Query 023632
Match_columns 279
No_of_seqs 472 out of 2384
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 10:09:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023632.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023632hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 2.4E-22 8.3E-27 165.0 12.3 84 17-103 37-121 (156)
2 4fxv_A ELAV-like protein 1; RN 99.9 4.5E-22 1.5E-26 151.8 11.0 81 17-100 17-98 (99)
3 2dgs_A DAZ-associated protein 99.9 3.5E-21 1.2E-25 146.0 12.5 90 14-107 5-95 (99)
4 2cpz_A CUG triplet repeat RNA- 99.9 1.7E-21 5.8E-26 151.8 10.9 91 15-108 21-112 (115)
5 1whw_A Hypothetical protein ri 99.9 3.6E-21 1.2E-25 145.9 12.2 88 15-105 4-92 (99)
6 3s8s_A Histone-lysine N-methyl 99.9 2.2E-21 7.4E-26 150.9 11.2 83 17-102 4-87 (110)
7 2dnz_A Probable RNA-binding pr 99.9 5.3E-21 1.8E-25 143.7 12.7 86 17-105 3-89 (95)
8 2dgo_A Cytotoxic granule-assoc 99.9 1.1E-20 3.9E-25 147.0 14.4 90 14-106 10-100 (115)
9 2cq0_A Eukaryotic translation 99.9 3.2E-21 1.1E-25 147.3 11.0 89 15-106 11-100 (103)
10 2dnm_A SRP46 splicing factor; 99.9 2.6E-21 8.8E-26 147.8 10.2 89 15-106 9-98 (103)
11 1x5s_A Cold-inducible RNA-bind 99.8 3.7E-21 1.3E-25 146.5 10.6 88 15-105 8-96 (102)
12 1x5u_A Splicing factor 3B subu 99.8 6.8E-21 2.3E-25 145.8 11.9 89 14-105 10-99 (105)
13 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3E-21 1E-25 147.0 9.5 90 15-107 8-98 (102)
14 2cph_A RNA binding motif prote 99.8 8.1E-21 2.8E-25 145.8 11.8 90 14-106 10-102 (107)
15 1x4h_A RNA-binding protein 28; 99.8 7.6E-21 2.6E-25 146.9 11.7 91 14-107 10-107 (111)
16 1p27_B RNA-binding protein 8A; 99.8 6.4E-21 2.2E-25 146.2 11.0 86 15-103 19-105 (106)
17 3ex7_B RNA-binding protein 8A; 99.8 4.5E-21 1.5E-25 151.7 10.4 90 13-105 16-106 (126)
18 2cpf_A RNA binding motif prote 99.8 6.8E-21 2.3E-25 144.0 10.7 87 17-106 3-93 (98)
19 2lxi_A RNA-binding protein 10; 99.8 1E-21 3.5E-26 147.4 6.0 83 19-104 1-86 (91)
20 2cqd_A RNA-binding region cont 99.8 1.8E-20 6.3E-25 146.2 13.3 88 14-105 12-100 (116)
21 1x5t_A Splicing factor 3B subu 99.8 6.4E-21 2.2E-25 143.5 10.1 86 17-105 3-90 (96)
22 2d9p_A Polyadenylate-binding p 99.8 1.3E-20 4.3E-25 144.0 11.8 89 15-108 11-100 (103)
23 2dh8_A DAZ-associated protein 99.8 6.3E-21 2.2E-25 146.1 9.9 89 14-106 11-100 (105)
24 2dgp_A Bruno-like 4, RNA bindi 99.8 7.9E-21 2.7E-25 145.7 10.4 89 14-105 8-100 (106)
25 3p5t_L Cleavage and polyadenyl 99.8 2.1E-21 7.2E-26 145.0 6.9 84 20-106 2-88 (90)
26 1u6f_A Tcubp1, RNA-binding pro 99.8 1.5E-20 5.3E-25 151.1 12.2 88 15-105 38-126 (139)
27 3md1_A Nuclear and cytoplasmic 99.8 1.6E-20 5.3E-25 137.5 11.1 81 19-102 1-82 (83)
28 2do4_A Squamous cell carcinoma 99.8 1.6E-20 5.5E-25 142.6 11.6 86 14-103 12-98 (100)
29 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-20 8.7E-25 142.6 12.4 88 15-106 11-102 (105)
30 2cpe_A RNA-binding protein EWS 99.8 9.5E-21 3.2E-25 147.0 9.9 89 14-105 10-107 (113)
31 2dng_A Eukaryotic translation 99.8 2.1E-20 7.3E-25 142.8 11.7 86 15-105 11-97 (103)
32 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.4E-20 4.9E-25 138.9 10.3 82 17-101 4-86 (87)
33 2cq3_A RNA-binding protein 9; 99.8 3.4E-20 1.2E-24 141.5 12.5 90 14-108 10-100 (103)
34 1oo0_B CG8781-PA, drosophila Y 99.8 1.1E-20 3.9E-25 145.9 9.9 87 14-103 21-108 (110)
35 2do0_A HnRNP M, heterogeneous 99.8 7.4E-20 2.5E-24 142.0 14.0 87 15-105 11-98 (114)
36 2kxn_B Transformer-2 protein h 99.8 1.9E-20 6.6E-25 149.5 10.8 86 15-103 42-128 (129)
37 2fy1_A RNA-binding motif prote 99.8 4.4E-20 1.5E-24 144.6 12.6 85 16-104 4-89 (116)
38 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-20 8.3E-25 142.7 10.8 86 15-105 11-98 (104)
39 2dhg_A TRNA selenocysteine ass 99.8 4.6E-20 1.6E-24 140.9 12.2 87 15-105 5-94 (104)
40 2cqc_A Arginine/serine-rich sp 99.8 2.5E-20 8.6E-25 139.9 10.2 83 15-100 11-94 (95)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.8 2.2E-20 7.4E-25 137.3 9.5 81 16-99 4-85 (85)
42 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.4E-20 1.9E-24 140.4 11.8 87 14-105 10-97 (103)
43 2e5h_A Zinc finger CCHC-type a 99.8 2.6E-20 8.9E-25 139.6 9.8 82 15-99 12-94 (94)
44 4f25_A Polyadenylate-binding p 99.8 2.6E-20 8.8E-25 145.6 10.2 84 18-106 4-88 (115)
45 2lkz_A RNA-binding protein 5; 99.8 8.4E-21 2.9E-25 143.9 6.6 83 15-100 5-94 (95)
46 4a8x_A RNA-binding protein wit 99.8 2.7E-20 9.3E-25 137.6 9.2 84 17-103 2-87 (88)
47 2jrs_A RNA-binding protein 39; 99.8 3.4E-20 1.2E-24 143.4 10.0 86 14-102 21-107 (108)
48 2x1f_A MRNA 3'-END-processing 99.8 5.2E-20 1.8E-24 138.8 10.4 83 19-104 2-85 (96)
49 2dis_A Unnamed protein product 99.8 8.4E-20 2.9E-24 140.6 11.6 88 16-106 5-97 (109)
50 2div_A TRNA selenocysteine ass 99.8 4.3E-20 1.5E-24 139.8 9.8 85 15-102 5-95 (99)
51 2cqg_A TDP-43, TAR DNA-binding 99.8 1.1E-19 3.7E-24 138.7 12.0 87 15-106 11-98 (103)
52 2la6_A RNA-binding protein FUS 99.8 6.8E-20 2.3E-24 139.0 10.5 83 14-99 8-99 (99)
53 1x4b_A Heterogeneous nuclear r 99.8 1.4E-20 4.7E-25 146.9 6.6 85 17-105 25-110 (116)
54 1x4c_A Splicing factor, argini 99.8 1.6E-19 5.6E-24 139.3 12.2 80 16-105 12-97 (108)
55 2rs2_A Musashi-1, RNA-binding 99.8 7.4E-20 2.5E-24 141.7 10.2 87 14-104 20-107 (109)
56 3ns6_A Eukaryotic translation 99.8 1.4E-20 4.9E-25 143.5 5.8 82 18-102 5-94 (100)
57 1x4a_A Splicing factor, argini 99.8 1.2E-19 4.2E-24 139.9 11.1 84 15-104 18-102 (109)
58 3ucg_A Polyadenylate-binding p 99.8 9.9E-20 3.4E-24 134.9 10.0 81 18-102 5-86 (89)
59 2ywk_A Putative RNA-binding pr 99.8 8.7E-20 3E-24 137.0 9.7 83 14-100 11-94 (95)
60 2dgv_A HnRNP M, heterogeneous 99.8 1.6E-19 5.4E-24 134.8 11.1 85 15-104 4-89 (92)
61 2dgx_A KIAA0430 protein; RRM d 99.8 1.1E-19 3.8E-24 137.3 10.1 82 16-103 6-92 (96)
62 2m2b_A RNA-binding protein 10; 99.8 4E-20 1.4E-24 147.6 8.0 88 15-106 19-113 (131)
63 2kn4_A Immunoglobulin G-bindin 99.8 7.6E-20 2.6E-24 150.0 9.9 88 16-106 67-155 (158)
64 2cqp_A RNA-binding protein 12; 99.8 4.2E-20 1.4E-24 139.7 7.6 84 15-101 11-95 (98)
65 3ulh_A THO complex subunit 4; 99.8 1.6E-19 5.4E-24 138.6 10.9 81 15-99 25-106 (107)
66 2khc_A Testis-specific RNP-typ 99.8 6E-20 2.1E-24 143.5 8.6 82 15-99 36-118 (118)
67 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.2E-19 3.9E-24 150.6 10.7 90 15-107 68-158 (165)
68 2lea_A Serine/arginine-rich sp 99.8 4.1E-20 1.4E-24 148.7 7.7 89 15-106 43-132 (135)
69 2dgw_A Probable RNA-binding pr 99.8 1.8E-19 6.1E-24 134.5 10.4 82 15-102 6-88 (91)
70 3s7r_A Heterogeneous nuclear r 99.8 1.8E-19 6E-24 133.3 10.1 81 14-98 6-87 (87)
71 3q2s_C Cleavage and polyadenyl 99.8 1.1E-20 3.7E-25 165.2 4.1 82 18-102 67-151 (229)
72 2cpi_A CCR4-NOT transcription 99.8 1.2E-19 4.1E-24 140.8 9.6 86 15-103 11-103 (111)
73 1p1t_A Cleavage stimulation fa 99.8 5.1E-20 1.8E-24 140.5 7.3 85 17-104 6-91 (104)
74 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.7E-20 1.9E-24 139.9 7.6 84 14-102 14-99 (100)
75 2ek1_A RNA-binding protein 12; 99.8 4.3E-20 1.5E-24 138.7 6.5 82 16-100 12-94 (95)
76 2cq4_A RNA binding motif prote 99.8 7.4E-21 2.5E-25 148.0 2.3 84 17-104 23-107 (114)
77 1wez_A HnRNP H', FTP-3, hetero 99.8 1.3E-19 4.6E-24 138.8 9.3 82 15-102 11-93 (102)
78 1wg5_A Heterogeneous nuclear r 99.8 2.3E-19 7.8E-24 137.6 10.4 85 15-104 11-97 (104)
79 1sjq_A Polypyrimidine tract-bi 99.8 1.6E-19 5.3E-24 139.2 9.1 83 15-106 12-97 (105)
80 2kt5_A RNA and export factor-b 99.8 3.7E-19 1.3E-23 140.4 11.5 88 16-107 32-120 (124)
81 2dnq_A RNA-binding protein 4B; 99.8 5.8E-19 2E-23 131.5 11.9 80 15-105 4-84 (90)
82 3n9u_C Cleavage and polyadenyl 99.8 1.6E-19 5.6E-24 148.8 9.8 81 18-101 54-137 (156)
83 2fc8_A NCL protein; structure 99.8 3E-19 1E-23 135.9 10.0 85 14-104 10-95 (102)
84 1s79_A Lupus LA protein; RRM, 99.8 2.3E-19 7.9E-24 137.8 9.3 81 15-100 7-88 (103)
85 2dgu_A Heterogeneous nuclear r 99.8 7.2E-19 2.5E-23 134.3 11.9 82 15-107 7-89 (103)
86 2jwn_A Embryonic polyadenylate 99.8 4.2E-19 1.4E-23 139.9 10.6 82 18-103 35-117 (124)
87 2cpx_A Hypothetical protein FL 99.8 5.3E-20 1.8E-24 143.1 5.1 89 16-107 22-111 (115)
88 2fc9_A NCL protein; structure 99.8 3.9E-19 1.3E-23 135.1 9.8 84 15-105 11-95 (101)
89 1x4e_A RNA binding motif, sing 99.8 6.4E-20 2.2E-24 135.1 5.2 80 17-99 3-83 (85)
90 1x4g_A Nucleolysin TIAR; struc 99.8 5.4E-19 1.9E-23 136.4 10.5 84 14-106 20-104 (109)
91 2mss_A Protein (musashi1); RNA 99.8 1.7E-19 5.7E-24 129.7 7.0 74 21-98 1-75 (75)
92 2jvr_A Nucleolar protein 3; RN 99.8 1.7E-19 5.9E-24 140.5 7.5 85 10-101 19-105 (111)
93 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.8E-19 6.2E-24 129.9 7.1 76 20-99 1-77 (77)
94 2cq1_A PTB-like protein L; RRM 99.8 7.1E-19 2.4E-23 134.7 10.7 83 15-106 11-96 (101)
95 1x5o_A RNA binding motif, sing 99.8 5.5E-19 1.9E-23 137.2 10.2 83 15-101 21-112 (114)
96 2ki2_A SS-DNA binding protein 99.8 7.1E-20 2.4E-24 136.2 4.3 83 20-106 2-85 (90)
97 1x4d_A Matrin 3; structural ge 99.8 2.5E-19 8.6E-24 137.5 7.4 81 16-105 12-96 (102)
98 2ad9_A Polypyrimidine tract-bi 99.8 8.9E-19 3.1E-23 138.0 10.4 83 15-106 27-112 (119)
99 1why_A Hypothetical protein ri 99.8 1.1E-18 3.9E-23 131.7 10.6 80 15-103 13-95 (97)
100 2dgt_A RNA-binding protein 30; 99.8 1.4E-18 4.8E-23 129.9 10.7 81 14-105 5-86 (92)
101 2err_A Ataxin-2-binding protei 99.8 5.4E-19 1.8E-23 136.7 8.4 84 14-102 24-108 (109)
102 2hvz_A Splicing factor, argini 99.8 1.3E-18 4.4E-23 132.2 10.1 77 20-104 1-78 (101)
103 2cpy_A RNA-binding protein 12; 99.8 2.1E-19 7.1E-24 140.1 5.8 83 15-102 11-95 (114)
104 2dnp_A RNA-binding protein 14; 99.8 1.6E-18 5.3E-23 129.1 10.3 80 15-105 5-85 (90)
105 2e5g_A U6 snRNA-specific termi 99.8 2E-18 6.8E-23 129.7 10.9 83 16-107 5-88 (94)
106 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1E-18 3.5E-23 140.0 9.8 80 16-98 60-140 (140)
107 3pgw_S U1-70K; protein-RNA com 99.8 2.2E-18 7.4E-23 164.0 13.4 85 18-105 101-186 (437)
108 1wex_A Hypothetical protein (r 99.8 1.7E-18 5.8E-23 133.3 10.4 82 15-105 11-95 (104)
109 2db1_A Heterogeneous nuclear r 99.8 3.3E-19 1.1E-23 140.0 6.4 83 15-102 13-99 (118)
110 3r27_A HnRNP L, heterogeneous 99.8 1.4E-18 4.8E-23 132.7 9.5 79 15-102 17-98 (100)
111 3beg_B Splicing factor, argini 99.8 1.3E-18 4.5E-23 135.9 9.4 76 17-102 14-95 (115)
112 2hgl_A HNRPF protein, heteroge 99.8 3.8E-19 1.3E-23 143.4 6.5 83 15-102 40-126 (136)
113 1fj7_A Nucleolin RBD1, protein 99.8 9.6E-20 3.3E-24 138.5 2.7 84 16-104 14-98 (101)
114 2wbr_A GW182, gawky, LD47780P; 99.8 1.6E-18 5.6E-23 128.7 9.3 73 18-99 6-79 (89)
115 2la4_A Nuclear and cytoplasmic 99.8 1.3E-18 4.6E-23 132.2 9.0 81 12-101 20-101 (101)
116 2cpj_A Non-POU domain-containi 99.8 1.8E-18 6.3E-23 131.0 9.7 82 15-105 11-93 (99)
117 2e5j_A Methenyltetrahydrofolat 99.8 1.8E-18 6.1E-23 130.7 9.4 81 15-103 15-96 (97)
118 1wel_A RNA-binding protein 12; 99.8 2.2E-19 7.4E-24 141.9 4.5 83 16-102 22-105 (124)
119 1x4f_A Matrin 3; structural ge 99.8 1.2E-18 4.2E-23 135.8 8.6 83 15-106 21-107 (112)
120 2dnn_A RNA-binding protein 12; 99.8 4.7E-19 1.6E-23 137.6 6.2 78 18-101 15-93 (109)
121 2lcw_A RNA-binding protein FUS 99.6 4.2E-20 1.5E-24 144.2 0.0 86 15-103 3-97 (116)
122 2nlw_A Eukaryotic translation 99.8 1.5E-18 5E-23 133.3 8.3 83 15-102 11-101 (105)
123 2xs2_A Deleted in azoospermia- 99.8 6.1E-19 2.1E-23 134.3 5.9 85 15-105 5-90 (102)
124 2qfj_A FBP-interacting repress 99.8 4.9E-18 1.7E-22 144.8 11.9 88 17-107 123-211 (216)
125 2a3j_A U1 small nuclear ribonu 99.8 3.7E-18 1.3E-22 136.1 10.2 86 15-103 25-112 (127)
126 2lmi_A GRSF-1, G-rich sequence 99.8 5.6E-19 1.9E-23 136.1 5.2 83 15-102 7-93 (107)
127 2cqh_A IGF-II mRNA-binding pro 99.8 2E-18 6.7E-23 129.2 8.1 80 16-105 5-87 (93)
128 2hgn_A Heterogeneous nuclear r 99.8 5E-19 1.7E-23 143.2 5.0 82 16-103 43-125 (139)
129 1wf1_A RNA-binding protein RAL 99.7 1.9E-18 6.5E-23 133.5 8.0 78 16-104 24-103 (110)
130 2ytc_A PRE-mRNA-splicing facto 99.7 5.9E-18 2E-22 124.3 9.7 77 14-99 7-85 (85)
131 1l3k_A Heterogeneous nuclear r 99.7 3.9E-18 1.3E-22 143.3 9.8 88 17-108 102-190 (196)
132 1iqt_A AUF1, heterogeneous nuc 99.7 7.6E-19 2.6E-23 126.1 4.6 74 21-98 1-75 (75)
133 2cpd_A Apobec-1 stimulating pr 99.7 1.1E-17 3.7E-22 126.7 11.2 79 15-104 11-92 (99)
134 2f3j_A RNA and export factor b 99.7 3.7E-18 1.3E-22 143.4 9.4 84 17-104 86-170 (177)
135 2kvi_A Nuclear polyadenylated 99.7 4.1E-18 1.4E-22 128.5 8.7 80 15-105 6-87 (96)
136 2jvo_A Nucleolar protein 3; nu 99.7 5.2E-18 1.8E-22 131.2 9.1 79 15-104 27-106 (108)
137 2e44_A Insulin-like growth fac 99.7 5.6E-18 1.9E-22 127.4 8.5 81 15-102 11-93 (96)
138 2hgm_A HNRPF protein, heteroge 99.7 1.6E-18 5.5E-23 137.9 5.6 81 16-102 39-122 (126)
139 2dha_A FLJ20171 protein; RRM d 99.7 1.7E-18 5.6E-23 137.3 5.5 82 16-102 20-106 (123)
140 2krb_A Eukaryotic translation 99.7 3.2E-18 1.1E-22 125.0 6.5 72 20-96 2-81 (81)
141 1x5p_A Negative elongation fac 99.7 2.5E-17 8.7E-22 124.3 11.5 81 15-106 11-92 (97)
142 1nu4_A U1A RNA binding domain; 99.7 3.8E-18 1.3E-22 128.4 6.7 83 15-103 4-91 (97)
143 3lqv_A PRE-mRNA branch site pr 99.7 1.2E-17 4E-22 129.8 9.7 82 16-103 5-87 (115)
144 1fjc_A Nucleolin RBD2, protein 99.7 3.5E-18 1.2E-22 128.5 6.4 82 14-103 11-93 (96)
145 1whx_A Hypothetical protein ri 99.7 1E-17 3.4E-22 130.1 9.0 79 16-103 7-86 (111)
146 2i2y_A Fusion protein consists 99.7 1.4E-17 4.8E-22 135.5 10.2 80 15-102 69-149 (150)
147 2xnq_A Nuclear polyadenylated 99.7 2E-17 7E-22 125.2 10.4 77 15-102 18-96 (97)
148 4f02_A Polyadenylate-binding p 99.7 1.8E-17 6.1E-22 142.4 10.9 83 17-102 13-96 (213)
149 2cq2_A Hypothetical protein LO 99.7 1.5E-17 5E-22 130.0 9.0 83 14-105 20-110 (114)
150 1fxl_A Paraneoplastic encephal 99.7 2.8E-17 9.7E-22 134.0 11.0 82 19-103 2-84 (167)
151 3md3_A Nuclear and cytoplasmic 99.7 3E-17 1E-21 133.7 11.2 82 16-100 84-166 (166)
152 1b7f_A Protein (SXL-lethal pro 99.7 2.4E-17 8.4E-22 134.9 10.4 83 18-103 2-85 (168)
153 1sjr_A Polypyrimidine tract-bi 99.7 3.8E-17 1.3E-21 135.3 11.5 79 18-103 45-126 (164)
154 3egn_A RNA-binding protein 40; 99.7 2.5E-18 8.7E-23 138.9 4.3 88 16-106 42-135 (143)
155 1wg1_A KIAA1579 protein, homol 99.7 2.1E-17 7.3E-22 122.6 8.5 76 18-103 4-80 (88)
156 2e5i_A Heterogeneous nuclear r 99.7 5.2E-17 1.8E-21 128.8 10.9 75 20-103 26-104 (124)
157 2yh0_A Splicing factor U2AF 65 99.7 4.1E-17 1.4E-21 137.2 10.6 84 17-103 112-196 (198)
158 1l3k_A Heterogeneous nuclear r 99.7 4.7E-17 1.6E-21 136.6 10.4 85 15-103 9-94 (196)
159 3zzy_A Polypyrimidine tract-bi 99.7 1E-16 3.4E-21 128.0 11.1 80 17-104 26-109 (130)
160 3d2w_A TAR DNA-binding protein 99.7 2.4E-17 8.3E-22 123.0 7.1 80 14-103 6-86 (89)
161 2cjk_A Nuclear polyadenylated 99.7 3.2E-17 1.1E-21 134.3 7.7 80 18-101 86-166 (167)
162 2g4b_A Splicing factor U2AF 65 99.7 7.3E-17 2.5E-21 132.7 9.9 80 17-99 92-172 (172)
163 1wf0_A TDP-43, TAR DNA-binding 99.7 1.8E-17 6.2E-22 122.8 5.6 79 17-105 3-82 (88)
164 2dnl_A Cytoplasmic polyadenyla 99.7 1E-16 3.6E-21 124.7 9.5 78 16-99 5-86 (114)
165 4f02_A Polyadenylate-binding p 99.7 7E-17 2.4E-21 138.7 9.2 81 18-103 102-183 (213)
166 2j8a_A Histone-lysine N-methyl 99.7 5.8E-17 2E-21 128.3 7.1 77 20-99 3-94 (136)
167 2diu_A KIAA0430 protein; struc 99.7 3E-16 1E-20 117.7 10.4 81 17-107 6-90 (96)
168 2pe8_A Splicing factor 45; RRM 99.7 2.2E-16 7.6E-21 121.6 9.9 85 17-101 6-94 (105)
169 1b7f_A Protein (SXL-lethal pro 99.7 3E-16 1E-20 128.3 11.3 80 16-98 86-168 (168)
170 3md3_A Nuclear and cytoplasmic 99.7 2E-16 6.9E-21 128.8 10.1 80 20-103 1-81 (166)
171 3nmr_A Cugbp ELAV-like family 99.7 1.9E-16 6.5E-21 130.2 9.9 79 17-99 93-175 (175)
172 2qfj_A FBP-interacting repress 99.7 1.8E-16 6E-21 135.1 10.0 83 17-102 26-109 (216)
173 2bz2_A Negative elongation fac 99.7 2.5E-16 8.5E-21 124.2 9.0 79 16-105 36-115 (121)
174 3ue2_A Poly(U)-binding-splicin 99.7 2.3E-16 8E-21 124.0 8.7 83 18-100 19-108 (118)
175 2hzc_A Splicing factor U2AF 65 99.7 2.4E-16 8.1E-21 116.0 7.9 71 17-97 4-86 (87)
176 1fxl_A Paraneoplastic encephal 99.7 5.1E-16 1.7E-20 126.5 10.6 79 17-98 86-167 (167)
177 3nmr_A Cugbp ELAV-like family 99.6 5.1E-16 1.7E-20 127.6 10.3 83 18-103 2-90 (175)
178 3tyt_A Heterogeneous nuclear r 99.6 5.5E-16 1.9E-20 133.0 10.5 77 18-102 3-81 (205)
179 2dit_A HIV TAT specific factor 99.6 9.1E-16 3.1E-20 119.0 10.5 87 15-105 11-106 (112)
180 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-15 4.3E-20 135.6 10.8 84 14-103 4-92 (282)
181 3v4m_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 117.7 8.6 85 17-101 3-97 (105)
182 2cjk_A Nuclear polyadenylated 99.6 6.2E-16 2.1E-20 126.5 7.4 79 18-101 2-81 (167)
183 2adc_A Polypyrimidine tract-bi 99.6 2.4E-15 8.2E-20 130.5 10.5 81 15-103 30-112 (229)
184 3u1l_A PRE-mRNA-splicing facto 99.6 1.5E-15 5E-20 133.3 8.8 81 15-104 130-232 (240)
185 1fje_B Nucleolin RBD12, protei 99.6 1.5E-15 5.2E-20 125.4 8.1 77 17-101 97-174 (175)
186 2voo_A Lupus LA protein; RNA-b 99.6 3.1E-15 1.1E-19 127.2 10.2 77 19-100 109-186 (193)
187 2ghp_A U4/U6 snRNA-associated 99.6 1.8E-15 6.3E-20 135.2 8.7 81 17-101 208-291 (292)
188 3smz_A Protein raver-1, ribonu 99.6 6.5E-15 2.2E-19 131.1 11.6 86 16-104 92-178 (284)
189 3smz_A Protein raver-1, ribonu 99.6 4.1E-15 1.4E-19 132.4 10.3 86 15-104 180-267 (284)
190 1qm9_A Polypyrimidine tract-bi 99.6 3.7E-15 1.3E-19 125.7 8.1 78 18-103 2-81 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.6 2.8E-14 9.7E-19 108.8 12.2 77 19-105 10-94 (100)
192 3pgw_A U1-A; protein-RNA compl 99.6 8.5E-15 2.9E-19 130.2 10.5 77 15-99 203-281 (282)
193 1jmt_A Splicing factor U2AF 35 99.6 1.5E-15 5E-20 116.7 3.9 75 23-98 20-103 (104)
194 1fje_B Nucleolin RBD12, protei 99.6 9.6E-16 3.3E-20 126.6 2.7 84 15-103 9-93 (175)
195 2adc_A Polypyrimidine tract-bi 99.5 2.1E-14 7.2E-19 124.5 10.6 77 17-101 149-228 (229)
196 1qm9_A Polypyrimidine tract-bi 99.5 1E-14 3.5E-19 123.0 7.5 77 17-101 118-197 (198)
197 3tyt_A Heterogeneous nuclear r 99.5 1.3E-14 4.6E-19 124.3 7.8 77 17-98 121-204 (205)
198 3sde_A Paraspeckle component 1 99.5 2.7E-14 9.2E-19 126.3 8.9 84 17-104 94-182 (261)
199 2ghp_A U4/U6 snRNA-associated 99.5 3E-14 1E-18 127.3 8.2 84 17-104 115-200 (292)
200 3sde_A Paraspeckle component 1 99.5 2.7E-14 9.1E-19 126.3 7.5 77 16-101 19-96 (261)
201 2g4b_A Splicing factor U2AF 65 99.5 6E-14 2.1E-18 115.1 9.1 76 18-103 3-90 (172)
202 2yh0_A Splicing factor U2AF 65 99.5 1.2E-13 4.1E-18 115.8 9.2 76 18-103 3-90 (198)
203 3s6e_A RNA-binding protein 39; 99.4 2.4E-13 8.1E-18 106.1 8.0 80 17-100 5-92 (114)
204 3tht_A Alkylated DNA repair pr 99.4 4.8E-13 1.6E-17 123.1 8.3 76 15-99 14-97 (345)
205 2dnr_A Synaptojanin-1; RRM dom 99.3 3.5E-12 1.2E-16 94.7 7.7 76 18-102 6-87 (91)
206 3dxb_A Thioredoxin N-terminall 99.2 3.5E-11 1.2E-15 103.6 11.0 84 17-100 122-212 (222)
207 1owx_A Lupus LA protein, SS-B, 99.2 3.5E-11 1.2E-15 94.5 8.5 76 15-99 14-94 (121)
208 1ufw_A Synaptojanin 2; RNP dom 99.2 2E-11 6.8E-16 91.1 5.6 76 15-99 11-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.8 2.1E-08 7.1E-13 76.5 8.4 74 16-98 18-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.5 1.5E-06 5.2E-11 65.5 10.6 75 17-103 6-86 (104)
211 1wey_A Calcipressin 1; structu 98.3 2.8E-06 9.7E-11 64.3 8.5 78 19-102 5-85 (104)
212 1wwh_A Nucleoporin 35, nucleop 98.2 3.2E-06 1.1E-10 65.6 6.9 79 9-98 14-94 (119)
213 1uw4_A UPF3X; nonsense mediate 97.9 8E-05 2.7E-09 55.2 8.6 79 20-101 2-88 (91)
214 1whv_A Poly(A)-specific ribonu 97.8 4E-05 1.4E-09 57.1 6.2 56 17-84 14-70 (100)
215 3ctr_A Poly(A)-specific ribonu 97.6 7.1E-05 2.4E-09 56.0 4.8 53 20-84 7-60 (101)
216 2l08_A Regulator of nonsense t 97.3 0.00032 1.1E-08 52.4 5.6 78 19-99 9-94 (97)
217 3p3d_A Nucleoporin 53; structu 97.3 0.00015 5.2E-09 57.0 3.4 75 20-99 8-97 (132)
218 2kn4_A Immunoglobulin G-bindin 97.0 0.00055 1.9E-08 54.8 3.9 35 50-86 2-36 (158)
219 2i2y_A Fusion protein consists 96.5 0.0014 4.8E-08 52.1 3.1 42 59-101 9-51 (150)
220 3pq1_A Poly(A) RNA polymerase; 96.3 0.0012 4.1E-08 62.6 2.1 55 19-82 53-108 (464)
221 3d45_A Poly(A)-specific ribonu 93.8 0.12 4E-06 49.6 7.2 54 19-84 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 88.6 0.77 2.6E-05 31.8 5.1 55 36-99 16-75 (76)
223 4eyt_A Telomerase associated p 86.5 3.4 0.00012 30.1 7.5 68 18-96 11-86 (129)
224 3fry_A Probable copper-exporti 79.4 3.1 0.00011 27.7 4.8 56 18-83 5-61 (73)
225 2cu1_A Mitogen-activated prote 79.0 3.4 0.00012 30.5 5.0 65 25-101 23-88 (103)
226 4e8u_A Putative uncharacterize 71.3 14 0.00049 29.9 7.4 56 20-81 14-81 (172)
227 3bde_A MLL5499 protein; stress 69.4 16 0.00055 27.5 7.0 60 19-78 21-86 (120)
228 2kpo_A Rossmann 2X2 fold prote 69.4 1.8 6.2E-05 30.7 1.4 50 30-95 33-83 (110)
229 3bb5_A Stress responsive alpha 68.0 18 0.00061 27.2 7.0 62 19-80 21-91 (121)
230 3bgu_A Ferredoxin-like protein 65.7 11 0.00038 28.2 5.4 60 20-80 23-90 (116)
231 1kvi_A Copper-transporting ATP 64.2 21 0.00072 23.3 6.2 57 18-83 8-69 (79)
232 3dxs_X Copper-transporting ATP 63.4 15 0.00053 23.9 5.4 55 20-83 4-63 (74)
233 3lpe_A Putative transcription 61.7 20 0.0007 25.6 6.0 33 48-85 40-72 (92)
234 3ced_A Methionine import ATP-b 60.2 8.5 0.00029 28.0 3.7 63 18-85 19-87 (98)
235 2lfv_A Protein DAMX; cell divi 64.5 1.8 6.3E-05 32.3 0.0 63 15-85 21-86 (106)
236 2cfx_A HTH-type transcriptiona 59.8 44 0.0015 25.4 8.1 47 35-85 78-124 (144)
237 3bn7_A Ferredoxin-like protein 59.3 19 0.00066 27.0 5.7 59 20-78 22-91 (120)
238 1mli_A Muconolactone isomerase 57.8 50 0.0017 24.0 7.4 68 24-97 9-83 (96)
239 1q4r_A Protein AT3G17210; cent 57.2 27 0.00094 25.6 6.2 61 20-80 12-81 (112)
240 2l3m_A Copper-ION-binding prot 57.0 23 0.00078 22.3 5.2 55 20-83 7-66 (71)
241 2qrr_A Methionine import ATP-b 56.6 26 0.00088 25.3 5.9 63 20-85 24-89 (101)
242 2ofg_X Zinc-transporting ATPas 56.3 31 0.0011 24.9 6.4 56 19-83 9-69 (111)
243 2ko1_A CTR148A, GTP pyrophosph 55.1 45 0.0016 22.5 7.0 48 36-85 20-68 (88)
244 2qyc_A Ferredoxin-like protein 54.7 37 0.0013 24.3 6.5 55 23-78 10-71 (103)
245 1q8l_A Copper-transporting ATP 54.2 45 0.0015 22.1 7.9 56 19-83 10-70 (84)
246 3pgw_S U1-70K; protein-RNA com 53.5 0.81 2.8E-05 42.8 -3.7 14 38-51 9-22 (437)
247 2kkh_A Putative heavy metal tr 53.0 52 0.0018 22.5 7.4 57 18-83 16-77 (95)
248 1vd2_A Protein kinase C, IOTA 52.0 31 0.0011 24.7 5.4 53 23-83 19-74 (89)
249 1opz_A Potential copper-transp 51.2 43 0.0015 21.1 6.9 56 19-83 7-67 (76)
250 1yg0_A COP associated protein; 50.7 40 0.0014 20.6 5.9 54 21-83 4-61 (66)
251 2cyy_A Putative HTH-type trans 50.1 70 0.0024 24.3 7.9 46 35-84 80-125 (151)
252 2jrh_A Mitogen-activated prote 49.7 34 0.0012 24.6 5.2 64 26-101 20-84 (94)
253 2v94_A RPS24, 30S ribosomal pr 49.4 16 0.00055 27.2 3.6 48 28-79 37-89 (107)
254 4hhu_A OR280; engineered prote 48.7 22 0.00075 27.0 4.3 73 20-97 43-128 (170)
255 1tr0_A Stable protein 1; plant 48.4 46 0.0016 24.1 6.2 57 23-79 14-80 (108)
256 2npt_B Mitogen-activated prote 48.3 39 0.0013 24.6 5.4 50 25-85 35-85 (100)
257 2xmw_A PACS-N, cation-transpor 47.6 48 0.0016 20.5 5.9 55 20-83 5-63 (71)
258 4bby_A Alkyldihydroxyacetoneph 46.8 24 0.00081 34.5 5.5 56 24-83 349-408 (658)
259 1mwy_A ZNTA; open-faced beta-s 46.6 53 0.0018 20.8 6.7 55 20-83 5-62 (73)
260 2kt2_A Mercuric reductase; nme 46.4 51 0.0017 20.5 6.4 53 21-82 3-59 (69)
261 3d53_A Inorganic pyrophosphata 44.8 36 0.0012 27.5 5.4 40 33-83 130-169 (173)
262 3i4p_A Transcriptional regulat 43.9 76 0.0026 24.6 7.2 44 36-83 80-123 (162)
263 1yjr_A Copper-transporting ATP 43.5 59 0.002 20.4 6.8 55 19-82 5-64 (75)
264 2g9o_A Copper-transporting ATP 43.1 28 0.00095 23.9 4.1 55 20-83 5-64 (90)
265 2c60_A Human mitogen-activated 42.9 32 0.0011 25.4 4.2 50 25-85 46-96 (111)
266 4a4j_A Pacszia, cation-transpo 42.1 28 0.00096 22.1 3.7 54 20-82 4-61 (69)
267 3tbg_A Cytochrome P450 2D6; mo 42.1 14 0.00046 33.5 2.8 57 23-89 21-77 (479)
268 1cpz_A Protein (COPZ); copper 42.0 58 0.002 19.9 7.2 53 21-82 3-60 (68)
269 2e1c_A Putative HTH-type trans 41.8 76 0.0026 25.0 7.0 45 35-83 100-144 (171)
270 2i9x_A Putative septation prot 41.3 33 0.0011 24.5 4.1 26 47-72 5-30 (87)
271 1osd_A MERP, hypothetical prot 41.3 63 0.0021 20.1 6.8 55 20-83 5-64 (72)
272 2qsw_A Methionine import ATP-b 41.1 20 0.00068 25.8 3.0 60 20-84 24-88 (100)
273 2w7a_A LINE-1 ORF1P; RNA-bindi 40.6 51 0.0018 24.1 5.2 32 65-96 64-98 (100)
274 3cjk_B Copper-transporting ATP 40.4 68 0.0023 20.2 6.0 54 21-83 5-63 (75)
275 2e7g_A Putative ribosome-bindi 40.1 38 0.0013 25.8 4.6 35 45-83 43-78 (129)
276 1qez_A Ppase, S-ppase, protein 39.7 48 0.0016 26.8 5.4 40 33-83 126-165 (173)
277 2cg4_A Regulatory protein ASNC 39.7 1.2E+02 0.004 23.0 7.6 45 36-84 83-128 (152)
278 2pn6_A ST1022, 150AA long hypo 38.5 1.2E+02 0.0042 22.7 7.7 46 35-84 78-124 (150)
279 1y3j_A Copper-transporting ATP 37.8 31 0.0011 22.3 3.5 55 20-83 5-64 (77)
280 1mwq_A Hypothetical protein HI 37.2 1.1E+02 0.0037 21.6 7.2 36 62-98 60-97 (101)
281 3fut_A Dimethyladenosine trans 37.2 17 0.00057 31.5 2.4 32 20-55 111-143 (271)
282 2kkc_A Sequestosome-1; P62, PB 36.9 1.2E+02 0.0042 22.1 7.3 18 67-84 74-91 (102)
283 1i1g_A Transcriptional regulat 36.7 78 0.0027 23.5 6.1 47 34-84 76-123 (141)
284 2crl_A Copper chaperone for su 36.4 1.1E+02 0.0036 21.4 6.4 42 36-83 34-76 (98)
285 2ia9_A Putative septation prot 36.2 43 0.0015 24.6 4.1 26 47-72 5-30 (100)
286 2ldi_A Zinc-transporting ATPas 35.9 74 0.0025 19.4 5.4 54 20-82 5-63 (71)
