 ~~kd~~lL~eELgnLG~v~~~~~~~~--------~l~~~L~T~~s~DDI~AV~-CFVid~dQI~i 64 (65)
T PF09078_consen 9 KEKDVDLLLEELGNLGTVSDQEKGGD--------SLEVWLETSVSADDIIAVC-CFVIDPDQISI 64 (65)
T ss_dssp -TTHHHHHHHHHHHHS--EEEEEESS--------EEEEEE-STSSHHHHHHHH-TTTS-GGGEEE
T ss_pred CHHHHHHHHHHHhcCccEEEEecCCC--------eEEEEECCCCChhhEEEEE-EEEEcHHHeEE
Confidence 34455778889999999988765443 2335555655566555554 35666666655
No 238
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=39.36 E-value=54 Score=24.18 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITFDT 72 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F~s 72 (279)
+|.+|+|..-...++.++||=|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888888776668999999999987
No 239
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=39.15 E-value=1.4e+02 Score=22.55 Aligned_cols=66 Identities=11% Similarity=0.145 Sum_probs=35.6
Q ss_pred CCCCCCCcccHHHHHHHHh-cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 25 LSLTPVTEPALDEFKDFFM-QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F~-~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
-|+.+++. .+|+...+ .+..-..+.|...-. .... -+.|...+.|+++..|++.+...-.-.+|+|
T Consensus 28 ~V~r~~s~---~el~~kl~~~~~~~~~~~lky~Lp-~edl-d~Lisv~~DeDl~~M~~e~~~~~~~~~rirv 94 (97)
T cd06410 28 SVDRSISF---KELVSKLSELFGAGVVVTLKYQLP-DEDL-DALISVSNDEDLKNMMEEYDRLSGGSARLRV 94 (97)
T ss_pred EEcCCCCH---HHHHHHHHHHhCCCCceEEEEEcC-CCCc-ceeEEecCcHHHHHHHHhhccccCCCceEEE
Confidence 35667777 55554443 232212122222211 1112 2789999999999999986654333334444
No 240
>PRK12865 YciI-like protein; Reviewed
Probab=38.89 E-value=1.6e+02 Score=21.87 Aligned_cols=32 Identities=28% Similarity=0.366 Sum_probs=21.9
Q ss_pred cEEEEEEcCHHHHHHHHHHcCCCccCCc--eeEEe
Q 023632 64 GFGFITFDTEQAVDDLLAKGNKLELAGA--QVEVK 96 (279)
Q Consensus 64 G~aFV~F~s~e~a~~Ai~~lng~~l~g~--~i~V~ 96 (279)
++-.|+.+|.++|++.++. +.....+. .++|+
T Consensus 53 ~~~i~~a~s~e~a~~~~~~-DP~~~~g~~~~v~I~ 86 (97)
T PRK12865 53 SLVIVKAETKEAAKALADA-DPYAKAGLFESVEVK 86 (97)
T ss_pred EEEEEEcCCHHHHHHHHHc-CCchhcCCeeEEEEE
Confidence 3556688999999988887 55554542 45554
No 241
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=38.74 E-value=58 Score=28.00 Aligned_cols=44 Identities=16% Similarity=0.357 Sum_probs=34.5
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
.|.-|.+++|+ +.|.++|+|.+.|++ +++.+....|+|...++.
T Consensus 36 ~l~PVlF~rdK----------~I~qs~e~ai~~lE~-e~KlWreteI~I~~g~p~ 79 (238)
T PF10915_consen 36 NLQPVLFVRDK----------IIFQSAEDAIRILEE-EGKLWRETEIKIQSGKPS 79 (238)
T ss_pred CCCceeeecch----------hhccCHHHHHHHHHH-hcchheeeeEEEecCCcc
Confidence 56677778886 689999999999988 677777777887766654
No 242
>PRK12864 YciI-like protein; Reviewed
Probab=38.70 E-value=1.6e+02 Score=21.65 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=20.9
Q ss_pred ccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 63 RGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
..+..|+++|.++|++.|+. +.....+-
T Consensus 49 g~~~i~~a~s~eea~~~~~~-DPy~~aGl 76 (89)
T PRK12864 49 YVFGIFEAEDEETVRQLIEA-DPYWQNGI 76 (89)
T ss_pred CEEEEEEeCCHHHHHHHHHc-CCchhcCC
Confidence 34556689999999988887 66666665
No 243
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=38.31 E-value=46 Score=31.78 Aligned_cols=55 Identities=18% Similarity=0.283 Sum_probs=40.0
Q ss_pred eeCCCCCCCcccHHHHHHHHh----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 81 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~----~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~ 81 (279)
+..|-.+-|- -+|+.+|- ..|.|+.|.|+..+. -++.-.||+-.++-+++++++.
T Consensus 229 ~~slRKDNTg---ydlkhLFIGSEGtlGVvT~vSil~~~k-pksvn~af~gi~sf~~v~k~fv 287 (511)
T KOG1232|consen 229 LSSLRKDNTG---YDLKHLFIGSEGTLGVVTKVSILAPPK-PKSVNVAFIGIESFDDVQKVFV 287 (511)
T ss_pred hhhhcccCcc---ccchhheecCCceeeEEeeEEEeecCC-CcceeEEEEccccHHHHHHHHH
Confidence 4455556666 78899983 457788999887763 3445589998899988888663
No 244
>COG4029 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.07 E-value=2.1e+02 Score=22.88 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=20.7
Q ss_pred ccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 63 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+|+.+.--.++++.++++.+. +++...|.+
T Consensus 38 TCfGaii~G~Ed~v~klveriR--~~d~~~IF~ 68 (142)
T COG4029 38 TCFGAIIDGPEDEVRKLVERIR--ELDGNAIFS 68 (142)
T ss_pred eeeeeeecCcHHHHHHHHHHHH--HhccCceee
Confidence 5677777778888888888753 344444443
No 245
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=37.80 E-value=85 Score=25.72 Aligned_cols=54 Identities=7% Similarity=0.106 Sum_probs=31.6
Q ss_pred ceeeeCCCCCCCcccHHHHHHHHhc-CC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 023632 20 QKMTGLSLTPVTEPALDEFKDFFMQ-FG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 20 ~~lV~nLp~~~te~~~~~L~~~F~~-~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~A 79 (279)
+++|--++...+. .+|++.+++ |. +|..|..+.-+. +. -=|||++...++|...
T Consensus 83 N~yvF~Vd~kAnK---~qIK~AVEklf~VkV~kVNTli~p~-g~--KKA~V~L~~~~~aidv 138 (145)
T PTZ00191 83 NTLVFIVDQRANK---TQIKKAVEKLYDVKVVKVNTLITPD-GL--KKAYIRLSPDVDALDV 138 (145)
T ss_pred CEEEEEEcCCCCH---HHHHHHHHHHhCCeeEEEEeEEcCC-Cc--eEEEEEECCCCcHHHH
Confidence 3445556677888 778877766 33 455665444332 11 1489999766654433
No 246
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=37.52 E-value=61 Score=26.98 Aligned_cols=34 Identities=18% Similarity=0.357 Sum_probs=24.7
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeec
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRD 56 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d 56 (279)
..|++...-..|++.|.++++++|.|+.-++..+
T Consensus 31 ~~Nv~~~~~~~d~~~i~~~ls~~G~i~~~R~Y~~ 64 (160)
T TIGR00288 31 GPNMLRKEFNIDLDEIREILSEYGDIKIGKVLLN 64 (160)
T ss_pred CCccChhhhccCHHHHHHHHHhcCCeEEEEEEec
Confidence 5588765433445889999999999877766655
No 247
>PRK11611 enhanced serine sensitivity protein SseB; Provisional
Probab=37.42 E-value=24 Score=31.54 Aligned_cols=80 Identities=5% Similarity=0.167 Sum_probs=42.4
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH---c-CCCccCCceeE
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK---G-NKLELAGAQVE 94 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~---l-ng~~l~g~~i~ 94 (279)
..| |+ .|.+...+-++.|+++|+++-.|+...|+.-++....+-.-.|.++...+.+..|.. + .....++..|.
T Consensus 130 ~~v~lg-~p~~~P~~lv~~L~~lf~~~k~V~rAyL~~~~~~~d~~p~LLI~le~~~d~e~ii~~ag~~a~~~l~~d~~ID 208 (246)
T PRK11611 130 ESLLLS-EVAEPPAQMIDSLTTLFKTIKPVKRAFLASIKENADAQPNLLIGIEADGDIEEIIQAAGSVATDTLPGDEPID 208 (246)
T ss_pred CEEEec-CCccchHHHHHHHHHHHhhcchHHHHHHHHHhccCCCCCceEEEEecCCCHHHHHHHHhHHHHHhCCCCCcee
Confidence 444 44 333433334478999999999887754332222112222233433333333444544 2 22445688888
Q ss_pred EeeccC
Q 023632 95 VKKAEP 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|....+
T Consensus 209 i~~v~~ 214 (246)
T PRK11611 209 ICQVKE 214 (246)
T ss_pred EEEecC
Confidence 887765
No 248
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.78 E-value=31 Score=30.09 Aligned_cols=13 Identities=54% Similarity=0.807 Sum_probs=10.4
Q ss_pred CcccEEEEEEcCH
Q 023632 61 RSRGFGFITFDTE 73 (279)
Q Consensus 61 ~~rG~aFV~F~s~ 73 (279)
.+|-|+||+|++.
T Consensus 107 ~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 107 ASRPYAFIEFDTF 119 (216)
T ss_pred cCCCeeEEehhHH
Confidence 4577999999865
No 249
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=36.71 E-value=1.2e+02 Score=19.85 Aligned_cols=47 Identities=9% Similarity=0.227 Sum_probs=25.0
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCH-HHHHHHHHHcC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTE-QAVDDLLAKGN 84 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~-e~a~~Ai~~ln 84 (279)
.+|.++|.+++ .|.++....++... ....+++++.. +..+++++.|.
T Consensus 15 ~~i~~~l~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 15 NRISGLFARRGFNIESLTVGPTEDPG--ISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred HHHHHHHHhCCCCEEEEEeeecCCCC--eEEEEEEEECCHHHHHHHHHHHh
Confidence 67888888775 45666554331111 12233333322 66777777764
No 250
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=36.44 E-value=2e+02 Score=26.40 Aligned_cols=38 Identities=8% Similarity=0.140 Sum_probs=27.8
Q ss_pred CeEEEEEeecCC--CCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 47 DVQEHQIMRDHS--TSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 47 ~V~~v~i~~d~~--tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.|+.|.|+...+ ...++-||.++|-+...|..+++.|.
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk 212 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLK 212 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHH
Confidence 367788875433 34456799999999998888887664
No 251
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=36.39 E-value=91 Score=23.10 Aligned_cols=59 Identities=8% Similarity=0.090 Sum_probs=34.3
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc--CHHHHHHHHHHcCCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD--TEQAVDDLLAKGNKL 86 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~--s~e~a~~Ai~~lng~ 86 (279)
.-.||+.-- .|++|+...++..+|....-+.++...+.+||-|+ +.++.++.++.|+..
T Consensus 14 ~v~~PE~pG-----al~~F~~~l~~~~nITeF~YR~~~~~~a~vlvgi~v~~~~~~~~l~~~L~~~ 74 (91)
T PF00585_consen 14 AVEFPERPG-----ALKRFLDALGPRNNITEFHYRYSGDDFARVLVGIEVPDAEDLEELIERLKAL 74 (91)
T ss_dssp EEE--BSTT-----HCHHHHHCCSSSE-EEEEEEE-TTTSCSEEEEEEE-SSTHHHHHHHHHHTSS
T ss_pred EEECCCCcc-----HHHHHHHHhCCCceEEEEEEcCCCCCeeeEEEEEEeCCHHHHHHHHHHHHHc
Confidence 334665543 48888888776665544443445556777777665 456667777777543
No 252
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=36.38 E-value=1.3e+02 Score=22.13 Aligned_cols=62 Identities=10% Similarity=0.087 Sum_probs=33.7
Q ss_pred CCCC--CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 25 LSLT--PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 25 nLp~--~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
.|++ ++++ ++|++.+.+.=.+..+.|..--+.+. .|+..+..+.+.||+..+.. ++.|++..
T Consensus 15 ~~~~~~~~~~---~~L~~ev~~rf~l~~f~lKYlDde~e-----~v~lssd~eLeE~~rl~~~~---~~~l~~~v 78 (81)
T cd06396 15 LVSDSENTTW---ASVEAMVKVSFGLNDIQIKYVDEENE-----EVSVNSQGEYEEALKSAVRQ---GNLLQMNV 78 (81)
T ss_pred EecCCCCCCH---HHHHHHHHHHhCCCcceeEEEcCCCC-----EEEEEchhhHHHHHHHHHhC---CCEEEEEE
Confidence 3555 7787 66665554322233443332111222 47778888999999876432 45555543
No 253
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=36.06 E-value=97 Score=24.82 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=25.6
Q ss_pred EEEEEEcCHHHHHHHHHHcCCCccCCceeEEeecc
Q 023632 65 FGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~ 99 (279)
+-+..+.+.+ ...+|..+.++.+.+++|+|..-.
T Consensus 28 ~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 28 FRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred eEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 5666666655 556788888899999999998654
No 254
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=35.99 E-value=13 Score=26.27 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=15.5
Q ss_pred EEEEEEcCHHHHHHHHHHc
Q 023632 65 FGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~l 83 (279)
.+|..|+|.++|..++..+
T Consensus 46 ~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 46 KAFSPFKSAEEALENANAI 64 (67)
T ss_pred hhccCCCCHHHHHHHHHHh
Confidence 5899999998888777664
No 255
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=35.57 E-value=23 Score=31.35 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=27.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEE
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEH 51 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v 51 (279)
.......| +-|||..+++ +.|+++.++++-+..+
T Consensus 36 ~~~eKd~lfl~Nvp~~~te---e~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 36 NSNEKDCLFLVNVPLLSTE---EHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccccceeeecccccccH---HHHHHHHHHhhhhhhe
Confidence 34555667 9999999999 9999999998865543
No 256
>PRK02302 hypothetical protein; Provisional
Probab=35.00 E-value=1e+02 Score=23.10 Aligned_cols=36 Identities=28% Similarity=0.528 Sum_probs=25.5
Q ss_pred HhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 42 F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
+.+||.|.-+. .+.+ |+ |.|.|.++|++.+++|...