287 3e6i_A CYPIIE1, P450-J, cytoch 35.5 45 0.0015 30.0 5.2 51 23-82 21-71 (476)
288 3swz_A Steroid 17-alpha-hydrox 35.3 32 0.0011 31.3 4.2 60 22-91 18-78 (494)
289 2bkf_A Zinc-finger protein NBR 35.1 39 0.0013 24.2 3.6 55 19-82 17-72 (87)
290 2i9z_A Putative septation prot 34.9 46 0.0016 24.6 4.2 26 47-72 5-30 (105)
291 2llz_A Uncharacterized protein 33.7 67 0.0023 23.4 4.7 75 15-96 7-87 (100)
292 3dhx_A Methionine import ATP-b 33.7 51 0.0017 24.0 4.3 59 23-86 26-88 (106)
293 1wj6_A KIAA0049 protein, RSGI 33.5 21 0.00073 26.3 2.1 62 26-99 32-94 (101)
294 2djw_A Probable transcriptiona 33.4 84 0.0029 21.7 5.4 42 36-81 16-57 (92)
295 2p5v_A Transcriptional regulat 33.3 1.5E+02 0.005 22.7 7.3 46 35-84 85-131 (162)
296 2zbc_A 83AA long hypothetical 33.3 1.1E+02 0.0036 20.4 6.7 44 36-83 16-60 (83)
297 2cvi_A 75AA long hypothetical 33.1 1.1E+02 0.0038 20.6 6.7 42 36-81 16-57 (83)
298 1ywx_A 30S ribosomal protein S 32.8 1.3E+02 0.0046 21.9 6.4 52 23-78 23-79 (102)
299 3iwl_A Copper transport protei 32.8 66 0.0023 20.5 4.5 53 20-83 4-58 (68)
300 2prd_A Pyrophosphate phosphohy 32.5 49 0.0017 26.7 4.3 42 33-83 127-168 (174)
301 3pyf_A 4-diphosphocytidyl-2-C- 32.4 74 0.0025 27.6 5.9 55 35-96 237-291 (306)
302 1xn9_A 30S ribosomal protein S 32.3 1.4E+02 0.0048 21.8 6.4 54 23-80 23-81 (101)
303 1aw0_A Menkes copper-transport 32.0 57 0.0019 20.3 4.0 54 21-83 6-64 (72)
304 1wvf_A 4-cresol dehydrogenase 31.9 25 0.00084 33.3 2.8 43 37-80 217-261 (520)
305 3pm9_A Putative oxidoreductase 31.5 43 0.0015 31.3 4.4 54 26-83 194-251 (476)
306 2qif_A Copper chaperone COPZ; 31.0 88 0.003 18.7 6.1 54 21-83 5-63 (69)
307 2k2p_A Uncharacterized protein 30.9 30 0.001 23.7 2.5 57 18-83 22-80 (85)
308 1fvq_A Copper-transporting ATP 30.8 74 0.0025 19.7 4.4 54 21-83 5-62 (72)
309 1rjj_A Expressed protein; beta 30.8 97 0.0033 22.4 5.5 74 23-101 11-102 (111)
310 4aj5_1 SKA3, spindle and kinet 30.4 19 0.00064 26.5 1.3 14 33-46 88-101 (101)
311 1ytr_A Bacteriocin plantaricin 30.2 29 0.00099 18.4 1.7 13 34-46 13-25 (26)
312 1wf8_A Neurabin-I; PDZ domain, 30.1 62 0.0021 23.0 4.3 39 19-60 63-103 (107)
313 1o57_A PUR operon repressor; p 30.0 92 0.0031 27.0 6.1 47 32-83 41-87 (291)
314 2okq_A Hypothetical protein YB 29.9 1.1E+02 0.0038 23.8 5.7 46 38-83 50-110 (141)
315 2ns6_A Mobilization protein A; 29.4 1.2E+02 0.0041 24.5 6.3 53 18-73 70-127 (185)
316 1cqm_A Ribosomal protein S6; a 29.1 84 0.0029 22.6 4.8 32 62-95 56-88 (101)
317 3izc_n 60S ribosomal protein R 29.0 54 0.0018 22.9 3.4 51 34-84 4-70 (78)
318 1p6t_A Potential copper-transp 28.8 1.1E+02 0.0038 22.5 5.8 52 23-83 80-135 (151)
319 3fmb_A Dimeric protein of unkn 28.7 1.8E+02 0.006 21.4 7.4 58 23-80 26-92 (118)
320 2cpq_A FragIle X mental retard 28.6 1.6E+02 0.0055 21.0 6.2 44 36-86 35-78 (91)
321 2ktr_A Sequestosome-1; autopha 28.4 1.9E+02 0.0064 21.7 7.3 18 67-84 89-106 (117)
322 1pqs_A Cell division control p 28.4 26 0.00089 24.4 1.7 28 66-95 47-74 (77)
323 2yko_A LINE-1 ORF1P; RNA-bindi 28.4 1.1E+02 0.0036 26.0 5.8 82 15-99 48-150 (233)
324 2f06_A Conserved hypothetical 28.2 1.9E+02 0.0063 21.6 7.3 25 63-88 111-135 (144)
325 2kyz_A Heavy metal binding pro 28.1 35 0.0012 21.4 2.3 50 23-82 7-56 (67)
326 1sxv_A Inorganic pyrophosphata 28.0 98 0.0034 24.9 5.4 39 34-83 125-163 (172)
327 2g1d_A 30S ribosomal protein S 27.2 15 0.00052 26.9 0.4 47 28-78 29-80 (98)
328 3h7h_B Transcription elongatio 27.0 63 0.0021 23.8 3.8 25 62-86 50-74 (106)
329 3iz6_U 40S ribosomal protein S 26.6 15 0.00052 28.6 0.3 45 29-77 39-89 (138)
330 2ew9_A Copper-transporting ATP 26.5 83 0.0028 23.1 4.6 54 21-83 83-141 (149)
331 3pm0_A Cypib1, cytochrome P450 26.2 57 0.002 29.5 4.2 50 23-82 20-69 (507)
332 2dbb_A Putative HTH-type trans 26.1 1.6E+02 0.0055 22.1 6.3 44 36-83 83-128 (151)
333 2xzm_P RPS24E; ribosome, trans 25.6 53 0.0018 25.9 3.3 48 28-79 31-83 (149)
334 2l69_A Rossmann 2X3 fold prote 25.3 88 0.003 22.7 4.1 31 65-97 53-83 (134)
335 1i4w_A Mitochondrial replicati 25.1 52 0.0018 29.6 3.6 18 23-43 147-164 (353)
336 3e4c_A Caspase-1; zymogen, inf 25.1 87 0.003 27.4 5.0 47 21-83 63-116 (302)
337 3u5c_Y RP50, 40S ribosomal pro 24.9 2.4E+02 0.0081 21.7 7.2 47 28-78 33-84 (135)
338 3gvf_A Inorganic pyrophosphata 24.7 1.2E+02 0.004 25.0 5.4 38 35-83 153-190 (196)
339 1cc8_A Protein (metallochapero 24.6 1.4E+02 0.0048 18.9 5.0 53 21-83 8-63 (73)
340 2uuu_A Alkyldihydroxyacetoneph 24.4 58 0.002 31.3 4.0 54 26-83 281-338 (584)
341 3uzu_A Ribosomal RNA small sub 24.3 17 0.00056 31.6 0.1 32 22-56 118-149 (279)
342 2j5a_A 30S ribosomal protein S 24.1 1.3E+02 0.0045 22.0 5.1 21 60-80 60-82 (110)
343 3ts2_A Protein LIN-28 homolog 23.5 2.4 8.2E-05 33.6 -5.0 28 36-71 2-29 (148)
344 2h54_A Caspase-1; allosteric s 22.9 1.2E+02 0.0042 24.2 5.2 47 21-83 46-99 (178)
345 3n9y_A Cholesterol SIDE-chain 22.7 70 0.0024 28.8 4.1 38 36-82 36-73 (487)
346 2db5_A INAD-like protein; PDZ 22.6 1.8E+02 0.0061 21.2 5.8 36 19-57 77-115 (128)
347 3tr4_A Inorganic pyrophosphata 22.2 1.4E+02 0.0049 24.0 5.4 39 34-83 132-170 (178)
348 2lv7_A Calcium-binding protein 22.1 41 0.0014 24.0 1.9 23 23-45 23-45 (100)
349 2au7_A Inorganic pyrophosphata 21.9 1.1E+02 0.0037 24.7 4.5 39 34-83 130-168 (175)
350 2w25_A Probable transcriptiona 21.8 1.4E+02 0.005 22.4 5.2 44 36-83 82-125 (150)
351 3lmz_A Putative sugar isomeras 21.6 2.1E+02 0.0071 23.3 6.6 23 25-47 53-75 (257)
352 2lsl_A Telomerase associated p 27.1 20 0.00067 26.3 0.0 21 63-83 77-97 (137)
353 2e5p_A Protein PHF1, PHD finge 21.3 32 0.0011 23.3 1.0 11 63-73 37-47 (68)
354 2f40_A Hypothetical protein PF 21.2 21 0.00071 25.6 0.1 34 65-98 47-81 (96)
355 2vsp_A PDZ domain-containing p 20.9 1.2E+02 0.0041 20.6 4.2 35 19-56 49-85 (91)
356 2lju_A Putative oxidoreductase 20.7 1.9E+02 0.0065 21.4 5.3 25 67-97 63-87 (108)
357 3ld6_A Lanosterol 14-alpha dem 20.6 84 0.0029 28.2 4.1 38 36-82 35-72 (461)
358 3lo3_A Uncharacterized conserv 20.6 2.3E+02 0.0078 19.9 5.8 43 37-81 25-71 (94)
359 1wha_A KIAA0147 protein, scrib 20.5 1.7E+02 0.0057 20.5 5.1 37 19-58 61-99 (105)
360 1x8d_A Hypothetical protein YI 20.3 2.1E+02 0.0071 20.7 5.5 34 36-72 27-60 (104)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.88 E-value=2.4e-22 Score=164.98 Aligned_cols=84 Identities=15% Similarity=0.213 Sum_probs=79.8
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+.++| |.|||++||| ++|+++|++|++|++|+|++++.|+++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 37 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTE---EQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTCCEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 456888 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 023632 96 KKAEPKKP 103 (279)
Q Consensus 96 ~~a~~~~~ 103 (279)
++|+++..
T Consensus 114 ~~a~~~~~ 121 (156)
T 1h2v_Z 114 DWDAGFKE 121 (156)
T ss_dssp EEESCCCT
T ss_pred EECCCCCC
Confidence 99987554
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=4.5e-22 Score=151.84 Aligned_cols=81 Identities=23% Similarity=0.478 Sum_probs=77.5
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |+|||+++|| ++|+++|++||+|++|+|++|+.|+++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 17 ~~gt~lfV~nLp~~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V 93 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQ---DELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKV 93 (99)
T ss_dssp CCCSEEEEESCCTTCCH---HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345778 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccC
Q 023632 96 KKAEP 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
++|+|
T Consensus 94 ~~AkP 98 (99)
T 4fxv_A 94 SYARP 98 (99)
T ss_dssp EECCB
T ss_pred EEeeC
Confidence 99976
No 3
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=3.5e-21 Score=146.01 Aligned_cols=90 Identities=34% Similarity=0.593 Sum_probs=82.8
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
....+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ ||+++|++++
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGE---TELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCH---HHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 345677889 9999999999 9999999999999999999999999999999999999999999999 8999999999
Q ss_pred eEEeeccCCCCCCCC
Q 023632 93 VEVKKAEPKKPNLPQ 107 (279)
Q Consensus 93 i~V~~a~~~~~~~~~ 107 (279)
|+|++++++....+.
T Consensus 81 l~V~~a~~~~~~~~~ 95 (99)
T 2dgs_A 81 VEVKRAEPRDSKSSG 95 (99)
T ss_dssp CEEEECCCCCCCCCC
T ss_pred EEEEECCCCcccCCC
Confidence 999999987665543
No 4
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.86 E-value=1.7e-21 Score=151.84 Aligned_cols=91 Identities=18% Similarity=0.351 Sum_probs=83.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGD---QDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCSTTCCEEEESCCSSCCH---HHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 44566888 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCC
Q 023632 94 EVKKAEPKKPNLPQP 108 (279)
Q Consensus 94 ~V~~a~~~~~~~~~~ 108 (279)
+|++++++..+.+.+
T Consensus 98 ~V~~a~~~~~~~~~~ 112 (115)
T 2cpz_A 98 KVQLKRSKNDSKSGP 112 (115)
T ss_dssp EEECCCCSCCCCCCC
T ss_pred EEEEcCCCCcCCCCC
Confidence 999999877655443
No 5
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=3.6e-21 Score=145.87 Aligned_cols=88 Identities=18% Similarity=0.275 Sum_probs=82.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSE---EDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRML 80 (99)
T ss_dssp CCCSCEEEEEECCCTTCCH---HHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34567889 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|+++++++...
T Consensus 81 ~V~~a~~~~~~~ 92 (99)
T 1whw_A 81 HVLPSTIKKEAS 92 (99)
T ss_dssp EEEECCCCSTTC
T ss_pred EEEEcCCCcccc
Confidence 999999876654
No 6
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=2.2e-21 Score=150.92 Aligned_cols=83 Identities=14% Similarity=0.228 Sum_probs=79.0
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
++.++| |.|||++++| ++|+++|++||+|++|+|++|+.|+++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 4 ~p~~~lfV~nL~~~~te---~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V 80 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRE---TFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHA 80 (110)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEECCCCCCCH---HHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 466889 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 023632 96 KKAEPKK 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
++|..++
T Consensus 81 ~~a~~~~ 87 (110)
T 3s8s_A 81 QLDIKGQ 87 (110)
T ss_dssp EECSTTH
T ss_pred EECCCCc
Confidence 9997654
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=5.3e-21 Score=143.70 Aligned_cols=86 Identities=29% Similarity=0.498 Sum_probs=80.7
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++|++|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 79 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITE---DMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 79 (95)
T ss_dssp SCCCEEEEESCCTTCCH---HHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 456788 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCC
Q 023632 96 KKAEPKKPNL 105 (279)
Q Consensus 96 ~~a~~~~~~~ 105 (279)
++++++....
T Consensus 80 ~~a~~~~~~~ 89 (95)
T 2dnz_A 80 GHVTERLDGG 89 (95)
T ss_dssp EESSCCCCCC
T ss_pred EEcccccCCC
Confidence 9998866544
No 8
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.1e-20 Score=147.03 Aligned_cols=90 Identities=21% Similarity=0.416 Sum_probs=83.3
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.+..+.++| |.|||+++++ ++|+++|++||.|++|+|++++.++++++||||+|+++++|++||+.||+++|++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITT---EDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 86 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345667889 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCCC
Q 023632 93 VEVKKAEPKKPNLP 106 (279)
Q Consensus 93 i~V~~a~~~~~~~~ 106 (279)
|+|++++++.....
T Consensus 87 l~V~~a~~~~~~~~ 100 (115)
T 2dgo_A 87 IRTNWATRKPPAPK 100 (115)
T ss_dssp CEEEESSCCCCCSC
T ss_pred EEEEEccCCCCCCc
Confidence 99999988765543
No 9
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-21 Score=147.26 Aligned_cols=89 Identities=20% Similarity=0.383 Sum_probs=82.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+..+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRE---TDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLIL 87 (103)
T ss_dssp CCSSSEEEEEESCCTTCCH---HHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 45567888 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCC
Q 023632 94 EVKKAEPKKPNLP 106 (279)
Q Consensus 94 ~V~~a~~~~~~~~ 106 (279)
+|++++++....+
T Consensus 88 ~v~~a~~~~~~~~ 100 (103)
T 2cq0_A 88 NVEWAKPSTNSGP 100 (103)
T ss_dssp EEEESSCCCCSCC
T ss_pred EEEECCCCCCCCC
Confidence 9999988765543
No 10
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=147.80 Aligned_cols=89 Identities=22% Similarity=0.351 Sum_probs=82.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+....++| |.|||+++++ ++|+++|++||+|++|+|++++.|+++++||||+|+++++|++||+.||+++|++++|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSP---DSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CCSCCCEEEEESCCTTCCH---HHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCeEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 44567889 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCC
Q 023632 94 EVKKAEPKKPNLP 106 (279)
Q Consensus 94 ~V~~a~~~~~~~~ 106 (279)
+|++|++++....
T Consensus 86 ~V~~a~~~~~~~~ 98 (103)
T 2dnm_A 86 RVQVARYGRRDLS 98 (103)
T ss_dssp EEEECSSCCSCCC
T ss_pred EEEECCcCCCCCC
Confidence 9999988665544
No 11
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.7e-21 Score=146.54 Aligned_cols=88 Identities=27% Similarity=0.473 Sum_probs=82.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++|++|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNE---QSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34567889 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|++++++....
T Consensus 85 ~v~~a~~~~~~~ 96 (102)
T 1x5s_A 85 RVDQAGKSSDNR 96 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998876544
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.8e-21 Score=145.83 Aligned_cols=89 Identities=25% Similarity=0.418 Sum_probs=82.7
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.+....++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSE---PLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKP 86 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCH---HHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCB
T ss_pred ccCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 345667889 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCC
Q 023632 93 VEVKKAEPKKPNL 105 (279)
Q Consensus 93 i~V~~a~~~~~~~ 105 (279)
|+|+++++++...
T Consensus 87 l~v~~a~~~~~~~ 99 (105)
T 1x5u_A 87 IRVNKASAHNKNL 99 (105)
T ss_dssp CEEEETTTTSCCC
T ss_pred EEEEECCCCCcCC
Confidence 9999998876543
No 13
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3e-21 Score=147.04 Aligned_cols=90 Identities=27% Similarity=0.423 Sum_probs=83.2
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDD---KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTI 84 (102)
T ss_dssp SCCCCSCEEEESCCSSCCH---HHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEE
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34567888 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCC
Q 023632 94 EVKKAEPKKPNLPQ 107 (279)
Q Consensus 94 ~V~~a~~~~~~~~~ 107 (279)
+|+++++++...+.
T Consensus 85 ~V~~a~~~~~~~~~ 98 (102)
T 2cqb_A 85 RVNLAKPMRIKESG 98 (102)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEeCCCCCCCCCC
Confidence 99999987665543
No 14
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=8.1e-21 Score=145.77 Aligned_cols=90 Identities=21% Similarity=0.372 Sum_probs=83.4
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeec-CCCCCcccEEEEEEcCHHHHHHHHHHc-CCCccCC
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRD-HSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAG 90 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d-~~tg~~rG~aFV~F~s~e~a~~Ai~~l-ng~~l~g 90 (279)
.++...++| |.|||+++++ ++|+++|++||+|++|+|+++ +.++++++||||+|+++++|++||+.| |+++|++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQ---REIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCH---HHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred ccCCCCCEEEEeCCCCcCCH---HHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 355677888 9999999999 999999999999999999999 789999999999999999999999999 9999999
Q ss_pred ceeEEeeccCCCCCCC
Q 023632 91 AQVEVKKAEPKKPNLP 106 (279)
Q Consensus 91 ~~i~V~~a~~~~~~~~ 106 (279)
++|+|++++++.....
T Consensus 87 ~~l~v~~a~~~~~~~~ 102 (107)
T 2cph_A 87 RRLVLEWADSEVTVQS 102 (107)
T ss_dssp CBCEEEECCCCCCCCC
T ss_pred CEEEEEeCCCCCCCCC
Confidence 9999999998766554
No 15
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=7.6e-21 Score=146.87 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=83.5
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC------CC
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN------KL 86 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln------g~ 86 (279)
.+....++| |.|||+++++ ++|+++|++||+|++|+|++|+.|+++++||||+|+++++|++||+.|| ++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~ 86 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEE---EALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGL 86 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCH---HHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCE
T ss_pred CcCCCCCEEEEECCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCc
Confidence 345567888 9999999999 9999999999999999999999999999999999999999999999999 99
Q ss_pred ccCCceeEEeeccCCCCCCCC
Q 023632 87 ELAGAQVEVKKAEPKKPNLPQ 107 (279)
Q Consensus 87 ~l~g~~i~V~~a~~~~~~~~~ 107 (279)
+|++++|+|++++++......
T Consensus 87 ~~~g~~l~v~~a~~~~~~~~~ 107 (111)
T 1x4h_A 87 KLDGRQLKVDLAVTRDEAASG 107 (111)
T ss_dssp ESSSCEEEEECCCCCCCCCCC
T ss_pred EEcCEEEEEEECCCCccCCCC
Confidence 999999999999987665543
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.4e-21 Score=146.23 Aligned_cols=86 Identities=17% Similarity=0.319 Sum_probs=80.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|++++.|+++++||||+|+++++|++||+.||+++|++++|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATE---EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBTTBEEEEEECCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 44566789 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 023632 94 EVKKAEPKKP 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|++|+++.+
T Consensus 96 ~V~~a~~~~~ 105 (106)
T 1p27_B 96 SVDWCFVRGP 105 (106)
T ss_dssp EEEESEESSC
T ss_pred EEEeecCCCC
Confidence 9999988654
No 17
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.85 E-value=4.5e-21 Score=151.68 Aligned_cols=90 Identities=17% Similarity=0.287 Sum_probs=83.1
Q ss_pred cCCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 13 INRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 13 ~~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
.....+.++| |.|||+++|+ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|+++
T Consensus 16 ~~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 16 PQRSVEGWILFVTGVHEEATE---EDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp BCCCSSSEEEEEESCCTTCCH---HHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3455667889 9999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeccCCCCCC
Q 023632 92 QVEVKKAEPKKPNL 105 (279)
Q Consensus 92 ~i~V~~a~~~~~~~ 105 (279)
+|+|++|+++....
T Consensus 93 ~l~v~~a~~~~~~~ 106 (126)
T 3ex7_B 93 PISVDWCFVRGPPK 106 (126)
T ss_dssp BCEEEESEESSSCC
T ss_pred EEEEEEecCCCCCC
Confidence 99999998765543
No 18
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.8e-21 Score=144.04 Aligned_cols=87 Identities=18% Similarity=0.315 Sum_probs=80.3
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCC---CCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHS---TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~---tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.+.++| |.|||+++++ ++|+++|++||+|++|+|++++. |+++++||||+|+++++|++||+.||+++|++++
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTE---ETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHK 79 (98)
T ss_dssp CCCCCEEEESCCTTCCH---HHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 456788 9999999999 99999999999999999999887 6689999999999999999999999999999999
Q ss_pred eEEeeccCCCCCCC
Q 023632 93 VEVKKAEPKKPNLP 106 (279)
Q Consensus 93 i~V~~a~~~~~~~~ 106 (279)
|+|++++++....+
T Consensus 80 l~V~~a~~~~~~~~ 93 (98)
T 2cpf_A 80 LEVRISERATKPAS 93 (98)
T ss_dssp CEEECSSCSSCCCC
T ss_pred EEEEEccCCCCCCC
Confidence 99999988765544
No 19
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1e-21 Score=147.44 Aligned_cols=83 Identities=24% Similarity=0.467 Sum_probs=76.6
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc-CCCccCCceeEE
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQVEV 95 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l-ng~~l~g~~i~V 95 (279)
+++| |.|||+++|| ++|+++|++|| +|++|+|++|+.|+++|+||||+|+++++|++||+.+ |.++|++++|+|
T Consensus 1 S~~i~v~nLp~~~te---~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V 77 (91)
T 2lxi_A 1 SNIVMLRMLPQAATE---DDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSM 77 (91)
T ss_dssp CCEEEEETCCSSCCH---HHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCH---HHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEE
Confidence 4678 9999999999 99999999999 8999999999999999999999999999999999987 457899999999
Q ss_pred eeccCCCCC
Q 023632 96 KKAEPKKPN 104 (279)
Q Consensus 96 ~~a~~~~~~ 104 (279)
++|++++..
T Consensus 78 ~~a~~~~~~ 86 (91)
T 2lxi_A 78 HYSDPKPKI 86 (91)
T ss_dssp ECCCSCCCC
T ss_pred EEcCCCCCC
Confidence 999886543
No 20
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=146.18 Aligned_cols=88 Identities=26% Similarity=0.432 Sum_probs=81.0
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.++.+.++| |.|||++++| ++|+++|++|++|++|+|++++.|+++++||||+|+++++|++||+.||. +|++++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTD---ASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCH---HHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred cCCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 456677889 9999999999 99999999999999999999999999999999999999999999999997 899999
Q ss_pred eEEeeccCCCCCC
Q 023632 93 VEVKKAEPKKPNL 105 (279)
Q Consensus 93 i~V~~a~~~~~~~ 105 (279)
|+|++|+++....
T Consensus 88 l~V~~a~~~~~~~ 100 (116)
T 2cqd_A 88 ANVNLAYLGAKPR 100 (116)
T ss_dssp CEEEESTTTCCCC
T ss_pred EEEEEcccCCCcc
Confidence 9999998764433
No 21
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.4e-21 Score=143.51 Aligned_cols=86 Identities=27% Similarity=0.351 Sum_probs=80.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v-~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
...++| |.|||+++++ ++|+++|++||+|++| +|++|+.++++++||||+|+++++|++||+.||++.|++++|+
T Consensus 3 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 79 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDE---KLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPIT 79 (96)
T ss_dssp SCCCEEEEECCCTTCCH---HHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 456788 9999999999 9999999999999999 9999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCC
Q 023632 95 VKKAEPKKPNL 105 (279)
Q Consensus 95 V~~a~~~~~~~ 105 (279)
|++++++..+.
T Consensus 80 v~~a~~~~~~~ 90 (96)
T 1x5t_A 80 VSYAFKKDSKG 90 (96)
T ss_dssp EEESCCCCCCC
T ss_pred EEEecccCCCC
Confidence 99998876544
No 22
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=143.96 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=81.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.+.+.++| |.|||+++++ ++|+++|++||+|++|+|+++ ++++++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDD---ERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 85 (103)
T ss_dssp CCSSCCCEEEECCCTTCCH---HHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 45577888 9999999999 999999999999999999998 88999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCCC
Q 023632 94 EVKKAEPKKPNLPQP 108 (279)
Q Consensus 94 ~V~~a~~~~~~~~~~ 108 (279)
+|++++++.++...+
T Consensus 86 ~V~~a~~~~~~~~~~ 100 (103)
T 2d9p_A 86 YVALAQRKEERQSGP 100 (103)
T ss_dssp EEEECSSCCCCCCCC
T ss_pred EEEEecccccCCCCC
Confidence 999999877665443
No 23
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=6.3e-21 Score=146.13 Aligned_cols=89 Identities=28% Similarity=0.523 Sum_probs=82.8
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+.+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+. |+++|++++
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQ---ETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCH---HHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 356677899 9999999999 99999999999999999999999999999999999999999999999 999999999
Q ss_pred eEEeeccCCCCCCC
Q 023632 93 VEVKKAEPKKPNLP 106 (279)
Q Consensus 93 i~V~~a~~~~~~~~ 106 (279)
|+|++++++.....