T Consensus 23 LrkfG~I~Y~S-------kk~k-Yv-vlYvn~~~~e~~~~kl~~l 58 (89)
T PRK02302 23 LSKYGDIVYHS-------KRSR-YL-VLYVNKEDVEQKLEELSKL 58 (89)
T ss_pred HhhcCcEEEEe-------cccc-EE-EEEECHHHHHHHHHHHhcC
Confidence 47899988762 2222 44 5688999999999988554
No 257
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=34.44 E-value=1.1e+02 Score=24.91 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=25.7
Q ss_pred eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 48 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 48 V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
|.+|.++.. .+||.||+.+..+++..+|+.+..
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 556655543 589999999988999999988754
No 258
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.07 E-value=1.4e+02 Score=19.66 Aligned_cols=48 Identities=10% Similarity=0.072 Sum_probs=24.8
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCC-CCcccEEE--EEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHST-SRSRGFGF--ITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~t-g~~rG~aF--V~F~s~e~a~~Ai~~l 83 (279)
.+|-++|.+.+ .|.++....++.. ....-..+ |+..+.++++++++.|
T Consensus 13 ~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l 64 (73)
T cd04886 13 AKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAAL 64 (73)
T ss_pred HHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHH
Confidence 56667776664 5777765544321 11111233 3335566666666665
No 259
>PF13037 DUF3898: Domain of unknown function (DUF3898)
Probab=33.99 E-value=33 Score=25.52 Aligned_cols=48 Identities=15% Similarity=0.355 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCeEEE--------EEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEH--------QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v--------~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
-+++.+++.||.-..+ .|+....-..-||+.=|+|-.+++.+..|+.+
T Consensus 34 ~~Vk~lLaDfG~~iHiAKv~~RYv~liEgd~~~FEKG~SPVEflkP~~l~~V~eri 89 (91)
T PF13037_consen 34 TTVKGLLADFGETIHIAKVNDRYVLLIEGDSLQFEKGFSPVEFLKPEDLQEVIERI 89 (91)
T ss_pred eehhHHHHhhccceeEEEECCEEEEEEEcceEEEccCCCceeeeCchhHHHHHHHh
Confidence 5678888888864332 22222122234678889999999999999875
No 260
>PTZ00181 60S ribosomal protein L38; Provisional
Probab=33.99 E-value=1.3e+02 Score=22.14 Aligned_cols=50 Identities=10% Similarity=0.219 Sum_probs=30.0
Q ss_pred HHHHHHHHhcC--CCeEEEEEeecCCCCCcc----cEE-EEEEcCHHHHHHHHHHcC
Q 023632 35 LDEFKDFFMQF--GDVQEHQIMRDHSTSRSR----GFG-FITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 35 ~~~L~~~F~~~--G~V~~v~i~~d~~tg~~r----G~a-FV~F~s~e~a~~Ai~~ln 84 (279)
|.||++|+... -..+.|+|.++++.-+.+ .|- -+...|.+.|++..+.|.
T Consensus 5 I~dIK~FL~~arrkDAksvkIKkn~~~tKFKvRcsrYLYTLvv~D~~KA~KlkqSLP 61 (82)
T PTZ00181 5 IKTLKEFLAICSRKDARCVKVKHNPSATKFKVRCSRYLYTLVVADKKKADKIERSIH 61 (82)
T ss_pred HHHHHHHHHHhhccCceEEEeecCCcceEEEEEecceEEEEEeCCHHHHHHHHhcCC
Confidence 46677777544 347778886665433322 121 244567888888877764
No 261
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=33.75 E-value=1.3e+02 Score=19.64 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=25.6
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~l 83 (279)
.+|.++|.+.+ .|..+.+..+... ....++.+. +.+++++++++|
T Consensus 15 ~~v~~~la~~~inI~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 15 ADVTEILADHGINIDSISQSSDKDG---VGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHTTEEEEEEEEEEESST---TEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHeEEEecCCC---ceEEEEEEECCCCCHHHHHHHH
Confidence 56777777775 4666766665432 334444443 455555555554
No 262
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=33.73 E-value=1e+02 Score=22.99 Aligned_cols=33 Identities=9% Similarity=0.042 Sum_probs=20.2
Q ss_pred EEEEEcCHHHHHHHHHHcCCCcc--CCceeEEeec
Q 023632 66 GFITFDTEQAVDDLLAKGNKLEL--AGAQVEVKKA 98 (279)
Q Consensus 66 aFV~F~s~e~a~~Ai~~lng~~l--~g~~i~V~~a 98 (279)
.++-|.+..++..||+.++.+.. ++++|.|...
T Consensus 46 ~a~FfV~D~~tA~aLk~vsrkI~~~dg~Ki~I~V~ 80 (88)
T PF09162_consen 46 RAQFFVEDASTASALKDVSRKICDEDGFKISIFVN 80 (88)
T ss_dssp EEEEEESSHHHHHHHHTTTTTEEBTTSBEE--EEE
T ss_pred EEEEEeCCHHHHHHHHHCCCceECCCCCEEEEEEc
Confidence 35666677777788888766543 3667665543
No 263
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=33.73 E-value=44 Score=23.73 Aligned_cols=52 Identities=13% Similarity=0.384 Sum_probs=30.6
Q ss_pred CCCCCCCcccHHHHHHHHh-cCCCe-EEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 25 LSLTPVTEPALDEFKDFFM-QFGDV-QEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F~-~~G~V-~~v~i~-~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
.++.+++. ++|++..+ +|... ..+.|. .|.+ + -.|+..+.++.+.|++.++.
T Consensus 17 ~~~~~~s~---~~L~~~i~~~~~~~~~~~~l~Y~D~d-g-----D~V~i~sd~Dl~~a~~~~~~ 71 (84)
T PF00564_consen 17 SLPSDVSF---DDLRSKIREKFGLLDEDFQLKYKDED-G-----DLVTISSDEDLQEAIEQAKE 71 (84)
T ss_dssp EECSTSHH---HHHHHHHHHHHTTSTSSEEEEEEETT-S-----SEEEESSHHHHHHHHHHHHH
T ss_pred EcCCCCCH---HHHHHHHHHHhCCCCccEEEEeeCCC-C-----CEEEeCCHHHHHHHHHHHHh
Confidence 45556666 55555443 34332 233333 2322 2 36999999999999998743
No 264
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=33.70 E-value=46 Score=26.47 Aligned_cols=33 Identities=12% Similarity=-0.142 Sum_probs=26.4
Q ss_pred ee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeec
Q 023632 21 KM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRD 56 (279)
Q Consensus 21 ~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d 56 (279)
-| |.+||.. .++ +.|+++.+.+|++.+++..+.
T Consensus 106 WVri~glP~~~~~~---~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSE---EILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhh---HHHHHHHHhcCCeEEEEcCCC
Confidence 36 8899988 556 788999999999999876543
No 265
>COG0225 MsrA Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=33.55 E-value=65 Score=27.19 Aligned_cols=70 Identities=9% Similarity=0.114 Sum_probs=32.7
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEE-EEeecCCCCCcccEEEE-EEcCHHH---HHHHHHHcCCCccCCceeEEee
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFI-TFDTEQA---VDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v-~i~~d~~tg~~rG~aFV-~F~s~e~---a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
|.-=|..++- ++|.++|-+.-.-.++ +--.|+-| -|--+ -+.|+++ |++.++++....+..++|.++.
T Consensus 62 V~yDp~~isy---~~LL~~ff~ihDPT~~nrQGnD~Gt----qYRs~Iy~~~~~q~~~a~~~~~~~q~~~~~~~~IvteI 134 (174)
T COG0225 62 VTYDPKVISY---EELLEVFFEIHDPTSLNRQGNDRGT----QYRSAIYYTNEEQKAIAEASIEELQASGYFKKPIVTEI 134 (174)
T ss_pred EEeCCccccH---HHHHHHHheecCCCCCCccCCcccc----cceeEEEEcCHHHHHHHHHHHHHHHHhccCCCCeEEEe
Confidence 6555666776 7777766543111111 11111111 12223 3334444 4555556555455566776665
Q ss_pred cc
Q 023632 98 AE 99 (279)
Q Consensus 98 a~ 99 (279)
..
T Consensus 135 ~p 136 (174)
T COG0225 135 EP 136 (174)
T ss_pred ec
Confidence 44
No 266
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=33.45 E-value=1.4e+02 Score=22.99 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 81 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~ 81 (279)
.+|.+++++.| |.+-.|..|..+. .=|+++++.|.++.-++|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n--~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEEN--LLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcc--cEEEEEEEcChHHHHHHHh
Confidence 56777778876 5666666665433 4599999996655544444
No 267
>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B ....
Probab=33.17 E-value=1.6e+02 Score=20.16 Aligned_cols=52 Identities=17% Similarity=0.205 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCeEEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHH-cCCCccC
Q 023632 37 EFKDFFMQFGDVQEHQIMRDHS-TSRSRGFGFITFDTEQAVDDLLAK-GNKLELA 89 (279)
Q Consensus 37 ~L~~~F~~~G~V~~v~i~~d~~-tg~~rG~aFV~F~s~e~a~~Ai~~-lng~~l~ 89 (279)
||++.+.++-.|.++.++-..+ .....-+|||+. +.+++.+.|+. |...++-
T Consensus 1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~-~~~~i~~~~~~~l~~~~~P 54 (73)
T PF13193_consen 1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL-DEEEIRDHLRDKLPPYMVP 54 (73)
T ss_dssp HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE-HHHHHHHHHHHHS-GGGS-
T ss_pred CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe-eecccccchhhhCCCccee
Confidence 4677888888898886654332 222566899988 44555555554 5544444
No 268
>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover. The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=32.99 E-value=2.1e+02 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=16.2
Q ss_pred EEEEcCHHHHHHHHHHcC
Q 023632 67 FITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 67 FV~F~s~e~a~~Ai~~ln 84 (279)
.|++.+.++.+.|+..++
T Consensus 59 lvtIssdeEL~~A~~~~~ 76 (87)
T cd06402 59 LVAFSSDEELVMALGSLN 76 (87)
T ss_pred EEeecCHHHHHHHHHcCC
Confidence 599999999999999875
No 269
>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]
Probab=32.93 E-value=15 Score=37.30 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=17.2
Q ss_pred EEEEEcCHHHHHHHHHHcCCCcc
Q 023632 66 GFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 66 aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
.|-.+.++.++.+-|++|.++.|
T Consensus 513 VFn~yhSEt~lvRYm~kLenKDl 535 (1001)
T KOG2040|consen 513 VFNSYHSETELVRYMKKLENKDL 535 (1001)
T ss_pred hhhhcccHHHHHHHHHHhhccch
Confidence 45667888888888888876543
No 270
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=32.80 E-value=1.9e+02 Score=22.02 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCc-----ccEEEEEEcCHHHHHHHHHHc
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRS-----RGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~-----rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+....+| |.-.+...++ +.+|...+..-|-...| .|. .+++ .-|++|.-.+++++++-++.|
T Consensus 5 ~~~~YVVt~~~~e~~l~d--~~~L~~~lt~~GF~~tl---~D~-~G~~HeLgtntfgl~S~l~~~eV~~la~~l 72 (96)
T PF11080_consen 5 DITRYVVTFEYQEAGLTD--INELNNHLTRAGFSTTL---TDE-DGNPHELGTNTFGLISALSAEEVAQLARGL 72 (96)
T ss_pred cceEEEEEEEeccCChHH--HHHHHHHHHhcCceeEE---ecC-CCCEeecCCCeEEEEecCCHHHHHHHHHHH
Confidence 3444555 6655555544 57888888766644433 332 2221 249999999999988877776
No 271
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=32.59 E-value=76 Score=23.12 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=20.9
Q ss_pred cccEEEEEEcCHHHHHHHHHHcCC
Q 023632 62 SRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 62 ~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
.+||-|||=.+++++.+||+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TT
T ss_pred CceEEEEEeCCHHHHHHHHhcccc
Confidence 689999999999999999998754
No 272
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=32.23 E-value=44 Score=25.54 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.6
Q ss_pred ccEEEEEEcCHHHHHHHHHHc
Q 023632 63 RGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~l 83 (279)
--|..++|.+.++.++|..++
T Consensus 66 VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 66 VVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEcCchhHHHHHHHHh
Confidence 348999999999999888764
No 273
>PF01282 Ribosomal_S24e: Ribosomal protein S24e; InterPro: IPR001976 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the S24e ribosomal proteins from eukaryotes and archaebacteria. These proteins have 101 to 148 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2V94_B 1YWX_A 2G1D_A 3IZ6_U 1XN9_A 2XZM_P 2XZN_P 3U5G_Y 3J16_D 3IZB_U ....
Probab=32.23 E-value=2e+02 Score=21.03 Aligned_cols=43 Identities=19% Similarity=0.395 Sum_probs=22.9
Q ss_pred HHHHHHHhc-CCC----eEEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 023632 36 DEFKDFFMQ-FGD----VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 36 ~~L~~~F~~-~G~----V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~A 79 (279)
++|++.+.+ +.. |.-..|.+.--..++.+||.| |+|.+.+++.
T Consensus 16 ~ei~~klA~~~~~~~~~ivv~~~~t~fG~~~s~g~a~I-Yd~~e~~kk~ 63 (84)
T PF01282_consen 16 KEIREKLAAMLNVDPDLIVVFGIKTEFGGGKSTGFAKI-YDSAEALKKF 63 (84)
T ss_dssp HHHHHHHHHHHTSTGCCEEEEEEEESSSSSEEEEEEEE-ESSHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEeccEecCCCceEEEEEEE-eCCHHHHHHh
Confidence 566655543 221 222233444345666777765 7777776653
No 274
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=32.22 E-value=1.3e+02 Score=27.55 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=23.4
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGD 47 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~ 47 (279)
-.+.| |.+.|.+||++.+..+++.|..+.+
T Consensus 128 ~~Nilpi~Gs~h~Vt~~~lAa~~e~~~~~~p 158 (329)
T COG3660 128 GPNILPINGSPHNVTSQRLAALREAFKHLLP 158 (329)
T ss_pred CCceeeccCCCCcccHHHhhhhHHHHHhhCC
Confidence 34556 8899999999777778888888754
No 275
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=32.14 E-value=1.4e+02 Score=26.62 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=27.3
Q ss_pred CCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCC------CcccEEEEEEcCHHHHHHHHHH
Q 023632 26 SLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTS------RSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 26 Lp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg------~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
||..++++|++.|++.+..--.| .++.++.+. .+.-+|+|..+-.++..+.|+.
T Consensus 72 vp~~~~d~El~~l~~~l~d~v~V---~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d 131 (247)
T PTZ00136 72 VPSICTDQELQHLRNSLPDSVKV---QRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQD 131 (247)
T ss_pred cCCcCCHHHHHHHHHhCcCCccE---EEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHH
Confidence 68899995555554433221122 222222111 0112888877766666666654
No 276
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional
Probab=31.85 E-value=18 Score=34.91 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=37.6
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCC--eEEEEE--eecCCCCCcccE-EEEEEc---CHHHHHHHHHH-cCCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGD--VQEHQI--MRDHSTSRSRGF-GFITFD---TEQAVDDLLAK-GNKL 86 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~--V~~v~i--~~d~~tg~~rG~-aFV~F~---s~e~a~~Ai~~-lng~ 86 (279)
|..||.+.+. ++-.+|++.||+ |+++.+ +.++.|--..++ +...|. ++++++.||+. |++.
T Consensus 210 L~~LP~eYd~---g~Y~~FIe~YGTHYITsv~LGG~VE~vTs~RtC~~slps~~~GlS~~qVk~cLn~ELqgn 279 (524)
T PTZ00481 210 IDALPEDYQP---DVYNEFLNAWGTHISVDTFIGGMIEKQTVFKDCVFFTPQFNGGLSPEQVEQALRNELNGN 279 (524)
T ss_pred HHhcchhcCH---HHHHHHHHhcCceEEEEeeEcCEEEEEeehhhhhhhchhhhcCCCHHHHHHHHHHHhcCC
Confidence 8899999999 888899999986 333332 112122222233 223344 78899999875 3443
No 277
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=31.83 E-value=48 Score=23.34 Aligned_cols=24 Identities=17% Similarity=0.112 Sum_probs=18.9
Q ss_pred EEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 65 FGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
..+|+|.|..+|-+|-+.|....|
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 578999999998888887755444
No 278
>COG1369 POP5 RNase P/RNase MRP subunit POP5 [Translation, ribosomal structure and biogenesis]
Probab=31.79 E-value=2.4e+02 Score=22.48 Aligned_cols=33 Identities=18% Similarity=0.121 Sum_probs=20.7
Q ss_pred ccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 63 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
+|.--+.=+..+.+..||..+. ++++++|.|..
T Consensus 67 ~GIvrc~R~~~~~v~aAL~l~~--~~~g~rv~I~~ 99 (124)
T COG1369 67 TGIVRCRREYVDLVRAALMLAR--EVNGKRVIIVV 99 (124)
T ss_pred ceEEEEechhHHHHHHHHHHHH--HhCCceEEEEE
Confidence 3444444456677777777764 77777776653
No 279
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional
Probab=31.52 E-value=1e+02 Score=29.24 Aligned_cols=46 Identities=13% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHHhcCC-Ce----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFG-DV----QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G-~V----~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++++++|+.-= .| ..+.|+ | ++.-+.-+-||+..+.+++.+||+.|
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~l~~l-D-q~~lP~~~~~~~~~~~~~v~~aI~~M 56 (363)
T PRK05772 6 KEVKELFKPKLLPIIWKDNTLTLL-D-QSLLPFETVYVDLKTVEEVALAIRNM 56 (363)
T ss_pred HHHHHHhCCCCceEEecCCEEEEE-e-cCCCCCeEEEEEeCCHHHHHHHHHhC
Confidence 67888886431 11 112232 3 24455568899999999999999986
No 280
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=31.40 E-value=1.7e+02 Score=27.51 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=11.5
Q ss_pred EEEEEEcCHHHHHHHHHHc
Q 023632 65 FGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~l 83 (279)
..+|+|+.+-+++++.+.|
T Consensus 255 sv~ve~~~~~~~~~~~~~l 273 (347)
T PRK06728 255 SVYIELEKEATVAEIKEVL 273 (347)
T ss_pred EEEEEECCCCCHHHHHHHH
Confidence 4678997555555555444
No 281
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=31.39 E-value=1.8e+02 Score=20.31 Aligned_cols=48 Identities=8% Similarity=0.332 Sum_probs=29.2
Q ss_pred CCCCcccHHHHHHHH-hcCCCe-EEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 28 TPVTEPALDEFKDFF-MQFGDV-QEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 28 ~~~te~~~~~L~~~F-~~~G~V-~~v~i~-~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
..++- ++|++.. ++|... ..+.|. .|.+ + -+|+..+.++.+.||+.+.
T Consensus 19 ~~~s~---~~L~~~i~~~~~~~~~~~~l~y~D~e-~-----d~v~l~sd~Dl~~a~~~~~ 69 (81)
T cd05992 19 RSISF---EDLRSKIAEKFGLDAVSFKLKYPDED-G-----DLVTISSDEDLEEAIEEAR 69 (81)
T ss_pred CCCCH---HHHHHHHHHHhCCCCCcEEEEeeCCC-C-----CEEEeCCHHHHHHHHHHHh
Confidence 66666 6665544 344332 233333 2221 1 5799999999999999864
No 282
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=31.34 E-value=80 Score=23.91 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=20.0
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITFDT 72 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F~s 72 (279)
+|++|+|..-...++-|++|-|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47777776654567889999999987
No 283
>PF11382 DUF3186: Protein of unknown function (DUF3186); InterPro: IPR021522 This bacterial family of proteins has no known function.
Probab=31.11 E-value=1.6e+02 Score=27.12 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=38.8
Q ss_pred hhhcCCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEE-eecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 10 TMFINRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQI-MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 10 ~~~~~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i-~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
+......+..++| |--+|. ++.++.++|++++++-|-...-+| +++ .|.+++.+++..+.+..
T Consensus 74 ~~lv~g~L~g~~V~vV~~p~-a~~~~~~~v~~~L~~AGA~v~g~i~lt~------------~~~d~~~~~~l~~~~~~ 138 (308)
T PF11382_consen 74 PRLVAGRLTGRSVAVVTLPG-ADDEDVDAVRELLEQAGATVTGRITLTD------------KFLDPEQADKLRSLAAQ 138 (308)
T ss_pred HHHhcCccCCCEEEEEEcCC-CChHHHHHHHHHHHHCCCeEEEEEEEch------------hhcChhhHHHHHHHHhh
Confidence 3344566777888 666654 344466889999999886544333 333 34477777766666544
No 284
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=30.97 E-value=1.2e+02 Score=28.60 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
++|++.|++---|..++.-++- -||+|.++.++++-|...++..+..++|
T Consensus 265 ~~Le~HF~~~hy~ct~qtc~~~--------k~~vf~~~~el~~h~~~~h~~~~~~~~~ 314 (493)
T COG5236 265 EDLEAHFRNAHYCCTFQTCRVG--------KCYVFPYHTELLEHLTRFHKVNARLSEI 314 (493)
T ss_pred HHHHHHhhcCceEEEEEEEecC--------cEEEeccHHHHHHHHHHHhhcccccCcC
Confidence 6788888776556555544442 3799999999998888877766665543
No 285
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=30.95 E-value=1e+02 Score=29.47 Aligned_cols=47 Identities=13% Similarity=0.125 Sum_probs=33.3
Q ss_pred HHHHHHHh----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~----~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
-+|..+|. .+|.|+++.|...+.. +.+-+.++.|++.+++.+|+..+
T Consensus 147 ~dl~~l~~Gs~GtlGiit~~~lkl~p~p-~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 147 YDLTGLFVGSEGTLGIVTEATLKLLPKP-ENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CChhhhcccCCccceEEEEEEEEeecCC-CccEEEEEECCCHHHHHHHHHHH
Confidence 46777774 3678888877665533 23456678999999999988665
No 286
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=30.92 E-value=1.6e+02 Score=22.71 Aligned_cols=47 Identities=17% Similarity=0.233 Sum_probs=29.7
Q ss_pred HHHHHHhcCCCeEEEEE-----eecCCC----------CCcccEEEEEEcCHHHHHHHHHHc
Q 023632 37 EFKDFFMQFGDVQEHQI-----MRDHST----------SRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 37 ~L~~~F~~~G~V~~v~i-----~~d~~t----------g~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
...++|..||.+.-++. +..+.| +..--|.+|+|.|.+..+++.+++
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 44578999997654432 222222 223358999999999999988775
No 287
>PF11215 DUF3010: Protein of unknown function (DUF3010); InterPro: IPR021378 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=30.85 E-value=92 Score=25.28 Aligned_cols=39 Identities=10% Similarity=0.204 Sum_probs=22.2
Q ss_pred HHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 39 KDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 39 ~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+++++.| .|+.|.|.+-...++.-|-| |.|. +|.||+.+
T Consensus 54 ~kl~~dy-~Vd~VvIk~R~~KGKfAGga-~~FK----mEaaIQL~ 92 (138)
T PF11215_consen 54 AKLMEDY-KVDKVVIKERATKGKFAGGA-VGFK----MEAAIQLI 92 (138)
T ss_pred HHHHHHc-CCCEEEEEecccCCCccCCc-hhHH----HHHHHHhc
Confidence 3344444 57888777666666655543 4554 44555554
No 288
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=30.52 E-value=36 Score=21.01 Aligned_cols=16 Identities=25% Similarity=0.491 Sum_probs=10.2
Q ss_pred CCCCcccHHHHHHHHhcCC
Q 023632 28 TPVTEPALDEFKDFFMQFG 46 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~~~G 46 (279)
.++++ ++|+++|.+..
T Consensus 19 ~Dtd~---~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDE---DQLKEVFNRIK 34 (36)
T ss_dssp S---H---HHHHHHHHCS-
T ss_pred ccCCH---HHHHHHHHHhc
Confidence 35677 99999998754
No 289
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=30.48 E-value=54 Score=31.01 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=14.7
Q ss_pred cEEEEEEcCHHHHHHHH
Q 023632 64 GFGFITFDTEQAVDDLL 80 (279)
Q Consensus 64 G~aFV~F~s~e~a~~Ai 80 (279)
-|-+|+|+++++|.+-|
T Consensus 41 PF~iv~~~s~~~Ar~~~ 57 (421)
T KOG2671|consen 41 PFFIVEFESEEIARNLI 57 (421)
T ss_pred ceEEEEeCchHHHHHHH
Confidence 48999999999998855
No 290
>cd00874 RNA_Cyclase_Class_II RNA 3' phosphate cyclase domain (class II). These proteins function as RNA cyclase to catalyze the ATP-dependent conversion of 3'-phosphate to a 2'.3'-cyclic phosphodiester at the end of RNA molecule. A conserved catalytic histidine residue is found in all members of this subfamily.
Probab=30.23 E-value=49 Score=30.79 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=30.4
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF 70 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F 70 (279)
+.+||.++.+..++..++++++. .+.+|.|..+..++++.|++.+.+
T Consensus 191 ~~~l~~~va~r~~~~a~~~L~~~-~~~dv~i~~~~~~~~s~G~~i~L~ 237 (326)
T cd00874 191 AANLPPHVAERQAEAAAALLRKA-LGLQIEIEPEDQSALGPGSGIVLW 237 (326)
T ss_pred EccCCHHHHHHHHHHHHHHHhhc-cCCCeEEEEEecCCCCCCEEEEEE
Confidence 56899988885556667777773 334556665555567777665443
No 291
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=30.04 E-value=2.3e+02 Score=23.57 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=32.5
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
.+|-.+|.+.+ .|.++.+....+.+.++ +.++.-.+++.+++.+++|+.
T Consensus 17 ~rI~~lf~rrg~NI~Sl~v~~te~~~~sr-iti~V~~~~~~i~qi~kQl~K 66 (161)
T PRK11895 17 SRVAGLFSRRGYNIESLTVGPTEDPGLSR-MTIVTSGDEQVIEQITKQLNK 66 (161)
T ss_pred HHHHHHHHhCCCcEEEEEeeecCCCCEEE-EEEEEECCHHHHHHHHHHHhc
Confidence 56888888776 46776554432233333 555555688899999998865
No 292
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.72 E-value=1.8e+02 Score=19.49 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCC-eEEEEEeecCCCCCcccEEEEE----EcCHHHHHHHHHHcCC
Q 023632 36 DEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFIT----FDTEQAVDDLLAKGNK 85 (279)
Q Consensus 36 ~~L~~~F~~~G~-V~~v~i~~d~~tg~~rG~aFV~----F~s~e~a~~Ai~~lng 85 (279)
.+|..+|.+++. |..+...... . ...+.+. =.+.+++++++++|+.