T Consensus 87 l~V~~a~~~~~~~~ 100 (105)
T 2dh8_A 87 IDPKPCTPRGMQPS 100 (105)
T ss_dssp EBCCCSCCSSCCTT
T ss_pred EEEEEccCCCCCCC
Confidence 99999988766543
No 24
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=7.9e-21 Score=145.70 Aligned_cols=89 Identities=18% Similarity=0.319 Sum_probs=82.3
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc---C
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL---A 89 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l---~ 89 (279)
..+.+.++| |.|||++++| ++|+++|++||+|++|+|++|+.|+++++||||+|+++++|++||+.||+++| .
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDE---KDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCH---HHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 345677889 9999999999 99999999999999999999999999999999999999999999999999888 8
Q ss_pred CceeEEeeccCCCCCC
Q 023632 90 GAQVEVKKAEPKKPNL 105 (279)
Q Consensus 90 g~~i~V~~a~~~~~~~ 105 (279)
+++|+|++++++....
T Consensus 85 g~~l~v~~a~~~~~~~ 100 (106)
T 2dgp_A 85 NRPIQVKPADSESRGG 100 (106)
T ss_dssp SSCCEEEECCCCSCCC
T ss_pred CceEEEEECCcccccC
Confidence 9999999998876544
No 25
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.84 E-value=2.1e-21 Score=145.03 Aligned_cols=84 Identities=18% Similarity=0.282 Sum_probs=71.9
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
.+| |+|||+++|| ++|+++|++|| +|++|+|++|+.|+++++||||+|+++++|++||+.||+++|++++|+|+
T Consensus 2 ~~l~V~nL~~~~t~---~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~ 78 (90)
T 3p5t_L 2 IALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 78 (90)
T ss_dssp --CEEESCCTTCCH---HHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEEC
T ss_pred eEEEEeCCCCCCCH---HHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEE
Confidence 467 9999999999 99999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 023632 97 KAEPKKPNLP 106 (279)
Q Consensus 97 ~a~~~~~~~~ 106 (279)
++.++.+..+
T Consensus 79 ~~~~~~~~~~ 88 (90)
T 3p5t_L 79 PSNKLEHHHH 88 (90)
T ss_dssp CC--------
T ss_pred ECCCCccccC
Confidence 9988765543
No 26
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=151.07 Aligned_cols=88 Identities=20% Similarity=0.416 Sum_probs=81.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
++...++| |.|||++++| ++|+++|++||+|++|+|++++.|+++++||||+|+++++|++||+.||+++|++++|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 114 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDE---VQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRL 114 (139)
T ss_dssp CTTTTSEEEEESCSTTCCH---HHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 44566889 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|++|+++..+.
T Consensus 115 ~v~~a~~~~~~~ 126 (139)
T 1u6f_A 115 KVALAASGHQRP 126 (139)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998875543
No 27
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=1.6e-20 Score=137.52 Aligned_cols=81 Identities=21% Similarity=0.403 Sum_probs=77.6
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
+.+| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+|++
T Consensus 1 t~~l~V~nlp~~~t~---~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 77 (83)
T 3md1_A 1 TFNLFVGDLNVNVDD---ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 77 (83)
T ss_dssp CEEEEEECCCTTCCH---HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CeEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEe
Confidence 4678 9999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 023632 98 AEPKK 102 (279)
Q Consensus 98 a~~~~ 102 (279)
|++++
T Consensus 78 a~~~~ 82 (83)
T 3md1_A 78 AAKLE 82 (83)
T ss_dssp CCCCC
T ss_pred cCcCC
Confidence 98764
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=142.58 Aligned_cols=86 Identities=10% Similarity=0.303 Sum_probs=80.3
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
....+.++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+++|++++
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTK---EELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCH---HHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred ccCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345667889 9999999999 9999999999999999999998 9999999999999999999999999999999999
Q ss_pred eEEeeccCCCC
Q 023632 93 VEVKKAEPKKP 103 (279)
Q Consensus 93 i~V~~a~~~~~ 103 (279)
|+|++++++..
T Consensus 88 l~v~~a~~~~~ 98 (100)
T 2do4_A 88 IKVAISNSGPS 98 (100)
T ss_dssp EEEEECCCCSC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.5e-20 Score=142.61 Aligned_cols=88 Identities=20% Similarity=0.365 Sum_probs=81.2
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC---
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--- 90 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g--- 90 (279)
.....++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+++|.+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~ 86 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSE---EDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGAS 86 (105)
T ss_dssp SCCCCCEEEEESCCTTCCH---HHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCS
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCC
Confidence 44567889 9999999999 9999999999999999999998 79999999999999999999999999999998
Q ss_pred ceeEEeeccCCCCCCC
Q 023632 91 AQVEVKKAEPKKPNLP 106 (279)
Q Consensus 91 ~~i~V~~a~~~~~~~~ 106 (279)
++|+|++|+++.++.+
T Consensus 87 ~~l~V~~a~~~~~~~~ 102 (105)
T 2dnh_A 87 SSLVVKFADTDKESGP 102 (105)
T ss_dssp SCCEEEESCSSCCCSC
T ss_pred ccEEEEECccCcccCC
Confidence 9999999998776544
No 30
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.5e-21 Score=147.03 Aligned_cols=89 Identities=20% Similarity=0.300 Sum_probs=82.6
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeE--------EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQ--------EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~--------~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.++.+.++| |.|||+++++ ++|+++|++|++|+ +|+|++++.++++++||||+|+++++|++||+.||
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTL---DDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCH---HHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred ccCCCCCEEEEcCCCCCCCH---HHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 355677889 9999999999 99999999999999 69999999999999999999999999999999999
Q ss_pred CCccCCceeEEeeccCCCCCC
Q 023632 85 KLELAGAQVEVKKAEPKKPNL 105 (279)
Q Consensus 85 g~~l~g~~i~V~~a~~~~~~~ 105 (279)
+++|++++|+|++++++....
T Consensus 87 g~~~~g~~l~V~~a~~~~~~~ 107 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKPPMN 107 (113)
T ss_dssp TCEETTEECEEECSSCCCCST
T ss_pred CCccCCCEEEEEECCCCCCCC
Confidence 999999999999998876554
No 31
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=2.1e-20 Score=142.77 Aligned_cols=86 Identities=17% Similarity=0.328 Sum_probs=79.6
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++|+ |++|+|++++.|+++++||||+|+++++|++|| +||+++|++++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQ---GDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CSSSCEEEEEESCCTTCCH---HHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCeEEEEeCCCCCCCH---HHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 45567888 9999999999 99999999995 999999999999999999999999999999999 899999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|++++++....
T Consensus 86 ~V~~a~~~~~~~ 97 (103)
T 2dng_A 86 RVDIAEGRKQDK 97 (103)
T ss_dssp EEEECCCCCCCC
T ss_pred EEEEecCCCCCC
Confidence 999998866544
No 32
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=138.92 Aligned_cols=82 Identities=21% Similarity=0.395 Sum_probs=76.0
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 4 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 80 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITT---AAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRT 80 (87)
T ss_dssp --CEEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCceEEEEeCCCCCCCH---HHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 356788 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCC
Q 023632 96 KKAEPK 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++|+++
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 999875
No 33
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=141.53 Aligned_cols=90 Identities=22% Similarity=0.428 Sum_probs=81.0
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+.+.++| |.|||+++++ ++|+++|++||+|++|+|++++. .+++||||+|+++++|++||+.||+++|++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRD---PDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCH---HHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345677889 9999999999 99999999999999999999864 38999999999999999999999999999999
Q ss_pred eEEeeccCCCCCCCCC
Q 023632 93 VEVKKAEPKKPNLPQP 108 (279)
Q Consensus 93 i~V~~a~~~~~~~~~~ 108 (279)
|+|++++++....+.+
T Consensus 85 l~v~~a~~~~~~~~~~ 100 (103)
T 2cq3_A 85 IEVNNATARVMTNSGP 100 (103)
T ss_dssp CEEEECCSSCCCCCSS
T ss_pred EEEEEcccCCCCCCCC
Confidence 9999999877655433
No 34
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=1.1e-20 Score=145.88 Aligned_cols=87 Identities=20% Similarity=0.320 Sum_probs=81.4
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
....+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||++.|++++
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQE---DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCH---HHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 345667889 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCCC
Q 023632 93 VEVKKAEPKKP 103 (279)
Q Consensus 93 i~V~~a~~~~~ 103 (279)
|+|++++++.+
T Consensus 98 l~V~~a~~~~~ 108 (110)
T 1oo0_B 98 IQVDWCFVKGP 108 (110)
T ss_dssp CEEEESEESSC
T ss_pred EEEEEcccCCC
Confidence 99999988654
No 35
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=7.4e-20 Score=142.04 Aligned_cols=87 Identities=22% Similarity=0.214 Sum_probs=79.6
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~---~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGW---KKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCH---HHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEE
Confidence 44567888 9999999999 9999999999999999999997 68999999999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|+++++..++.
T Consensus 87 ~v~~a~~~~~~~ 98 (114)
T 2do0_A 87 HVKMDERALPKG 98 (114)
T ss_dssp EEEECSCCCCCS
T ss_pred EEEEcccCCCCC
Confidence 999998655443
No 36
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.9e-20 Score=149.51 Aligned_cols=86 Identities=23% Similarity=0.434 Sum_probs=80.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 42 ~~~~~~~l~V~nLp~~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l 118 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTE---RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 118 (129)
T ss_dssp CCCCSSCBCEETCTTSCCH---HHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34566788 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 023632 94 EVKKAEPKKP 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|++++++++
T Consensus 119 ~V~~a~~~~p 128 (129)
T 2kxn_B 119 RVDFSITKRP 128 (129)
T ss_dssp EESCCSSSSC
T ss_pred EEEEecCCCC
Confidence 9999988764
No 37
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=144.59 Aligned_cols=85 Identities=27% Similarity=0.406 Sum_probs=79.2
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..+.++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+++|++++|+
T Consensus 4 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 79 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNE---KMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIK 79 (116)
T ss_dssp TCSCCEEEEECCTTTCCH---HHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4556788 9999999999 9999999999999999999998 999999999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 023632 95 VKKAEPKKPN 104 (279)
Q Consensus 95 V~~a~~~~~~ 104 (279)
|++|+++...
T Consensus 80 V~~a~~~~~~ 89 (116)
T 2fy1_A 80 VEQAKKPSFQ 89 (116)
T ss_dssp EEECCCSSCS
T ss_pred EEECCCCCCC
Confidence 9999876543
No 38
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=142.71 Aligned_cols=86 Identities=22% Similarity=0.359 Sum_probs=79.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.....++| |.|||+++++ ++|+++|++|+ |++|+|++++.| +++++||||+|+++++|++|| .||+++|++++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTE---ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CSSSCEEEEEESCCSSCCH---HHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCEEEEeCCCCcCCH---HHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 34566888 9999999999 99999999999 999999999988 999999999999999999999 99999999999
Q ss_pred eEEeeccCCCCCC
Q 023632 93 VEVKKAEPKKPNL 105 (279)
Q Consensus 93 i~V~~a~~~~~~~ 105 (279)
|+|+++++++...
T Consensus 86 l~V~~a~~~~~~~ 98 (104)
T 1wi8_A 86 IRVDVADQAQDKD 98 (104)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998876544
No 39
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=140.90 Aligned_cols=87 Identities=21% Similarity=0.376 Sum_probs=80.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhc-CCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc-cCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQ-FGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE-LAGA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~-~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~-l~g~ 91 (279)
+....++| |.|||+++++ ++|+++|++ |++|++|+|++++ ++++++||||+|+++++|++||+.||++. |+++
T Consensus 5 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDD---GMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCH---HHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSS
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCE
Confidence 34566888 9999999999 999999999 9999999999998 99999999999999999999999999999 9999
Q ss_pred eeEEeeccCCCCCC
Q 023632 92 QVEVKKAEPKKPNL 105 (279)
Q Consensus 92 ~i~V~~a~~~~~~~ 105 (279)
+|+|++++++..+.
T Consensus 81 ~l~v~~a~~~~~~~ 94 (104)
T 2dhg_A 81 PVRLSVAIPKASRV 94 (104)
T ss_dssp CCCCCBCCCCCSCC
T ss_pred eEEEEEccCCCcCC
Confidence 99999998766544
No 40
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=139.86 Aligned_cols=83 Identities=22% Similarity=0.412 Sum_probs=78.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+..+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTE---RDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp SCCGGGCEEEESCCSSCCH---HHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45567888 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccC
Q 023632 94 EVKKAEP 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
+|++|++
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.83 E-value=2.2e-20 Score=137.34 Aligned_cols=81 Identities=28% Similarity=0.461 Sum_probs=77.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 80 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDD---KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 80 (85)
T ss_dssp CCCSSEEEEECCCTTCCH---HHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 4567888 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeecc
Q 023632 95 VKKAE 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|++|+
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 99985
No 42
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=140.40 Aligned_cols=87 Identities=20% Similarity=0.303 Sum_probs=78.8
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.++...++| |.|||+++++ ++|+++|++||+|++|+|++++.+ +++||||+|+++++|++||+.||+++|++++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTE---VLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCH---HHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEeCCCccCCH---HHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 345667888 9999999999 999999999999999999998654 6899999999999999999999999999999
Q ss_pred eEEeeccCCCCCC
Q 023632 93 VEVKKAEPKKPNL 105 (279)
Q Consensus 93 i~V~~a~~~~~~~ 105 (279)
|+|++++++..+.
T Consensus 85 l~V~~a~~~~~~~ 97 (103)
T 2cqi_A 85 VKVNWATTPSSQK 97 (103)
T ss_dssp EEEEECCCTTCCC
T ss_pred EEEEECCCCcccc
Confidence 9999998866544
No 43
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=2.6e-20 Score=139.61 Aligned_cols=82 Identities=21% Similarity=0.329 Sum_probs=77.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTN---NDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCCCTTSEEEESCCTTSCH---HHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 45567888 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecc
Q 023632 94 EVKKAE 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+|++|+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999985
No 44
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=2.6e-20 Score=145.58 Aligned_cols=84 Identities=21% Similarity=0.394 Sum_probs=75.0
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
.+.+| |+|||+++|| ++|+++|++||+|++|+|++|+ ..+|+||||+|+++++|++||++||+++|++++|+|+
T Consensus 4 ~~~~lfV~nLp~~~te---~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDN---KALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCEEEECCCCCCCCH---HHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 35678 9999999999 9999999999999999999986 4479999999999999999999999999999999999
Q ss_pred eccCCCCCCC
Q 023632 97 KAEPKKPNLP 106 (279)
Q Consensus 97 ~a~~~~~~~~ 106 (279)
++++++++..
T Consensus 79 ~a~~~~~~~~ 88 (115)
T 4f25_A 79 RFKSRKEREA 88 (115)
T ss_dssp ESSCCCC---
T ss_pred ECCCcccccc
Confidence 9988765543
No 45
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-21 Score=143.89 Aligned_cols=83 Identities=17% Similarity=0.325 Sum_probs=75.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCC--eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC----c
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGD--VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL----E 87 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~--V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~----~ 87 (279)
....-.+| |+|||+++|| ++|+++|++||. |++|+|++|+.|+++||||||+|+++++|++||+.||+. .
T Consensus 5 ~~~~m~tlfV~nL~~~~te---e~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVV---DSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SSCCCCEEEEESCCTTCCH---HHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred cCCccCEEEEeCCCCcCCH---HHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 34456778 9999999999 999999999995 679999999999999999999999999999999999886 4
Q ss_pred cCCceeEEeeccC
Q 023632 88 LAGAQVEVKKAEP 100 (279)
Q Consensus 88 l~g~~i~V~~a~~ 100 (279)
|++++|+|++|++
T Consensus 82 i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 82 IDGKTIGVDFAKS 94 (95)
T ss_dssp ETTEEEEEEECCC
T ss_pred ECCEEEEEEEccC
Confidence 8999999999975
No 46
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.82 E-value=2.7e-20 Score=137.57 Aligned_cols=84 Identities=15% Similarity=0.360 Sum_probs=78.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCC-cccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSR-SRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~-~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|+.++.+.. +++||||+|+++++|++||+.||+.+|++++|+
T Consensus 2 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 78 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTK---DHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEIT 78 (88)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEE
Confidence 356788 9999999999 99999999999999999999987766 899999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|+++.++++
T Consensus 79 v~~a~~~~~ 87 (88)
T 4a8x_A 79 ATAVLAPWP 87 (88)
T ss_dssp EEEECCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.82 E-value=3.4e-20 Score=143.44 Aligned_cols=86 Identities=30% Similarity=0.530 Sum_probs=81.0
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+...++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|++++
T Consensus 21 ~~~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITE---DMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCH---HHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred cCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 345667889 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++++++.
T Consensus 98 l~V~~a~~k~ 107 (108)
T 2jrs_A 98 MKVGHVTERT 107 (108)
T ss_dssp CEEECSCSSC
T ss_pred EEEEEcccCC
Confidence 9999998764
No 48
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.82 E-value=5.2e-20 Score=138.83 Aligned_cols=83 Identities=20% Similarity=0.287 Sum_probs=79.0
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
+++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+|++
T Consensus 2 ~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 78 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTE---EQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGY 78 (96)
T ss_dssp CSEEEEESCCTTCCH---HHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CcEEEEECCCCCCCH---HHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 5788 9999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCC
Q 023632 98 AEPKKPN 104 (279)
Q Consensus 98 a~~~~~~ 104 (279)
|+++...
T Consensus 79 a~~~~~~ 85 (96)
T 2x1f_A 79 SSNSDIS 85 (96)
T ss_dssp CSCSSGG
T ss_pred cCCCCCC
Confidence 9887643
No 49
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.4e-20 Score=140.61 Aligned_cols=88 Identities=18% Similarity=0.257 Sum_probs=80.7
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCC-eEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCccCC
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGD-VQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAG 90 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~-V~~v~i~-~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln--g~~l~g 90 (279)
..+.++| |.|||+++++ ++|+++|++||+ |++|.|+ .++.++++++||||+|+++++|++||+.|| .++|++
T Consensus 5 s~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKR---EEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCCSEEEEEECCCTTSCH---HHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred ccCCCEEEEeCCCCcCCH---HHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 4567889 9999999999 999999999998 9999998 888899999999999999999999999996 599999
Q ss_pred ceeEEeeccCCCCCCC
Q 023632 91 AQVEVKKAEPKKPNLP 106 (279)
Q Consensus 91 ~~i~V~~a~~~~~~~~ 106 (279)
++|+|++|+++.....
T Consensus 82 ~~l~V~~a~~~~~~~~ 97 (109)
T 2dis_A 82 HQIAVDWAEPEIDVDE 97 (109)
T ss_dssp BCCEEEESCSSCSTTT
T ss_pred CeEEEEEcCCCCCcCH
Confidence 9999999998776544
No 50
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=139.83 Aligned_cols=85 Identities=20% Similarity=0.262 Sum_probs=79.6
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeE-EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQ-EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~-~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.....++| |.|||++++| ++|+++|++|++|+ +|+|++|+.++++++||||+|+++++|++||+.||+++|+++.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDE---NFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp CCSSSSEEEECSCCTTCCH---HHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CCCCccEEEEeCCCCCCCH---HHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 34567889 9999999999 99999999999999 9999999999999999999999999999999999999999999
Q ss_pred ----eEEeeccCCC
Q 023632 93 ----VEVKKAEPKK 102 (279)
Q Consensus 93 ----i~V~~a~~~~ 102 (279)
|+|++|++..
T Consensus 82 ~~~~l~v~~a~~~~ 95 (99)
T 2div_A 82 PAKRFKLNYATYSG 95 (99)
T ss_dssp SCEECCEEETTCCS
T ss_pred cceeEEEeecCCCC
Confidence 9999997754
No 51
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=138.72 Aligned_cols=87 Identities=23% Similarity=0.383 Sum_probs=79.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+. .++|++++|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~l 85 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTE---QDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMIDGRWC 85 (103)
T ss_dssp CCCCCCCEEEESCCSSCCH---HHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEETTEEE
T ss_pred ccCCCCEEEEEcCCCcCCH---HHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeCCeEE
Confidence 45567888 9999999999 99999999999999999999999999999999999999999999995 579999999
Q ss_pred EEeeccCCCCCCC
Q 023632 94 EVKKAEPKKPNLP 106 (279)
Q Consensus 94 ~V~~a~~~~~~~~ 106 (279)
+|++++++.....
T Consensus 86 ~v~~a~~~~~~~~ 98 (103)
T 2cqg_A 86 DCKLPNSKQSQDS 98 (103)
T ss_dssp EEECCCTTCCCCC
T ss_pred EEEecCCCCcCCC
Confidence 9999998766543
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=6.8e-20 Score=138.95 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=78.5
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE--------HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~--------v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
......++| |.|||+++++ ++|+++|++||.|++ |+|++++.|+++++||||+|+++++|++||+.||
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTI---ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCH---HHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 455677889 9999999999 999999999999999 9999999999999999999999999999999999
Q ss_pred CCccCCceeEEeecc
Q 023632 85 KLELAGAQVEVKKAE 99 (279)
Q Consensus 85 g~~l~g~~i~V~~a~ 99 (279)
+++|++++|+|++|+
T Consensus 85 g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEFSGNPIKVSFAT 99 (99)
T ss_dssp TCBSSSSBCEEEECC
T ss_pred CCEeCCcEEEEEecC
Confidence 999999999999874
No 53
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-20 Score=146.90 Aligned_cols=85 Identities=31% Similarity=0.538 Sum_probs=79.5
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|++++.|+++++||||+|+++++|++||+. |+++|++++|+|
T Consensus 25 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V 100 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTE---ESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEP 100 (116)
T ss_dssp HHHTEEEEECCTTCCCH---HHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEE
Confidence 345788 9999999999 99999999999999999999999999999999999999999999999 999999999999
Q ss_pred eeccCCCCCC
Q 023632 96 KKAEPKKPNL 105 (279)
Q Consensus 96 ~~a~~~~~~~ 105 (279)
++++++....
T Consensus 101 ~~a~~~~~~~ 110 (116)
T 1x4b_A 101 KRAVAREESG 110 (116)
T ss_dssp ECCSSCCCCC
T ss_pred EECCCCccCC
Confidence 9998876544
No 54
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.6e-19 Score=139.29 Aligned_cols=80 Identities=20% Similarity=0.327 Sum_probs=73.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC----
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG---- 90 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g---- 90 (279)
....++| |.|||+++|| ++|+++|++||+|++|+|+++ +||||+|+++++|++||+.||+++|++
T Consensus 12 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~ 81 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSW---QDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 81 (108)
T ss_dssp CSCCCEEEEESCCSSCCH---HHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCc
Confidence 4456788 9999999999 999999999999999999876 799999999999999999999999999
Q ss_pred -ceeEEeeccCCCCCC
Q 023632 91 -AQVEVKKAEPKKPNL 105 (279)
Q Consensus 91 -~~i~V~~a~~~~~~~ 105 (279)
++|+|++|+++....
T Consensus 82 ~~~i~V~~a~~~~~~~ 97 (108)
T 1x4c_A 82 TAYIRVKVDGPRSPSY 97 (108)
T ss_dssp EEEEEEEESSCCSCCC
T ss_pred ceEEEEEeCCCCCCCC
Confidence 999999998865543
No 55
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=7.4e-20 Score=141.70 Aligned_cols=87 Identities=37% Similarity=0.594 Sum_probs=76.7
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+...+.++| |.|||+++++ ++|+++|++||+|++|+|++++.|+++++||||+|+++++|++||+.++ ++|++++
T Consensus 20 ~~~~~~~~lfV~nLp~~~te---~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g~~ 95 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQ---EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKT 95 (109)
T ss_dssp ------CCEEEESCCTTCCH---HHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCH---HHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCCEE
Confidence 345567888 9999999999 9999999999999999999999999999999999999999999999975 9999999
Q ss_pred eEEeeccCCCCC
Q 023632 93 VEVKKAEPKKPN 104 (279)
Q Consensus 93 i~V~~a~~~~~~ 104 (279)
|+|+++.++..+
T Consensus 96 l~V~~a~~~~~~ 107 (109)
T 2rs2_A 96 IDPKVAFPRRAQ 107 (109)
T ss_dssp EEEEECCCCCCC
T ss_pred EEEEEccCCCCC
Confidence 999999876543
No 56
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=1.4e-20 Score=143.45 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=77.6
Q ss_pred CCcee-eeCCCC------CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 18 TTQKM-TGLSLT------PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 18 ~~~~l-V~nLp~------~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
..++| |.|||+ ++++ ++|+++|++||+|++|+|++|+.|+++++||||+|+++++|++||+.||+++|++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~---~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLK---KALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHH---HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHH---HHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 45778 999999 9999 9999999999999999999999999999999999999999999999999999999
Q ss_pred -ceeEEeeccCCC
Q 023632 91 -AQVEVKKAEPKK 102 (279)
Q Consensus 91 -~~i~V~~a~~~~ 102 (279)
++|+|++|++++
T Consensus 82 ~r~l~V~~a~~~~ 94 (100)
T 3ns6_A 82 KHRLFLYTMKDVE 94 (100)
T ss_dssp SCBCEEEESHHHH
T ss_pred CeEEEEEECchhh
Confidence 999999998753
No 57
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=139.94 Aligned_cols=84 Identities=12% Similarity=0.334 Sum_probs=76.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.+.+.++| |.|||+++++ ++|+++|++|++|++|+|+.+ .++++||||+|+++++|++||+.||+++|++++|
T Consensus 18 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRT---KDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp CCCCSSEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45567889 9999999999 999999999999999999654 4579999999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|+++++++..
T Consensus 92 ~V~~a~~~~~~ 102 (109)
T 1x4a_A 92 RVEFPRSGRGT 102 (109)
T ss_dssp EEECCCCCCCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 58
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.81 E-value=9.9e-20 Score=134.93 Aligned_cols=81 Identities=21% Similarity=0.370 Sum_probs=76.6
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++|| .||+++|++++|+|+
T Consensus 5 ~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~ 80 (89)
T 3ucg_A 5 DARSIYVGNVDYGATA---EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVI 80 (89)
T ss_dssp HHTEEEEESCCTTCCH---HHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEE
T ss_pred cCCEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEE
Confidence 35788 9999999999 999999999999999999999999999999999999999999999 899999999999999
Q ss_pred eccCCC
Q 023632 97 KAEPKK 102 (279)
Q Consensus 97 ~a~~~~ 102 (279)
+++++.
T Consensus 81 ~a~~~~ 86 (89)
T 3ucg_A 81 PKRTNR 86 (89)
T ss_dssp ETTTTS
T ss_pred EccCCC
Confidence 997743
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=8.7e-20 Score=137.00 Aligned_cols=83 Identities=22% Similarity=0.417 Sum_probs=76.8
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+...++| |.|||+++++ ++|+++|++||+|++|+|++++. +++++||||+|+++++|++||+.||+++|++++
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~---~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVRE---EILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCH---HHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEECCCCCCCH---HHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 345567889 9999999999 99999999999999999999985 899999999999999999999999999999999
Q ss_pred eEEeeccC
Q 023632 93 VEVKKAEP 100 (279)
Q Consensus 93 i~V~~a~~ 100 (279)
|+|++|+.
T Consensus 87 l~V~~a~~ 94 (95)
T 2ywk_A 87 INVSGPSS 94 (95)
T ss_dssp CEEECCCC
T ss_pred EEEEEcCC
Confidence 99999864
No 60
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.81 E-value=1.6e-19 Score=134.80 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=78.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++||+|++|+|+++ ++++++||||+|+++++|++||+.||+++|++++|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~---~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l 78 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTW---KMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 78 (92)
T ss_dssp SSSSCCEEEECSCCTTCCH---HHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCC
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34567888 9999999999 999999999999999999985 78999999999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|++++++...
T Consensus 79 ~v~~a~~~~~~ 89 (92)
T 2dgv_A 79 DVRIDRNASGP 89 (92)
T ss_dssp CCEECSCCSSC
T ss_pred EEEEcCCCCCC
Confidence 99999876543
No 61
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=137.29 Aligned_cols=82 Identities=9% Similarity=0.101 Sum_probs=75.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHH----HHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~----~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
..+.++| |.|||+++++ ++|+ ++|++||+|++|+|++|+.+ ++||||+|+++++|++||+.||+++|++
T Consensus 6 ~~~~~~l~V~nL~~~~~~---~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSR---KELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CSSCEEEEEESCCTTSCH---HHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456788 9999999999 8888 99999999999999999876 7899999999999999999999999999
Q ss_pred ceeEEeeccCCCC
Q 023632 91 AQVEVKKAEPKKP 103 (279)
Q Consensus 91 ~~i~V~~a~~~~~ 103 (279)
++|+|++|+++..
T Consensus 80 r~l~V~~a~~~~~ 92 (96)
T 2dgx_A 80 KKILVSLATGASG 92 (96)
T ss_dssp EEEEEEECCCSSC
T ss_pred eEEEEEEcCCCCC
Confidence 9999999977544
No 62
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=4e-20 Score=147.64 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=80.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEE--EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC----c
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE--HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL----E 87 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~--v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~----~ 87 (279)
.+...++| |.|||+++|| ++|+++|++||+|+. |+|++|+.|+++|+||||+|+++ +|++||+.||++ +
T Consensus 19 ~~~~~~~lfV~nL~~~~te---~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTM---DSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CSCCCCEEEECSCCTTCCS---HHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 44567889 9999999999 999999999999976 99999999999999999999999 999999999999 9
Q ss_pred cCCceeEEeeccCCCCCCC
Q 023632 88 LAGAQVEVKKAEPKKPNLP 106 (279)
Q Consensus 88 l~g~~i~V~~a~~~~~~~~ 106 (279)
|++++|+|++|++++....
T Consensus 95 ~~gr~l~V~~a~~~~~~~~ 113 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKRDMA 113 (131)
T ss_dssp GGGCCCCCEECCCSCCCCC
T ss_pred CCCEEEEEEECCCCCCCCC
Confidence 9999999999988765443
No 63
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.81 E-value=7.6e-20 Score=149.99 Aligned_cols=88 Identities=23% Similarity=0.371 Sum_probs=81.7
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++++ ++|+++|++||+|++|+|++|+.++++++||||+|+++++|++||+.||+++|++++|+
T Consensus 67 ~~~~~~l~v~nl~~~~~~---~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 143 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSP---DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 143 (158)
T ss_dssp CCBCCEEEEESCCTTCCH---HHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456888 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCC
Q 023632 95 VKKAEPKKPNLP 106 (279)
Q Consensus 95 V~~a~~~~~~~~ 106 (279)
|++|+++.++.+
T Consensus 144 v~~a~~~~~~~~ 155 (158)
T 2kn4_A 144 VQMARYGRPPDS 155 (158)
T ss_dssp EEEECCSSCCCC
T ss_pred EEECCCCCCCCC
Confidence 999988765543
No 64
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4.2e-20 Score=139.65 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=78.3
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++|++|++++|+.++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~---~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSI---DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCSSEEEEEESCCTTCCH---HHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 34556788 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCC
Q 023632 94 EVKKAEPK 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++.+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998754
No 65
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.81 E-value=1.6e-19 Score=138.63 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=76.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+++|++++|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSD---ADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCH---HHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 44567888 9999999999 9999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEeecc
Q 023632 94 EVKKAE 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+|++|.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999985
No 66
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=6e-20 Score=143.54 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=77.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
++.+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 36 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTD---TDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp CCCCSEEEEEECSCTTCCH---HHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34566889 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecc
Q 023632 94 EVKKAE 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999874
No 67
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.81 E-value=1.2e-19 Score=150.56 Aligned_cols=90 Identities=19% Similarity=0.300 Sum_probs=79.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++||+|+.|.|++++.|+++++||||+|.++++|++||+.||+++|.+++|
T Consensus 68 ~~~~~~~l~V~nLp~~~t~---~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 68 RSVEGWILFVTSIHEEAQE---DEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CCC-CEEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34556778 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCCC
Q 023632 94 EVKKAEPKKPNLPQ 107 (279)
Q Consensus 94 ~V~~a~~~~~~~~~ 107 (279)
+|++|+++..+...
T Consensus 145 ~V~~a~~~~~~~~~ 158 (165)
T 1rk8_A 145 QVDWCFVKGPKRVK 158 (165)
T ss_dssp EEEESEECC-----
T ss_pred EEEEecCCCCCCCC
Confidence 99999887665543
No 68
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=4.1e-20 Score=148.69 Aligned_cols=89 Identities=22% Similarity=0.366 Sum_probs=82.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+....++| |.|||+++|+ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|
T Consensus 43 ~~~~~~~l~V~nLp~~~te---~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 119 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSP---DTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 119 (135)
T ss_dssp SGGGCCCEEEECCCSSCHH---HHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556788 9999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCC
Q 023632 94 EVKKAEPKKPNLP 106 (279)
Q Consensus 94 ~V~~a~~~~~~~~ 106 (279)
+|+++++++++..
T Consensus 120 ~V~~a~~~~~~~~ 132 (135)
T 2lea_A 120 RVQMARYGRPPDS 132 (135)
T ss_dssp EEEECCCCCCCTT
T ss_pred EEEECCCCCCCcc
Confidence 9999988665543
No 69
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=134.45 Aligned_cols=82 Identities=22% Similarity=0.334 Sum_probs=76.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++| .|++|+|+++ .++++++||||+|+++++|++||+ ||+++|++++|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~---~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i 79 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTE---KNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYI 79 (91)
T ss_dssp CCCCCCEEEEECCCSSCCH---HHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEE
T ss_pred CCCCccEEEEECCCCCCCH---HHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEE
Confidence 44567888 9999999999 9999999999 9999999999 789999999999999999999999 99999999999
Q ss_pred EEeeccCCC
Q 023632 94 EVKKAEPKK 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|++|+++.
T Consensus 80 ~v~~a~~~~ 88 (91)
T 2dgw_A 80 EVFREKSGP 88 (91)
T ss_dssp EEEEESSCC
T ss_pred EEEECCcCC
Confidence 999998764
No 70
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=1.8e-19 Score=133.26 Aligned_cols=81 Identities=35% Similarity=0.599 Sum_probs=75.1
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+.+.+.++| |.|||+++++ ++|+++|++||+|++|+|++++.|+++++||||+|+++++|++||+. ++++|++++
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~ 81 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSK---KDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRV 81 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCH---HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEE
Confidence 345677889 9999999999 99999999999999999999999999999999999999999999976 788999999
Q ss_pred eEEeec
Q 023632 93 VEVKKA 98 (279)
Q Consensus 93 i~V~~a 98 (279)
|+|++|
T Consensus 82 i~v~~A 87 (87)
T 3s7r_A 82 IDPKKA 87 (87)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999976
No 71
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.80 E-value=1.1e-20 Score=165.21 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=76.8
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..++| |.|||++||| ++|+++|++|| +|++|+|++|+.|+++|+||||+|+++++|++||++||+++|++++|+
T Consensus 67 ~~~~lfVgnL~~~~te---~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~ 143 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTD---EDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPV 143 (229)
T ss_dssp --CEEEEESCCTTCCH---HHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCE
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeE
Confidence 45678 9999999999 99999999999 999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCC
Q 023632 95 VKKAEPKK 102 (279)
Q Consensus 95 V~~a~~~~ 102 (279)
|++|+++.
T Consensus 144 V~~a~~~~ 151 (229)
T 3q2s_C 144 VTPVNKQF 151 (229)
T ss_dssp EEECCHHH
T ss_pred EEECCCCc
Confidence 99997643
No 72
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=140.80 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=77.9
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHH---HHHhcCCCeEEEEEeecCCCC---CcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFK---DFFMQFGDVQEHQIMRDHSTS---RSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~---~~F~~~G~V~~v~i~~d~~tg---~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
+....++| |.|||++++| ++|+ ++|++||+|++|+|++++.+. ++++||||+|+++++|++||+.||+++
T Consensus 11 r~~~~~~l~V~nLp~~~~~---~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLAD---PEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp CCCCSSCEEEEEECTTTCC---HHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred cccCCCEEEEECCCCCCCH---HHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 44566788 9999999999 9999 999999999999999988744 566999999999999999999999999
Q ss_pred cCCceeEEeeccCCCC
Q 023632 88 LAGAQVEVKKAEPKKP 103 (279)
Q Consensus 88 l~g~~i~V~~a~~~~~ 103 (279)
|++++|+|++|+++..
T Consensus 88 ~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 88 VDGRTLKASLGTTKYC 103 (111)
T ss_dssp ETTEEEEEESCCCCSC
T ss_pred ECCEEEEEEecccccc
Confidence 9999999999988753
No 73
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.1e-20 Score=140.54 Aligned_cols=85 Identities=22% Similarity=0.434 Sum_probs=79.8
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||++.|++++|+|
T Consensus 6 ~~~~~l~V~nlp~~~~~---~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATE---EQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp HHHSCEEEESCCTTSCH---HHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CCccEEEEeCCCCcCCH---HHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 345788 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 023632 96 KKAEPKKPN 104 (279)
Q Consensus 96 ~~a~~~~~~ 104 (279)
++|+++...
T Consensus 83 ~~a~~~~~~ 91 (104)
T 1p1t_A 83 DNAASEKNK 91 (104)
T ss_dssp EETTCTTHH
T ss_pred EeCCCccch
Confidence 999876543
No 74
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=5.7e-20 Score=139.94 Aligned_cols=84 Identities=21% Similarity=0.364 Sum_probs=74.6
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecC-CCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDH-STSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~-~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
......++| |.|||+++++ ++|+++|++|| |++|+|++++ .++++++||||+|+++++|++|| .||+++|+++
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTE---ESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ------CEEEESCCSSCCSS---SHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCCCCcEEEEeCCCCCCCH---HHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 345667889 9999999999 99999999999 9999999998 69999999999999999999999 8999999999
Q ss_pred eeEEeeccCCC
Q 023632 92 QVEVKKAEPKK 102 (279)
Q Consensus 92 ~i~V~~a~~~~ 102 (279)
+|+|++++++.
T Consensus 89 ~l~V~~a~~~~ 99 (100)
T 2j76_E 89 RIRVDVADQAQ 99 (100)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEeccCCC
Confidence 99999998754
No 75
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=4.3e-20 Score=138.68 Aligned_cols=82 Identities=12% Similarity=0.210 Sum_probs=75.2
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
.+..++| |.|||+++++ ++|+++|++|++|++++|+.++.++++++||||+|+++++|++||+.||+++|++++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~ 88 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSI---DEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 88 (95)
T ss_dssp ---CEEEEEECCCTTCCH---HHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEE
Confidence 3456888 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccC
Q 023632 95 VKKAEP 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|+++.+
T Consensus 89 v~~a~s 94 (95)
T 2ek1_A 89 LSGPSS 94 (95)
T ss_dssp EECCC-
T ss_pred EEeccC
Confidence 998764
No 76
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.4e-21 Score=147.99 Aligned_cols=84 Identities=20% Similarity=0.368 Sum_probs=78.5
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|++++.|+++++||||+|+++++|++|| .||+++|+++.|+|
T Consensus 23 ~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRP---RDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHHTEEEEESCCTTCCH---HHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 345788 9999999999 999999999999999999999999999999999999999999999 89999999999999
Q ss_pred eeccCCCCC
Q 023632 96 KKAEPKKPN 104 (279)
Q Consensus 96 ~~a~~~~~~ 104 (279)
++++++..+
T Consensus 99 ~~a~~~~~~ 107 (114)
T 2cq4_A 99 QASQAEKNR 107 (114)
T ss_dssp EEHHHHHHH
T ss_pred EecCCCccC
Confidence 999876543
No 77
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=138.77 Aligned_cols=82 Identities=18% Similarity=0.168 Sum_probs=74.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++|| ++|+++|++|+.| +|+|++|+ ++++++||||+|+++++|++||+ +|+++|+++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i 84 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATE---NDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYV 84 (102)
T ss_dssp CCSSSCEEEEESCCTTCCH---HHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 34566788 9999999999 9999999999955 99999998 89999999999999999999995 69999999999
Q ss_pred EEeeccCCC
Q 023632 94 EVKKAEPKK 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|.++.++.
T Consensus 85 ~V~~~~~~~ 93 (102)
T 1wez_A 85 ELFLNSTAG 93 (102)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999987654
No 78
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=137.62 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=77.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEE-EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE-HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~-v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+....++| |.|||+++|| ++|+++|++|+.|++ |+|+++ .++++++||||+|+++++|++||+. |+++|+++.
T Consensus 11 ~~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSK---EEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp SCSCCCEEEEESCCTTCCH---HHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 44567888 9999999999 999999999999998 888888 7999999999999999999999998 999999999
Q ss_pred eEEeeccCCCCC
Q 023632 93 VEVKKAEPKKPN 104 (279)
Q Consensus 93 i~V~~a~~~~~~ 104 (279)
|+|.++.+++..
T Consensus 86 i~v~~~~~~~~~ 97 (104)
T 1wg5_A 86 IEIFKSSRAEVR 97 (104)
T ss_dssp CEEEEECTTTSC
T ss_pred EEEEECCHHHHH
Confidence 999998765543
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.6e-19 Score=139.23 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=74.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCccCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln--g~~l~g~ 91 (279)
.+.+.++| |+|||+++|| ++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.|+ +.+|+++
T Consensus 12 ~~~~~~~LfV~nLp~~vte---~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr 82 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTE---GEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 82 (105)
T ss_dssp CCCCCCEEEECSCCTTSCH---HHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 34567888 9999999999 999999999999999999976 6899999999999999999876 4789999
Q ss_pred eeEEeeccCCCCCCC
Q 023632 92 QVEVKKAEPKKPNLP 106 (279)
Q Consensus 92 ~i~V~~a~~~~~~~~ 106 (279)
+|+|++|+++.....
T Consensus 83 ~l~V~~A~~~~~~~~ 97 (105)
T 1sjq_A 83 PIYIQFSNHKELKTD 97 (105)
T ss_dssp ECCBCCCSSSSCCCT
T ss_pred EEEEEEcCCCCCCcc
Confidence 999999988765543
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.80 E-value=3.7e-19 Score=140.44 Aligned_cols=88 Identities=15% Similarity=0.245 Sum_probs=81.2
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+++|++++|+
T Consensus 32 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 107 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSD---ADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 107 (124)
T ss_dssp CSSCEEEEEESCCSSCCH---HHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4556788 9999999999 9999999999999999999998 999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCC
Q 023632 95 VKKAEPKKPNLPQ 107 (279)
Q Consensus 95 V~~a~~~~~~~~~ 107 (279)
|++|.++....+.
T Consensus 108 V~~a~~~~~~~~~ 120 (124)
T 2kt5_A 108 IQLVASQIDLEHH 120 (124)
T ss_dssp EEEECCTTCCCCC
T ss_pred EEEeCCCCCCCCC
Confidence 9999887665543
No 81
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-19 Score=131.48 Aligned_cols=80 Identities=24% Similarity=0.459 Sum_probs=73.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++||+|++|+|+ ++||||+|+++++|++||+.||+++|++++|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 72 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATE---QEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNI 72 (90)
T ss_dssp CSSCCEEEEEESCCSSCCH---HHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCeEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEE
Confidence 45667889 9999999999 9999999999999999997 5799999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|++++++....
T Consensus 73 ~v~~a~~~~~~~ 84 (90)
T 2dnq_A 73 NVEASKNKSKAS 84 (90)
T ss_dssp EEECSSCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998876544
No 82
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=148.81 Aligned_cols=81 Identities=21% Similarity=0.304 Sum_probs=76.5
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G--~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..++| |.|||++++| ++|+++|++|| +|++|+|++|+.|++++|||||+|+++++|++||+.||+++|++++|+
T Consensus 54 ~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~ 130 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTD---QQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVD 130 (156)
T ss_dssp --CEEEEECCCTTCCH---HHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeE
Confidence 45788 9999999999 99999999999 999999999999999999999999999999999999999999999999
Q ss_pred EeeccCC
Q 023632 95 VKKAEPK 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++|.++
T Consensus 131 V~~a~~~ 137 (156)
T 3n9u_C 131 VRPATRQ 137 (156)
T ss_dssp EEECCHH
T ss_pred EEEcCCC
Confidence 9999764
No 83
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=135.86 Aligned_cols=85 Identities=25% Similarity=0.384 Sum_probs=77.1
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
......++| |.|||+++++ ++|+++|++| .+|+|++++.++++++||||+|+++++|++||+.||+++|++++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTE---ETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCH---HHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCccCH---HHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 345677888 9999999999 9999999977 47888999899999999999999999999999999999999999
Q ss_pred eEEeeccCCCCC
Q 023632 93 VEVKKAEPKKPN 104 (279)
Q Consensus 93 i~V~~a~~~~~~ 104 (279)
|+|++|+++.+.
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 999999886553
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=137.84 Aligned_cols=81 Identities=15% Similarity=0.196 Sum_probs=75.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
++.+.++| |.|||+++|+ ++|+++|++||+|++|+|++|+. ++++|||||+|+++++|++||+ +|+++|++++|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te---~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATL---DDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp SCSGGGCEEEECCCTTCCH---HHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred ccCCCCEEEEECCCCCCCH---HHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 45667889 9999999999 99999999999999999999987 9999999999999999999999 79999999999
Q ss_pred EEeeccC
Q 023632 94 EVKKAEP 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
+|+++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998764
No 85
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=7.2e-19 Score=134.33 Aligned_cols=82 Identities=21% Similarity=0.373 Sum_probs=73.6
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++|+ ++|+++|++||+|++|+|++ +||||+|+++++|++||+.||+++|++++|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~---~~l~~~F~~~G~i~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTE---EILEKAFSQFGKLERVKKLK--------DYAFIHFDERDGAVKAMEEMNGKDLEGENI 75 (103)
T ss_dssp CCCCCCCEEEECCCTTCCH---HHHHHHHHHHSCEEEEEECS--------SCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEC--------CEEEEEeCCHHHHHHHHHHHCCCccCCCEE
Confidence 34566888 9999999999 99999999999999999873 499999999999999999999999999999
Q ss_pred EEeeccCCCCCCCC
Q 023632 94 EVKKAEPKKPNLPQ 107 (279)
Q Consensus 94 ~V~~a~~~~~~~~~ 107 (279)
+|++++++......
T Consensus 76 ~v~~a~~~~~~~~~ 89 (103)
T 2dgu_A 76 EIVFAKPPDQKRKE 89 (103)
T ss_dssp EEEECCCCCCCCCC
T ss_pred EEEEcCCCcccchh
Confidence 99999887665543
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=4.2e-19 Score=139.92 Aligned_cols=82 Identities=17% Similarity=0.356 Sum_probs=77.1
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++|| .||+++|++++|+|+
T Consensus 35 ~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTA---QDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HHTEEEEEEECTTCCH---HHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 35788 9999999999 999999999999999999999999999999999999999999999 799999999999999
Q ss_pred eccCCCC
Q 023632 97 KAEPKKP 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
++++...
T Consensus 111 ~a~~~~~ 117 (124)
T 2jwn_A 111 PKRTNMP 117 (124)
T ss_dssp ESSCCCS
T ss_pred ECCCCCC
Confidence 9986544
No 87
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.3e-20 Score=143.07 Aligned_cols=89 Identities=22% Similarity=0.238 Sum_probs=76.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..+.++| |.|||+++|+ ++|+++|++||.|++|.|..+..++++++||||+|+++++|++||+.||+++|++++|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 98 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTE---RDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILV 98 (115)
T ss_dssp CSCCSEEEEECCCTTCCH---HHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3456889 9999999999 99999999999995443333333788999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCC
Q 023632 95 VKKAEPKKPNLPQ 107 (279)
Q Consensus 95 V~~a~~~~~~~~~ 107 (279)
|++|+++..+.+.
T Consensus 99 v~~a~~~~~~~~~ 111 (115)
T 2cpx_A 99 IEFGKNKKQRSSG 111 (115)
T ss_dssp EEECCCCSCCCCC
T ss_pred EEEccCCCCCCCC
Confidence 9999987665543
No 88
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=135.14 Aligned_cols=84 Identities=17% Similarity=0.334 Sum_probs=75.3
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.+.+.++| |.|||+++++ ++|+++|++|++| +|+++ .++++++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATE---ETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCH---HHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 45667889 9999999999 9999999999977 56666 688999999999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|++++++....
T Consensus 84 ~v~~a~~~~~~~ 95 (101)
T 2fc9_A 84 RLELQGPRGSPN 95 (101)
T ss_dssp EEEECSSCCCCC
T ss_pred EEEEcCCCCCCC
Confidence 999998875443
No 89
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.4e-20 Score=135.06 Aligned_cols=80 Identities=13% Similarity=0.301 Sum_probs=75.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|+++.|+|
T Consensus 3 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 79 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTD---QDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79 (85)
T ss_dssp CCCCEEEEESCCTTCCH---HHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCS
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEee
Confidence 456888 9999999999 999999999999999999999999999999999999999999999999999999999988
Q ss_pred eecc
Q 023632 96 KKAE 99 (279)
Q Consensus 96 ~~a~ 99 (279)
+++.
T Consensus 80 ~~~~ 83 (85)
T 1x4e_A 80 SGPS 83 (85)
T ss_dssp SCCC
T ss_pred cCCC
Confidence 7653
No 90
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=136.38 Aligned_cols=84 Identities=15% Similarity=0.318 Sum_probs=76.6
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+.+...++| |.|||+++++ ++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.||+++|++++
T Consensus 20 ~~~~~~~~l~V~nl~~~~t~---~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 90 (109)
T 1x4g_A 20 QSSPKNCTVYCGGIASGLTD---QLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHV 90 (109)
T ss_dssp HSCSSCCEEEEECCSSCCCH---HHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 355677889 9999999999 999999999999999999876 689999999999999999999999999999
Q ss_pred eEEeeccCCCCCCC
Q 023632 93 VEVKKAEPKKPNLP 106 (279)
Q Consensus 93 i~V~~a~~~~~~~~ 106 (279)
|+|++++++.....
T Consensus 91 l~v~~a~~~~~~~~ 104 (109)
T 1x4g_A 91 VKCYWGKESPDMTS 104 (109)
T ss_dssp CEEECCCCCCSSCC
T ss_pred EEEEecCCCCCCCC
Confidence 99999988765443
No 91
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.79 E-value=1.7e-19 Score=129.68 Aligned_cols=74 Identities=38% Similarity=0.608 Sum_probs=71.1
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
+| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+ ||+++|++++|+|++|
T Consensus 1 ~l~v~nlp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTV---EDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCH---HHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCH---HHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 47 9999999999 9999999999999999999999999999999999999999999998 8999999999999875
No 92
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.78 E-value=1.7e-19 Score=140.51 Aligned_cols=85 Identities=13% Similarity=0.203 Sum_probs=71.7
Q ss_pred hhhcCCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 10 TMFINRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 10 ~~~~~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
.++.......++| |.|||++++| ++|+++|++|| +|+.|+|+.+ ++++||||+|+++++|++||+.||+.+
T Consensus 19 ~~~~~~p~~~~~l~VgnLp~~~te---~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~ 91 (111)
T 2jvr_A 19 SHMSKLPAKRYRITMKNLPEGCSW---QDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIE 91 (111)
T ss_dssp ------CCCCEEEEEECSSCCCCH---HHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEE
T ss_pred hhcCCCCCCCCEEEEECCCCCCCH---HHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCE
Confidence 3344455567788 9999999999 99999999999 8999988643 478999999999999999999999999
Q ss_pred cCCceeEEeeccCC
Q 023632 88 LAGAQVEVKKAEPK 101 (279)
Q Consensus 88 l~g~~i~V~~a~~~ 101 (279)
|++++|+|++++.+
T Consensus 92 l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 92 FRGSVITVERDDNP 105 (111)
T ss_dssp ETTEEEEEEESCC-
T ss_pred ECCeEEEEEECCCC
Confidence 99999999998754
No 93
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.8e-19 Score=129.92 Aligned_cols=76 Identities=41% Similarity=0.617 Sum_probs=72.7
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.+| ++|++++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~---~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQ---EGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCS---HHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 467 9999999999 9999999999999999999999999999999999999999999999999 9999999999987
Q ss_pred c
Q 023632 99 E 99 (279)
Q Consensus 99 ~ 99 (279)
.
T Consensus 77 ~ 77 (77)
T 1uaw_A 77 F 77 (77)
T ss_dssp C
T ss_pred C
Confidence 3
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=7.1e-19 Score=134.72 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=73.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc--CCCccCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG--NKLELAGA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l--ng~~l~g~ 91 (279)
...++++| |.|||++++| ++|+++|++||+|++|.|+++ |+||||+|+++++|++||+.| +..+|.++
T Consensus 11 ~~~p~~~l~V~nLp~~~te---~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTE---TEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp CSSCCSEEEEESCCTTCCH---HHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 44567889 9999999999 999999999999999998865 789999999999999999976 56789999
Q ss_pred eeEEeeccCCCCCCC
Q 023632 92 QVEVKKAEPKKPNLP 106 (279)
Q Consensus 92 ~i~V~~a~~~~~~~~ 106 (279)
+|+|++|+++.....
T Consensus 82 ~l~V~~a~~~~~~~~ 96 (101)
T 2cq1_A 82 PIYIQYSNHKELKTS 96 (101)
T ss_dssp ECEEEECSCSSCCCC
T ss_pred EEEEEEcCcccCcCC
Confidence 999999988765543
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=5.5e-19 Score=137.22 Aligned_cols=83 Identities=19% Similarity=0.371 Sum_probs=77.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc-----
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL----- 88 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l----- 88 (279)
++.+.++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+++|
T Consensus 21 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~ 96 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDE---QELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPG 96 (114)
T ss_dssp CCCCTTEEEEESCCTTCCH---HHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTT
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcc
Confidence 45567889 9999999999 9999999999999999999998 999999999999999999999999999999
Q ss_pred ---CCceeEEeeccCC
Q 023632 89 ---AGAQVEVKKAEPK 101 (279)
Q Consensus 89 ---~g~~i~V~~a~~~ 101 (279)
.+++|+|++|+++
T Consensus 97 ~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 97 VSAPTEPLLCKFSGPS 112 (114)
T ss_dssp SCCCSSCBEEEECCCS
T ss_pred ccCCCCceeEEccCCC
Confidence 5788999999864
No 96
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=7.1e-20 Score=136.25 Aligned_cols=83 Identities=29% Similarity=0.560 Sum_probs=73.2
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|++++ |++||+.||+++|++++|+|++|
T Consensus 2 ~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a 77 (90)
T 2ki2_A 2 RNIYVGNLVYSATS---EQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEA 77 (90)
T ss_dssp EEEEEEEECTTSSH---HHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC
T ss_pred cEEEECCCCCCCCH---HHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEc
Confidence 578 9999999999 999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCCCC
Q 023632 99 EPKKPNLP 106 (279)
Q Consensus 99 ~~~~~~~~ 106 (279)
.++....+
T Consensus 78 ~~~~~~~~ 85 (90)
T 2ki2_A 78 NPKKSLEH 85 (90)
T ss_dssp --------
T ss_pred CCCCCCCC
Confidence 88655443
No 97
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.5e-19 Score=137.49 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=72.0
Q ss_pred CCCCcee-eeCCCC-CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC--CccCCc
Q 023632 16 QTTTQKM-TGLSLT-PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK--LELAGA 91 (279)
Q Consensus 16 ~~~~~~l-V~nLp~-~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng--~~l~g~ 91 (279)
..+.++| |.|||+ ++|| ++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.||. .+|+++
T Consensus 12 ~~p~~~l~V~nLp~~~~te---~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 82 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLR---YQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGK 82 (102)
T ss_dssp CCCCCEEEEESCCCSSSHH---HHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CCCCCEEEEeCCCCCcCCH---HHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCc
Confidence 4467889 999999 9999 999999999999999999876 47999999999999999998875 469999
Q ss_pred eeEEeeccCCCCCC
Q 023632 92 QVEVKKAEPKKPNL 105 (279)
Q Consensus 92 ~i~V~~a~~~~~~~ 105 (279)
+|+|++|++++...
T Consensus 83 ~l~V~~a~~~~~~~ 96 (102)
T 1x4d_A 83 PVRVHLSQKYKRIK 96 (102)
T ss_dssp ECEEEEECCCTTSS
T ss_pred EEEEEECCCCCCCC
Confidence 99999998765544
No 98
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=138.01 Aligned_cols=83 Identities=18% Similarity=0.254 Sum_probs=74.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCccCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAGA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln--g~~l~g~ 91 (279)
...+.++| |+|||+++|| ++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.|+ ..+|.++
T Consensus 27 ~~~ps~~LfVgNLp~~vte---~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTE---GEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp CSSCCSEEEEESCCTTCCH---HHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 44567889 9999999999 999999999999999999976 6899999999999999999886 4789999
Q ss_pred eeEEeeccCCCCCCC
Q 023632 92 QVEVKKAEPKKPNLP 106 (279)
Q Consensus 92 ~i~V~~a~~~~~~~~ 106 (279)
+|+|++|++++....
T Consensus 98 ~l~V~~a~~k~~~~~ 112 (119)
T 2ad9_A 98 PIYIQFSNHKELKTD 112 (119)
T ss_dssp CCEEEECSSSSCCCC
T ss_pred EEEEEEccCCCCCcc
Confidence 999999988766543
No 99
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=131.68 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=73.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC--Cc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA--GA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~--g~ 91 (279)
...+.++| |.|||+++++ ++|+++|++|++|++|+|+++ ++||||+|+++++|++||+.||+++|+ ++
T Consensus 13 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~ 83 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSL---AALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDR 83 (97)
T ss_dssp CCCCCSCEEEECCCSSCCH---HHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCc
Confidence 44566888 9999999999 999999999999999999865 679999999999999999999999999 99
Q ss_pred eeEEeeccCCCC
Q 023632 92 QVEVKKAEPKKP 103 (279)
Q Consensus 92 ~i~V~~a~~~~~ 103 (279)
+|+|++++++..
T Consensus 84 ~l~V~~a~~~~~ 95 (97)
T 1why_A 84 RLRVDFAKSGPS 95 (97)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999988643
No 100
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=129.92 Aligned_cols=81 Identities=17% Similarity=0.366 Sum_probs=73.6
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
......++| |.|||+++++ ++|+++|++||+|++|+|+++ ||||+|+++++|++||+.||+++|++++
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTN---QELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCH---HHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 345677889 9999999999 999999999999999999844 9999999999999999999999999999
Q ss_pred eEEeeccCCCCCC
Q 023632 93 VEVKKAEPKKPNL 105 (279)
Q Consensus 93 i~V~~a~~~~~~~ 105 (279)
|+|++++++....
T Consensus 74 l~V~~a~~~~~~~ 86 (92)
T 2dgt_A 74 MHVQLSTSRLRTA 86 (92)
T ss_dssp EEEEESSCCCSCC
T ss_pred EEEEEccCCCCCC
Confidence 9999998866544
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.4e-19 Score=136.75 Aligned_cols=84 Identities=21% Similarity=0.442 Sum_probs=77.2
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+...++| |.|||+++++ ++|+++|++||+|++|+|++++. ++++||||+|+++++|++||+.||+++|++++
T Consensus 24 ~~~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRD---PDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCH---HHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred cCCCCCCEEEEECCCCcCCH---HHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 355677889 9999999999 99999999999999999999853 48999999999999999999999999999999
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++|+++.
T Consensus 99 l~V~~a~~~~ 108 (109)
T 2err_A 99 IEVNNATARV 108 (109)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCc
Confidence 9999998753
No 102
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=132.25 Aligned_cols=77 Identities=21% Similarity=0.342 Sum_probs=72.0
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
++| |.|||+++|+ ++|+++|++||+|++|+|+++ +++||||+|+++++|++||+.||+++|++++|+|+++
T Consensus 1 ~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 72 (101)
T 2hvz_A 1 MKVYVGNLGTGAGK---GELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELS 72 (101)
T ss_dssp CEEEEECCCSSCSH---HHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEES
T ss_pred CEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEc
Confidence 468 9999999999 999999999999999999987 6899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 023632 99 EPKKPN 104 (279)
Q Consensus 99 ~~~~~~ 104 (279)
+++...
T Consensus 73 ~~~~~~ 78 (101)
T 2hvz_A 73 TGMPRR 78 (101)
T ss_dssp SSCCCS
T ss_pred cCCCCc
Confidence 887644
No 103
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.1e-19 Score=140.10 Aligned_cols=83 Identities=11% Similarity=0.112 Sum_probs=77.3
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.+.+.++| |.|||+++|| ++|+++|++|+.| ++|+|++|+ ++++++||||+|+++++|++||+. |+++|++++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITK---MDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp CCSCCCEEEEESCCTTSCH---HHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred CCCCccEEEEeCcCCcCCH---HHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 34556788 9999999999 9999999999999 899999998 999999999999999999999998 999999999
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++|.++.
T Consensus 86 i~v~~a~~~~ 95 (114)
T 2cpy_A 86 AFVHVVTLED 95 (114)
T ss_dssp EEEEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999998765
No 104
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=129.12 Aligned_cols=80 Identities=21% Similarity=0.377 Sum_probs=72.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
++.+.++| |.|||+++|+ ++|+++|++||+|++|+|+++ ||||+|+++++|++||+.||+++|++++|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTS---QELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp SSCCSCCEEEESCCTTCCH---HHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 45667888 9999999999 999999999999999999844 99999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|++++++.+..
T Consensus 74 ~v~~a~~~~~~~ 85 (90)
T 2dnp_A 74 NVELSTKGQKKS 85 (90)
T ss_dssp EEEESCCCCCCC
T ss_pred EEEECCCCCCCC
Confidence 999998865433
No 105
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-18 Score=129.67 Aligned_cols=83 Identities=18% Similarity=0.336 Sum_probs=72.9
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++++ ++|+++|++||+|++| +.++.+++ ||||+|+++++|++||+ ||+++|++++|+
T Consensus 5 ~~~~~~l~V~nl~~~~t~---~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~ 75 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDS---AQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLR 75 (94)
T ss_dssp CTTCCEEEEECCCTTCCH---HHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECC
T ss_pred cCCCCEEEEECCCCCCCH---HHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEE
Confidence 3456789 9999999999 9999999999999987 66666665 99999999999999999 999999999999
Q ss_pred EeeccCCCCCCCC
Q 023632 95 VKKAEPKKPNLPQ 107 (279)
Q Consensus 95 V~~a~~~~~~~~~ 107 (279)
|+++.+++...+.
T Consensus 76 V~~a~~~~~~~~~ 88 (94)
T 2e5g_A 76 VRPREQKEFQSPA 88 (94)
T ss_dssp CBCSCCSCCCCCC
T ss_pred EEECCcCCCCCCC
Confidence 9999876655443
No 106
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=140.04 Aligned_cols=80 Identities=29% Similarity=0.462 Sum_probs=75.7
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDD---KVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCCEEEEECCCTTCCH---HHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCcEEEEEeCCCCCCH---HHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4567889 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred Eeec
Q 023632 95 VKKA 98 (279)
Q Consensus 95 V~~a 98 (279)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9976
No 107
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=2.2e-18 Score=163.95 Aligned_cols=85 Identities=14% Similarity=0.318 Sum_probs=79.8
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||++||+ ++|+++|++||+|+.|.|++++.|+++++||||+|+++++|++||++||+++|++++|+|+
T Consensus 101 ~~~~lfV~nL~~~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTE---SKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34688 9999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCC
Q 023632 97 KAEPKKPNL 105 (279)
Q Consensus 97 ~a~~~~~~~ 105 (279)
+|+++....
T Consensus 178 ~a~~~~~~~ 186 (437)
T 3pgw_S 178 VERGRTVKG 186 (437)
T ss_pred EeCCCCCCC
Confidence 998765543
No 108
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=133.27 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=72.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC--CccCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK--LELAGA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng--~~l~g~ 91 (279)
...++++| |.|||++++| ++|+++|++||+|++|.|+++ |+||||+|+++++|++||+.||. .+|+++
T Consensus 11 ~~~p~~~l~V~nLp~~~te---~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVE---ADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp CCCCCSEEEEESCCSSCCH---HHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 34567889 9999999999 999999999999999998864 68999999999999999998854 569999
Q ss_pred eeEEeeccCCCCCC
Q 023632 92 QVEVKKAEPKKPNL 105 (279)
Q Consensus 92 ~i~V~~a~~~~~~~ 105 (279)
+|+|++++++....