T Consensus 15 ~~i~~~l~~~~i~I~~~~~~~~~-~---~~~~~~~i~~~~~~~~~l~~~i~~L~~ 65 (79)
T cd04881 15 AKITGILAEHGISIESVIQKEAD-G---GETAPVVIVTHETSEAALNAALAEIEA 65 (79)
T ss_pred HHHHHHHHHcCCCeEEEEEcccC-C---CCceeEEEEEccCCHHHHHHHHHHHHc
Confidence 677788877753 5555432221 1 1233332 2467788888888764
No 293
>KOG3702 consensus Nuclear polyadenylated RNA binding protein [RNA processing and modification]
Probab=29.57 E-value=33 Score=34.74 Aligned_cols=68 Identities=7% Similarity=0.028 Sum_probs=46.3
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
+.+--..-+. .-|..++..+.+++.++|+..........-++++|..++.++.|... ..+.+....++
T Consensus 516 ~~~~~~~s~~---~s~s~~s~~~~~ltk~k~l~~Cky~~~Ct~a~Ce~~HPtaa~~~~s~-p~k~fa~~~~k 583 (681)
T KOG3702|consen 516 VANGHGGSNP---DSLSRHSEKKNELTKAKILTRCKYGPACTSAECEFAHPTAAENAKSL-PNKKFASKCLK 583 (681)
T ss_pred cccccccCCC---cchhhCcccccccccceeeccccCCCcCCchhhhhcCCcchhhhhcc-cccccccccee
Confidence 5554444555 66778888888888888887766666666899999998888666443 34444444443
No 294
>KOG3447 consensus Mitochondrial/chloroplast ribosomal S17-like protein [Translation, ribosomal structure and biogenesis]
Probab=29.43 E-value=53 Score=26.46 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=37.3
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCH-HHHHHHHHHcCCCccCCceeEEee
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE-QAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~-e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
-+| |.-||...|..-..++.++.-++|.|. |+.|++. ++-.+|.+. .+.+..+... ..+.|+++.
T Consensus 62 DtVLir~lp~r~t~~V~H~v~~VVfk~G~Ii------dPvTGkk--~~~~ty~e~~~~~~~~~~~k-----~~k~l~~es 128 (150)
T KOG3447|consen 62 DTVLIRALPVRRTKHVKHEVAEVVFKVGKII------DPVTGKK--CAGDTYLESPLSKETTQLSK-----NLKELNIES 128 (150)
T ss_pred CEEEEecCCcchhhhhhhhhHhheeeccccc------CCCcCcc--ccCcchhcchHHHHHHHhhh-----cccccchhh
Confidence 345 899997666522245666666777754 4556654 455566543 3333333322 234455555
Q ss_pred ccCC
Q 023632 98 AEPK 101 (279)
Q Consensus 98 a~~~ 101 (279)
|.++
T Consensus 129 a~~r 132 (150)
T KOG3447|consen 129 AQFR 132 (150)
T ss_pred cChh
Confidence 5443
No 295
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=29.25 E-value=1.6e+02 Score=22.99 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHhcCCCeEEEE------EeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQ------IMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~------i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+||+ ...+|-.++++. |.-.-...-.-|--|+.+.++++|++.+++.
T Consensus 56 ~E~r-~~~~~~~vk~v~aa~gvkI~~~gL~~v~aG~~~~vv~~e~~a~~~~~~~ 108 (110)
T cd03703 56 KELR-VKSRFIHVKEVKAAAGVKILAPDLEKAIAGSPLLVVGPEDEIEELKEEV 108 (110)
T ss_pred hhhc-cccccceeeEEecCCCcEEEeCCCccccCCCEEEEECCHHHHHHHHHHH
Confidence 5566 566777776654 4321112225577899999999999888764
No 296
>KOG1635 consensus Peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]
Probab=29.20 E-value=1.1e+02 Score=25.89 Aligned_cols=60 Identities=13% Similarity=0.026 Sum_probs=33.0
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v-~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
-.| |.--|..++- ++|.++|.+...-..+ +--.|.-|.- -- -|-|.+.|+++.|.+.++.
T Consensus 76 EvvrV~ydpk~~sy---~~Lld~Fw~~HdPtt~n~QG~D~GtQY--RS-~I~~~s~eq~k~A~~s~e~ 137 (191)
T KOG1635|consen 76 EVVRVQYDPKVISY---EELLDFFWSRHDPTTLNRQGNDVGTQY--RS-GIYTYSPEQEKLARESKER 137 (191)
T ss_pred eEEEEEeCcccccH---HHHHHHHHHcCCchhhhccCCccccee--ee-eeeeCCHHHHHHHHHHHHH
Confidence 345 7777888888 8899988665433222 1111111111 11 2556677777777666543
No 297
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=29.05 E-value=1.3e+02 Score=17.76 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=26.2
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.+|.++|.+.+ .|..+....... .....-+|.+++.++.+++++.|
T Consensus 13 ~~i~~~l~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 13 AKVLSVLAEAGINITSIEQRTSGD--GGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred HHHHHHHHHCCCcEEEEEeEEcCC--CCeEEEEEEEechHHHHHHHHHh
Confidence 56777777654 455555433321 22334556666666777777765
No 298
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=28.93 E-value=1e+02 Score=27.59 Aligned_cols=58 Identities=9% Similarity=-0.016 Sum_probs=35.4
Q ss_pred cee-eeCCCCCCC--cccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEE---EcCHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVT--EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFIT---FDTEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~t--e~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~---F~s~e~a~~Ai~~l 83 (279)
.+| |.|+|...+ ...+++|.++++.+.....+.|..|. +.+++. ..+++.++.+++.+
T Consensus 138 v~l~lEN~~~~~~~l~~~~~el~~ll~~~~~~~~lg~~lDt------~H~~~~g~~~~~~~~~~~~~~~~ 201 (274)
T TIGR00587 138 VTILLENMAGQGSELGRSFEELAYIIKVIVDKRRIGVCLDT------CHFFAAGYDITTKAYFEVVKNEF 201 (274)
T ss_pred CEEEEEeCCCCCCccCCCHHHHHHHHHhcCCCCceEEEEEh------hhHHhcCCCcCCHHHHHHHHHHH
Confidence 567 999975421 11238899999887654567777773 233332 23466677666654
No 299
>COG2088 SpoVG Uncharacterized protein, involved in the regulation of septum location [Cell envelope biogenesis, outer membrane]
Probab=28.38 E-value=78 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=22.3
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcCH
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITFDTE 73 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F~s~ 73 (279)
+|++|+|.+-...++.|-++-|+|+++
T Consensus 2 ~iTdVRirkv~~dgrmkA~vsvT~D~e 28 (95)
T COG2088 2 EITDVRIRKVDTDGRMKAYVSVTLDNE 28 (95)
T ss_pred cceeEEEEEecCCCcEEEEEEEEecce
Confidence 478888887777788899999999874
No 300
>COG1892 Phosphoenolpyruvate carboxylase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=28.21 E-value=1.3e+02 Score=29.33 Aligned_cols=71 Identities=8% Similarity=0.143 Sum_probs=43.9
Q ss_pred chhhhhhhhhcCCCCCCce-e-eeCCCCC--CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE-cCHHHHH
Q 023632 3 ELLTEILTMFINRQTTTQK-M-TGLSLTP--VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAVD 77 (279)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~-l-V~nLp~~--~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F-~s~e~a~ 77 (279)
+.+.+..+...+-..+..- | |+.+|+. ++- +..+++++.|-.|....|.. || .| .+.++++
T Consensus 229 ~AL~~l~el~ee~~~~i~PI~G~Gs~PFRG~l~P---~n~e~~~~EY~gv~T~TvQS----------af-kYD~~~~~v~ 294 (488)
T COG1892 229 KALSELSELSEELGVPIYPILGVGSLPFRGHLRP---ENAENVLEEYAGVYTYTVQS----------AF-KYDHEYGDVV 294 (488)
T ss_pred HHHHHHHHHHhhcCCcccceecCCCCCcCCCCCh---hhhHHHHHHcCCceEEEEee----------cc-cccCCHHHHH
Confidence 3333333333333344444 4 8999985 455 77888999998888877642 23 33 3567888
Q ss_pred HHHHHcCCCc
Q 023632 78 DLLAKGNKLE 87 (279)
Q Consensus 78 ~Ai~~lng~~ 87 (279)
+||+.++...
T Consensus 295 ~~i~~i~~~~ 304 (488)
T COG1892 295 KAIERIKSVK 304 (488)
T ss_pred HHHHHHHhhc
Confidence 8888765543
No 301
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=28.19 E-value=2.5e+02 Score=20.87 Aligned_cols=30 Identities=13% Similarity=0.205 Sum_probs=20.5
Q ss_pred EEEEEcCHHHHHHHHHHc-CCCccCCceeEE
Q 023632 66 GFITFDTEQAVDDLLAKG-NKLELAGAQVEV 95 (279)
Q Consensus 66 aFV~F~s~e~a~~Ai~~l-ng~~l~g~~i~V 95 (279)
-+|++.+.++.+.||+.+ .....+--+|.|
T Consensus 56 d~V~l~~D~DL~~a~~~~~~~~~~~~lrl~v 86 (91)
T cd06398 56 DVVTLVDDNDLTDAIQYFCSGSRLNPLRIDV 86 (91)
T ss_pred CEEEEccHHHHHHHHHHHhccCCCceEEEEE
Confidence 379999999999999984 333333333433
No 302
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=27.93 E-value=90 Score=25.79 Aligned_cols=38 Identities=16% Similarity=0.391 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+++|+++|..|-.++ ..+-+..-.|.++++|.+.|++.
T Consensus 113 ~~~i~~fF~~YK~l~-----------~~k~~~~~~~~~~~~A~~~i~~~ 150 (156)
T PF00719_consen 113 LDEIEHFFRNYKDLE-----------ENKWVEVGGWEDAEEALKVIKEA 150 (156)
T ss_dssp HHHHHHHHHHTTTTS-----------TTEEEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcC-----------CCCeEEeCCCcCHHHHHHHHHHH
Confidence 378999999986653 12234456788999999888763
No 303
>PLN02971 tryptophan N-hydroxylase
Probab=27.77 E-value=1.1e+02 Score=30.22 Aligned_cols=60 Identities=5% Similarity=0.148 Sum_probs=37.9
Q ss_pred eeCCCCCCCcc-cHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 23 TGLSLTPVTEP-ALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 23 V~nLp~~~te~-~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
|+||+.-.... ....|.+++++|+ +|..+.+-.. -+|...+++.++.++.. +...+..++
T Consensus 68 iGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~---------~~vvv~dpe~ikevl~~-~~~~f~~rp 129 (543)
T PLN02971 68 VGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNT---------HVIPVTCPKIAREIFKQ-QDALFASRP 129 (543)
T ss_pred ccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCc---------ceEEECCHHHHHHHHHh-cchhhcCCC
Confidence 77775432211 1145778889998 6766654321 26778899999999987 444444444
No 304
>COG0430 RCL1 RNA 3'-terminal phosphate cyclase [RNA processing and modification]
Probab=27.41 E-value=1.3e+02 Score=28.14 Aligned_cols=48 Identities=17% Similarity=0.131 Sum_probs=32.8
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 71 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~ 71 (279)
+.|||..+.|...+.+++++.+.+.-.+|.+...+. ..+.|++.+.+.
T Consensus 195 ~~~lp~hvAeRqa~~A~~~L~~~~~~v~i~~~~~~~-~~spG~gI~L~a 242 (341)
T COG0430 195 STNLPPHVAERQAEAAKELLGKLGLEVEIYTEVRRG-GLSPGSGIVLWA 242 (341)
T ss_pred eccCCcHHHHHHHHHHHHHhhhccCCceEEEeeccc-CCCCCceEEEEE
Confidence 679999999965567778888776655665543321 247778777665
No 305
>PRK06545 prephenate dehydrogenase; Validated
Probab=26.77 E-value=2.7e+02 Score=25.94 Aligned_cols=56 Identities=13% Similarity=0.111 Sum_probs=39.0
Q ss_pred CCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 25 LSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.||...-+ |.+|..++...+ .|++|+|...+ ....+..-+.|.+++++++|.+.+.
T Consensus 296 ~v~d~pg~--~~~~~~~~~~~~i~i~~~~i~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~ 352 (359)
T PRK06545 296 DVPDEPGV--IARVTAILGEEGISIENLRILEAR--EDIHGVLQISFKNEEDRERAKALLE 352 (359)
T ss_pred eCCCCCCH--HHHHHHHHHHcCCCeecceeeecc--CCcCceEEEEeCCHHHHHHHHHHHH
Confidence 45544433 245555555554 58899988774 4556788899999999999988764
No 306
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=26.71 E-value=1.3e+02 Score=25.48 Aligned_cols=62 Identities=16% Similarity=0.287 Sum_probs=39.5
Q ss_pred cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHcCCCccCCceeEEee
Q 023632 34 ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 34 ~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
|++.|.+-++.|-.|.+++|.+.-+. --+--.|..- -.+.|.-||.+.+.+.|.+.+|.|+.
T Consensus 55 d~e~l~~~lks~d~v~ev~i~~sle~--iyGKRvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDT 120 (218)
T COG1707 55 DFEKLLERLKSFDYVIEVEIHRSLEE--IYGKRVIIIGGGAQVSQVARGAISEADRHNIRGERISVDT 120 (218)
T ss_pred CHHHHHHHhhccceEEEeeecchHHH--HhCcEEEEECCchhHHHHHHhhcchhhhcccccceeeeec
Confidence 34777888888888888887654321 1111222221 23556667777788999999998874
No 307
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=26.65 E-value=41 Score=30.61 Aligned_cols=19 Identities=26% Similarity=0.616 Sum_probs=17.0
Q ss_pred HHHHHHHhcCCCeEEEEEe
Q 023632 36 DEFKDFFMQFGDVQEHQIM 54 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~ 54 (279)
+.|+..|+.||+|..|.|+
T Consensus 176 ~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 176 DRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred HHHHHHHHHhccceecCCc
Confidence 6799999999999988875
No 308
>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]
Probab=26.45 E-value=71 Score=27.19 Aligned_cols=20 Identities=30% Similarity=0.416 Sum_probs=10.3
Q ss_pred CCCcccEEEEEEcCHHHHHH
Q 023632 59 TSRSRGFGFITFDTEQAVDD 78 (279)
Q Consensus 59 tg~~rG~aFV~F~s~e~a~~ 78 (279)
+...-+|+-|.|-..+.+.+
T Consensus 88 ~~f~ag~GtVLFfeDq~Vv~ 107 (200)
T COG3560 88 DSFKAGYGTVLFFEDQNVVK 107 (200)
T ss_pred chhhhccceEEEEecchHHH
Confidence 33445677666644444433
No 309
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=26.41 E-value=1.3e+02 Score=27.82 Aligned_cols=61 Identities=16% Similarity=0.228 Sum_probs=36.1
Q ss_pred cee-eeCCC-CCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 20 QKM-TGLSL-TPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 20 ~~l-V~nLp-~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
.+| |.--| ..++.+.|..|.++.++||. -.|+|... .++- |...++++|++++++|+.+.|
T Consensus 30 ~~vRv~~ppgg~l~~e~Lr~i~diAekyG~-G~i~iT~r------qg~e-i~~i~~e~~~~v~~~L~~iG~ 92 (317)
T COG2221 30 YTVRVRTPPGGFLSAETLRKIADIAEKYGD-GLIHITSR------QGLE-IPGISPEDADDVVEELREIGL 92 (317)
T ss_pred EEEEEecCCCCccCHHHHHHHHHHHHHhCC-CeEEEEec------CceE-eccCCHHHHHHHHHHHHHcCC
Confidence 466 76556 67777555667778889986 12333221 1122 233677788888877764444
No 310
>PF01781 Ribosomal_L38e: Ribosomal L38e protein family; InterPro: IPR002675 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L38e forms part of the 60S ribosomal subunit []. This family is found in eukaryotes.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZS_n 3IZR_n 4A1D_P 4A19_P 4A18_P 4A1B_P.