T Consensus 82 ~l~V~~a~~~~~~~ 95 (104)
T 1wex_A 82 QAFFNYSTSKRITR 95 (104)
T ss_dssp BCEEEECSSSSCCC
T ss_pred EEEEEEccCccccC
Confidence 99999998866543
No 109
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=3.3e-19 Score=140.02 Aligned_cols=83 Identities=13% Similarity=0.161 Sum_probs=76.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
...+.++| |.|||+++|| ++|+++|++|++ |++|+|++++. +++++||||+|+++++|++||+ ||+++|++
T Consensus 13 ~~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g 87 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSI---EDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGH 87 (118)
T ss_dssp CBCCCCEEEEESCCTTCCH---HHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETT
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECC
Confidence 34566788 9999999999 999999999999 89999999986 9999999999999999999999 89999999
Q ss_pred ceeEEeeccCCC
Q 023632 91 AQVEVKKAEPKK 102 (279)
Q Consensus 91 ~~i~V~~a~~~~ 102 (279)
+.|+|.++.+++
T Consensus 88 r~i~V~~a~~~~ 99 (118)
T 2db1_A 88 RYIEVFKSHRTE 99 (118)
T ss_dssp EEEEEEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999987654
No 110
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=132.68 Aligned_cols=79 Identities=13% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc--cCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE--LAGA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~--l~g~ 91 (279)
...++++| |+|||+++|| ++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.||+.. |.++
T Consensus 17 ~~~ps~~l~V~NLp~~~te---~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr 87 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVE---ADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGH 87 (100)
T ss_dssp CCCCCSEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTE
T ss_pred cCCCCcEEEEeCCCCCCCH---HHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCc
Confidence 34567889 9999999999 999999999999999999853 6899999999999999999998765 7899
Q ss_pred eeEEeeccCCC
Q 023632 92 QVEVKKAEPKK 102 (279)
Q Consensus 92 ~i~V~~a~~~~ 102 (279)
+|.|+++++++
T Consensus 88 ~i~V~~S~~k~ 98 (100)
T 3r27_A 88 PAFVNYSTSQK 98 (100)
T ss_dssp EEEEEECSCSC
T ss_pred EEEEEeccccc
Confidence 99999998764
No 111
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.77 E-value=1.3e-18 Score=135.88 Aligned_cols=76 Identities=18% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce---
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ--- 92 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~--- 92 (279)
...++| |.|||++++| ++|+++|++||+|++|+|+++ +||||+|+++++|++||++||+++|++++
T Consensus 14 r~~~~l~V~nLp~~~t~---~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~ 83 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSW---QDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 83 (115)
T ss_dssp ---CCEEEEECCSSCCT---THHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCC
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeee
Confidence 345788 9999999999 999999999999999999866 79999999999999999999999999998
Q ss_pred --eEEeeccCCC
Q 023632 93 --VEVKKAEPKK 102 (279)
Q Consensus 93 --i~V~~a~~~~ 102 (279)
|+|+.+.++.
T Consensus 84 ~~i~v~~~~~~~ 95 (115)
T 3beg_B 84 AYIRVKVDGPRS 95 (115)
T ss_dssp CBCEEEECC---
T ss_pred EEEEeccCCCCC
Confidence 6666665543
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=3.8e-19 Score=143.43 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=76.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
+..+.++| |+|||+++|| ++|+++|++|++ |++|+|++|+. ++++|||||+|+++++|++||+ ||+++|++
T Consensus 40 ~~~~~~~lfVgnLp~~~te---~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g 114 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSV---EDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGH 114 (136)
T ss_dssp SCCTTCEEEEESCCTTCCH---HHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSS
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECC
Confidence 34556788 9999999999 999999999999 89999999987 9999999999999999999999 89999999
Q ss_pred ceeEEeeccCCC
Q 023632 91 AQVEVKKAEPKK 102 (279)
Q Consensus 91 ~~i~V~~a~~~~ 102 (279)
++|+|.++.+++
T Consensus 115 r~i~V~~a~~~e 126 (136)
T 2hgl_A 115 RYIEVFKSHRTE 126 (136)
T ss_dssp SEEEEEECCHHH
T ss_pred EEEEEEECChHH
Confidence 999999987543
No 113
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=9.6e-20 Score=138.52 Aligned_cols=84 Identities=18% Similarity=0.293 Sum_probs=76.5
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++++ ++|+++|++|++|++ .|+.++.++++++||||+|+++++|++||+ ||+++|++++|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~ 88 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSV---AELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIK 88 (101)
T ss_dssp CSCSEEEEEECCCTTSCH---HHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEE
Confidence 3456788 9999999999 999999999999988 677787889999999999999999999999 999999999999
Q ss_pred EeeccCCCCC
Q 023632 95 VKKAEPKKPN 104 (279)
Q Consensus 95 V~~a~~~~~~ 104 (279)
|++|++++.+
T Consensus 89 V~~a~~~~~~ 98 (101)
T 1fj7_A 89 LEKPKGRDGT 98 (101)
T ss_dssp EECCSCCCCS
T ss_pred EEEcCCCCCC
Confidence 9999876544
No 114
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.76 E-value=1.6e-18 Score=128.68 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=68.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
.+..| |+||++.+|| ++|+++|.+||+|++++|+. +||||||+|.++++|++||+.||+++|.+++|+|+
T Consensus 6 ~~~wL~VgNL~~~~te---~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDG---PTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCCEEEEECCCTTCCC---HHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred ccceEEEeCCCccCCH---HHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 46678 9999999999 99999999999999999975 58999999999999999999999999999999999
Q ss_pred ecc
Q 023632 97 KAE 99 (279)
Q Consensus 97 ~a~ 99 (279)
+|.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 984
No 115
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-18 Score=132.15 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=73.3
Q ss_pred hcCCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 12 FINRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 12 ~~~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
........++| |.|||+++++ ++|+++|++||+|++|+|+ ++++||||+|++.++|++||+.||+++|++
T Consensus 20 ~~~~~~~~~~l~V~nlp~~~~~---~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 90 (101)
T 2la4_A 20 IRSAPPRVTTAYIGNIPHFATE---ADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQG 90 (101)
T ss_dssp HTTSCSSCCEEEEESCCTTCCH---HHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred hhcCCCCCCEEEEcCCCcccCH---HHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 33445567889 9999999999 9999999999999999998 357899999999999999999999999999
Q ss_pred ceeEEeeccCC
Q 023632 91 AQVEVKKAEPK 101 (279)
Q Consensus 91 ~~i~V~~a~~~ 101 (279)
++|+|++|+++
T Consensus 91 ~~l~V~~a~~~ 101 (101)
T 2la4_A 91 RNLRTGWGKER 101 (101)
T ss_dssp EECCCCBCCCC
T ss_pred eEEEEEeccCC
Confidence 99999999864
No 116
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=131.01 Aligned_cols=82 Identities=26% Similarity=0.417 Sum_probs=74.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|||+++++ ++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l 81 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITE---EEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQL 81 (99)
T ss_dssp CCCCTTEEEEESCCTTCCH---HHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCH---HHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceE
Confidence 34566889 9999999999 999999999999999999855 6899999999999999999999999999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|++++++....
T Consensus 82 ~v~~a~~~~~~~ 93 (99)
T 2cpj_A 82 RVRFACHSASLT 93 (99)
T ss_dssp EEEESSCCSCCC
T ss_pred EEEEcCCCCCCC
Confidence 999998865543
No 117
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=130.69 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=72.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+....++| |.|||+++++ ++|+++|++||+|+ ++|+.+ ++++||||+|+++++|++||+.||+++|++++|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~---~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 86 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARV---SDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTL 86 (97)
T ss_dssp SSCCCCEEEEECCCTTCCH---HHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCCCEEEEeCCCCcCcH---HHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 34557888 9999999999 99999999999997 677754 578999999999999999999999999999999
Q ss_pred EEeeccCCCC
Q 023632 94 EVKKAEPKKP 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|++++++++
T Consensus 87 ~V~~a~~~~~ 96 (97)
T 2e5j_A 87 RVALARQQRD 96 (97)
T ss_dssp EEEECCCCCC
T ss_pred EEEEcCCCCC
Confidence 9999988654
No 118
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.2e-19 Score=141.95 Aligned_cols=83 Identities=16% Similarity=0.194 Sum_probs=76.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++|| ++|+++|++|+.|+++.++.++.++++++||||+|+++++|++||+ ||+++|++++|+
T Consensus 22 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 97 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAEN---KHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQ 97 (124)
T ss_dssp CCCCCEEEEECCCTTCCH---HHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 4456788 9999999999 9999999999999997777777899999999999999999999999 899999999999
Q ss_pred EeeccCCC
Q 023632 95 VKKAEPKK 102 (279)
Q Consensus 95 V~~a~~~~ 102 (279)
|.+|.++.
T Consensus 98 V~~a~~~~ 105 (124)
T 1wel_A 98 VHPITKKG 105 (124)
T ss_dssp EEEECHHH
T ss_pred EEECCHHH
Confidence 99997654
No 119
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=135.82 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=73.1
Q ss_pred CCCCCcee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC--CCccCC
Q 023632 15 RQTTTQKM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN--KLELAG 90 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln--g~~l~g 90 (279)
+..+.++| |+|||++ ++| ++|+++|++||+|++|+|+++ |+||||+|+++++|++||+.|| ..+|++
T Consensus 21 ~~~p~~~l~V~NLp~~~~te---~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSD---SAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCS---HHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred cCCCCCEEEEeCCCCccCCH---HHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45567889 9999998 999 999999999999999999743 7899999999999999999875 567999
Q ss_pred ceeEEeeccCCCCCCC
Q 023632 91 AQVEVKKAEPKKPNLP 106 (279)
Q Consensus 91 ~~i~V~~a~~~~~~~~ 106 (279)
++|+|++|++++....
T Consensus 92 r~l~V~~a~~~~~~~~ 107 (112)
T 1x4f_A 92 RCVKVDLSEKYKKLVS 107 (112)
T ss_dssp SCCEEEEECSCSSSSC
T ss_pred EEEEEEECcccccccc
Confidence 9999999987765543
No 120
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.7e-19 Score=137.56 Aligned_cols=78 Identities=24% Similarity=0.376 Sum_probs=72.3
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||+++|| ++|+++|++| .|++|+|++|+. ++++|||||+|+++++|++|| .||+++|+++.|+|.
T Consensus 15 ~~~~v~V~nLp~~~te---~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 88 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAME---NDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVS 88 (109)
T ss_dssp HHHEEEEECCCSSCCH---HHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 34688 9999999999 9999999999 999999999975 999999999999999999999 679999999999999
Q ss_pred eccCC
Q 023632 97 KAEPK 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
.+.++
T Consensus 89 ~a~~~ 93 (109)
T 2dnn_A 89 PATER 93 (109)
T ss_dssp ECCHH
T ss_pred ECCcc
Confidence 88754
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.2e-20 Score=144.20 Aligned_cols=86 Identities=17% Similarity=0.263 Sum_probs=80.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEE--------EEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE--------HQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~--------v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
++.+.++| |.|||+++++ ++|+++|++|++|++ |+|++++.++++++||||+|+++++|++||+.||+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 79 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTI---ESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 79 (116)
Confidence 34567888 9999999999 999999999999998 99999999999999999999999999999999999
Q ss_pred CccCCceeEEeeccCCCC
Q 023632 86 LELAGAQVEVKKAEPKKP 103 (279)
Q Consensus 86 ~~l~g~~i~V~~a~~~~~ 103 (279)
++|++++|+|++|+++..
T Consensus 80 ~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 80 KEFSGNPIKVSFATRRAD 97 (116)
Confidence 999999999999987654
No 122
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.76 E-value=1.5e-18 Score=133.34 Aligned_cols=83 Identities=10% Similarity=0.186 Sum_probs=75.0
Q ss_pred CCCCCcee-eeCCCCCC------CcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 15 RQTTTQKM-TGLSLTPV------TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~------te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
.+...++| |.|||+++ ++ ++|+++|++||+|++|.|+ +.++++++||||+|+++++|++||+.||+++
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~---~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~ 85 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLK---NVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYK 85 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHH---HHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEE
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHH---HHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcc
Confidence 34446788 99999999 67 8999999999999999988 4688999999999999999999999999999
Q ss_pred cCCc-eeEEeeccCCC
Q 023632 88 LAGA-QVEVKKAEPKK 102 (279)
Q Consensus 88 l~g~-~i~V~~a~~~~ 102 (279)
|+++ +|+|++|...+
T Consensus 86 ~~g~~~l~V~~a~~~~ 101 (105)
T 2nlw_A 86 LDKQHTFRVNLFTDFD 101 (105)
T ss_dssp CSTTCEEEEECSCCCC
T ss_pred cCCCceEEEEEcchHh
Confidence 9998 99999997654
No 123
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=6.1e-19 Score=134.29 Aligned_cols=85 Identities=24% Similarity=0.484 Sum_probs=76.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.+...++| |.|||+++++ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+ |+++|++++|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l 78 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDE---TEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKL 78 (102)
T ss_dssp CEEEEEEEEEECCCTTCCH---HHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEE
Confidence 34556889 9999999999 9999999999999999999998 99999999999999999999999 8899999999
Q ss_pred EEeeccCCCCCC
Q 023632 94 EVKKAEPKKPNL 105 (279)
Q Consensus 94 ~V~~a~~~~~~~ 105 (279)
+|.++.++....
T Consensus 79 ~v~~a~~~~~~~ 90 (102)
T 2xs2_A 79 KLGPAIRKQNLS 90 (102)
T ss_dssp EEEEEEECC---
T ss_pred EEEECCcCcchh
Confidence 999998776543
No 124
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=4.9e-18 Score=144.80 Aligned_cols=88 Identities=24% Similarity=0.474 Sum_probs=81.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 123 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V 199 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSD---DDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRV 199 (216)
T ss_dssp TTSCEEEEECCCTTCCH---HHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCcEEEEeCCCCcCCH---HHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEE
Confidence 456788 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCC
Q 023632 96 KKAEPKKPNLPQ 107 (279)
Q Consensus 96 ~~a~~~~~~~~~ 107 (279)
++++++....+.
T Consensus 200 ~~a~~~~~~~~~ 211 (216)
T 2qfj_A 200 GKAVTPPMPLLT 211 (216)
T ss_dssp EECSSCSSTTSC
T ss_pred EEecCCCCCCCC
Confidence 999987554443
No 125
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.7e-18 Score=136.06 Aligned_cols=86 Identities=13% Similarity=0.183 Sum_probs=73.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHH-HHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALD-EFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~-~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+..+.++| |.|||+++++++|. +|.++|++||+|++|.|++ +.++|+||||+|++.++|++||+.||+.+|.+++
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 34556789 99999999993332 2457999999999998753 6788999999999999999999999999999999
Q ss_pred eEEeeccCCCC
Q 023632 93 VEVKKAEPKKP 103 (279)
Q Consensus 93 i~V~~a~~~~~ 103 (279)
|+|++|+++..
T Consensus 102 l~V~~a~~~~~ 112 (127)
T 2a3j_A 102 LVITFSETPQS 112 (127)
T ss_dssp CEEEECCCCCH
T ss_pred EEEEEccCcch
Confidence 99999987654
No 126
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=5.6e-19 Score=136.13 Aligned_cols=83 Identities=16% Similarity=0.199 Sum_probs=76.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCC---eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
+....++| |.|||+++|+ ++|+++|++|+. |++|+|++|+. ++++|||||+|+++++|++||+ +|++.|++
T Consensus 7 ~~~~~~~l~V~nLp~~~te---~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTM---EDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ 81 (107)
T ss_dssp CCSSCCEEEEECCCSSCCS---HHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS
T ss_pred CCCCccEEEEeCCCCCCCH---HHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC
Confidence 44567888 9999999999 999999999998 89999999987 9999999999999999999999 89999999
Q ss_pred ceeEEeeccCCC
Q 023632 91 AQVEVKKAEPKK 102 (279)
Q Consensus 91 ~~i~V~~a~~~~ 102 (279)
+.|+|.++.+++
T Consensus 82 r~i~V~~a~~~~ 93 (107)
T 2lmi_A 82 RYVEVYEINNED 93 (107)
T ss_dssp SCCCCEECCHHH
T ss_pred eEEEEEECCHHH
Confidence 999999988654
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2e-18 Score=129.25 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=70.5
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCC-eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC-CccCCce
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGD-VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELAGAQ 92 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~-V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng-~~l~g~~ 92 (279)
....++| |.|||+++|| ++|+++|++|++ |+.+.|+ +++||||+|+++++|++||+.||+ ++|++++
T Consensus 5 ~~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTA---DDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCCEEEECCCTTCCH---HHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCcEEEEeCCCCCCCH---HHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 4567888 9999999999 999999999999 5655553 478999999999999999999999 9999999
Q ss_pred eEEeeccCCCCCC
Q 023632 93 VEVKKAEPKKPNL 105 (279)
Q Consensus 93 i~V~~a~~~~~~~ 105 (279)
|+|++++++..+.
T Consensus 75 l~v~~a~~~~~~~ 87 (93)
T 2cqh_A 75 MEVDYSVSKKLRS 87 (93)
T ss_dssp CEEEECCCCCCCC
T ss_pred EEEEEccCccccC
Confidence 9999998876544
No 128
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5e-19 Score=143.22 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=73.6
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++|| ++|+++|++|+ |++|+|++|++ +++++||||+|+++++|++|| ++|+++|+++.|+
T Consensus 43 ~~~~~~lfV~nLp~~~te---~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATE---NDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCH---HHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 3456788 9999999999 99999999999 67999999985 999999999999999999999 7799999999999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|.++.+++.
T Consensus 117 V~~a~~~~~ 125 (139)
T 2hgn_A 117 LFLNSTTGA 125 (139)
T ss_dssp CEECCCSCC
T ss_pred EEECCCCCC
Confidence 999876543
No 129
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.75 E-value=1.9e-18 Score=133.49 Aligned_cols=78 Identities=21% Similarity=0.451 Sum_probs=70.8
Q ss_pred CCCCcee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 16 QTTTQKM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
....++| |.|||++ +++ ++|+++|++||+|++|+| +++||||+|+++++|++||+.||+++|++++|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~---~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 92 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKK---SDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTL 92 (110)
T ss_dssp TTCSSEEEECSCCCSSCCH---HHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCcccCCH---HHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445788 9999999 999 999999999999999998 47899999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|++++++++.
T Consensus 93 ~V~~a~~~~~~ 103 (110)
T 1wf1_A 93 DINMAGEPKPD 103 (110)
T ss_dssp CEEESCCCCSC
T ss_pred EEEECCCCCCC
Confidence 99999865543
No 130
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.9e-18 Score=124.32 Aligned_cols=77 Identities=27% Similarity=0.460 Sum_probs=71.1
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc-CCCccCCc
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGA 91 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l-ng~~l~g~ 91 (279)
+.+.+.++| |.|||+++++ ++|+++|++||+|++|+|+++ ++||||+|+++++|++||+.| |+++|+++
T Consensus 7 ~~~~~~~~l~V~~l~~~~t~---~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 7 GEDKTITTLYVGGLGDTITE---TDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CSCSSCCCEEEECCTTTSCH---HHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCccEEEEcCCCCCCCH---HHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 345677889 9999999999 999999999999999999864 789999999999999999998 99999999
Q ss_pred eeEEeecc
Q 023632 92 QVEVKKAE 99 (279)
Q Consensus 92 ~i~V~~a~ 99 (279)
+|+|++|+
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999984
No 131
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=3.9e-18 Score=143.30 Aligned_cols=88 Identities=30% Similarity=0.546 Sum_probs=75.1
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++|+ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+. ++++|++++|+|
T Consensus 102 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v 177 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEE---HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEV 177 (196)
T ss_dssp -CCSEEEEECCTTTCCH---HHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEE
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEE
Confidence 345788 9999999999 99999999999999999999999999999999999999999999998 799999999999
Q ss_pred eeccCCCCCCCCC
Q 023632 96 KKAEPKKPNLPQP 108 (279)
Q Consensus 96 ~~a~~~~~~~~~~ 108 (279)
++|.++.+.....
T Consensus 178 ~~a~~k~~~~~~~ 190 (196)
T 1l3k_A 178 RKALSKQEMASAS 190 (196)
T ss_dssp EECC---------
T ss_pred EecCChhHhcccc
Confidence 9999987765443
No 132
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=7.6e-19 Score=126.11 Aligned_cols=74 Identities=30% Similarity=0.547 Sum_probs=70.8
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
+| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+. ++++|++++|+|++|
T Consensus 1 ~l~v~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPE---EKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCH---HHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 47 9999999999 99999999999999999999999999999999999999999999997 889999999999875
No 133
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=126.74 Aligned_cols=79 Identities=18% Similarity=0.333 Sum_probs=71.4
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcC--CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQF--GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~--G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
...+.++| |.|||+++++ ++|+++|++| +.|++|+|+ ++||||+|+++++|++||+.||+++|+++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~---~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSE---EMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CSSCCCEEEEESCCTTCCH---HHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred ccCCcCEEEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34567888 9999999999 9999999999 999999875 56999999999999999999999999999
Q ss_pred eeEEeeccCCCCC
Q 023632 92 QVEVKKAEPKKPN 104 (279)
Q Consensus 92 ~i~V~~a~~~~~~ 104 (279)
+|+|++++++...
T Consensus 80 ~l~v~~a~~~~~~ 92 (99)
T 2cpd_A 80 PIEVTLAKPVDKD 92 (99)
T ss_dssp EEEEECCCCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 134
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.74 E-value=3.7e-18 Score=143.42 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=78.3
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|.|+.++ ++++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 86 ~~~~~l~V~nLp~~~te---~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V 161 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSD---ADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 161 (177)
T ss_dssp TTCEEEEEECCCSCCCH---HHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEE
Confidence 346788 9999999999 9999999999999999999998 9999999999999999999999999999999999999
Q ss_pred eeccCCCCC
Q 023632 96 KKAEPKKPN 104 (279)
Q Consensus 96 ~~a~~~~~~ 104 (279)
++|.+....
T Consensus 162 ~~a~~~~~~ 170 (177)
T 2f3j_A 162 QLVASQIDL 170 (177)
T ss_dssp EEESSGGGG
T ss_pred EEecCCCCC
Confidence 999875443
No 135
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.1e-18 Score=128.52 Aligned_cols=80 Identities=19% Similarity=0.334 Sum_probs=70.4
Q ss_pred CCCCCcee-eeCCCC-CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLT-PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~-~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
+..+.++| |.|||+ ++++ ++|+++|++||+|++|+|. ++||||+|+++++|++||+.||+++|.+++
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~---~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSK---EDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp ---CCEEEEEESSTTSCCCH---HHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred cCCCCCEEEEeCCCcccCCH---HHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34567889 999998 9999 9999999999999999984 679999999999999999999999999999
Q ss_pred eEEeeccCCCCCC
Q 023632 93 VEVKKAEPKKPNL 105 (279)
Q Consensus 93 i~V~~a~~~~~~~ 105 (279)
|+|++++++....
T Consensus 75 l~V~~a~~~~~~~ 87 (96)
T 2kvi_A 75 LILEVSSSNARPQ 87 (96)
T ss_dssp BCEEEEECCCC--
T ss_pred EEEEEcCcCCCCC
Confidence 9999998765433
No 136
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.74 E-value=5.2e-18 Score=131.16 Aligned_cols=79 Identities=19% Similarity=0.365 Sum_probs=71.8
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.+...++| |.|||+++++ ++|+++|++||+|++|+|+ ++||||+|+++++|++||+.||+.+|++++|
T Consensus 27 ~~~~~~~l~V~nLp~~~t~---~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQE---SELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPL 95 (108)
T ss_dssp -CCSCSEEEECSSCTTCCH---HHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCEEEEECCCCCCCH---HHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 45677889 9999999999 9999999999999999998 6899999999999999999999999999999
Q ss_pred EEeeccCCCCC
Q 023632 94 EVKKAEPKKPN 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|++++++..+
T Consensus 96 ~V~~a~~~~~r 106 (108)
T 2jvo_A 96 EVVYSKLPAKR 106 (108)
T ss_dssp EEESCSCCC--
T ss_pred EEEEecCCCCC
Confidence 99999876543
No 137
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=127.37 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=73.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v-~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.....++| |.|||+++++ ++|+++|++||+|++| .|++++.+++ |||+|+++++|++||+.||+++|++++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~ 83 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQW---EVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFT 83 (96)
T ss_dssp CCCSCCCEEEEEECSSSCH---HHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCCCEEEEEcCCCCCCH---HHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34456788 9999999999 9999999999999999 5888876543 999999999999999999999999999
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++|++++
T Consensus 84 l~V~~a~~~~ 93 (96)
T 2e44_A 84 LKVAYIPDEM 93 (96)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEcCccc
Confidence 9999998873
No 138
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=1.6e-18 Score=137.93 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=73.4
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeE--EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQ--EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~--~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+.++| |+|||+++|| ++|+++|++| .|+ +|+|++|+. ++++|||||+|+++++|++||+. ++++|+++.
T Consensus 39 ~~~~~~lfVgnLp~~~te---~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTK---EEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCH---HHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBC
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEE
Confidence 3456788 9999999999 9999999999 777 899999986 99999999999999999999997 679999999
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|.++.+++
T Consensus 113 I~V~~a~~~e 122 (126)
T 2hgm_A 113 IEVFKSSQEE 122 (126)
T ss_dssp CCCEEECHHH
T ss_pred EEEEECCHHH
Confidence 9999987643
No 139
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-18 Score=137.33 Aligned_cols=82 Identities=18% Similarity=0.192 Sum_probs=74.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCe----EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDV----QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V----~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
..+.++| |.|||+++|| ++|+++|++|++| ++|+|++|+ +++++|||||+|+++++|++||+. |+++|.+
T Consensus 20 ~~~~~~v~V~nLp~~~te---~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATA---EEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCH---HHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 3456788 9999999999 9999999999976 689999994 899999999999999999999998 9999999
Q ss_pred ceeEEeeccCCC
Q 023632 91 AQVEVKKAEPKK 102 (279)
Q Consensus 91 ~~i~V~~a~~~~ 102 (279)
+.|+|..+.+++
T Consensus 95 R~i~V~~a~~~e 106 (123)
T 2dha_A 95 RYIELFRSTAAE 106 (123)
T ss_dssp CEECCEEECHHH
T ss_pred eEEEEEECCHHH
Confidence 999999887543
No 140
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.2e-18 Score=125.02 Aligned_cols=72 Identities=11% Similarity=0.258 Sum_probs=66.9
Q ss_pred cee-eeCCCCCC------CcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc-
Q 023632 20 QKM-TGLSLTPV------TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA- 91 (279)
Q Consensus 20 ~~l-V~nLp~~~------te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~- 91 (279)
++| |.|||+++ ++ ++|+++|++||+|++|+|+ +.++++++||||+|+++++|++||+.||+.+|+++
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~---~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLK---NVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHH---HHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CEEEEeCCCCCcHHHHHHHH---HHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 678 99999999 77 9999999999999999988 45889999999999999999999999999999999
Q ss_pred eeEEe
Q 023632 92 QVEVK 96 (279)
Q Consensus 92 ~i~V~ 96 (279)
+|+|.
T Consensus 77 ~l~V~ 81 (81)
T 2krb_A 77 TFRVN 81 (81)
T ss_dssp CCCCC
T ss_pred eEEeC
Confidence 88873
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=124.30 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=72.0
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...+.++| |.|| ++++ ++|+++|++||+|++|+|. ++++||||+|+++++|++||+.||+++|++++|
T Consensus 11 ~~~~~~~l~V~n~--~~t~---~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 79 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTP---TLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQL 79 (97)
T ss_dssp CCCCCSEEEEECS--SCCH---HHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCEEEEcCC--CCCH---HHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34566788 9996 8999 9999999999999999985 457899999999999999999999999999999
Q ss_pred EEeeccCCCCCCC
Q 023632 94 EVKKAEPKKPNLP 106 (279)
Q Consensus 94 ~V~~a~~~~~~~~ 106 (279)
+|++++++....+
T Consensus 80 ~v~~a~~~~~~~~ 92 (97)
T 1x5p_A 80 KVNIARKQPMLDS 92 (97)
T ss_dssp EEECCSSCCCCCS
T ss_pred EEEECCCCCCCCC
Confidence 9999988765543
No 142
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=3.8e-18 Score=128.44 Aligned_cols=83 Identities=16% Similarity=0.316 Sum_probs=74.2
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHH----HHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~----~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~ 89 (279)
+..+.++| |.|||+++++ ++|+ ++|++||+|++|+|++ ++++++||||+|+++++|++||+.||++.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~---~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 77 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKK---DELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFY 77 (97)
T ss_dssp --CCCSEEEEESCCTTSCH---HHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC
Confidence 34567888 9999999999 8888 9999999999999873 5678899999999999999999999999999
Q ss_pred CceeEEeeccCCCC
Q 023632 90 GAQVEVKKAEPKKP 103 (279)
Q Consensus 90 g~~i~V~~a~~~~~ 103 (279)
+++|+|++++++..
T Consensus 78 g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 78 DKPMRIQYAKTDSD 91 (97)
T ss_dssp TEECEEEECSSCCT
T ss_pred CcEEEEEEccCCCc
Confidence 99999999988654
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.73 E-value=1.2e-17 Score=129.84 Aligned_cols=82 Identities=10% Similarity=0.226 Sum_probs=74.5
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++++ ++|+++|++||.|++|.|+++. ++++||||+|.++++|++||+.||+..|+++.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~---~~l~~~F~~~G~v~~v~i~~~~---~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 78 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITA---EEMYDIFGKYGPIRQIRVGNTP---ETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLV 78 (115)
T ss_dssp TTCCSEEEEESCCTTCCH---HHHHHHHHTTSCEEEEEEECST---TTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCeEEEEEeeCC---CCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456788 9999999999 9999999999999999999764 4589999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|++++++..
T Consensus 79 v~~a~~~~~ 87 (115)
T 3lqv_A 79 VLYYNANRA 87 (115)
T ss_dssp EEECCHHHH
T ss_pred EEEecCChh
Confidence 999987543
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-18 Score=128.55 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=72.8
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
..+.+.++| |.|||+++++ ++|+++|++|++|+.| +.++++++||||+|+++++|++||+.||+++|++++
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~---~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITE---DELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp STTTGGGEEEEESCCSSCCH---HHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCH---HHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 345567889 9999999999 9999999999877655 347889999999999999999999999999999999
Q ss_pred eEEeeccCCCC
Q 023632 93 VEVKKAEPKKP 103 (279)
Q Consensus 93 i~V~~a~~~~~ 103 (279)
|+|++++++..
T Consensus 83 l~v~~a~~~~~ 93 (96)
T 1fjc_A 83 VSLYYTGEKGG 93 (96)
T ss_dssp EEEEECSSSCC
T ss_pred EEEEEcCCCCC
Confidence 99999987644
No 145
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1e-17 Score=130.11 Aligned_cols=79 Identities=8% Similarity=-0.000 Sum_probs=71.4
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
+...++| |.|||+++++ ++|+++|++||+|++|.|++ +++||||+|+++++|++||+.||+++|++++|+
T Consensus 7 ~~~~~~l~V~nLp~~~te---~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 77 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLA---AEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLY 77 (111)
T ss_dssp SEEEEEEEEESCCTTCCH---HHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEE
Confidence 3345788 9999999999 99999999999999999874 468999999999999999999999999999999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|++|+....
T Consensus 78 V~~a~~~~~ 86 (111)
T 1whx_A 78 LEWAPIGVF 86 (111)
T ss_dssp EEEEETTTT
T ss_pred EEECCCCcc
Confidence 999976543
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.73 E-value=1.4e-17 Score=135.55 Aligned_cols=80 Identities=20% Similarity=0.323 Sum_probs=74.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
.....++| |.|||+++++ ++|+++|++||+|++|+|+++ +++||||+|+++++|++||+.||+++|++++|
T Consensus 69 ~~~~~~~l~V~nl~~~~t~---~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 140 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNK---TELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRV 140 (150)
T ss_dssp SSTTSCEEEEESCCSCCSC---HHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 34566889 9999999999 999999999999999999877 58999999999999999999999999999999
Q ss_pred EEeeccCCC
Q 023632 94 EVKKAEPKK 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|+++++++
T Consensus 141 ~v~~a~~~~ 149 (150)
T 2i2y_A 141 RVELSNGEK 149 (150)
T ss_dssp EEEECCCCC
T ss_pred EEEEcCCCC
Confidence 999998764
No 147
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=2e-17 Score=125.23 Aligned_cols=77 Identities=19% Similarity=0.370 Sum_probs=70.5
Q ss_pred CCCCCcee-eeCCCC-CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLT-PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~-~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
...+.++| |.|||+ ++++ ++|+++|++||+|++|+|. ++||||+|+++++|++||+.||+..|++++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~---~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 86 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSK---EDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKK 86 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCH---HHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEE
T ss_pred CCCCCCEEEEeCCCcccCCH---HHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 45667889 999998 9999 9999999999999999983 689999999999999999999999999999
Q ss_pred eEEeeccCCC
Q 023632 93 VEVKKAEPKK 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++++++.
T Consensus 87 l~V~~a~~~~ 96 (97)
T 2xnq_A 87 LILEVSSSNA 96 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEecCCCC
Confidence 9999997653
No 148
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.8e-17 Score=142.44 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=77.3
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+.++| |+|||+++|| ++|+++|++||+|++|+|++|+.|+++++||||+|+++++|++||+.+|...+.++.|+|
T Consensus 13 ~p~~tlfVgnLp~~~te---~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~ 89 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTE---AMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRI 89 (213)
T ss_dssp --CCEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccc
Confidence 456789 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 023632 96 KKAEPKK 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
.++....