Probab=26.30 E-value=2e+02 Score=20.48 Aligned_cols=51 Identities=12% Similarity=0.268 Sum_probs=29.9
Q ss_pred cHHHHHHHHhcC--CCeEEEEEeecCCC-CC----cccEE-EEEEcCHHHHHHHHHHcC
Q 023632 34 ALDEFKDFFMQF--GDVQEHQIMRDHST-SR----SRGFG-FITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 34 ~~~~L~~~F~~~--G~V~~v~i~~d~~t-g~----~rG~a-FV~F~s~e~a~~Ai~~ln 84 (279)
++.+|++|+... -....|+|.++++. -+ +.-|- -+.+.|.+-|++..+.|.
T Consensus 3 qi~~iK~FL~~arrkDAksv~iKk~~~~~tKFKvRcsryLYTLvv~d~~KAeklkqSLP 61 (69)
T PF01781_consen 3 QIKDIKDFLETARRKDAKSVKIKKNKDNGTKFKVRCSRYLYTLVVKDKEKAEKLKQSLP 61 (69)
T ss_dssp HHHHHHHHHHHHCSS-EEEEEEECESSSTEEEEEECSS-EEEESS-SHHHHHHHHHSSS
T ss_pred chhhHHHHHHHHhhCCCceEEEEecCCCeeEEEEEecceEEEEEEcCHHHHHHHHhhCC
Confidence 357788887543 45678888876544 11 11122 244568888888887764
No 311
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=26.27 E-value=1.6e+02 Score=29.55 Aligned_cols=47 Identities=11% Similarity=0.136 Sum_probs=33.6
Q ss_pred HHHHHHH----hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFF----MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F----~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
-+|..+| ..+|.|+++.|...+.. ..+-.+++.|.+.++|.+|+..+
T Consensus 281 ~dL~~l~~GseGtLGIIT~~tlrl~p~P-~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 281 YDLTRLVIGSEGTLGVITEVTLRLQKIP-QHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred ccHHHHhccCCCceEEEEEEEEEeecCC-cceEEEEEEcCCHHHHHHHHHHH
Confidence 4677776 25788888877655432 23447789999999988888765
No 312
>COG5584 Predicted small secreted protein [Function unknown]
Probab=26.26 E-value=1.1e+02 Score=23.39 Aligned_cols=31 Identities=16% Similarity=0.118 Sum_probs=23.4
Q ss_pred CCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCC
Q 023632 25 LSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHS 58 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~ 58 (279)
||+.+..- +-+++.|+++++|+--.|...++
T Consensus 29 ~is~e~al---k~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENAL---KVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHH---HHHHHHhcccCCcceeEEEEecc
Confidence 44444433 78999999999999888887764
No 313
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=26.13 E-value=3.6e+02 Score=21.96 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH-HcC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGN 84 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~-~ln 84 (279)
+++.+.+..+-+|.+|..+ |+...=++.|.+.+.+++++.+. .+.
T Consensus 91 ~~~~~~l~~~p~V~~~~~v----tG~~d~~l~v~~~~~~~l~~~l~~~l~ 136 (164)
T PRK11169 91 EQFNAAVQKLEEIQECHLV----SGDFDYLLKTRVPDMSAYRKLLGETLL 136 (164)
T ss_pred HHHHHHHhcCcceeeeeee----cCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 4556667777778887665 55556678899999999999874 443
No 314
>PRK07868 acyl-CoA synthetase; Validated
Probab=25.98 E-value=2.9e+02 Score=29.59 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc-----CHHHHHHHHHHcCCCccCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD-----TEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~-----s~e~a~~Ai~~lng~~l~g 90 (279)
.+|++++.++-.|.++.++-.++.....-.|||+.. +++++.+.+++|...++-.
T Consensus 872 ~EIE~~L~~hp~V~~aaVvg~~d~~~~~~~a~Vv~~~~~~~~~~~L~~~l~~l~~y~vP~ 931 (994)
T PRK07868 872 EPVTDALGRIGGVDLAVTYGVEVGGRQLAVAAVTLRPGAAITAADLTEALASLPVGLGPD 931 (994)
T ss_pred HHHHHHHhcCCCeeEEEEEeecCCCCceEEEEEEeCCCCcCCHHHHHHHHHhCCCCcCCe
Confidence 889999999999988876644333334557888764 3566666776665444443
No 315
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=25.87 E-value=62 Score=28.75 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=16.4
Q ss_pred CCCCCceeeeCCCCCCCcccHHHHHHHHh
Q 023632 15 RQTTTQKMTGLSLTPVTEPALDEFKDFFM 43 (279)
Q Consensus 15 ~~~~~~~lV~nLp~~~te~~~~~L~~~F~ 43 (279)
++++...||+|||++++. -.|.++++
T Consensus 126 d~~p~~H~IGNLPf~i~~---pliik~l~ 151 (326)
T KOG0821|consen 126 DDPPNVHIIGNLPFSVST---PLIIKWLE 151 (326)
T ss_pred cCCCceEEeccCCccccc---hHHHHHHh
Confidence 334444449999999987 44444443
No 316
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=25.81 E-value=34 Score=29.21 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+++|++||+.|-.++.-++ .-+..|.++++|.++|++.
T Consensus 118 l~~I~~fF~~YK~legk~~-----------~~v~g~~~~~~A~~~I~~~ 155 (184)
T PRK02230 118 LDEIEYFFSNYKNWKRKGI-----------TKVKGFEDEKWALKEYKEC 155 (184)
T ss_pred HHHHHHHHHHhcCCCCCCe-----------EEeCCccCHHHHHHHHHHH
Confidence 3789999998854331111 1256688899888888764
No 317
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=25.77 E-value=55 Score=30.56 Aligned_cols=19 Identities=16% Similarity=0.253 Sum_probs=15.7
Q ss_pred cEEEEEEcCHHHHHHHHHH
Q 023632 64 GFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 64 G~aFV~F~s~e~a~~Ai~~ 82 (279)
-|++|.|-++++|++-.+.
T Consensus 213 ~y~DiifgNe~EA~af~~~ 231 (343)
T KOG2854|consen 213 PYADIIFGNEDEAAAFARA 231 (343)
T ss_pred CcceEEEcCHHHHHHHHHh
Confidence 4899999999998876665
No 318
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=25.53 E-value=1.8e+02 Score=28.37 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=34.2
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
+++|+.-.+. ....+.++.++||+|..+.+-.. -+|...+++.++.++..
T Consensus 42 ~G~l~~~~~~-~~~~~~~~~~~yG~i~~~~~g~~---------~~vvv~dpe~~~~vl~~ 91 (504)
T PLN00110 42 LGALPLLGNM-PHVALAKMAKRYGPVMFLKMGTN---------SMVVASTPEAARAFLKT 91 (504)
T ss_pred eechhhcCCc-hHHHHHHHHHHhCCeEEEEcCCc---------cEEEECCHHHHHHHHHh
Confidence 6776543221 12567788889999877665322 25888899999998876
No 319
>PRK02886 hypothetical protein; Provisional
Probab=25.53 E-value=1.8e+02 Score=21.69 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=25.4
Q ss_pred HhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 42 FMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 42 F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
+.+||.|.-+. .+.+ |+ |.|.|.++|++.++.|...
T Consensus 21 LrkyG~I~Y~S-------kr~k-Yv-vlYvn~~~~e~~~~kl~~l 56 (87)
T PRK02886 21 LRKFGNVHYVS-------KRLK-YA-VLYCDMEQVEDIMNKLSSL 56 (87)
T ss_pred HhhcCcEEEEe-------cccc-EE-EEEECHHHHHHHHHHHhcC
Confidence 47899988762 1211 44 5688999999999988554
No 320
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=25.46 E-value=1.6e+02 Score=20.60 Aligned_cols=58 Identities=10% Similarity=0.178 Sum_probs=32.4
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCC---eEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHHcCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKGNK 85 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~lng 85 (279)
|.-....+++ ..|.++..+|+. |..-.|-. -.+++-|.-+|++. +.+++++|++.|..
T Consensus 7 l~f~g~~~~~---piis~l~~~~~v~~nIl~g~i~~--i~~~~~G~l~l~l~g~~~~~~~a~~~L~~ 68 (76)
T PF09383_consen 7 LTFTGNSAQE---PIISQLIREFGVDVNILHGNIEE--IQGTPFGILILELPGDDEEIEKAIAYLRE 68 (76)
T ss_dssp EEEESCSSSS---CHHHHHHHHHT-EEEEEEEEEEE--ETTEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred EEEcCCCcCc---hHHHHHHHHhCCCEEEEEEEeEE--cCCeeEEEEEEEEECCHHHHHHHHHHHHH
Confidence 4434455666 445555555543 22222222 24556788889995 45667888888743
No 321
>PRK11370 YciI-like protein; Reviewed
Probab=25.34 E-value=2.9e+02 Score=20.54 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=19.0
Q ss_pred cEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 64 GFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 64 G~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
.+-.++|+|.++|++.++. +.....+
T Consensus 59 ~~ii~ea~s~~~a~~~~~~-DPy~~aG 84 (99)
T PRK11370 59 STVIAEFESLEAAQAWADA-DPYVAAG 84 (99)
T ss_pred eEEEEEECCHHHHHHHHHC-CchhhcC
Confidence 3566699999999999887 4444444
No 322
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=25.20 E-value=73 Score=26.01 Aligned_cols=19 Identities=5% Similarity=0.009 Sum_probs=16.2
Q ss_pred eeCCCCCCCcccHHHHHHHHhc
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQ 44 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~ 44 (279)
|.|+|.+++. +.|.++++.
T Consensus 82 i~n~Py~~~~---~~i~~~l~~ 100 (169)
T smart00650 82 VGNLPYNIST---PILFKLLEE 100 (169)
T ss_pred EECCCcccHH---HHHHHHHhc
Confidence 9999999988 888888764
No 323
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.05 E-value=1.5e+02 Score=22.31 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=35.7
Q ss_pred CCCCceeeeCCCCCCCcccHHHHHHHHhcCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 16 QTTTQKMTGLSLTPVTEPALDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 16 ~~~~~~lV~nLp~~~te~~~~~L~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
...+..||=.+-+.+++ ..|..-|..-+.- +...+-+| .=+.+|.|+|.+.+.+.+|.+.|
T Consensus 10 nl~t~QVlYS~~p~l~~---~~i~~Q~~~~gkk~~pp~lRkD----~W~pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 10 NLETNQVLYSQTPNLDN---NQILKQFPFPGKKNKPPSLRKD----YWRPMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred ecccCCEEEecCcccCh---hHHHHhccCCCcccCCchhccc----cceEeEEEECCChHHHHHHHHHH
Confidence 34455554445556666 6666555433321 11122222 22568999999999999998876
No 324
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=24.88 E-value=94 Score=25.56 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=25.4
Q ss_pred HHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHH
Q 023632 38 FKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 38 L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~A 79 (279)
-+++|+.|- +|.+|.+.++...-+-+....|...+..+.+++
T Consensus 104 Ar~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 104 ARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred HHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 367888884 678888877654234445555655554444443
No 325
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=24.71 E-value=2.5e+02 Score=27.51 Aligned_cols=52 Identities=12% Similarity=0.155 Sum_probs=33.9
Q ss_pred HHHHHHHhcCC----CeEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHHcCCCccCCceeEEe
Q 023632 36 DEFKDFFMQFG----DVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 36 ~~L~~~F~~~G----~V~~v~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
++|++-++++- ..+.+.+- ++ -++|.|. +++.++++|+.+. ....++.|.|.
T Consensus 309 e~i~~~l~~~~~v~GRmE~v~~~-~~-------~v~VDyAHnPd~le~~L~~~~-~~~~g~li~Vf 365 (475)
T COG0769 309 EDILAGLETLKPVPGRMELVNIG-GK-------LVIVDYAHNPDGLEKALRAVR-LHAAGRLIVVF 365 (475)
T ss_pred HHHHHHHHhcCCCCCcceEecCC-CC-------eEEEEeccChHHHHHHHHHHH-hhcCCcEEEEE
Confidence 77777777664 33444332 22 6889996 8999999999986 22345655554
No 326
>PF03802 CitX: Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase; InterPro: IPR005551 Members of this protein family are annotated as CitX, containing the CitX domain, the domain is also found in the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25 from EC), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.; GO: 0051191 prosthetic group biosynthetic process
Probab=24.59 E-value=4.1e+02 Score=22.11 Aligned_cols=74 Identities=12% Similarity=0.158 Sum_probs=43.4
Q ss_pred eeCCCCCCCcccH---------HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE-cCHHHHHHHHHHcCCCccCCce
Q 023632 23 TGLSLTPVTEPAL---------DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 23 V~nLp~~~te~~~---------~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F-~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.-|+|=.+...++ +.|.+.|.....+...+...+..|+- .+|+.. .++..+++++..+.....-++.
T Consensus 34 tlNiPG~iK~~~~~~~~f~~~~~~l~~~l~~~~~~~~~~~~~~~~tGp---e~~~~v~~~a~~vK~~~i~iEe~hplGRL 110 (170)
T PF03802_consen 34 TLNIPGPIKNNPLIRRIFDEGIEALEQQLSANGIFKLEQEILNDPTGP---EAFLVVDGDAEEVKRIMIEIEESHPLGRL 110 (170)
T ss_pred EEEccccccCCHHHHHHHHHHHHHHHHHHHHcCCeEeeeeeeecCCcc---eeeEEeCCCHHHHHHHHHHHHccCcchhe
Confidence 4488876664211 34444555544443332222333553 455555 4788888888888777778888
Q ss_pred eEEeecc
Q 023632 93 VEVKKAE 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
+.++.-.
T Consensus 111 ~DiDV~~ 117 (170)
T PF03802_consen 111 FDIDVLD 117 (170)
T ss_pred EEEeeec
Confidence 8777653
No 327
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=24.46 E-value=56 Score=27.67 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++|+++|..|-.++. + |-+-...|.+++.|.++|++.
T Consensus 133 ~eI~~fF~~YK~le~---------g--k~~~v~g~~~~~~A~~~I~~~ 169 (176)
T PRK01250 133 AQIKHFFEHYKDLEK---------G--KWVKVEGWGGAEEAKAEIVEA 169 (176)
T ss_pred HHHHHHHHHhcCCCC---------C--CCEEecCccCHHHHHHHHHHH
Confidence 788999998854431 1 112234578999999988763
No 328
>smart00457 MACPF membrane-attack complex / perforin.
Probab=24.32 E-value=1.5e+02 Score=25.01 Aligned_cols=27 Identities=7% Similarity=0.176 Sum_probs=22.4
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCC--eEEEE
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGD--VQEHQ 52 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~--V~~v~ 52 (279)
|..||..++. .++.+||++||. |+++.
T Consensus 30 l~~Lp~~~~~---~~~~~fi~~yGTH~i~s~~ 58 (194)
T smart00457 30 LRDLPDQYNR---GAYARFIDKYGTHYITSAT 58 (194)
T ss_pred HHhCccccCH---HHHHHHHHHhCCeEEEeee
Confidence 7799999998 899999999996 44443
No 329
>PF09612 HtrL_YibB: Bacterial protein of unknown function (HtrL_YibB); InterPro: IPR011735 The protein from this rare, uncharacterised protein family is designated HtrL or YibB in Escherichia coli, where its gene is found in a region of LPS core biosynthesis genes []. Homologs are found in Shigella flexneri, Campylobacter jejuni, and Caenorhabditis elegans only. The htrL gene may represent an insertion to the LPS core biosynthesis region, rather than an LPS biosynthetic protein.
Probab=24.30 E-value=77 Score=28.75 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=35.4
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
|+..++..-+.+.++-.++|+...+|+. .+|.|.|++.++..++.-..+.|.++++
T Consensus 14 iGrg~~~~~~r~~~~Y~~yf~~la~L~N---------------~mVIfTd~~~~e~I~~iR~~~~L~~Ktt 69 (271)
T PF09612_consen 14 IGRGDWKYYTRTNETYFEYFEFLAKLKN---------------NMVIFTDESSKEFIKKIRKKHGLEDKTT 69 (271)
T ss_pred cCCCCcccccccHHHHHHHHHHHHhhcC---------------CEEEEEChHHHHHHHHHHHhcCcCCCce
Confidence 6666665555334666677776655443 2578888888887777655555666665
No 330
>PLN02655 ent-kaurene oxidase
Probab=24.15 E-value=1.4e+02 Score=28.60 Aligned_cols=38 Identities=5% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
..|.+++++||+|..+.+... -.|...+++.++.++.+
T Consensus 23 ~~~~~~~~~yG~i~~~~~g~~---------~~vvv~~pe~~k~il~~ 60 (466)
T PLN02655 23 RTFTKWSEIYGPIYTIRTGAS---------SVVVLNSTEVAKEAMVT 60 (466)
T ss_pred HHHHHHHHHhCCeEEEEECCE---------eEEEeCCHHHHHHHHHh
Confidence 678888999999877765422 35777899999998875
No 331
>PRK00136 rpsH 30S ribosomal protein S8; Validated
Probab=24.08 E-value=54 Score=26.15 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=23.4
Q ss_pred eeeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeec
Q 023632 22 MTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRD 56 (279)
Q Consensus 22 lV~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d 56 (279)
.|. +|.+-.. .+|.+++.+.|-|..+++..+
T Consensus 23 ~v~-ip~sk~~---~~il~iL~~eGyI~~~~~~~~ 53 (130)
T PRK00136 23 TVS-MPASKLK---VAIAEILKEEGYIKDYEVEED 53 (130)
T ss_pred eEE-ecccHHH---HHHHHHHHHCCcccceEEEec
Confidence 354 7776555 788889999999999887654
No 332
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=23.62 E-value=2e+02 Score=24.33 Aligned_cols=61 Identities=8% Similarity=0.092 Sum_probs=38.9
Q ss_pred CCceeeeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHc
Q 023632 18 TTQKMTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 18 ~~~~lV~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+.-++|.|.+.-.+- ..|.+.|...|. +|.++.-+.+ ..+..+-.|.+++.+++.+++..+
T Consensus 18 D~VR~ItN~SSG~~G---~~lA~~~~~~Ga--~V~li~g~~~~~~p~~~~~i~v~sa~em~~~~~~~ 79 (185)
T PF04127_consen 18 DPVRFITNRSSGKMG---AALAEEAARRGA--EVTLIHGPSSLPPPPGVKVIRVESAEEMLEAVKEL 79 (185)
T ss_dssp SSSEEEEES--SHHH---HHHHHHHHHTT---EEEEEE-TTS----TTEEEEE-SSHHHHHHHHHHH
T ss_pred CCceEecCCCcCHHH---HHHHHHHHHCCC--EEEEEecCccccccccceEEEecchhhhhhhhccc
Confidence 334448888887777 788888887775 4444544422 225678999999999999988864
No 333
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=23.57 E-value=2e+02 Score=21.78 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCCe--E---EEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 023632 36 DEFKDFFMQFGDV--Q---EHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 80 (279)
Q Consensus 36 ~~L~~~F~~~G~V--~---~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai 80 (279)
..+...|++||-- . +++.+.. +..+.-...|+|+|.+.|..+.
T Consensus 23 ~~~~~a~~~~Ggr~LvRGG~v~~lEG--~w~ptr~vviEFps~~~ar~~y 70 (96)
T COG5470 23 SKAKPAIEKFGGRYLVRGGEVETLEG--EWRPTRNVVIEFPSLEAARDCY 70 (96)
T ss_pred HHhHHHHHHhCCeeEeeCCCeeeccC--CCCcccEEEEEcCCHHHHHHHh
Confidence 3456678888641 1 2222222 2333457899999998887654
No 334
>PHA03075 glutaredoxin-like protein; Provisional
Probab=23.36 E-value=3.8e+02 Score=21.22 Aligned_cols=32 Identities=19% Similarity=0.396 Sum_probs=19.1
Q ss_pred HHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc
Q 023632 37 EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 71 (279)
Q Consensus 37 ~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~ 71 (279)
-|.++|+.++.-.-..+..|++|++ .|||.|.
T Consensus 58 lInn~~~~lgne~v~lfKydp~t~q---mA~V~i~ 89 (123)
T PHA03075 58 LINNFFKHLGNEYVSLFKYDPETKQ---MAFVDIS 89 (123)
T ss_pred hHHHHHHhhcccEEEEEEEcCCCCc---EEEEehh
Confidence 4667777777422233445666654 7888764
No 335
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=23.24 E-value=3.8e+02 Score=23.41 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=16.3
Q ss_pred eeCCCCC------CCcccHHHHHHHHhcCCC
Q 023632 23 TGLSLTP------VTEPALDEFKDFFMQFGD 47 (279)
Q Consensus 23 V~nLp~~------~te~~~~~L~~~F~~~G~ 47 (279)
|.|..+. -++.|.+.|+++|++.+=
T Consensus 14 I~n~~f~~~~~r~g~~~D~~~l~~~f~~lgF 44 (241)
T smart00115 14 INNENFHSLPRRNGTDVDAENLTELFQSLGY 44 (241)
T ss_pred EECccCCCCcCCCCcHHHHHHHHHHHHHCCC
Confidence 6665432 233455889999998875
No 336
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=23.14 E-value=1.7e+02 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=14.0
Q ss_pred EEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 69 TFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 69 ~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
-|.+-++.+.|.++++ .+++..|.=+
T Consensus 79 aFV~F~~~e~A~~Al~--~lng~~i~Gr 104 (144)
T PLN03134 79 GFVNFNDEGAATAAIS--EMDGKELNGR 104 (144)
T ss_pred EEEEECCHHHHHHHHH--HcCCCEECCE
Confidence 3444566666666653 4556555433
No 337
>PLN02738 carotene beta-ring hydroxylase
Probab=23.13 E-value=1.7e+02 Score=29.81 Aligned_cols=39 Identities=10% Similarity=0.316 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
...|++++++||+|..|.+-.. -+|...|++.++.++..
T Consensus 154 ~~~l~~lh~kYGpI~ri~lGp~---------~~vvIsDpe~i~eIl~~ 192 (633)
T PLN02738 154 FIPLYELFLTYGGIFRLTFGPK---------SFLIVSDPSIAKHILRD 192 (633)
T ss_pred HHHHHHHHHHhCCEEEEEeCCC---------CEEEECCHHHHHHHHhh
Confidence 3678889999999987765332 25788899999888864
No 338
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=23.13 E-value=1.3e+02 Score=19.04 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=19.9
Q ss_pred ecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 55 RDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 55 ~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.+..|++.+-.----|.+..+|++++.++
T Consensus 9 ~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~ 37 (46)
T PF14657_consen 9 YDDETGKRKQKTKRGFKTKKEAEKALAKI 37 (46)
T ss_pred EECCCCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 45557766544443489999999988775
No 339
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=23.07 E-value=3.8e+02 Score=22.07 Aligned_cols=49 Identities=12% Similarity=0.300 Sum_probs=31.6
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
.+|-.+|.+.+ .|.++.+....+.+.++ +.++.-.+++.+++.+++|+.
T Consensus 16 ~rI~~lf~rrg~NI~Sl~v~~t~~~~~sr-iti~V~~d~~~i~qi~kQl~K 65 (157)
T TIGR00119 16 SRVAGLFTRRGFNIESLTVGPTEDPDLSR-MTIVVVGDDKVLEQITKQLNK 65 (157)
T ss_pred HHHHHHHHhCCceEEEEEEeecCCCCEEE-EEEEEECCHHHHHHHHHHHhc
Confidence 56888888776 56777655442233333 555555678888888888865
No 340
>PRK12863 YciI-like protein; Reviewed
Probab=23.05 E-value=3.1e+02 Score=20.11 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=22.8
Q ss_pred cEEEEEEcCHHHHHHHHHHcCCCccCCc--eeEEee
Q 023632 64 GFGFITFDTEQAVDDLLAKGNKLELAGA--QVEVKK 97 (279)
Q Consensus 64 G~aFV~F~s~e~a~~Ai~~lng~~l~g~--~i~V~~ 97 (279)
++..++.+|.++|++.++. +.....+. .++|..
T Consensus 52 ~~~i~~a~~~eea~~~~~~-DP~~~~G~~~~~~I~~ 86 (94)
T PRK12863 52 SLVVVEAESRAAAEAFAAA-DPFAKAGLYESVDIKP 86 (94)
T ss_pred eEEEEEeCCHHHHHHHHHc-CChhhcCCeeEEEEEE
Confidence 4555688999999888887 56555553 455543
No 341
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.01 E-value=3.3e+02 Score=22.64 Aligned_cols=47 Identities=13% Similarity=0.145 Sum_probs=27.4
Q ss_pred CeEEEEEeecCCCCCcccEEEEEE--cCHHHHHHHHHHcCCCccCCceeEE
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITF--DTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F--~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.|+++.+......+.+ .|.++| ..+++.++|+..++-....-..|-|
T Consensus 115 ~vvDl~L~Mp~~e~~S--sA~iti~a~~~e~l~ea~~~l~ev~~eK~Ll~I 163 (170)
T COG2061 115 EVVDLSLSMPGIEGES--SARITIIAVGKEKLDEALRRLKEVAMEKDLLLI 163 (170)
T ss_pred EEEEEEeecCCCCCCc--ceeEEEEEcChhHHHHHHHHHHHHHhhcCcEEE
Confidence 6777766554334444 344444 5788999999887544333333333
No 342
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=22.84 E-value=2.1e+02 Score=25.58 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=25.5
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHS 58 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~ 58 (279)
|.++|.+-..+.-.+|++.|..-+.-..|.|+.|..
T Consensus 6 i~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des 41 (281)
T KOG3062|consen 6 ICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES 41 (281)
T ss_pred EeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh
Confidence 889998755444478999998776544677776643
No 343
>cd01212 JIP JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JNK-interacting protein (JIP) Phosphotyrosine-binding (PTB) domain. JIP is a mitogen-activated protein kinase scaffold protein. JIP consists of a C-terminal SH3 domain, followed by a PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.83 E-value=64 Score=26.44 Aligned_cols=7 Identities=86% Similarity=1.322 Sum_probs=3.2
Q ss_pred ccEEEEE
Q 023632 63 RGFGFIT 69 (279)
Q Consensus 63 rG~aFV~ 69 (279)
|-|+||+
T Consensus 92 r~F~FIa 98 (148)
T cd01212 92 RYFGFIT 98 (148)
T ss_pred cEEEEEe
Confidence 3455543
No 344
>TIGR03124 ctirate_citX holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems.