T Consensus 90 ~~~~~~~ 96 (213)
T 4f02_A 90 MWSQRDP 96 (213)
T ss_dssp EECCCCT
T ss_pred ccccccc
Confidence 9887544
No 149
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.5e-17 Score=129.97 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=71.6
Q ss_pred CCCCCCcee-e--eCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc--
Q 023632 14 NRQTTTQKM-T--GLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL-- 88 (279)
Q Consensus 14 ~~~~~~~~l-V--~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l-- 88 (279)
....++++| | .||+++++| ++|+++|++||+|++|.|+.+ |+||||+|+++++|++||+.||+++|
T Consensus 20 ~~~~pt~~L~V~Ng~L~~~~te---~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 20 TVSYATQSLVVANGGLGNGVSR---NQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp CCSSCCSEEEEETCTGGGTCCH---HHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCCCCEEEEECCCCCCCCCH---HHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 345567888 9 669999999 999999999999999988643 68999999999999999999999988
Q ss_pred ---CCceeEEeeccCCCCCC
Q 023632 89 ---AGAQVEVKKAEPKKPNL 105 (279)
Q Consensus 89 ---~g~~i~V~~a~~~~~~~ 105 (279)
.+++|.|.+++......
T Consensus 91 ~lg~g~~l~v~~a~~~p~~~ 110 (114)
T 2cq2_A 91 DLGQKITLYLNFVEKVQWSG 110 (114)
T ss_dssp TTSCEEECEEEEESCCCCSS
T ss_pred ccCCCcEEEEEecccCcccC
Confidence 68899999997654433
No 150
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.72 E-value=2.8e-17 Score=134.01 Aligned_cols=82 Identities=22% Similarity=0.475 Sum_probs=77.8
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.||+..|.+++|+|++
T Consensus 2 ~~~l~v~nlp~~~~~---~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~ 78 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQ---EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78 (167)
T ss_dssp CSEEEEESCCTTCCH---HHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred cceEEEcCCCCCCCH---HHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEe
Confidence 4788 9999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023632 98 AEPKKP 103 (279)
Q Consensus 98 a~~~~~ 103 (279)
+.++..
T Consensus 79 ~~~~~~ 84 (167)
T 1fxl_A 79 ARPSSA 84 (167)
T ss_dssp CCCCCG
T ss_pred cCCCcc
Confidence 987543
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=3e-17 Score=133.72 Aligned_cols=82 Identities=21% Similarity=0.402 Sum_probs=77.6
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+.+|++++|+
T Consensus 84 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 84 SDDTFNLFVGDLNVNVDD---ETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CTTCEEEEEESCCTTCCH---HHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCceEEECCCCCCCCH---HHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 4456788 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccC
Q 023632 95 VKKAEP 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|++|++
T Consensus 161 v~~a~~ 166 (166)
T 3md3_A 161 INWAAK 166 (166)
T ss_dssp EEESCC
T ss_pred EEecCC
Confidence 999863
No 152
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.72 E-value=2.4e-17 Score=134.88 Aligned_cols=83 Identities=22% Similarity=0.377 Sum_probs=78.5
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+.++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||++.|.+++|+|+
T Consensus 2 ~~~~l~v~nlp~~~~~---~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~ 78 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTD---RELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVS 78 (168)
T ss_dssp CCSEEEEECCCTTCCH---HHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CccEEEEeCCCCCCCH---HHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEE
Confidence 35788 9999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCC
Q 023632 97 KAEPKKP 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
++.++..
T Consensus 79 ~~~~~~~ 85 (168)
T 1b7f_A 79 YARPGGE 85 (168)
T ss_dssp ECCCCSS
T ss_pred ecCCCcc
Confidence 9987654
No 153
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=3.8e-17 Score=135.26 Aligned_cols=79 Identities=10% Similarity=0.157 Sum_probs=70.8
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC--ceeE
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVE 94 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g--~~i~ 94 (279)
+..+| |.||++++|| ++|+++|++||+|++|+|+.++ +++||||+|+++++|++||+.||+.+|.+ ++|+
T Consensus 45 ~vl~l~VgNL~~~vte---d~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTL---DVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CEEEEEECSCCSCCCH---HHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred ceEEEEEeCcCCCCCH---HHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 34567 9999999999 9999999999999999987542 57899999999999999999999999966 9999
Q ss_pred EeeccCCCC
Q 023632 95 VKKAEPKKP 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|++++++..
T Consensus 118 V~~Ak~~~l 126 (164)
T 1sjr_A 118 IDFSKLTSL 126 (164)
T ss_dssp EEECSSSSC
T ss_pred EEEecCCcc
Confidence 999998643
No 154
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.71 E-value=2.5e-18 Score=138.89 Aligned_cols=88 Identities=23% Similarity=0.311 Sum_probs=73.5
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEE--E---eecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQ--I---MRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~--i---~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~ 89 (279)
..++++| |.|||++||+ ++|+++|++||.|+.|. + ++.+.++++++||||+|.+.++|++||+.||+++|.
T Consensus 42 ~~~~~~l~V~nLp~~~te---~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQE---KDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCH---HHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCH---HHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 4567889 9999999999 99999999999987641 1 111247889999999999999999999999999999
Q ss_pred CceeEEeeccCCCCCCC
Q 023632 90 GAQVEVKKAEPKKPNLP 106 (279)
Q Consensus 90 g~~i~V~~a~~~~~~~~ 106 (279)
+++|+|++|+++.++..
T Consensus 119 g~~l~V~~a~~~~~~~~ 135 (143)
T 3egn_A 119 GKPMVVQFARSARPKQD 135 (143)
T ss_dssp TEECEEEECCCSCC---
T ss_pred CcEEEEEECCCCCCccC
Confidence 99999999987655443
No 155
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.71 E-value=2.1e-17 Score=122.59 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=69.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||++++| ++|+++|++| +|++|+|. ++++||||+|+++++|++||+.||+++|++++|+|+
T Consensus 4 ~~~~l~V~nLp~~~t~---~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNC---QEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCEEEESCCSSCCH---HHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCEEEEeCCCCCCCH---HHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 45788 9999999999 9999999999 99999884 578999999999999999999999999999999999
Q ss_pred eccCCCC
Q 023632 97 KAEPKKP 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
+|..+..
T Consensus 74 ~a~~~~~ 80 (88)
T 1wg1_A 74 LQPTDAL 80 (88)
T ss_dssp ECCCCCC
T ss_pred EcCCCce
Confidence 9976543
No 156
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=5.2e-17 Score=128.81 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=67.3
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHcCCCccCC--ceeEE
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF-GFITFDTEQAVDDLLAKGNKLELAG--AQVEV 95 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~-aFV~F~s~e~a~~Ai~~lng~~l~g--~~i~V 95 (279)
..| |.||++.+++ ++|+++|++||+|++|+|+.. ++| |||+|+++++|++||+.||+.+|.+ ++|+|
T Consensus 26 l~l~V~NL~~~vt~---~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V 96 (124)
T 2e5i_A 26 LLLSIQNPLYPITV---DVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKI 96 (124)
T ss_dssp EEEEEESCCSCCCH---HHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEE
T ss_pred EEEEEcCcCCCCCH---HHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEE
Confidence 345 8999999999 999999999999999999752 276 9999999999999999999999987 69999
Q ss_pred eeccCCCC
Q 023632 96 KKAEPKKP 103 (279)
Q Consensus 96 ~~a~~~~~ 103 (279)
++|+++..
T Consensus 97 ~~Ak~~~l 104 (124)
T 2e5i_A 97 EYARPTRL 104 (124)
T ss_dssp ECCSCSCC
T ss_pred EEecCCcc
Confidence 99988753
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=4.1e-17 Score=137.17 Aligned_cols=84 Identities=20% Similarity=0.400 Sum_probs=79.5
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+.+|++++|+|
T Consensus 112 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 188 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLND---DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 188 (198)
T ss_dssp CCCCEEEEECCCTTCCH---HHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 456888 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 023632 96 KKAEPKKP 103 (279)
Q Consensus 96 ~~a~~~~~ 103 (279)
++|+++..
T Consensus 189 ~~a~~~~~ 196 (198)
T 2yh0_A 189 QRASVGAK 196 (198)
T ss_dssp EESCCCCC
T ss_pred EECCCCCC
Confidence 99988654
No 158
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.70 E-value=4.7e-17 Score=136.60 Aligned_cols=85 Identities=31% Similarity=0.524 Sum_probs=77.5
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+....++| |.|||+++|+ ++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+. ++++|+++.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTD---ESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp CCGGGGEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 45567889 9999999999 99999999999999999999999999999999999999999999988 8899999999
Q ss_pred EEeeccCCCC
Q 023632 94 EVKKAEPKKP 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|+++.++..
T Consensus 85 ~v~~~~~~~~ 94 (196)
T 1l3k_A 85 EPKRAVSRED 94 (196)
T ss_dssp EEEECCC---
T ss_pred eeecccCccc
Confidence 9999877644
No 159
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.70 E-value=1e-16 Score=127.99 Aligned_cols=80 Identities=13% Similarity=0.226 Sum_probs=71.2
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHHHHcCCCccCC--ce
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGF-GFITFDTEQAVDDLLAKGNKLELAG--AQ 92 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~-aFV~F~s~e~a~~Ai~~lng~~l~g--~~ 92 (279)
.+..+| |.||++++|+ ++|+++|++||+|++|+|+.+. ++| |||+|++.++|++||+.||+++|.+ ++
T Consensus 26 s~VL~I~V~NL~~~vte---~~L~~lFs~yG~V~~V~i~~~~-----~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTL---DVLHQIFSKFGTVLKIITFTKN-----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp CSEEEEEEESCCSCCCH---HHHHHHHTTSSCEEEEEEEEET-----TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CceEEEEECCCCCCCCH---HHHHHHHhCcCCEEEEEEEcCC-----CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 344566 9999999999 9999999999999999988642 678 9999999999999999999999998 89
Q ss_pred eEEeeccCCCCC
Q 023632 93 VEVKKAEPKKPN 104 (279)
Q Consensus 93 i~V~~a~~~~~~ 104 (279)
|+|++++++.-.
T Consensus 98 LrI~~ak~~~l~ 109 (130)
T 3zzy_A 98 LRIDFSKLTSLN 109 (130)
T ss_dssp EEEEECSCSSCC
T ss_pred EEEEecCCCcee
Confidence 999999886543
No 160
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=2.4e-17 Score=122.97 Aligned_cols=80 Identities=29% Similarity=0.546 Sum_probs=62.0
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
......++| |.|||+++|| ++|+++|++||+|++|+|+++ +||||||+|+++++|++++.. .+.+.+++
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te---~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~~--~~~~~g~~ 75 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTA---EELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCGE--DLIIKGIS 75 (89)
T ss_dssp -----CCEEEEESCCTTCCH---HHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTTC--EEEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcCC--CcccCCEE
Confidence 345677888 9999999999 999999999999999999875 689999999999999843221 34456999
Q ss_pred eEEeeccCCCC
Q 023632 93 VEVKKAEPKKP 103 (279)
Q Consensus 93 i~V~~a~~~~~ 103 (279)
|+|++|+++..
T Consensus 76 v~v~~a~~k~~ 86 (89)
T 3d2w_A 76 VHISNAEPKHN 86 (89)
T ss_dssp EEEEECC----
T ss_pred EEEEEcCCCCc
Confidence 99999988654
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.2e-17 Score=134.25 Aligned_cols=80 Identities=38% Similarity=0.696 Sum_probs=76.1
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||+++++ ++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+ +|++.|++++|+|+
T Consensus 86 ~~~~l~V~nlp~~~t~---~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~ 161 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRP---KEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIK 161 (167)
T ss_dssp HCEEEEEEEECTTCCH---HHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEE
T ss_pred CCCeEEECCCCCCCCH---HHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEe
Confidence 35678 9999999999 9999999999999999999999999999999999999999999998 79999999999999
Q ss_pred eccCC
Q 023632 97 KAEPK 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+|+|+
T Consensus 162 ~a~pk 166 (167)
T 2cjk_A 162 RAEPR 166 (167)
T ss_dssp ECCCC
T ss_pred ecCCC
Confidence 99876
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=7.3e-17 Score=132.69 Aligned_cols=80 Identities=21% Similarity=0.426 Sum_probs=76.0
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+++|++++|+|
T Consensus 92 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 168 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLND---DQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLV 168 (172)
T ss_dssp TTTTCEEEECCCTTCCH---HHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCEEEEEcCCCcCCH---HHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345788 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecc
Q 023632 96 KKAE 99 (279)
Q Consensus 96 ~~a~ 99 (279)
++|.
T Consensus 169 ~~As 172 (172)
T 2g4b_A 169 QRAS 172 (172)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9873
No 163
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.8e-17 Score=122.78 Aligned_cols=79 Identities=33% Similarity=0.571 Sum_probs=67.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||++++| ++|+++|++||+|++|+|+++ +++||||+|+++++|++|+.. .+.+++++|+|
T Consensus 3 ~~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v 72 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTE---DELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHI 72 (88)
T ss_dssp SCCCEEEEESCCSSSCH---HHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEE
T ss_pred CCCcEEEEeCCCCCCCH---HHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEE
Confidence 456889 9999999999 999999999999999999865 689999999999999875443 35668999999
Q ss_pred eeccCCCCCC
Q 023632 96 KKAEPKKPNL 105 (279)
Q Consensus 96 ~~a~~~~~~~ 105 (279)
++++++....
T Consensus 73 ~~a~~~~~~~ 82 (88)
T 1wf0_A 73 SNAEPKHNSN 82 (88)
T ss_dssp ECCCCCCCCC
T ss_pred EecCCCCCCC
Confidence 9998876544
No 164
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1e-16 Score=124.69 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=67.3
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCC---CCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHST---SRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~t---g~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
....++| |.|||++++| ++|+++|++||+|+ +.|+.++.+ +++++||||+|+++++|++||+.|+ .|+++
T Consensus 5 ~~~~~~lfVgnLp~~~te---~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDE---DEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGK 78 (114)
T ss_dssp SSCCCCEEEECCCTTCCH---HHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTE
T ss_pred CCCCCEEEEcCCCCCCCH---HHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCc
Confidence 3456888 9999999999 99999999999999 888888877 6999999999999999999999983 46666
Q ss_pred eeEEeecc
Q 023632 92 QVEVKKAE 99 (279)
Q Consensus 92 ~i~V~~a~ 99 (279)
.|.|..+.
T Consensus 79 ~~~~~~~~ 86 (114)
T 2dnl_A 79 LYLCVSSP 86 (114)
T ss_dssp EEEEECCS
T ss_pred EEEeccCC
Confidence 66665444
No 165
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.68 E-value=7e-17 Score=138.74 Aligned_cols=81 Identities=22% Similarity=0.412 Sum_probs=74.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
..++| |.|||+++|| ++|+++|++||+|++|+|++|+ ..+++||||+|+++++|++||++||+++|++++|+|+
T Consensus 102 ~~~~l~v~nl~~~~t~---~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~ 176 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDN---KALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176 (213)
T ss_dssp CTTEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccccceECCcccccHH---HHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678 9999999999 9999999999999999999985 4479999999999999999999999999999999999
Q ss_pred eccCCCC
Q 023632 97 KAEPKKP 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
+|+++++
T Consensus 177 ~a~~~~~ 183 (213)
T 4f02_A 177 RFKSRKE 183 (213)
T ss_dssp ECCCHHH
T ss_pred EcCCCcc
Confidence 9987654
No 166
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=5.8e-17 Score=128.34 Aligned_cols=77 Identities=12% Similarity=0.217 Sum_probs=70.0
Q ss_pred cee-eeCC----CCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHH----HHHHHH--HcC
Q 023632 20 QKM-TGLS----LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQA----VDDLLA--KGN 84 (279)
Q Consensus 20 ~~l-V~nL----p~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~----a~~Ai~--~ln 84 (279)
++| |.|| |+.|+| ++|+++|++||+|++|.|+.|+.|++++|||||+|.+ +++ |.+||+ .||
T Consensus 3 ~kI~VgnL~~~~~~~tte---~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~ln 79 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQD---ISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESS 79 (136)
T ss_dssp CEEEEEESSSSCCCCCCH---HHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTT
T ss_pred cEEEEeCCCCCCCCCCCH---HHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhc
Confidence 577 9999 999999 9999999999999999999999999999999999996 333 889998 789
Q ss_pred CCccCCceeEEeecc
Q 023632 85 KLELAGAQVEVKKAE 99 (279)
Q Consensus 85 g~~l~g~~i~V~~a~ 99 (279)
+..|++++|+|++.+
T Consensus 80 g~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 80 GCFIMGFKFEVILNK 94 (136)
T ss_dssp CEEETTEEEEEEECC
T ss_pred CCeecCcEEEEEECc
Confidence 999999999999764
No 167
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=117.67 Aligned_cols=81 Identities=7% Similarity=0.073 Sum_probs=68.1
Q ss_pred CCCce-e-eeCCCCCCCcccH-HHHHHHHhcC-CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 17 TTTQK-M-TGLSLTPVTEPAL-DEFKDFFMQF-GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 17 ~~~~~-l-V~nLp~~~te~~~-~~L~~~F~~~-G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
++..+ | |.|||+++++++| ++|+++|++| |+|++| |+ |||||+|++.++|++||+.||+.+|.+++
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34455 8 9999999999332 2377999999 599998 33 99999999999999999999999999999
Q ss_pred eEEeeccCCCCCCCC
Q 023632 93 VEVKKAEPKKPNLPQ 107 (279)
Q Consensus 93 i~V~~a~~~~~~~~~ 107 (279)
|+|++|+.+.+.-..
T Consensus 76 i~v~~A~~~sd~~~~ 90 (96)
T 2diu_A 76 IIVSFTPKNRELCET 90 (96)
T ss_dssp CEEESSCCSCCCCCC
T ss_pred EEEEecCCCcceeEe
Confidence 999999987665543
No 168
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=2.2e-16 Score=121.58 Aligned_cols=85 Identities=15% Similarity=0.067 Sum_probs=72.0
Q ss_pred CCCcee-eeCCCC--CCCcccHHHHHHHHhcCCCeEEEEEeecCCC-CCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 17 TTTQKM-TGLSLT--PVTEPALDEFKDFFMQFGDVQEHQIMRDHST-SRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 17 ~~~~~l-V~nLp~--~~te~~~~~L~~~F~~~G~V~~v~i~~d~~t-g~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.++++| |.||.. ++.++..++|+++|++||+|++|.|++++.+ .+++||+||+|+++++|++||+.||+.+|++++
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 456778 999963 3322222899999999999999999998764 689999999999999999999999999999999
Q ss_pred eEEeeccCC
Q 023632 93 VEVKKAEPK 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|+++.+.
T Consensus 86 i~v~~a~~~ 94 (105)
T 2pe8_A 86 VKACFYNLD 94 (105)
T ss_dssp CEEEECCHH
T ss_pred EEEEEcCHH
Confidence 999999753
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.67 E-value=3e-16 Score=128.32 Aligned_cols=80 Identities=20% Similarity=0.444 Sum_probs=75.4
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC--ce
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG--AQ 92 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g--~~ 92 (279)
....++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||+..|++ ++
T Consensus 86 ~~~~~~l~v~nl~~~~t~---~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 162 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITD---DQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQP 162 (168)
T ss_dssp TTTTCEEEEESCCTTCCH---HHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred cCCCCCEEEeCCCCCCCH---HHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeE
Confidence 3456788 9999999999 9999999999999999999999899999999999999999999999999999987 99
Q ss_pred eEEeec
Q 023632 93 VEVKKA 98 (279)
Q Consensus 93 i~V~~a 98 (279)
|+|++|
T Consensus 163 l~V~~A 168 (168)
T 1b7f_A 163 LSVRLA 168 (168)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999886
No 170
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2e-16 Score=128.80 Aligned_cols=80 Identities=19% Similarity=0.305 Sum_probs=74.2
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeec
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
++| |.|||+++|+ ++|+++|++||+|++|+|++++ ++++++||||+|.++++|++||+.||+..|.+++|+|+++
T Consensus 1 R~l~V~nlp~~~t~---~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITE---DILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCH---HHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCH---HHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 578 9999999999 9999999999999999999997 4679999999999999999999999999999999999999
Q ss_pred cCCCC
Q 023632 99 EPKKP 103 (279)
Q Consensus 99 ~~~~~ 103 (279)
.++..
T Consensus 77 ~~~~~ 81 (166)
T 3md3_A 77 FQSQQ 81 (166)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 77654
No 171
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=1.9e-16 Score=130.22 Aligned_cols=79 Identities=25% Similarity=0.450 Sum_probs=72.9
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC---Cce
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA---GAQ 92 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~---g~~ 92 (279)
...++| |.|||+++|+ ++|+++|++||+|++|+|++++ ++++++||||+|+++++|++||+.||+..|. +++
T Consensus 93 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTE---NDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred CCCCeEEEcCCCCcCCH---HHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 356788 9999999999 9999999999999999999996 6899999999999999999999999998777 499
Q ss_pred eEEeecc
Q 023632 93 VEVKKAE 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
|+|++|.
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999984
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.67 E-value=1.8e-16 Score=135.09 Aligned_cols=83 Identities=20% Similarity=0.407 Sum_probs=74.7
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++|+ ++|+++|++||+|++|+|++++.++++++||||+|+++++|++||+.||++.|.+++|+|
T Consensus 26 ~~~~~l~V~nLp~~~t~---~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGE---DTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHHTEEEEECCCTTCCH---HHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred CcCCEEEEECCCCCCCH---HHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 345788 9999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCC
Q 023632 96 KKAEPKK 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
.++..+.
T Consensus 103 ~~~~~~~ 109 (216)
T 2qfj_A 103 GRPSNIG 109 (216)
T ss_dssp ECCSCCG
T ss_pred ecCCCcc
Confidence 8876553
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.66 E-value=2.5e-16 Score=124.23 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=70.0
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
..+.++| |.|| ++++ ++|+++|++||+|++|+|+ ++++||||+|+++++|++||+.||+++|++++|+
T Consensus 36 ~~~~~~lfVgnl--~~te---~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~ 104 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTP---TLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 104 (121)
T ss_dssp CCCCCEEEEECS--SCCH---HHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCEEEEcCC--CCCH---HHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456888 9996 6999 9999999999999999986 4588999999999999999999999999999999
Q ss_pred EeeccCCCCCC
Q 023632 95 VKKAEPKKPNL 105 (279)
Q Consensus 95 V~~a~~~~~~~ 105 (279)
|++++++....
T Consensus 105 V~~a~~~~~~~ 115 (121)
T 2bz2_A 105 VNIARKQPMLD 115 (121)
T ss_dssp EEECCSSCC--
T ss_pred EEEeCCCCCCC
Confidence 99998875544
No 174
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.66 E-value=2.3e-16 Score=124.01 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=71.7
Q ss_pred CCcee-eeCC--CCCCCcccHHHHHHHHhcCCCeEEEEEeecCC----CCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 18 TTQKM-TGLS--LTPVTEPALDEFKDFFMQFGDVQEHQIMRDHS----TSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 18 ~~~~l-V~nL--p~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~----tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
++++| |.|| |.++.++..++|+++|++||+|++|+|++++. +.+++||+||+|+++++|++||+.||+..|++
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57788 9998 34444433489999999999999999999865 45788999999999999999999999999999
Q ss_pred ceeEEeeccC
Q 023632 91 AQVEVKKAEP 100 (279)
Q Consensus 91 ~~i~V~~a~~ 100 (279)
++|+|+++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999998864
No 175
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=2.4e-16 Score=116.03 Aligned_cols=71 Identities=21% Similarity=0.430 Sum_probs=65.7
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~----G-------~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.+.++| |.|||+++++ ++|+++|++| + +|++|+|+++ ++||||+|+++++|++|| .||
T Consensus 4 ~~~~~l~V~nLp~~~t~---~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITE---EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGGEEEEESCCTTCCH---HHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCCEEEEeCCCCCCCH---HHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcC
Confidence 456889 9999999999 9999999999 8 9999998865 789999999999999999 999
Q ss_pred CCccCCceeEEee
Q 023632 85 KLELAGAQVEVKK 97 (279)
Q Consensus 85 g~~l~g~~i~V~~ 97 (279)
+++|++++|+|+.
T Consensus 74 g~~~~g~~l~V~r 86 (87)
T 2hzc_A 74 GIIFQGQSLKIRR 86 (87)
T ss_dssp TCEETTEECEEEC
T ss_pred CCEECCeEEEEeC
Confidence 9999999999974
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=5.1e-16 Score=126.52 Aligned_cols=79 Identities=28% Similarity=0.442 Sum_probs=73.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce--e
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ--V 93 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~--i 93 (279)
...++| |.|||+++++ ++|+++|++||+|++|+|+.++.++++++||||+|+++++|++||+.||+.+|.++. |
T Consensus 86 ~~~~~l~v~nl~~~~t~---~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i 162 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQ---KELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPI 162 (167)
T ss_dssp GTTCEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCC
T ss_pred CCCCcEEECCCCCcCCH---HHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccce
Confidence 456788 9999999999 999999999999999999999989999999999999999999999999999999965 7
Q ss_pred EEeec
Q 023632 94 EVKKA 98 (279)
Q Consensus 94 ~V~~a 98 (279)
+|++|
T Consensus 163 ~v~~A 167 (167)
T 1fxl_A 163 TVKFA 167 (167)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88775
No 177
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.65 E-value=5.1e-16 Score=127.64 Aligned_cols=83 Identities=27% Similarity=0.450 Sum_probs=75.0
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCC--CcccEEEEEEcCHHHHHHHHHHcCCCccC---Cc
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTS--RSRGFGFITFDTEQAVDDLLAKGNKLELA---GA 91 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg--~~rG~aFV~F~s~e~a~~Ai~~lng~~l~---g~ 91 (279)
+.++| |.|||+++|+ ++|+++|++||+|++|+|++++.++ ++++||||+|.++++|++||+.||+..+. .+
T Consensus 2 ~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~ 78 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSE---KDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHH 78 (175)
T ss_dssp CCEEEEEESCCTTCCH---HHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSS
T ss_pred CceEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCcc
Confidence 46788 9999999999 9999999999999999999999887 89999999999999999999999998776 67
Q ss_pred eeEEeeccCCCC
Q 023632 92 QVEVKKAEPKKP 103 (279)
Q Consensus 92 ~i~V~~a~~~~~ 103 (279)
.|.|.++.++..
T Consensus 79 ~~~~~~~~~~~~ 90 (175)
T 3nmr_A 79 PIQMKPADSEKN 90 (175)
T ss_dssp CCEEEECGGGCC
T ss_pred ceEEcccccccc
Confidence 888888776544
No 178
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.64 E-value=5.5e-16 Score=132.96 Aligned_cols=77 Identities=16% Similarity=0.218 Sum_probs=71.3
Q ss_pred CCcee-eeCCC-CCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 18 TTQKM-TGLSL-TPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 18 ~~~~l-V~nLp-~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
..++| |.||| +++++ ++|+++|++||+|++|+|++++ ++||||+|+++++|++||+.||+++|.+++|+|
T Consensus 3 ~~~~l~V~nL~~~~~~~---~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v 74 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNC---DRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNV 74 (205)
T ss_dssp CCSEEEEECCCTTTCCH---HHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCEEEEeCCCcccCCH---HHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEE
Confidence 46788 99999 89999 9999999999999999998763 799999999999999999999999999999999
Q ss_pred eeccCCC
Q 023632 96 KKAEPKK 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
++++.+.
T Consensus 75 ~~s~~~~ 81 (205)
T 3tyt_A 75 CVSKQPA 81 (205)
T ss_dssp EECSCSC
T ss_pred EEccCCc
Confidence 9987544
No 179
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.1e-16 Score=119.02 Aligned_cols=87 Identities=11% Similarity=0.205 Sum_probs=70.8
Q ss_pred CCCCCcee-eeCCCCCCC--cc------cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 15 RQTTTQKM-TGLSLTPVT--EP------ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~t--e~------~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
....+++| |.||....+ ++ ..++|+++|++||+|++|.| .++ .+++||||+|+++++|++||+.||+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 44567888 999954432 10 01799999999999999966 554 3799999999999999999999999
Q ss_pred CccCCceeEEeeccCCCCCC
Q 023632 86 LELAGAQVEVKKAEPKKPNL 105 (279)
Q Consensus 86 ~~l~g~~i~V~~a~~~~~~~ 105 (279)
+.|++++|+|+++.++....
T Consensus 87 ~~~~gr~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTTDYQ 106 (112)
T ss_dssp CEETTEECEEEECCSCCCSS
T ss_pred CEECCcEEEEEEeCCCCCcc
Confidence 99999999999998865543
No 180
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.3e-15 Score=135.62 Aligned_cols=84 Identities=17% Similarity=0.314 Sum_probs=75.3
Q ss_pred CCCCCCcee-eeCCCCCCCcccHHHHH----HHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 14 NRQTTTQKM-TGLSLTPVTEPALDEFK----DFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 14 ~~~~~~~~l-V~nLp~~~te~~~~~L~----~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
.+...+++| |.|||+++++ ++|+ ++|++||+|++|+|++ ++++++||||+|+++++|++||+.||+++|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~---~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKK---DELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPF 77 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCH---HHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCee
Confidence 345667889 9999999999 7755 8999999999999885 678899999999999999999999999999
Q ss_pred CCceeEEeeccCCCC
Q 023632 89 AGAQVEVKKAEPKKP 103 (279)
Q Consensus 89 ~g~~i~V~~a~~~~~ 103 (279)
.+++|+|++++.+..
T Consensus 78 ~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 78 YDKPMRIQYAKTDSD 92 (282)
T ss_pred CCcEEEEEEeccCcc
Confidence 999999999976543
No 181
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.62 E-value=1.1e-15 Score=117.65 Aligned_cols=85 Identities=15% Similarity=0.164 Sum_probs=71.7
Q ss_pred CCCcee-eeCC--CCCCCcc-----cHHHHHHHHhcCCCeEEEEEeecCCC--CCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 17 TTTQKM-TGLS--LTPVTEP-----ALDEFKDFFMQFGDVQEHQIMRDHST--SRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 17 ~~~~~l-V~nL--p~~~te~-----~~~~L~~~F~~~G~V~~v~i~~d~~t--g~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
.+++.| |.|+ |.++.++ ..++|+++|++||+|++|+|++++.+ .+++||+||+|+++++|++||+.||+.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 356777 9988 4444431 12689999999999999999998765 468999999999999999999999999
Q ss_pred ccCCceeEEeeccCC
Q 023632 87 ELAGAQVEVKKAEPK 101 (279)
Q Consensus 87 ~l~g~~i~V~~a~~~ 101 (279)
.|++++|+|+++.+.
T Consensus 83 ~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 83 KFANRVVVTKYCDPD 97 (105)
T ss_dssp EETTEECEEEEECHH
T ss_pred EeCCCEEEEEEeCHH
Confidence 999999999988653
No 182
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.62 E-value=6.2e-16 Score=126.50 Aligned_cols=79 Identities=35% Similarity=0.663 Sum_probs=73.3
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
++++| |.|||+++|+ ++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+. .+.|+++.|.|.
T Consensus 2 ~~~~l~v~nLp~~~t~---~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~ 76 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTE---DNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPK 76 (167)
T ss_dssp GGGEEEECSCCTTCCH---HHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCE
T ss_pred CCcEEEEeCCCCCCCH---HHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccc
Confidence 45788 9999999999 99999999999999999999999999999999999999999999996 468999999999
Q ss_pred eccCC
Q 023632 97 KAEPK 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
++.++
T Consensus 77 ~~~~~ 81 (167)
T 2cjk_A 77 RAIPR 81 (167)
T ss_dssp ECCCH
T ss_pred cccch
Confidence 88654
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.60 E-value=2.4e-15 Score=130.48 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCCCCcee-eeCCCC-CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLT-PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~-~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.....++| |.|||+ ++++ ++|+++|++||+|++|+|++++ ++||||+|.++++|++||+.||+..|.+++
T Consensus 30 ~~~~~~~l~V~nLp~~~~te---~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 101 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTP---QSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKP 101 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCH---HHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSB
T ss_pred CCCCCCEEEEeCCCcccCCH---HHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 34567889 999999 9999 9999999999999999999885 789999999999999999999999999999
Q ss_pred eEEeeccCCCC
Q 023632 93 VEVKKAEPKKP 103 (279)
Q Consensus 93 i~V~~a~~~~~ 103 (279)
|+|++++++..