Probab=22.82 E-value=4.5e+02 Score=21.89 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=39.2
Q ss_pred eCCCCCCCcccH---------HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE-cCHHHHHHHHHHcCCCccCCcee
Q 023632 24 GLSLTPVTEPAL---------DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 24 ~nLp~~~te~~~---------~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F-~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
-|+|=.++..++ +.|++.|...+-........+..|+. .+|+.. .+++++++++-.+.....-+|-+
T Consensus 33 lniPGpvK~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~tG~---E~~~~v~~~a~~vK~~~i~iEe~hplGRL~ 109 (165)
T TIGR03124 33 LNIPGPIKNNELLRRVFDIGIKAIEALLAKNGWTILVQQALNEATGP---EAFLVVDAPALELKRLMIKLEESHPLGRLW 109 (165)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeeeeccCCCCc---EEEEEeCCCHHHHHHHHHHHHhCCchhhhe
Confidence 478877665211 33444444333222212222334553 455554 47788888887777777778877
Q ss_pred EEeec
Q 023632 94 EVKKA 98 (279)
Q Consensus 94 ~V~~a 98 (279)
.++.-
T Consensus 110 DlDV~ 114 (165)
T TIGR03124 110 DIDVL 114 (165)
T ss_pred eheee
Confidence 77643
No 345
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=22.67 E-value=4e+02 Score=21.38 Aligned_cols=44 Identities=16% Similarity=0.037 Sum_probs=34.0
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH-Hc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~-~l 83 (279)
+++.+.+.++-.|..|..+ |+...=++-|.+.|.++++..+. .+
T Consensus 84 ~~~~~~l~~~p~V~~~~~~----tG~~dl~~~v~~~d~~~l~~~~~~~l 128 (153)
T PRK11179 84 PSALAKLESLDEVVEAYYT----TGHYSIFIKVMCRSIDALQHVLINKI 128 (153)
T ss_pred HHHHHHHhCCCCEEEEEEc----ccCCCEEEEEEECCHHHHHHHHHHHh
Confidence 6677778888888888776 45556688899999999998763 44
No 346
>COG2004 RPS24A Ribosomal protein S24E [Translation, ribosomal structure and biogenesis]
Probab=22.58 E-value=1.8e+02 Score=22.56 Aligned_cols=47 Identities=17% Similarity=0.343 Sum_probs=26.0
Q ss_pred CCCCcccHHHHHHHHh-cCCCeEEEEEeecCC----CCCcccEEEEEEcCHHHHHH
Q 023632 28 TPVTEPALDEFKDFFM-QFGDVQEHQIMRDHS----TSRSRGFGFITFDTEQAVDD 78 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~-~~G~V~~v~i~~d~~----tg~~rG~aFV~F~s~e~a~~ 78 (279)
.+.+. ++|++.+. .++.=+++.|+..-. .+++++||-| |+|.+.|.+
T Consensus 30 ~TPSr---~evrekla~~l~~d~e~VvV~~ikt~fG~~~s~g~akI-Y~s~e~~~~ 81 (107)
T COG2004 30 PTPSR---KEVREKLAAMLGADKELVVVDYIKTEFGKGRSKGYAKI-YDSVERAKK 81 (107)
T ss_pred CCCCH---HHHHHHHHHHHCCCcceEEEEehhhhcCCcceeEEEEE-ECCHHHHHh
Confidence 44555 67776654 445434444443322 4567777765 677766543
No 347
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=22.38 E-value=2.7e+02 Score=19.19 Aligned_cols=47 Identities=11% Similarity=0.238 Sum_probs=27.5
Q ss_pred CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 30 VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 30 ~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
.+++.+++|++++.++|....+....++ +..=-|++.+ +++.+-+++
T Consensus 29 ~s~~ll~~v~~lL~~lGi~~~i~~~~~~-----~~~y~l~i~~-~~~~~f~~~ 75 (77)
T PF14528_consen 29 KSKELLEDVQKLLLRLGIKASIYEKKRK-----KGSYRLRISG-KSLKRFLEK 75 (77)
T ss_dssp S-HHHHHHHHHHHHHTT--EEEEEEECT-----TTEEEEEEEC-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCeeEEEEEcCC-----CceEEEEECc-hHHHHHHHH
Confidence 3444557899999999977766543321 2233455666 777777665
No 348
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=22.37 E-value=95 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.6
Q ss_pred cEEEEEEcCHHHHHHHHHHcCC
Q 023632 64 GFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 64 G~aFV~F~s~e~a~~Ai~~lng 85 (279)
+|-||+++..+++..+|..+.+
T Consensus 60 GYvFv~~~~~~~~~~~i~~~~~ 81 (106)
T smart00738 60 GYIFVEADLEDEVWTAIRGTPG 81 (106)
T ss_pred CEEEEEEEeCCcHHHHHhcCCC
Confidence 8999999877777777777654
No 349
>PRK00549 competence damage-inducible protein A; Provisional
Probab=22.25 E-value=86 Score=30.11 Aligned_cols=24 Identities=4% Similarity=-0.122 Sum_probs=13.5
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcC
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQF 45 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~ 45 (279)
.++| +.+|++..-+ +.|.++...+
T Consensus 180 ~~~l~~~gi~Es~l~---~~L~~l~~~~ 204 (414)
T PRK00549 180 SRVLRFFGIGESQLA---TTLRDLIDNQ 204 (414)
T ss_pred EEEEEEcCCCHHHHH---HHHHHHHhcC
Confidence 3445 6666665555 5555654444
No 350
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=21.91 E-value=1.7e+02 Score=28.28 Aligned_cols=76 Identities=11% Similarity=0.112 Sum_probs=42.8
Q ss_pred cee-eeCCCCCCCc--ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEE---EEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 20 QKM-TGLSLTPVTE--PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGF---ITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 20 ~~l-V~nLp~~~te--~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aF---V~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.+| |.|++..-+. ..+++|.++++.......|.|..|. +.+| -...+++.++..|+.++...-..+..
T Consensus 269 V~IlLENmag~g~~lG~~~eeL~~Iid~v~~~~rlGvCLDT------cHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~ 342 (413)
T PTZ00372 269 VIIVLENTAGQKNSVGSKFEDLRDIIALVEDKSRVGVCLDT------CHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLK 342 (413)
T ss_pred CEEEEecCCCCCCcccCCHHHHHHHHHhcCCcCCeEEEEEH------HHHHhcCCCCCcHHHHHHHHHHHHHhcChhhee
Confidence 556 9998764321 1237899998877555567777772 2333 23456677777777654322113443
Q ss_pred EEeeccCC
Q 023632 94 EVKKAEPK 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
.|.....+
T Consensus 343 ~vHLNDSk 350 (413)
T PTZ00372 343 AVHLNDSK 350 (413)
T ss_pred EEEEEcCC
Confidence 44444443
No 351
>PLN03234 cytochrome P450 83B1; Provisional
Probab=21.87 E-value=2.8e+02 Score=26.66 Aligned_cols=59 Identities=10% Similarity=0.081 Sum_probs=36.9
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
|+|+..-...+....+.++.++||+|..++|... -.|...++|.++.++.. +...+..+
T Consensus 39 iG~~~~~~~~~~~~~~~~~~~~yG~~~~~~lg~~---------~~vvv~dpe~~~~il~~-~~~~f~~r 97 (499)
T PLN03234 39 IGNLHQMEKFNPQHFLFRLSKLYGPIFTMKIGGR---------RLAVISSAELAKELLKT-QDLNFTAR 97 (499)
T ss_pred eccHHhcCCCCccHHHHHHHHHcCCeEEEEecCc---------CEEEECCHHHHHHHHHh-CCccccCC
Confidence 6666432111111566777788999988776543 24788899999999876 33334333
No 352
>PF09250 Prim-Pol: Bifunctional DNA primase/polymerase, N-terminal; InterPro: IPR015330 Members of this family adopt a structure consisting of a core of antiparallel beta sheets. They are found in various bacterial hypothetical proteins, and have been shown to harbour both primase and polymerase activities []. ; PDB: 1RO0_A 1RNI_A 1RO2_A 3M1M_A.
Probab=21.76 E-value=2e+02 Score=22.94 Aligned_cols=33 Identities=9% Similarity=0.315 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHH
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e 74 (279)
++|+++|.++ .-..|-|++ ...++..|++++.+
T Consensus 35 ~~i~~~~~~~-~~~~igl~~-----~~~gl~viDiD~~~ 67 (163)
T PF09250_consen 35 EQIERWWRRY-PGANIGLVL-----GPSGLVVIDIDNKD 67 (163)
T ss_dssp HHHHHHHH---TT-EEEEES-----SGGGEEEEEES-HH
T ss_pred HHHHHHHhhC-CCceEEEEe-----cCCceEEEECCCcc
Confidence 8899999877 334454554 33679999999888
No 353
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=21.76 E-value=92 Score=26.24 Aligned_cols=37 Identities=14% Similarity=0.367 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++|+.+|+.|-.++.-+. .-..-|.+.++|++.|++.
T Consensus 129 ~~i~~ffe~yK~le~~k~-----------~~~~gw~~~~~A~~~i~~~ 165 (171)
T COG0221 129 DEIQHFFETYKDLEKGKW-----------VKVEGWEDAEEAKKEIKEA 165 (171)
T ss_pred HHHHHHHHHHHhcCCCcE-----------EEeccccCHHHHHHHHHHH
Confidence 667778887744332111 2234678888888888763
No 354
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=21.61 E-value=1.3e+02 Score=24.04 Aligned_cols=28 Identities=7% Similarity=0.026 Sum_probs=21.6
Q ss_pred CCCCCCcccHHHHHHHHhcCCCeEEEEEeec
Q 023632 26 SLTPVTEPALDEFKDFFMQFGDVQEHQIMRD 56 (279)
Q Consensus 26 Lp~~~te~~~~~L~~~F~~~G~V~~v~i~~d 56 (279)
|.+-.+. .||..+.+.|-.|+-|+|+..
T Consensus 24 lAFRPSN---~Dif~Lv~~CP~lk~iqiP~S 51 (131)
T PF08004_consen 24 LAFRPSN---KDIFSLVERCPNLKAIQIPPS 51 (131)
T ss_pred EEecCcc---hHHHHHHHhCCCCeEEeCChH
Confidence 4455566 778889999999998888754
No 355
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.45 E-value=3.9e+02 Score=20.70 Aligned_cols=61 Identities=10% Similarity=0.069 Sum_probs=30.8
Q ss_pred eeeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcc-cEEEEEEc-CHHHHHHHHHHcCC
Q 023632 22 MTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSR-GFGFITFD-TEQAVDDLLAKGNK 85 (279)
Q Consensus 22 lV~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~r-G~aFV~F~-s~e~a~~Ai~~lng 85 (279)
||--|+...-. |.++.++|+.++ |.-.+|..-+...+.. =.-||+++ +.+++++||+.|..
T Consensus 44 lifsl~~~pGs--L~~iL~~Fa~~g-INLt~IESRP~~~~~~eY~FfIdieg~~~~~~~aL~~L~~ 106 (115)
T cd04930 44 LLFSLKEGFSS--LSRILKVFETFE-AKIHHLESRPSRKEGGDLEVLVRCEVHRSDLLQLISSLRQ 106 (115)
T ss_pred EEEEeCCCCcH--HHHHHHHHHHCC-CCEEEEECCcCCCCCceEEEEEEEEeCHHHHHHHHHHHHH
Confidence 34445554333 366777777775 3333333332212221 13456665 45567888887743
No 356
>PF13068 DUF3932: Protein of unknown function (DUF3932)
Probab=21.44 E-value=19 Score=25.27 Aligned_cols=21 Identities=5% Similarity=0.112 Sum_probs=17.7
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFG 46 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G 46 (279)
|.+-|..+.| ..|+++...|-
T Consensus 23 vsdhpaql~w---ttlkeliheyt 43 (81)
T PF13068_consen 23 VSDHPAQLEW---TTLKELIHEYT 43 (81)
T ss_pred hcCCccccch---hHHHHHHHHHh
Confidence 8889999999 88888887764
No 357
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=21.43 E-value=1.1e+02 Score=31.06 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE-----cCHHHHHHHHHHc
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-----DTEQAVDDLLAKG 83 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F-----~s~e~a~~Ai~~l 83 (279)
++.+.| ..++.+-.++ .-.+..-+...|++++++|+.+-. .+|+.| +..+.+++||+.|
T Consensus 787 LPp~~i~ac~mDP~LDD--~vmfA~kLr~lG~~v~l~vle~lP------HGFLnft~ls~E~~~~~~~CI~rl 851 (880)
T KOG4388|consen 787 LPPVHIVACAMDPMLDD--SVMFARKLRNLGQPVTLRVLEDLP------HGFLNFTALSRETRQAAELCIERL 851 (880)
T ss_pred CCCceEEEeccCcchhH--HHHHHHHHHhcCCceeehhhhcCC------ccceeHHhhCHHHHHHHHHHHHHH
Confidence 334455 5566655554 134556677889999999987742 566777 3456677777775
No 358
>PRK12450 foldase protein PrsA; Reviewed
Probab=21.37 E-value=1.7e+02 Score=26.89 Aligned_cols=39 Identities=8% Similarity=0.298 Sum_probs=28.8
Q ss_pred CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 29 PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 29 ~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.||+ ++|++++..+-+ +++ ...|.+++++.|+++++.|.
T Consensus 132 ~Vtd---~evk~~y~~~~~--~~~------------~~~I~~~~~~~A~~i~~~l~ 170 (309)
T PRK12450 132 TISK---KDYRQAYDAYTP--TMT------------AEIMQFEKEEDAKAALEAVK 170 (309)
T ss_pred CCCH---HHHHHHHHHhCc--cce------------eEEEEeCCHHHHHHHHHHHH
Confidence 4789 999999987632 111 12477889999999999984
No 359
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=21.36 E-value=81 Score=29.99 Aligned_cols=29 Identities=17% Similarity=-0.001 Sum_probs=18.1
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEe
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIM 54 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~ 54 (279)
|....+..+ +++|+++|+++|--..+.+.
T Consensus 164 ig~~~~~~d---~~el~~lL~~~Gl~v~~~~~ 192 (410)
T cd01968 164 IGEFNVAGE---LWGVKPLLEKLGIRVLASIT 192 (410)
T ss_pred ECCCCCccc---HHHHHHHHHHcCCeEEEEeC
Confidence 554444333 48999999999854333343
No 360
>PRK13014 methionine sulfoxide reductase A; Provisional
Probab=21.08 E-value=2e+02 Score=24.53 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=13.4
Q ss_pred eeCCCCCCCcccHHHHHHHHhcC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQF 45 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~ 45 (279)
|.-=|..++- ++|.++|-+.
T Consensus 64 V~yDp~~iSy---~~LL~~Ff~~ 83 (186)
T PRK13014 64 ITYDPKQVSY---ENLLQIFFST 83 (186)
T ss_pred EEECCCcCCH---HHHHHHHHHh
Confidence 6555666776 7887777553
No 361
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.00 E-value=4.2e+02 Score=25.91 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=35.9
Q ss_pred CCCcccHHHHHHHHhcCCCeEEEEEeecCCC-CCcccEEEEEEc-------CHHHHHHHHHH
Q 023632 29 PVTEPALDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFD-------TEQAVDDLLAK 82 (279)
Q Consensus 29 ~~te~~~~~L~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFV~F~-------s~e~a~~Ai~~ 82 (279)
++.. ++|++++.+.-.|.++.++--++. --.+..|||+-. +++++.+.|+.
T Consensus 433 ni~p---~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~~~~~ 491 (534)
T COG0318 433 NIYP---EEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRK 491 (534)
T ss_pred EECH---HHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHHHHHh
Confidence 4555 789999998888988877654432 344678899886 56666666665
No 362
>PRK07377 hypothetical protein; Provisional
Probab=20.96 E-value=1.6e+02 Score=25.01 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.6
Q ss_pred EEEEcCHHHHHHHHHHc
Q 023632 67 FITFDTEQAVDDLLAKG 83 (279)
Q Consensus 67 FV~F~s~e~a~~Ai~~l 83 (279)
+|+|+|.+++++|+...
T Consensus 112 lv~y~~~~~l~~aL~~~ 128 (184)
T PRK07377 112 LVVYPDLQALEQALRDK 128 (184)
T ss_pred EEecCCHHHHHHHHhcC
Confidence 68999999999998764
No 363
>TIGR03272 methan_mark_6 putative methanogenesis marker protein 6. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.90 E-value=4.5e+02 Score=21.15 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=22.2
Q ss_pred ccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 63 RGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
.+|+.+.=-.+++++++++++. .++-..|.|+
T Consensus 30 TCfG~~i~G~~e~V~~~v~~iR--~ld~~~IF~K 61 (132)
T TIGR03272 30 TCFGAIITGPEEEVMKVAERIR--ELDPNHIFVK 61 (132)
T ss_pred eeeeeeeeCCHHHHHHHHHHHH--hhCCCceEee
Confidence 4577777778899999998873 3445555554
No 364
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=20.89 E-value=29 Score=26.43 Aligned_cols=45 Identities=22% Similarity=0.407 Sum_probs=26.6
Q ss_pred eeCCCCCCCcccHHHHHH----HHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHH-HHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKD----FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQA-VDDLLAK 82 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~----~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~-a~~Ai~~ 82 (279)
|..||+.++. +.||+ ++..| .|++++. -|||+|+...+ .+.+|++
T Consensus 26 l~~LP~la~S---~~~KD~I~q~m~~F---------~dp~~G~---pAF~s~~QQ~~mlq~~l~k 75 (120)
T PRK15321 26 LLALPESASS---ETLKDSIYQEMNAF---------KDPNSGD---SAFVSFEQQTAMLQNMLAK 75 (120)
T ss_pred HHhCCcccCc---HHHHHHHHHHHHHh---------CCCCCCC---cccccHHHHHHHHHHHHHh
Confidence 6778887776 55554 33333 3444555 48999985443 4445544
No 365
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=20.68 E-value=1.1e+02 Score=29.59 Aligned_cols=57 Identities=12% Similarity=0.156 Sum_probs=28.8
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHh---cCCCeEEEEEeecCCCCCcccEEEE-EEcCHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFM---QFGDVQEHQIMRDHSTSRSRGFGFI-TFDTEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~---~~G~V~~v~i~~d~~tg~~rG~aFV-~F~s~e~a~~Ai~~l 83 (279)
++| |.-||..++. +++++.+. +-+.|+ |.=++|. |.+ ++-|| ++....++++.++.|
T Consensus 217 ~~i~ITELP~~~~t---~~~~e~i~~l~~~~~i~-I~d~~D~-Sd~--~v~ivI~lk~~~~~~~~~~~L 278 (426)
T PF00521_consen 217 NTIVITELPYGVWT---EKYKEKIEELVEDKKIK-ISDYRDE-SDR--GVRIVIELKRGADPEKILEGL 278 (426)
T ss_dssp EEEEEEE--TT--H---HHHHHHHHHHHHTTSST-EEEEEE--BBT--BS-EEEEESTTSHHHHHHHHH
T ss_pred cEEEEEeCCccccH---HHHHHHHHHHhccCcch-hhHHHhc-CCC--ceeEEEEecCCccHHHHHHHH
Confidence 688 9999999887 55554443 334566 5555564 444 55554 555544455555443
No 366
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=20.64 E-value=63 Score=25.52 Aligned_cols=46 Identities=22% Similarity=0.360 Sum_probs=27.9
Q ss_pred CCCCCCcccHHHHHHHHhc---CCCeEEEEEeecCCCCCcccEEEEEEcCHH
Q 023632 26 SLTPVTEPALDEFKDFFMQ---FGDVQEHQIMRDHSTSRSRGFGFITFDTEQ 74 (279)
Q Consensus 26 Lp~~~te~~~~~L~~~F~~---~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e 74 (279)
-|..+|. .+|+++|+. |--|..-.|.+|-...-+--.||+.|....
T Consensus 82 ~PYTlT~---~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~~ 130 (145)
T TIGR02542 82 PPYTLTY---NELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNATQ 130 (145)
T ss_pred CceeeeH---HHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccch
Confidence 3557788 899999964 333444344444333334457888887653
No 367
>PF07357 DRAT: Dinitrogenase reductase ADP-ribosyltransferase (DRAT); InterPro: IPR009953 This family consists of several bacterial dinitrogenase reductase ADP-ribosyltransferase (DRAT) proteins. Members of this family seem to be specific to Rhodospirillum, Rhodobacter and Azospirillum species. Dinitrogenase reductase ADP-ribosyl transferase (DRAT) carries out the transfer of the ADP-ribose from NAD to the Arg-101 residue of one subunit of the dinitrogenase reductase homodimer, resulting in inactivation of that enzyme. Dinitrogenase reductase-activating glycohydrolase (DRAG) removes the ADP-ribose group attached to dinitrogenase reductase, thus restoring nitrogenase activity. The DRAT-DRAG system negatively regulates nitrogenase activity in response to exogenous NH4+ or energy limitation in the form of a shift to darkness or to anaerobic conditions [].
Probab=20.60 E-value=1.4e+02 Score=26.88 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=27.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecC
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDH 57 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~ 57 (279)
...+.| +.||..-+++ .|+...|..+ |.+++|+..|
T Consensus 194 ~r~~vvrLNNL~SFtsd---re~A~eFGd~--Ile~~VPl~K 230 (262)
T PF07357_consen 194 KREAVVRLNNLVSFTSD---RERADEFGDY--ILEVRVPLSK 230 (262)
T ss_pred CceEEEEecCccccccc---hHHHhhhCCE--EEEEeccceE
Confidence 345566 8999988888 7788777665 8888888654
No 368
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.59 E-value=2.6e+02 Score=18.27 Aligned_cols=46 Identities=7% Similarity=0.251 Sum_probs=25.1
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.+|-++|++.. .|.++.+..+. .......|++++.+.++++++.|.
T Consensus 15 ~~i~~~l~~~~~~i~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~L~ 61 (72)
T cd04874 15 RDLTGVIAEHGGNITYTQQFIER---EGKARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred HHHHHHHHhCCCCEEEEEEeccC---CCeEEEEEEEeccccHHHHHHHHh
Confidence 56777777764 46666554331 112234466665555556666653
No 369
>TIGR00401 msrA methionine-S-sulfoxide reductase. This model describes peptide methionine sulfoxide reductase (MsrA), a repair enzyme for proteins that have been inactivated by oxidation. The enzyme from E. coli is coextensive with this model and has enzymatic activity. However, in all completed genomes in which this module is present, a second protein module, described in TIGR00357, is also found, and in several cases as part of the same polypeptide chain: N-terminal to this module in Helicobacter pylori and Haemophilus influenzae (as in PilB of Neisseria gonorrhoeae) but C-terminal to it in Treponema pallidum. PilB, containing both domains, has been shown to be important for the expression of adhesins in certain pathogens.
Probab=20.44 E-value=1.4e+02 Score=24.41 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=11.5
Q ss_pred eeCCCCCCCcccHHHHHHHHhc
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQ 44 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~ 44 (279)
|.==|..++- ++|.++|-+
T Consensus 56 V~yDp~~is~---~~Ll~~f~~ 74 (149)
T TIGR00401 56 VTYDPKVISY---EELLDVFWE 74 (149)
T ss_pred EEECCCcCcH---HHHHHHHHH
Confidence 5444555665 777776654
No 370
>cd08367 P53 P53 DNA-binding domain. P53 is a tumor suppressor gene product; mutations in p53 or lack of expression are found associated with a large fraction of all human cancers. P53 is activated by DNA damage and acts as a regulator of gene expression that ultimatively blocks progression through the cell cycle. P53 binds to DNA as a tetrameric transcription factor. In its inactive form, p53 is bound to the ring finger protein Mdm2, which promotes its ubiquitinylation and subsequent proteosomal degradation. Phosphorylation of p53 disrupts the Mdm2-p53 complex, while the stable and active p53 binds to regulatory regions of its target genes, such as the cyclin-kinase inhibitor p21, which complexes and inactivates cdk2 and other cyclin complexes.
Probab=20.33 E-value=54 Score=27.81 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
+.|++||-+..+...|.+..+... ....=-|++.|.++|.+...|+....+
T Consensus 20 ~~LnKLfv~m~~~cp~~~~~~~~pp~~~~vRa~~Vy~~~e~~~~~V~RC~~H 71 (179)
T cd08367 20 PKLNKLFVKMAKTCPIQFKVNPSPPPGLYVRAMLVYKDPEHVKEPVERCPNH 71 (179)
T ss_pred hhhCEEEEecCCeEEEEEEEeeCCCCCcEEEEEEEEcChhhcCCCccccccc
Confidence 679999988888776666555432 222234789999998888888765443
No 371
>PF08503 DapH_N: Tetrahydrodipicolinate succinyltransferase N-terminal; InterPro: IPR013710 This domain is found at the N terminus of tetrahydrodipicolinate N-acetyltransferase (DapH) which catalyses the acylation of L-2-amino-6-oxopimelate to 2-N-acetyl-6-oxopimelate in the meso-diaminopimelate/lysine biosynthetic pathway of bacteria, blue-green algae, and plants []. The N-terminal domain as defined here contains three alpha-helices and two twisted hairpin loops []. ; GO: 0047200 tetrahydrodipicolinate N-acetyltransferase activity; PDB: 3CJ8_A 3BV8_A 3R8Y_F.
Probab=20.20 E-value=3.7e+02 Score=19.85 Aligned_cols=31 Identities=16% Similarity=0.256 Sum_probs=24.1
Q ss_pred EEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 67 FITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 67 FV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
.|.|-+.++++..|++ |...|....|+...-
T Consensus 44 ~vvfGd~~~i~~~Le~-~~~~I~~y~iE~drR 74 (83)
T PF08503_consen 44 GVVFGDWDEIKPFLEA-NKDKIEDYRIENDRR 74 (83)
T ss_dssp EEEEEEHHHHHHHHHH-TTTTEEEEEEEE-GB
T ss_pred EEEEecHHHHHHHHHh-chhhCcEEEEEecCc
Confidence 3789999999999998 677777777777543
No 372
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT). Telomerase is a ribonucleoprotein (RNP) that synthesizes telomeric DNA repeats. The telomerase RNA subunit provides the template for synthesis of these repeats. The catalytic subunit of RNP is known as telomerase reverse transcriptase (TERT). The reverse transcriptase (RT) domain is located in the C-terminal region of the TERT polypeptide. Single amino acid substitutions in this region lead to telomere shortening and senescence. Telomerase is an enzyme that, in certain cells, maintains the physical ends of chromosomes (telomeres) during replication. In somatic cells, replication of the lagging strand requires the continual presence of an RNA primer approximately 200 nucleotides upstream, which is complementary to the template strand. Since there is a region of DNA less than 200 base pairs from the end of the chromosome where this is not possible, the chromosome is continually shortened. However, a surplus of repetitive DNA at
Probab=20.15 E-value=2.3e+02 Score=21.70 Aligned_cols=34 Identities=6% Similarity=-0.125 Sum_probs=19.6
Q ss_pred EEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 68 ITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 68 V~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
|...++++|+++++.+....+....|+|...+.+
T Consensus 64 i~~~~~~~~~~~~~~l~~~l~~~~gl~iN~~Kt~ 97 (119)
T cd01648 64 LITTSLDKAIKFLNLLLRGFINQYKTFVNFDKTQ 97 (119)
T ss_pred EEeCCHHHHHHHHHHHHHhhHHhhCeEECcccce
Confidence 3345678888888876433224445555555443
No 373
>PF14751 DUF4474: Domain of unknown function (DUF4474)
Probab=20.07 E-value=1.9e+02 Score=25.74 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=28.8
Q ss_pred EEEEEEcCHHHHHHHHHHcC-------CCccCCceeEEeeccCCCCC
Q 023632 65 FGFITFDTEQAVDDLLAKGN-------KLELAGAQVEVKKAEPKKPN 104 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~ln-------g~~l~g~~i~V~~a~~~~~~ 104 (279)
.+-|+|.+++..++.++.|. ...|.+..|.+.+.+|+.+.
T Consensus 147 ~~~I~f~d~~M~~aF~~~l~~~GY~~~e~~i~gntv~~~f~~p~~~q 193 (241)
T PF14751_consen 147 DITIDFPDEEMWEAFIDGLKKAGYSEKEFSICGNTVSFHFDKPHTPQ 193 (241)
T ss_pred EEEEEeChHHHHHHHHHHHHHcCCCcceEEEeCCEEEEEeCCCCCCC
Confidence 46799999887777776652 24566888888888887643
Done!