T Consensus 102 l~v~~a~~~~~ 112 (229)
T 2adc_A 102 IRITLSKHQNV 112 (229)
T ss_dssp CEEECCSCCCC
T ss_pred EEEEEecCccc
Confidence 99999986643
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.60 E-value=1.5e-15 Score=133.29 Aligned_cols=81 Identities=16% Similarity=0.250 Sum_probs=69.9
Q ss_pred CCCCCcee-eeCCCCCC---------CcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 15 RQTTTQKM-TGLSLTPV---------TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~---------te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
.+...++| |+|||+++ +| ++|+++|++||+|++|+|+.+ |+||||+|+++++|++||++||
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tE---e~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~ 200 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIE---SRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMS 200 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHH---HHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHT
T ss_pred cccCCceeecCCCChhhhcccccccCcH---HHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhC
Confidence 34567899 99999998 68 999999999999999999854 7899999999999999999999
Q ss_pred CCcc------------CCceeEEeeccCCCCC
Q 023632 85 KLEL------------AGAQVEVKKAEPKKPN 104 (279)
Q Consensus 85 g~~l------------~g~~i~V~~a~~~~~~ 104 (279)
++.| .++.|.|++|+++..+
T Consensus 201 g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 201 NQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp TCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred CCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 9999 8999999999875443
No 185
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=1.5e-15 Score=125.37 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=70.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
...++| |.|||+++++ ++|+++|++|++|..+ ..++++++||||+|+++++|++||+.||+.+|++++|+|
T Consensus 97 ~~~~~l~v~nlp~~~t~---~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 97 RAARTLLAKNLSFNITE---DELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp GGGGEEEEESCCSSCCH---HHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred ccCCEEEEeCCCCCCCH---HHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 355788 9999999999 9999999999987665 458899999999999999999999999999999999999
Q ss_pred eeccCC
Q 023632 96 KKAEPK 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++|+++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999875
No 186
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=3.1e-15 Score=127.18 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=71.2
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
.++| |.|||+++|+ ++|+++|++||+|++|+|++++ +++++|||||+|+++++|++||+.++ .+|++++|+|++
T Consensus 109 ~~~l~V~nLp~~~t~---~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATL---DDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCH---HHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEE
T ss_pred cCEEEecCCCCcCCH---HHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEE
Confidence 4678 9999999999 9999999999999999999986 58999999999999999999998864 699999999998
Q ss_pred ccC
Q 023632 98 AEP 100 (279)
Q Consensus 98 a~~ 100 (279)
++.
T Consensus 184 ~~~ 186 (193)
T 2voo_A 184 KDD 186 (193)
T ss_dssp TTT
T ss_pred hHH
Confidence 765
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=1.8e-15 Score=135.22 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=74.9
Q ss_pred CCCcee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeecCC-CCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 17 TTTQKM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHS-TSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 17 ~~~~~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d~~-tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
...++| |.|||++ +++ ++|+++|++||+|++|+|++++. |+++++||||+|.++++|++|| .||+++|.+++|
T Consensus 208 ~~~~~l~v~nlp~~~~t~---~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i 283 (292)
T 2ghp_A 208 LEGREIMIRNLSTELLDE---NLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREI 283 (292)
T ss_dssp CTTTEEEEEEECTTTCCH---HHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEE
T ss_pred CCCceEEEECCCcccCCH---HHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEE
Confidence 456788 9999999 999 99999999999999999999876 6999999999999999999999 999999999999
Q ss_pred EEeeccCC
Q 023632 94 EVKKAEPK 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++|+++
T Consensus 284 ~V~~a~~k 291 (292)
T 2ghp_A 284 SVSLADKK 291 (292)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999876
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=6.5e-15 Score=131.10 Aligned_cols=86 Identities=15% Similarity=0.259 Sum_probs=80.1
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++++ ++|+++|++||+|++|+|++++.++++++||||+|.++++|++||+.||+..|++++|+
T Consensus 92 ~~~~~~l~v~nlp~~~t~---~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 92 QPTDALLCVANLPPSLTQ---QQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCCSCEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCEEEEcCCCCcCCH---HHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3456788 9999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 023632 95 VKKAEPKKPN 104 (279)
Q Consensus 95 V~~a~~~~~~ 104 (279)
|+++.++...
T Consensus 169 v~~a~~~~~~ 178 (284)
T 3smz_A 169 VHWTDAGQLT 178 (284)
T ss_dssp EEECCGGGCC
T ss_pred EEECCCCCCC
Confidence 9999876543
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.59 E-value=4.1e-15 Score=132.41 Aligned_cols=86 Identities=13% Similarity=0.226 Sum_probs=79.0
Q ss_pred CCCCCcee-eeCCCCCC-CcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCce
Q 023632 15 RQTTTQKM-TGLSLTPV-TEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~-te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~ 92 (279)
.....++| |.|||+++ ++ ++|+++|++||.|++|+|++++ ++++++||||+|+++++|++||+.||+.+|++++
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~---~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 255 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDV---DALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSH 255 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCH---HHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCccEEEEecCCcccCCH---HHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeE
Confidence 34566788 99999995 99 9999999999999999999986 7899999999999999999999999999999999
Q ss_pred eEEeeccCCCCC
Q 023632 93 VEVKKAEPKKPN 104 (279)
Q Consensus 93 i~V~~a~~~~~~ 104 (279)
|+|++++++..+
T Consensus 256 l~v~~a~~~~~~ 267 (284)
T 3smz_A 256 LRVSFCAPGPPG 267 (284)
T ss_dssp CEEEECCSSSCH
T ss_pred EEEEEecCCCcc
Confidence 999999887653
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.57 E-value=3.7e-15 Score=125.70 Aligned_cols=78 Identities=14% Similarity=0.195 Sum_probs=72.3
Q ss_pred CCcee-eeCCCC-CCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 18 TTQKM-TGLSLT-PVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 18 ~~~~l-V~nLp~-~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
..++| |.|||+ ++++ ++|+++|++||+|++|+|++++ ++||||+|+++++|++||+.||+..|.+++|+|
T Consensus 2 ~~~~l~v~nlp~~~~~~---~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 73 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTP---QSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 73 (198)
T ss_dssp CCCEEEEECCCSSSCCH---HHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEE
T ss_pred CCcEEEEeCCCcccCCH---HHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEE
Confidence 45788 999999 9999 9999999999999999999875 789999999999999999999999999999999
Q ss_pred eeccCCCC
Q 023632 96 KKAEPKKP 103 (279)
Q Consensus 96 ~~a~~~~~ 103 (279)
++++++..
T Consensus 74 ~~a~~~~~ 81 (198)
T 1qm9_A 74 TLSKHQNV 81 (198)
T ss_dssp EECCCCSC
T ss_pred EEecCCCc
Confidence 99987643
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=2.8e-14 Score=108.81 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=63.9
Q ss_pred Ccee-eeCCC-------CCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 19 TQKM-TGLSL-------TPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 19 ~~~l-V~nLp-------~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
.++| |.-.. .+++| ++|+++|++||+|++|.|+ .++++||||+|+++++|++||+.++ .+.+
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te---~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g 79 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSK---DVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV--GLVD 79 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCH---HHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC--BCSS
T ss_pred cceEEEeeeccCccCcCCCCCH---HHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC--CCCC
Confidence 4566 65443 45888 9999999999999999998 3679999999999999999999954 4679
Q ss_pred ceeEEeeccCCCCCC
Q 023632 91 AQVEVKKAEPKKPNL 105 (279)
Q Consensus 91 ~~i~V~~a~~~~~~~ 105 (279)
++|+|++++++....
T Consensus 80 ~~l~V~~a~~~~~~~ 94 (100)
T 2d9o_A 80 NPLKISWLEGQPQDA 94 (100)
T ss_dssp SBCEEECSSCCCCCC
T ss_pred CeEEEEEccCCCCCC
Confidence 999999998765443
No 192
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.57 E-value=8.5e-15 Score=130.24 Aligned_cols=77 Identities=13% Similarity=0.195 Sum_probs=71.1
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC-Cce
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQ 92 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-g~~ 92 (279)
.....++| |.|||+++++ ++|+++|++||.|++|+|+.++ ++||||+|++.++|++||+.||+++|. +++
T Consensus 203 ~~~~~~~l~v~nl~~~~~~---~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 274 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNE---LMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNA 274 (282)
T ss_pred CCCCCCEEEEeCCCCcCCH---HHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCE
Confidence 34456788 9999999999 9999999999999999999764 589999999999999999999999999 999
Q ss_pred eEEeecc
Q 023632 93 VEVKKAE 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
|+|++|+
T Consensus 275 l~v~~ak 281 (282)
T 3pgw_A 275 MKISFAK 281 (282)
T ss_pred EEEEEec
Confidence 9999986
No 193
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.5e-15 Score=116.71 Aligned_cols=75 Identities=13% Similarity=0.234 Sum_probs=63.4
Q ss_pred eeCCCCCCCcccH--------HHHHHHH-hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 23 TGLSLTPVTEPAL--------DEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 23 V~nLp~~~te~~~--------~~L~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+.+||+++++++| ++|+++| ++||+|++|+|++++ +++++|||||+|+++++|++||+.||+..|++++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 5677788887222 3444555 999999999999886 47899999999999999999999999999999999
Q ss_pred EEeec
Q 023632 94 EVKKA 98 (279)
Q Consensus 94 ~V~~a 98 (279)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99886
No 194
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=9.6e-16 Score=126.59 Aligned_cols=84 Identities=18% Similarity=0.300 Sum_probs=73.6
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCcee
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQV 93 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i 93 (279)
+..+.++| |.|||+++|+ ++|+++|++|+.|.. .++++..++++++||||+|.++++|++||+ ||+++|.+++|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~---~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 83 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSV---AELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 83 (175)
T ss_dssp SCSSSEEEEEECCCTTSCH---HHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCH---HHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEE
Confidence 45677889 9999999999 999999999998766 345555688899999999999999999995 89999999999
Q ss_pred EEeeccCCCC
Q 023632 94 EVKKAEPKKP 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|+++.++..
T Consensus 84 ~v~~~~~~~~ 93 (175)
T 1fje_B 84 KLEKPKGRDS 93 (175)
T ss_dssp EEECCCCSSC
T ss_pred EEecCCCccc
Confidence 9999987654
No 195
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2.1e-14 Score=124.52 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=70.7
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC-Ccee
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQV 93 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-g~~i 93 (279)
.+.++| |.|||+++++ ++|+++|++|| +|++|+|+.+ .++||||+|++.++|++||+.||+.+|. +++|
T Consensus 149 ~~~~~l~V~nlp~~~t~---~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l 220 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSE---EDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHL 220 (229)
T ss_dssp CSCSEEEEECCCTTCCH---HHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBC
T ss_pred CCCCEEEEeCCCccCCH---HHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeE
Confidence 346888 9999999999 99999999999 9999999653 3689999999999999999999999999 9999
Q ss_pred EEeeccCC
Q 023632 94 EVKKAEPK 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++++
T Consensus 221 ~v~~a~~~ 228 (229)
T 2adc_A 221 RVSFSKST 228 (229)
T ss_dssp EEEECSSC
T ss_pred EEEEecCC
Confidence 99999875
No 196
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1e-14 Score=122.97 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=70.8
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC-Ccee
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-GAQV 93 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-g~~i 93 (279)
.++++| |.|||+++++ ++|+++|++|| +|++|+|+.+. +++|||+|+++++|++||+.||+++|. +++|
T Consensus 118 ~~~~~l~v~nl~~~~~~---~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l 189 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSE---EDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHL 189 (198)
T ss_dssp CCCCEEEECCCCTTCCH---HHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSC
T ss_pred CCccEEEEeCCCCCCCH---HHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeE
Confidence 346788 9999999999 99999999999 99999997642 789999999999999999999999999 9999
Q ss_pred EEeeccCC
Q 023632 94 EVKKAEPK 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++++
T Consensus 190 ~v~~a~~~ 197 (198)
T 1qm9_A 190 RVSFSKST 197 (198)
T ss_dssp CEEEECCC
T ss_pred EEEeeccc
Confidence 99999875
No 197
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.52 E-value=1.3e-14 Score=124.28 Aligned_cols=77 Identities=14% Similarity=0.195 Sum_probs=68.3
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCe--EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc--
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDV--QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA-- 91 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V--~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~-- 91 (279)
.+.++| |.|||+++|| ++|+++|++||.| ++|+|+.++ +++++||||+|+++++|++||+.||+++|.++
T Consensus 121 ~p~~~l~v~NLp~~~t~---~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTE---ENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCCSEEEEEEECTTCCH---HHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred CCcceEEEeCCCCCCCH---HHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 345789 9999999999 9999999999999 899998875 45679999999999999999999999999876
Q ss_pred --eeEEeec
Q 023632 92 --QVEVKKA 98 (279)
Q Consensus 92 --~i~V~~a 98 (279)
+|.|++|
T Consensus 196 ~~p~~vk~~ 204 (205)
T 3tyt_A 196 PYPYTLKLC 204 (205)
T ss_dssp SSCEECEEE
T ss_pred CcceEEEec
Confidence 5777765
No 198
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.51 E-value=2.7e-14 Score=126.30 Aligned_cols=84 Identities=21% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC-CccC---Cc
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-LELA---GA 91 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng-~~l~---g~ 91 (279)
.+.++| |.|||+++|+ ++|+++|++||+|++|+|+.| .++++++||||+|++.++|++||+.||+ ..+. ++
T Consensus 94 ~~~~~l~v~nl~~~~t~---~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r 169 (261)
T 3sde_A 94 THGAALTVKNLSPVVSN---ELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPR 169 (261)
T ss_dssp CCSSEEEEESCCTTCCH---HHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCC
T ss_pred ccCCcccccCCCCCCCH---HHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCc
Confidence 345788 9999999999 999999999999999999999 5899999999999999999999999954 4443 99
Q ss_pred eeEEeeccCCCCC
Q 023632 92 QVEVKKAEPKKPN 104 (279)
Q Consensus 92 ~i~V~~a~~~~~~ 104 (279)
+|.|+++.+..+.
T Consensus 170 ~i~v~~~~~~~~~ 182 (261)
T 3sde_A 170 PVIVEPMEQFDDE 182 (261)
T ss_dssp BCEEEECCCEESS
T ss_pred eEEEeeccccCcc
Confidence 9999999876443
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=3e-14 Score=127.30 Aligned_cols=84 Identities=15% Similarity=0.192 Sum_probs=70.4
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
...++| |.|||+++++ ++|+++|++|| +|++|+|++++. +++++||||+|.++++|++||+.||++.|.+++|+
T Consensus 115 ~~~~~l~v~nlp~~~t~---~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQ---RNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCH---HHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCH---HHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 356788 9999999999 99999999999 999999999875 78899999999999999999999999999999999
Q ss_pred EeeccCCCCC
Q 023632 95 VKKAEPKKPN 104 (279)
Q Consensus 95 V~~a~~~~~~ 104 (279)
|+++.++...
T Consensus 191 v~~a~~~~~~ 200 (292)
T 2ghp_A 191 TKVSNPLEKS 200 (292)
T ss_dssp EEECCCC---
T ss_pred EEECCCCccc
Confidence 9999876543
No 200
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=2.7e-14 Score=126.33 Aligned_cols=77 Identities=29% Similarity=0.442 Sum_probs=70.5
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeE
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVE 94 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~ 94 (279)
....++| |.|||+++|+ ++|+++|++||+|++|+|+++ ++||||+|.++++|++||+.||++.|.++.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te---~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~ 89 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITE---EDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLR 89 (261)
T ss_dssp SCGGGEEEEESCCTTCCH---HHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCEEEEECCCCCCCH---HHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeE
Confidence 3455788 9999999999 999999999999999999754 68999999999999999999999999999999
Q ss_pred EeeccCC
Q 023632 95 VKKAEPK 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|+++.+.
T Consensus 90 v~~a~~~ 96 (261)
T 3sde_A 90 IRFATHG 96 (261)
T ss_dssp EEECCCS
T ss_pred eeecccC
Confidence 9998753
No 201
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.49 E-value=6e-14 Score=115.10 Aligned_cols=76 Identities=21% Similarity=0.437 Sum_probs=67.1
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~----G-------~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
+.++| |.|||+++|+ ++|+++|++| + .|.++++.++ ++||||+|.++++|++|| .||+
T Consensus 3 ~~~~l~V~nLp~~~t~---~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~------~g~afV~f~~~~~A~~A~-~~~~ 72 (172)
T 2g4b_A 3 SARRLYVGNIPFGITE---EAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDG 72 (172)
T ss_dssp GGGEEEEESCCTTCCH---HHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT------TTEEEEEESSHHHHHHHG-GGTT
T ss_pred cccEEEEcCCCcccCH---HHHHHHHHHHhhhcccccCCCCceeeeEecCC------CCEEEEEeCCHHHHHHHH-HhCC
Confidence 45788 9999999999 9999999999 6 7777776543 789999999999999999 8999
Q ss_pred CccCCceeEEeeccCCCC
Q 023632 86 LELAGAQVEVKKAEPKKP 103 (279)
Q Consensus 86 ~~l~g~~i~V~~a~~~~~ 103 (279)
+.|.+++|+|+++.+...
T Consensus 73 ~~~~g~~i~v~~~~~~~~ 90 (172)
T 2g4b_A 73 IIFQGQSLKIRRPHDYQP 90 (172)
T ss_dssp CEETTEECEEECCSSCCC
T ss_pred cEecCceeeecCCcccCC
Confidence 999999999998876543
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=1.2e-13 Score=115.81 Aligned_cols=76 Identities=20% Similarity=0.410 Sum_probs=66.0
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcC----C-------CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQF----G-------DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~----G-------~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
..++| |.|||+++|| ++|+++|++| + .|+++++. ++++||||+|.++++|++|| .||+
T Consensus 3 ~~~~l~V~nLp~~~te---~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g 72 (198)
T 2yh0_A 3 MARRLYVGNIPFGITE---EAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDG 72 (198)
T ss_dssp -CCEEEEESCCTTCCH---HHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTT
T ss_pred ceeEEEEcCCCCCCCH---HHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcC
Confidence 46789 9999999999 9999999999 5 56666554 45799999999999999999 8899
Q ss_pred CccCCceeEEeeccCCCC
Q 023632 86 LELAGAQVEVKKAEPKKP 103 (279)
Q Consensus 86 ~~l~g~~i~V~~a~~~~~ 103 (279)
+.|.+++|+|+++.++..
T Consensus 73 ~~~~g~~i~v~~~~~~~~ 90 (198)
T 2yh0_A 73 IIFQGQSLKIRRPHDYQP 90 (198)
T ss_dssp EEETTEEEEEECCCCCCC
T ss_pred CEEcCceEEEeCCCCCCC
Confidence 999999999999877643
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.44 E-value=2.4e-13 Score=106.13 Aligned_cols=80 Identities=15% Similarity=0.105 Sum_probs=65.2
Q ss_pred CCCcee-eeCCCCCCC--c-----ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 17 TTTQKM-TGLSLTPVT--E-----PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~t--e-----~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
.+++.| |.|+=.... + +..++|+++|++||+|++|.|+++. ++||+||+|+++++|++||+.||+.+|
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456677 888732221 1 1126889999999999999997663 589999999999999999999999999
Q ss_pred CCceeEEeeccC
Q 023632 89 AGAQVEVKKAEP 100 (279)
Q Consensus 89 ~g~~i~V~~a~~ 100 (279)
++++|+|+++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999998864
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=4.8e-13 Score=123.12 Aligned_cols=76 Identities=14% Similarity=0.166 Sum_probs=64.9
Q ss_pred CCCCCcee-eeC--CCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC--
Q 023632 15 RQTTTQKM-TGL--SLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA-- 89 (279)
Q Consensus 15 ~~~~~~~l-V~n--Lp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~-- 89 (279)
.+.++++| |.| |++.+|| ++|+++|++||+|++|.|+. .|+||||+|++.++|++||+.||++++.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te---~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~ 84 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSR---NQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDD 84 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCH---HHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECT
T ss_pred cCCCCCEEEEEcCCCCCCCCH---HHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccc
Confidence 46678889 999 5889999 99999999999999987753 4789999999999999999999999883
Q ss_pred -Cc--eeEEeecc
Q 023632 90 -GA--QVEVKKAE 99 (279)
Q Consensus 90 -g~--~i~V~~a~ 99 (279)
++ .|.|.+++
T Consensus 85 ~g~~~~ly~~~~~ 97 (345)
T 3tht_A 85 LGQKITLYLNFVE 97 (345)
T ss_dssp TSCEEECEEEECS
T ss_pred cCCceEEEEEEee
Confidence 34 56777664
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=3.5e-12 Score=94.72 Aligned_cols=76 Identities=18% Similarity=0.308 Sum_probs=62.1
Q ss_pred CCcee-eeCCCC----C-CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 18 TTQKM-TGLSLT----P-VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 18 ~~~~l-V~nLp~----~-~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
+..+| |.-++. + ..++.+.+|++.|++||+|..++|+.|+ +||+|++.++|.+||+ ||+++|+++
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 34455 665552 2 2333347899999999999999999884 8999999999999998 899999999
Q ss_pred eeEEeeccCCC
Q 023632 92 QVEVKKAEPKK 102 (279)
Q Consensus 92 ~i~V~~a~~~~ 102 (279)
.|+|+++++.-
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999988753
No 206
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.24 E-value=3.5e-11 Score=103.58 Aligned_cols=84 Identities=14% Similarity=0.129 Sum_probs=67.3
Q ss_pred CCCcee-eeCCC--CCCCcccHHHHHHHHhcCCCeEEEEEeecC----CCCCcccEEEEEEcCHHHHHHHHHHcCCCccC
Q 023632 17 TTTQKM-TGLSL--TPVTEPALDEFKDFFMQFGDVQEHQIMRDH----STSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89 (279)
Q Consensus 17 ~~~~~l-V~nLp--~~~te~~~~~L~~~F~~~G~V~~v~i~~d~----~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~ 89 (279)
..+..+ +.++- .++.+++.++|++.|++||+|++|.|+++. .+.+++|++||+|+++++|++||+.||+..++
T Consensus 122 ~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~ 201 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 201 (222)
T ss_dssp CBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred cccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC
Confidence 334444 55442 233333337999999999999999998654 45589999999999999999999999999999
Q ss_pred CceeEEeeccC
Q 023632 90 GAQVEVKKAEP 100 (279)
Q Consensus 90 g~~i~V~~a~~ 100 (279)
+|+|.|+++..
T Consensus 202 gr~i~~~~~~~ 212 (222)
T 3dxb_A 202 GRKVVAEVYDQ 212 (222)
T ss_dssp SSBCEEEECCH
T ss_pred CeEEEEEEcCH
Confidence 99999998764
No 207
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.5e-11 Score=94.53 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=66.4
Q ss_pred CCCCCcee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHHHcC--CCccC
Q 023632 15 RQTTTQKM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLAKGN--KLELA 89 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s-~e~a~~Ai~~ln--g~~l~ 89 (279)
.-++.+.| |.||+++ +++ ++|+++|++|++|+.|+|+++.. +|||+|.+ +++|++||++|| +.+|+
T Consensus 14 ~~~~G~il~v~~l~~~~~sr---edLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCR---EDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCH---HHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred cccCCeEEEEecCCCCcCCH---HHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 34556677 9999999 999 99999999999999999998864 59999999 899999999995 68899
Q ss_pred CceeEEeecc
Q 023632 90 GAQVEVKKAE 99 (279)
Q Consensus 90 g~~i~V~~a~ 99 (279)
+..++|+...
T Consensus 85 g~~~~~evL~ 94 (121)
T 1owx_A 85 NKEVTWEVLE 94 (121)
T ss_dssp SSSEEEEECC
T ss_pred CcEEEEEECC
Confidence 9988887644
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2e-11 Score=91.13 Aligned_cols=76 Identities=13% Similarity=0.225 Sum_probs=62.8
Q ss_pred CCCCCcee-eeCCCCC------CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 15 RQTTTQKM-TGLSLTP------VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~------~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
.-++..+| |.-++.+ ..++.+.+|.+.|++||+|..|+|+.|+ +||+|.+.++|.+||+ ||+++
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~ 81 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMK 81 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCee
Confidence 34556677 8877643 3433346799999999999999999884 9999999999999999 89999
Q ss_pred cCCceeEEeecc
Q 023632 88 LAGAQVEVKKAE 99 (279)
Q Consensus 88 l~g~~i~V~~a~ 99 (279)
|+++.|+|++..
T Consensus 82 v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 82 VKGRAVKISGPS 93 (95)
T ss_dssp ETTEEEEEECCC
T ss_pred eCCeEEEEeccC
Confidence 999999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.79 E-value=2.1e-08 Score=76.47 Aligned_cols=74 Identities=12% Similarity=0.109 Sum_probs=66.9
Q ss_pred CCCCcee-eeCCCCCCCcccHHHHHHHHhcC-----CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC
Q 023632 16 QTTTQKM-TGLSLTPVTEPALDEFKDFFMQF-----GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89 (279)
Q Consensus 16 ~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~-----G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~ 89 (279)
+.+.++| |-+||..|++ +.|++|++++ +.|++|.+..|. +=|+|+|+|+.+|-||.-+||+.+|+
T Consensus 18 ~~~~rtiaL~~ipDtvnd---arIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~ 88 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSP---SLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQ 88 (117)
T ss_dssp TTTTSCEEEECCCTTCCH---HHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEET
T ss_pred ccCCcEEEEecCCCCCCH---HHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeec
Confidence 3457889 9999999999 9999999999 999999998885 47999999999999999999999999
Q ss_pred CceeEEeec
Q 023632 90 GAQVEVKKA 98 (279)
Q Consensus 90 g~~i~V~~a 98 (279)
+++|+|-..
T Consensus 89 gr~Lr~gTv 97 (117)
T 2l9w_A 89 GKVIRSGTI 97 (117)
T ss_dssp TEEEEEECH
T ss_pred CeEEEecCH
Confidence 999998643
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.47 E-value=1.5e-06 Score=65.52 Aligned_cols=75 Identities=24% Similarity=0.336 Sum_probs=62.3
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcC-----CCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCC
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQF-----GDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAG 90 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~-----G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g 90 (279)
...++| |.|||+++++ +.|+-+|++- |+|++|+... .-|+|+|.+.+.|+++|++ ..+.|++
T Consensus 6 ~~~~~I~V~~lPp~~~~---e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~ 73 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPD---ELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHG 73 (104)
T ss_dssp CCCCEEEEESCCTTSCH---HHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSS
T ss_pred cCccEEEEECCCCCCCh---hHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecC
Confidence 345788 9999999999 9999999872 6888887653 3799999999999999988 5789999
Q ss_pred ceeEEeeccCCCC
Q 023632 91 AQVEVKKAEPKKP 103 (279)
Q Consensus 91 ~~i~V~~a~~~~~ 103 (279)
.+|.|....++..
T Consensus 74 ~~LsV~P~~~~~~ 86 (104)
T 2dhx_A 74 AQLSLRPAPPRAP 86 (104)
T ss_dssp SBCEEEECCCCCC
T ss_pred eEEEEEcCCCCCc
Confidence 9999987665543
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=2.8e-06 Score=64.26 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=64.7
Q ss_pred Ccee-eeCCCCCC-CcccH-HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 19 TQKM-TGLSLTPV-TEPAL-DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 19 ~~~l-V~nLp~~~-te~~~-~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.++| |.||+.+| +.+++ ++++++|.+|.++.....++.-. =..|.|.++++|.+|-.+||...|++++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3556 99999877 44555 68899999999998887775531 4579999999999999999999999999999
Q ss_pred eeccCCC
Q 023632 96 KKAEPKK 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
-++++..
T Consensus 79 YFgq~~~ 85 (104)
T 1wey_A 79 YFAQTLH 85 (104)
T ss_dssp ECCCCSS
T ss_pred EecCCCC
Confidence 9998543
No 212
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.19 E-value=3.2e-06 Score=65.61 Aligned_cols=79 Identities=11% Similarity=0.110 Sum_probs=58.7
Q ss_pred hhhhcCCCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCc
Q 023632 9 LTMFINRQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLE 87 (279)
Q Consensus 9 ~~~~~~~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~ 87 (279)
.+....+....+.| |-++|.+.+ +.|.++|++||+|+++.... ..-+-.|.|+++.+|++||.+ |+..
T Consensus 14 ~~l~~~~~~~~~wVtVFGFp~~~~----~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~k-NG~i 82 (119)
T 1wwh_A 14 DSLTSEDHLDDTWVTVFGFPQASA----SYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSK-DGRI 82 (119)
T ss_dssp -------CGGGGEEEEECCCGGGH----HHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTT-TTCE
T ss_pred cccCCCCCCCCCEEEEECCCHHHH----HHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHh-CCeE
Confidence 33333445566778 999998865 67888999999999987621 134899999999999999999 9999
Q ss_pred cCC-ceeEEeec
Q 023632 88 LAG-AQVEVKKA 98 (279)
Q Consensus 88 l~g-~~i~V~~a 98 (279)
|++ ..|-|++.
T Consensus 83 i~g~~mIGV~p~ 94 (119)
T 1wwh_A 83 FGESIMIGVKPC 94 (119)
T ss_dssp ETTTEECEEEEC
T ss_pred ecCCEEEEEEEC
Confidence 984 66777664
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.85 E-value=8e-05 Score=55.17 Aligned_cols=79 Identities=8% Similarity=0.103 Sum_probs=59.3
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCC--cccEEEEEEcCHHHHHHHHHHcCCCccCCc-----
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSR--SRGFGFITFDTEQAVDDLLAKGNKLELAGA----- 91 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~--~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~----- 91 (279)
++| |++||+.+|| +++.+.+....++.....+.-+.+.+ ...-|+|.|.+.|++...++.++++.+.+.
T Consensus 2 ~KvVIRrLPP~Lte---eeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~ 78 (91)
T 1uw4_A 2 SKVVIRRLPPTLTK---EQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEY 78 (91)
T ss_dssp CEEEEEEECTTCCH---HHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEE
T ss_pred cEEEEeCCCCCCCH---HHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEe
Confidence 456 9999999999 99999999887776666655443332 224699999999999999999999877543
Q ss_pred eeEEeeccCC
Q 023632 92 QVEVKKAEPK 101 (279)
Q Consensus 92 ~i~V~~a~~~ 101 (279)
+..|++|.-+
T Consensus 79 ~a~VE~AP~q 88 (91)
T 1uw4_A 79 PAIVEFAPFQ 88 (91)
T ss_dssp ECEEEECSSC
T ss_pred eeEEEEcCCC
Confidence 2356666433
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.80 E-value=4e-05 Score=57.14 Aligned_cols=56 Identities=11% Similarity=0.225 Sum_probs=46.6
Q ss_pred CCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 17 TTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 17 ~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
...+.| | .+|.++.. .||.++|+.|+. ..|+.+.|. .|||.|.+++.|..||+.++
T Consensus 14 ~r~HVf~l-~FP~ewKt---~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKT---SDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCSEEEE-ECCTTCCH---HHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhh---HHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 344566 7 99999999 999999999984 456667664 79999999999999999763
No 215
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.59 E-value=7.1e-05 Score=55.97 Aligned_cols=53 Identities=11% Similarity=0.208 Sum_probs=45.7
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
+.| | .+|.++.. .||.++|+.|+ -..|+.+.|. .|||.|.+++.|..||..++
T Consensus 7 HV~~l-~FP~ewKt---~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKT---SDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCH---HHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhh---HHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 456 7 99999999 99999999998 4567777774 79999999999999999764
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.34 E-value=0.00032 Score=52.36 Aligned_cols=78 Identities=6% Similarity=0.040 Sum_probs=52.4
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCc--ccEEEEEEcCHHHHHHHHHHcCCCccCCc----
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRS--RGFGFITFDTEQAVDDLLAKGNKLELAGA---- 91 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~--rG~aFV~F~s~e~a~~Ai~~lng~~l~g~---- 91 (279)
+.+| |+.||+.+|| ++|.+.+..+=++.-...+.-+.+.+. -.-|+|.|++.|++....+.++++.+.+.
T Consensus 9 ~~KvVIRrLPP~Lte---e~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 9 SHMVVIRRLPPGLTK---EQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCEEEECCCSCSCH---HHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred ceeEEEeCCCCCCCH---HHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 4456 9999999999 888887776544432222222222211 24589999999999999999998776543
Q ss_pred -eeEEeecc
Q 023632 92 -QVEVKKAE 99 (279)
Q Consensus 92 -~i~V~~a~ 99 (279)
+..|++|.
T Consensus 86 ~~a~VE~AP 94 (97)
T 2l08_A 86 YPAVVEFAP 94 (97)
T ss_dssp EEEEEEECC
T ss_pred eeeEEEecC
Confidence 34556553
No 217
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.28 E-value=0.00015 Score=56.98 Aligned_cols=75 Identities=17% Similarity=0.268 Sum_probs=55.4
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEE-EEEeec--------CCCCC-----cccEEEEEEcCHHHHHHHHHHcC
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQE-HQIMRD--------HSTSR-----SRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~-v~i~~d--------~~tg~-----~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
..| |-+.|++.++ .+.+.|++||.|++ +.+.++ +.+.+ ...+..|+|+++.+|++||.+ |
T Consensus 8 ~~VtVFGFp~~~~~----~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-N 82 (132)
T 3p3d_A 8 LAILVFGYPETMAN----QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-N 82 (132)
T ss_dssp CEEEEECCCGGGHH----HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-T
T ss_pred eEEEEEecCHHHHH----HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-C
Confidence 455 8899888774 67788999999876 222210 00111 245889999999999999999 9
Q ss_pred CCccCCceeEEeecc
Q 023632 85 KLELAGAQVEVKKAE 99 (279)
Q Consensus 85 g~~l~g~~i~V~~a~ 99 (279)
+..|++..|=|++..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999988887764
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.95 E-value=0.00055 Score=54.84 Aligned_cols=35 Identities=3% Similarity=0.002 Sum_probs=29.4
Q ss_pred EEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 50 EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 50 ~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
.++|+++.. +++||+||+|.++++|++||+.++..
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhccc
Confidence 467777754 68999999999999999999887653
No 219
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.49 E-value=0.0014 Score=52.11 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=37.9
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHHc-CCCccCCceeEEeeccCC
Q 023632 59 TSRSRGFGFITFDTEQAVDDLLAKG-NKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 59 tg~~rG~aFV~F~s~e~a~~Ai~~l-ng~~l~g~~i~V~~a~~~ 101 (279)
..+.+|+++|+|.++++|++||+++ |+.+|++ .|+|+++..+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 4577999999999999999999999 9999999 9999988653
No 220
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.34 E-value=0.0012 Score=62.63 Aligned_cols=55 Identities=15% Similarity=0.378 Sum_probs=41.4
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
.+.| |. +|.++++ ++|.++|++||+|.++.+.+++ .-||.|||.++++++++++.
T Consensus 53 ~rsv~v~-~~~~~~~---~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISE---NKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC------CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCH---HHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4667 86 7999999 9999999999999999887654 35999999999999988765
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.81 E-value=0.12 Score=49.64 Aligned_cols=54 Identities=11% Similarity=0.235 Sum_probs=44.2
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
...+ |. +|..|.. .+|+++|+.|+. .+|+.+.|. .|||.|.+.++|+.+++.++
T Consensus 440 ~~vl~v~-f~~~~~~---~~i~~~fs~fg~-v~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKT---SDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCH---HHHHHHGGGGCC-CEEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCH---HHHHHHHHhcCC-EEEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 3456 76 8889998 999999999995 456665553 79999999999999999875
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=88.58 E-value=0.77 Score=31.76 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=37.7
Q ss_pred HHHHHHHhcCC-----CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeecc
Q 023632 36 DEFKDFFMQFG-----DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 36 ~~L~~~F~~~G-----~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~ 99 (279)
.+|..++..-. .|-.|+|..+ |.||+-.. +.++++++.|+...+.+++|.|+.++
T Consensus 16 ~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 16 VDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp HHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred HHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 66666665443 3456776544 78998875 45778899999999999999998764
No 223
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=86.52 E-value=3.4 Score=30.08 Aligned_cols=68 Identities=13% Similarity=0.042 Sum_probs=47.9
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC-------CccC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK-------LELA 89 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng-------~~l~ 89 (279)
..+.| |-|||..+-. .++.-.....|---.|..+ .+-|.|.|.+.++...||++|-. ++|.
T Consensus 11 qnclikiinipqgtlk---aevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLK---AEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp CSCEEEEECCCTTCCH---HHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hCcEEEEEecCCCcee---eeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Confidence 45677 9999999888 7777666666654455544 24689999999999999987622 2445
Q ss_pred CceeEEe
Q 023632 90 GAQVEVK 96 (279)
Q Consensus 90 g~~i~V~ 96 (279)
++.+.|-
T Consensus 80 gqicdvi 86 (129)
T 4eyt_A 80 GQICDVI 86 (129)
T ss_dssp TEEEEEE
T ss_pred ceeeeee
Confidence 5555554
No 224
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=79.42 E-value=3.1 Score=27.75 Aligned_cols=56 Identities=2% Similarity=-0.146 Sum_probs=41.0
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
...+| |.++.-.--. ..|++.+.+ -.|..+.|-.. ...+.|+|++.+++.++|+.+
T Consensus 5 ~~~~~~v~gm~C~~C~---~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 5 EKIVLELSGLSCHHCV---ARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEEESSBCGGGH---HHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEEECCCCCHHHH---HHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHc
Confidence 34567 8888766666 788999988 77888877543 346778888777788888774
No 225
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=79.01 E-value=3.4 Score=30.47 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=42.1
Q ss_pred CCCCCCCcccHHHHHHHH-hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 25 LSLTPVTEPALDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
.++..++- +||.... +.||.-.++..+ +. -..|-..+.+|+++||+.|+-. ..-+.|+|-...++
T Consensus 23 ~f~RPv~f---~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKL---EDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCH---HHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred eccCCccH---HHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 34566676 6665433 567877777665 22 3578999999999999998643 33344555544444
No 226
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=71.31 E-value=14 Score=29.93 Aligned_cols=56 Identities=11% Similarity=0.146 Sum_probs=36.5
Q ss_pred ceeeeCCCCC---------CCcccHHHHHHHH--hcCCCeEEEEEeecCCCCCcccEEEEEEcC-HHHHHHHHH
Q 023632 20 QKMTGLSLTP---------VTEPALDEFKDFF--MQFGDVQEHQIMRDHSTSRSRGFGFITFDT-EQAVDDLLA 81 (279)
Q Consensus 20 ~~lV~nLp~~---------~te~~~~~L~~~F--~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s-~e~a~~Ai~ 81 (279)
..||.|+|.. .+. ++|++.| +.|.+++ |+.+.++ .-++++|.|+|.+ ..-...|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~---~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESG---SKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCS---HHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCH---HHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHH
Confidence 3448888862 233 6889977 8998866 4455553 2467899999974 444455544
No 227
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=69.38 E-value=16 Score=27.51 Aligned_cols=60 Identities=13% Similarity=0.047 Sum_probs=36.3
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHH----hcCCCeEEEEEeecCCCCCcccEE-EEEEcCHHHHHH
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFF----MQFGDVQEHQIMRDHSTSRSRGFG-FITFDTEQAVDD 78 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F----~~~G~V~~v~i~~d~~tg~~rG~a-FV~F~s~e~a~~ 78 (279)
.+-| +-.|..+++++++++|.+.| .+.-.|+++.+-++......--++ +++|+|.++.+.
T Consensus 21 I~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 21 IRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 3444 66788888884444444333 456678888887765432112234 468999988765
No 228
>2kpo_A Rossmann 2X2 fold protein; de novo designed, rossmann fold, NESG, GFT structural G PSI-2, protein structure initiative; NMR {Artificial gene}
Probab=69.37 E-value=1.8 Score=30.70 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=30.5
Q ss_pred CCcccHHHHHHHHhcCCCe-EEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 30 VTEPALDEFKDFFMQFGDV-QEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 30 ~te~~~~~L~~~F~~~G~V-~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
-|| ++|+++++.|-+- ..|+ .+|...+.+++++|.+..+..+|+-+.-+|
T Consensus 33 kte---delkkyleefrkesqnik-------------vlilvsndeeldkakelaqkmeidvrtrkv 83 (110)
T 2kpo_A 33 KTE---DELKKYLEEFRKESQNIK-------------VLILVSNDEELDKAKELAQKMEIDVRTRKV 83 (110)
T ss_dssp CSH---HHHHHHHHHHTSSTTSEE-------------EEEEESSHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ccH---HHHHHHHHHHHhhccCeE-------------EEEEEcChHHHHHHHHHHHhhceeeeeeec
Confidence 367 7888877766431 1222 234556778888888776666666554444
No 229
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=67.99 E-value=18 Score=27.22 Aligned_cols=62 Identities=11% Similarity=0.052 Sum_probs=37.9
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHH----hcCCCeEEEEEeecCCC-CCcccE---EEEEEcCHHHHHHHH
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFF----MQFGDVQEHQIMRDHST-SRSRGF---GFITFDTEQAVDDLL 80 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F----~~~G~V~~v~i~~d~~t-g~~rG~---aFV~F~s~e~a~~Ai 80 (279)
.+-| +-.|..+++++++++|++.| .+.-.|+++.+-++... ...++| ..++|+|.++.+.-+
T Consensus 21 i~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 21 LYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp EEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 3444 66888888874343443333 34567888887776542 333443 346899998887644
No 230
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=65.69 E-value=11 Score=28.18 Aligned_cols=60 Identities=8% Similarity=0.056 Sum_probs=37.0
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhc----CCCeEEEEEeecCCCCCcccE---EEEEEcCHHHHHHHH
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQ----FGDVQEHQIMRDHSTSRSRGF---GFITFDTEQAVDDLL 80 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~----~G~V~~v~i~~d~~tg~~rG~---aFV~F~s~e~a~~Ai 80 (279)
+.| +-.|..+++++++++|++.|+. .-.|+++.+-++.. ...++| ..++|+|.++.+.-+
T Consensus 23 ~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~ 90 (116)
T 3bgu_A 23 RHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQ 90 (116)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHh
Confidence 444 6678888888445555555543 34567777776653 333333 346888988876543
No 231
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=64.23 E-value=21 Score=23.27 Aligned_cols=57 Identities=5% Similarity=0.031 Sum_probs=39.3
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHHc
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 83 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~a~~Ai~~l 83 (279)
...+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 8 ~~~~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 69 (79)
T 1kvi_A 8 NSVTISVEGMTCNSCV---WTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 69 (79)
T ss_dssp EEEEEEECCCCSTTTH---HHHHHHHHHSSSCCCEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCccCHHHH---HHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 34567 8888776666 788888888777777766544 2367788863 46667777764
No 232
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=63.45 E-value=15 Score=23.90 Aligned_cols=55 Identities=9% Similarity=0.128 Sum_probs=39.1
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
.+| |.++.-.--. ..|++.+.+.-.|.++.+-.. ..-+.|+|+ +.+++.++|+.+
T Consensus 4 ~~~~v~gm~C~~C~---~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 4 IQVGVTGMTCAACS---NSVEAALMNVNGVFKASVALL------QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEECCCSHHHH---HHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHH---HHHHHHHhcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 456 7777655445 788899988878888877554 236788885 567777888774
No 233
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=61.74 E-value=20 Score=25.62 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=26.0
Q ss_pred eEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 48 VQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 48 V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
|.+|.++. ..+||-||+++..+++..+|+.+.+
T Consensus 40 i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 66666653 2789999999999999888887654
No 234
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=60.23 E-value=8.5 Score=27.97 Aligned_cols=63 Identities=10% Similarity=0.071 Sum_probs=38.0
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCC---eEEEEEeecCCCCCcccEEEEEEc--CHHHHHHHHHHcCC
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGD---VQEHQIMRDHSTSRSRGFGFITFD--TEQAVDDLLAKGNK 85 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~---V~~v~i~~d~~tg~~rG~aFV~F~--s~e~a~~Ai~~lng 85 (279)
..+.| |.-....+.+ -.|.++.++|+. |....|-. ..+.+-|.-+|++. +.+++++|++.|..
T Consensus 19 ~~~lvrL~f~g~~~~~---PvIs~l~~~~~v~vnIL~g~I~~--i~~~~~G~L~v~l~G~~~~~~~~ai~~L~~ 87 (98)
T 3ced_A 19 DAYIVRLVFAGSTTTE---PIVSSLSTAYDIKINILEANIKN--TKNGTVGFLVLHIPYISSVDFGKFEKELIE 87 (98)
T ss_dssp TCEEEEEEEEEESCHH---HHHHHHHHHHTCCCEEEEEEEEE--ETTEEEEEEEEEESCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCccCc---hHHHHHHHHHCCcEEEEEEEeEE--eCCEeEEEEEEEEeCCCHHHHHHHHHHHHH
Confidence 34455 6655555666 556666666654 33323322 13456688889888 47788899988743
No 235
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=64.52 E-value=1.8 Score=32.35 Aligned_cols=63 Identities=3% Similarity=0.060 Sum_probs=36.3
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEE--EEEEcCHHHHHHHHHHcCC
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFG--FITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~a--FV~F~s~e~a~~Ai~~lng 85 (279)
......+| |..+ .++ ++|++|..+.. +..+.|.+....++.. |. +=.|.|.++|++||+.|..
T Consensus 21 ~p~~~YTLQL~a~---~~~---~~l~~f~~~~~-l~~~~v~~t~rnGk~W-yvVlyG~Y~s~~~A~~A~~~LP~ 86 (106)
T 2lfv_A 21 APSSHYTLQLSSS---SNY---DNLNGWAKKEN-LKNYVVYETTRNGQPW-YVLVSGVYASKEEAKKAVSTLPA 86 (106)
Confidence 33444555 5433 234 56777766664 4556555433233321 22 2268999999999999854
No 236
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=59.84 E-value=44 Score=25.36 Aligned_cols=47 Identities=15% Similarity=0.235 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
++++.+.+.++-+|.+|..+. +...=++.|.+.|.+++++.++.+..
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~t----G~~d~~~~v~~~~~~~l~~~~~~l~~ 124 (144)
T 2cfx_A 78 YERFKSYIQTLPNIEFCYRIA----GAACYMLKINAESLEAVEDFINKTSP 124 (144)
T ss_dssp HHHHHHHHHTCTTEEEEEEEE----SSSSEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcChhhheeeeee----CCCCEEEEEEECCHHHHHHHHHHhcC
Confidence 377888889999999998764 33445788999999999999988754
No 237
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=59.33 E-value=19 Score=27.01 Aligned_cols=59 Identities=8% Similarity=0.055 Sum_probs=35.7
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHh---cCCCeEEEEEeecCCC----CCcccE--E-EEEEcCHHHHHH
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFM---QFGDVQEHQIMRDHST----SRSRGF--G-FITFDTEQAVDD 78 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~---~~G~V~~v~i~~d~~t----g~~rG~--a-FV~F~s~e~a~~ 78 (279)
+-| +-.|..+++++++++|++.|+ +.-.|+++.+-.+..+ ...++| + +++|+|.++.+.
T Consensus 22 ~HIVlfklK~~~~~~~~~~~~~~l~~L~~Ip~i~~~~vG~~~s~e~R~~~~~g~d~~l~~~F~s~edl~~ 91 (120)
T 3bn7_A 22 FHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQQLHVGVPAATEKRDVVDNSYDVSELMVFKSVEDQKR 91 (120)
T ss_dssp EEEEEEEESSTTCHHHHHHHHHHHHGGGGSTTCSEEEEECCCCCCCCTTCCCCCSEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHhccCCCCeEEEEEccCCCcccccccCCCccEEEEEEECCHHHHHH
Confidence 344 667888888854555555554 3445667777666543 223443 3 468999888765
No 238
>1mli_A Muconolactone isomerase; intramolecular oxidoreductase; 3.30A {Pseudomonas putida} SCOP: d.58.4.1
Probab=57.84 E-value=50 Score=24.05 Aligned_cols=68 Identities=10% Similarity=0.081 Sum_probs=46.5
Q ss_pred eCCCCCCCcccHHHHHH-------HHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 24 GLSLTPVTEPALDEFKD-------FFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 24 ~nLp~~~te~~~~~L~~-------~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
-+||.+++.+++++|++ .+.+-|++..+.-+ .++-+-++++.-+|.+++.+.|..|.-..+. +|+|.
T Consensus 9 V~~P~~~~~~~~~~~~a~Eka~a~eLq~~G~~~~lWRv----~G~y~nisIfdv~s~~eLh~iL~~LPLfpym--~i~Vt 82 (96)
T 1mli_A 9 VKLPVDMDPAKATQLKADEKELAQRLQREGTWRHLWRI----AGHYANYSVFDVPSVEALHDTLMQLPLFPYM--DIEVD 82 (96)
T ss_pred eeCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeEEEEEe----cCCccEEEEEEcCCHHHHHHHHHhCCCCceE--EEEEE
Confidence 37888888744444443 23455888887554 4555668888889999999999988655433 56665
Q ss_pred e
Q 023632 97 K 97 (279)
Q Consensus 97 ~ 97 (279)
.
T Consensus 83 p 83 (96)
T 1mli_A 83 G 83 (96)
T ss_pred E
Confidence 3
No 239
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=57.18 E-value=27 Score=25.56 Aligned_cols=61 Identities=15% Similarity=0.213 Sum_probs=36.6
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHh----cCCCeEEEEEeecCCC-CCcccE---EEEEEcCHHHHHHHH
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFM----QFGDVQEHQIMRDHST-SRSRGF---GFITFDTEQAVDDLL 80 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~----~~G~V~~v~i~~d~~t-g~~rG~---aFV~F~s~e~a~~Ai 80 (279)
+.| +-.|..++++++++++++.|. +.-.|+++.+-++... ...++| ..++|+|.++.+.-+
T Consensus 12 ~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 344 667888888844433443332 3456777777766543 233443 456899999887643
No 240
>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}
Probab=57.05 E-value=23 Score=22.33 Aligned_cols=55 Identities=9% Similarity=0.068 Sum_probs=36.3
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
.+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 7 ~~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 66 (71)
T 2l3m_A 7 LTLQVEGMSCGHCV---NAIESSVKELNGVEQVKVQLA------EGTVEVTIDSSVVTLKDIVAVIEDQ 66 (71)
T ss_dssp EEEEEECCCSHHHH---HHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTSCHHHHHHHHHHT
T ss_pred EEEEECCccCHHHH---HHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 456 8777654444 678888888877888776543 235778876 345666667663
No 241
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=56.62 E-value=26 Score=25.26 Aligned_cols=63 Identities=8% Similarity=-0.071 Sum_probs=38.5
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEe-ecCCCCCcccEEEEEEc-CHHHHHHHHHHcCC
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIM-RDHSTSRSRGFGFITFD-TEQAVDDLLAKGNK 85 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~-~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~lng 85 (279)
+.| |.-....+++ -.|.++..+|+.-.+|.-- .+...+.+-|.-+|++. +.+++++|++.|..
T Consensus 24 ~lv~l~f~g~~~~~---pvis~l~~~~~v~vnIl~g~i~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 89 (101)
T 2qrr_A 24 PLVRMEFTGATVDA---PLMSQISRKYNIDVSILSSDLDYAGGVKFGMMVAELFGNEQDDSAAIEYLRE 89 (101)
T ss_dssp EEEEEEECTTSCSS---CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCcCc---hHHHHHHHHhCCCEEEEEeeeeEcCCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 355 7766666777 5677777788753332111 01123456688888887 46677888887743
No 242
>2ofg_X Zinc-transporting ATPase; ferredoxin-like fold, beta-alpha-beta-BETA-alpha-beta, struc genomics, hydrolase, membrane protein; NMR {Synechocystis SP} PDB: 2ofh_X
Probab=56.28 E-value=31 Score=24.90 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=39.7
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHHc
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 83 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~a~~Ai~~l 83 (279)
..+| |.++.-..-. ..|++.+.+.-.|.++.|... ...+.|+|+. .+++.++|+.+
T Consensus 9 ~~~l~v~Gm~C~~Ca---~~Ie~~L~~~~GV~~v~v~~~------~~~~~V~~~~~~~~~~~i~~~i~~~ 69 (111)
T 2ofg_X 9 TQQMQVGGMDCTSCK---LKIEGSLERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAAL 69 (111)
T ss_dssp EEEEEESCCCGGGTH---HHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTTCSHHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHH---HHHHHHHHcCCCeeEEEEECC------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3567 8888766666 789999988877888877544 2367888873 45666677664
No 243
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=55.10 E-value=45 Score=22.46 Aligned_cols=48 Identities=10% Similarity=0.129 Sum_probs=29.8
Q ss_pred HHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 36 DEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 36 ~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
.+|.++|.+.+ .|.++.+.... ....-...|+..+.+.+++++++|..
T Consensus 20 ~~I~~~la~~~inI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~ 68 (88)
T 2ko1_A 20 NQITGVISKFDTNIRTIVLNAKD--GIFTCNLMIFVKNTDKLTTLMDKLRK 68 (88)
T ss_dssp HHHHHHHTTSSSCEEEEEEEECS--SEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHCCCCeEEEEEEEcC--CEEEEEEEEEECCHHHHHHHHHHHhc
Confidence 67888888775 57777765432 11111122345678888888888753
No 244
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=54.68 E-value=37 Score=24.31 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=34.5
Q ss_pred eeCCCCCCCcccHHHHHHHH----hcCCCeEEEEEeecCCCCCcccE---EEEEEcCHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFF----MQFGDVQEHQIMRDHSTSRSRGF---GFITFDTEQAVDD 78 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F----~~~G~V~~v~i~~d~~tg~~rG~---aFV~F~s~e~a~~ 78 (279)
+-.|..+++++++++|++.| .+.-.|+++.+-++.. ...++| ..++|+|.++.+.
T Consensus 10 lfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 10 MMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 55677888874344443333 3466788888877753 333443 3468999988765
No 245
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=54.18 E-value=45 Score=22.15 Aligned_cols=56 Identities=11% Similarity=0.057 Sum_probs=40.0
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
..+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 10 ~~~~~v~gm~C~~C~---~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 70 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCT---STIEGKIGKLQGVQRIKVSLD------NQEATIVYQPHLISVEEMKKQIEAM 70 (84)
T ss_dssp EEEEEECCTTTCSSC---HHHHHHHHTCTTEEEEEECST------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEEEECCcccHHHH---HHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 3557 8888776666 789999998888888877543 236788885 456667777764
No 246
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=53.55 E-value=0.81 Score=42.81 Aligned_cols=14 Identities=7% Similarity=0.055 Sum_probs=7.3
Q ss_pred HHHHHhcCCCeEEE
Q 023632 38 FKDFFMQFGDVQEH 51 (279)
Q Consensus 38 L~~~F~~~G~V~~v 51 (279)
|.++|.++++|..|
T Consensus 9 L~~lF~p~pPl~~~ 22 (437)
T 3pgw_S 9 LLALFAPRDPIPYL 22 (437)
T ss_pred HHHhcCCCCCCcCC
Confidence 44455555555544
No 247
>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}
Probab=53.03 E-value=52 Score=22.52 Aligned_cols=57 Identities=7% Similarity=0.040 Sum_probs=38.8
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHHc
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 83 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~a~~Ai~~l 83 (279)
...+| |.++.-.... ..|++.+...-.|..+.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 16 ~~~~~~v~gm~C~~C~---~~ie~~l~~~~GV~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 77 (95)
T 2kkh_A 16 QKSYFDVLGICCTSEV---PIIENILKSLDGVKEYSVIVP------SRTVIVVHDSLLISPFQIAKALNEA 77 (95)
T ss_dssp EEEEEEETTCCTTTTH---HHHHHHHHHSSSEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEEECCcCCHHHH---HHHHHHHhcCCCeeEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 34567 8888766666 778888888877887776543 2367788863 45666677664
No 248
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=52.05 E-value=31 Score=24.74 Aligned_cols=53 Identities=4% Similarity=-0.086 Sum_probs=30.8
Q ss_pred eeCCCCCCCcccHHHHHHHHh-cCC--CeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 23 TGLSLTPVTEPALDEFKDFFM-QFG--DVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~-~~G--~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+-.+|.+++- ++|.+.+. .|. .-..+.|...-+.+. +|++.|.++++.||..+
T Consensus 19 ~~~v~~~i~~---~~L~~kv~~~~~~~~~~~f~lky~DEeGD-----~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 19 ITHFEPSISF---EGLCNEVRDMCSFDNEQLFTMKWIDEEGD-----PCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEECTTCCH---HHHHHHHHHHTTCCSSCCEEEEECCSSSC-----CEECCSHHHHHHHHHHH
T ss_pred EEECCCCCCH---HHHHHHHHHHhCCCCCCeEEEEEECCCCC-----cccccCHHHHHHHHHHH
Confidence 5556778887 55544332 222 112233332212233 58999999999999964
No 249
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=51.19 E-value=43 Score=21.06 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=37.8
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
..+| |.++.-.... ..|++.+.+.-.|..+.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 7 ~~~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 67 (76)
T 1opz_A 7 EIAMQVSGMTCAACA---ARIEKGLKRMPGVTDANVNLA------TETVNVIYDPAETGTAAIQEKIEKL 67 (76)
T ss_dssp EEEEEEESCCSTTHH---HHHHHHHHTSTTEEEEEEEGG------GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHH---HHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 3457 8888766555 678888888877887776543 235678885 345666666653
No 250
>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}
Probab=50.69 E-value=40 Score=20.56 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=34.9
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHHc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~---s~e~a~~Ai~~l 83 (279)
+| |.++.-..-. ..|++.+.+.-.|..+.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 4 ~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 61 (66)
T 1yg0_A 4 TFQVPSITCNHCV---DKIEKFVGEIEGVSFIDVSVE------KKSVVVEFDAPATQDLIKEALLDA 61 (66)
T ss_dssp EECCTTCSCSHHH---HHHHHHHTTSSSEEEEEEETT------TTEEEEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCcccHHHH---HHHHHHHhcCCCceEEEEEcC------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 35 6666544444 678888888877888776543 235678876 456666676654
No 251
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=50.11 E-value=70 Score=24.32 Aligned_cols=46 Identities=11% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcC
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ln 84 (279)
++++.+.+.++-+|.+|..+ ++...=++.|.+.|.++.++.++.+.
T Consensus 80 ~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~~~~l~ 125 (151)
T 2cyy_A 80 YSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLIG 125 (151)
T ss_dssp HHHHHHHHHTCTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeeEeeEe----cCCCCEEEEEEECCHHHHHHHHHHHh
Confidence 37888999999999999875 45555678899999999999886653
No 252
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=49.70 E-value=34 Score=24.56 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=41.3
Q ss_pred CCCCCCcccHHHHHHHH-hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeeccCC
Q 023632 26 SLTPVTEPALDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAEPK 101 (279)
Q Consensus 26 Lp~~~te~~~~~L~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~~~ 101 (279)
++..++- ++|+... ..||.-.++..+.+ .-.|-..+.+++++||+.|+.. ..-+.|+|-...++
T Consensus 20 f~RPvkf---~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs-~~mkSLRIlL~~~~ 84 (94)
T 2jrh_A 20 FSRPVKY---EDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRS-SSMKSLRILLLSQD 84 (94)
T ss_dssp ECSSCCH---HHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHS-TTTTEEEEEEEECS
T ss_pred cCCCccH---HHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccC-ccccceEEEEEcCC
Confidence 4556666 6665544 56888788766633 2468889999999999997532 23344555544443
No 253
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=49.40 E-value=16 Score=27.24 Aligned_cols=48 Identities=8% Similarity=0.111 Sum_probs=26.4
Q ss_pred CCCCcccHHHHHHHHhc-CCC---eEEE-EEeecCCCCCcccEEEEEEcCHHHHHHH
Q 023632 28 TPVTEPALDEFKDFFMQ-FGD---VQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~~-~G~---V~~v-~i~~d~~tg~~rG~aFV~F~s~e~a~~A 79 (279)
.+++. .+|++.+.+ |.. ++-| .|.+.--.+++.+||.| |+|.+.|++.
T Consensus 37 ~tpsk---~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk~ 89 (107)
T 2v94_A 37 PTPSR---KDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLYI 89 (107)
T ss_dssp CCCCH---HHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 35556 666655533 322 2222 23333335677888864 8888877653
No 254
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=48.66 E-value=22 Score=27.04 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=42.4
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE--cCHHHHHHHHHHcC-------C---C
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF--DTEQAVDDLLAKGN-------K---L 86 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F--~s~e~a~~Ai~~ln-------g---~ 86 (279)
-.| |.++|+.+..+.-++.+.+-..|-.-+...|+-. -.+.-.|.| ++.|+.++||++|- + .
T Consensus 43 l~i~itgvpeqvrkelakeaerl~~efni~v~y~imgs-----gsgvm~i~f~gddlea~ekalkemirqarkfagtvty 117 (170)
T 4hhu_A 43 LVIVITGVPEQVRKELAKEAERLKAEFNINVQYQIMGS-----GSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTY 117 (170)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHHHHHHTCEEEEEEECT-----TCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHHhcceEEEEEEEeC-----CceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEE
Confidence 445 8899988775111222223334444444555532 245667777 48899999998752 1 2
Q ss_pred ccCCceeEEee
Q 023632 87 ELAGAQVEVKK 97 (279)
Q Consensus 87 ~l~g~~i~V~~ 97 (279)
.|++..|+|..
T Consensus 118 tl~gn~l~i~i 128 (170)
T 4hhu_A 118 TLSGNRLVIVI 128 (170)
T ss_dssp EECSSEEEEEE
T ss_pred EEeCCEEEEEE
Confidence 45666666654
No 255
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=48.36 E-value=46 Score=24.05 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=34.9
Q ss_pred eeCCCCCCCcccHHHHHHHH----hcCCCeEEEEEeecCCC---CCcccE---EEEEEcCHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFF----MQFGDVQEHQIMRDHST---SRSRGF---GFITFDTEQAVDDL 79 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F----~~~G~V~~v~i~~d~~t---g~~rG~---aFV~F~s~e~a~~A 79 (279)
+-.|..+++++++++|++.| .+.-.|+++.+-.+... ...++| ..++|+|.++.+.-
T Consensus 14 lfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y 80 (108)
T 1tr0_A 14 LTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQEY 80 (108)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHHH
Confidence 66788888884443343333 34566778877766532 333443 34689999887653
No 256
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=48.33 E-value=39 Score=24.58 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=36.5
Q ss_pred CCCCCCCcccHHHHHHHH-hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 25 LSLTPVTEPALDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
-++..+.- ++|+... ..||.-.++..+.+ .-.|-..+.+++++||+.|+.
T Consensus 35 ~f~RPv~f---~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 35 QFPRPVKL---EDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp EECSSCCH---HHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred ecCCCccH---HHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 35666776 6666544 56888888776644 357888999999999999753
No 257
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=47.61 E-value=48 Score=20.54 Aligned_cols=55 Identities=9% Similarity=0.078 Sum_probs=35.5
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s---~e~a~~Ai~~l 83 (279)
.+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 5 ~~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 5 INLQLEGMRCAACA---SSIERAIAKVPGVQSCQVNFA------LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEECCCSHHHH---HHHHHHHHTSTTEEEEEEETT------TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEECCcccHHHH---HHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCCCHHHHHHHHHHc
Confidence 346 7777654444 678888888878888877544 2367788863 44555666553
No 258
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=46.85 E-value=24 Score=34.54 Aligned_cols=56 Identities=16% Similarity=0.174 Sum_probs=39.7
Q ss_pred eCCCCCCCcccHHHHHHHHh----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 24 GLSLTPVTEPALDEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 24 ~nLp~~~te~~~~~L~~~F~----~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
..++.+.+- -||+.+|- .+|.|+++.|...+.. +.+-+++|.|.|.++|.+|+..+
T Consensus 349 ~~~~k~~aG---yDL~~L~iGSEGTLGIITeatLrL~P~P-~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 349 CQGPRMSTG---PDIHHFIMGSEGTLGVITEATIKIRPTP-EYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCCSSCCSS---SCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccccCCC---cCHHHHhccCCCcCcceeeeeeeeccCC-ccccccccccCCchhhhhhHHHH
Confidence 345555555 57888883 6788988877655432 33557899999999999988765
No 259
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=46.59 E-value=53 Score=20.79 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=37.2
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC--HHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT--EQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s--~e~a~~Ai~~l 83 (279)
.+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 5 ~~~~v~gm~C~~C~---~~ie~~l~~~~gV~~~~v~~~------~~~~~v~~~~~~~~~i~~~i~~~ 62 (73)
T 1mwy_A 5 YSWKVSGMDCAACA---RKVENAVRQLAGVNQVQVLFA------TEKLVVDADNDIRAQVESALQKA 62 (73)
T ss_dssp EEEEEESCCSTTHH---HHHHHHHHTSSSEEEEEEETT------TTEEEEEESSCCHHHHHHHHHHH
T ss_pred EEEEECCcCCHHHH---HHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCHHHHHHHHHHc
Confidence 356 8887665555 678888888877888877544 2367788875 44556666654
No 260
>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A
Probab=46.37 E-value=51 Score=20.46 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=35.0
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC---HHHHHHHHHH
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT---EQAVDDLLAK 82 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s---~e~a~~Ai~~ 82 (279)
+| |.++.-..-. ..|++.+.+.-.|.++.+-... ..+.|+|+. .+++.++|+.
T Consensus 3 ~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 59 (69)
T 2kt2_A 3 HLKITGMTCDSCA---AHVKEALEKVPGVQSALVSYPK------GTAQLAIVPGTSPDALTAAVAG 59 (69)
T ss_dssp CEEEESSCSTHHH---HHHHHHHHHSTTEEEEEEETTT------TEEEEEECTTSCHHHHHHHHHT
T ss_pred EEEECCcccHHHH---HHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCHHHHHHHHHH
Confidence 45 7777554445 6788888888778888775442 356778764 4556666665
No 261
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=44.77 E-value=36 Score=27.54 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=28.9
Q ss_pred ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 33 PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 33 ~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
..|++|++||+.|=.++ .+ |-+.+..|.++++|.+.|++.
T Consensus 130 ~~l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 130 MLKKRIVHFFEHYKDLE---------KG--KWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp HHHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcc---------CC--CcEEEccCcCHHHHHHHHHHH
Confidence 34488999999984322 12 236778899999999998863
No 262
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=43.87 E-value=76 Score=24.59 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+++.+.+.++-+|.+|..+ |+...=++.|.+.|.++.++.+..+
T Consensus 80 ~~~~~~l~~~peV~~~~~v----tG~~D~~l~v~~~d~~~l~~~l~~~ 123 (162)
T 3i4p_A 80 KRFSEVVSEFPEVVEFYRM----SGDVDYLLRVVVPDIAAYDAFYKRM 123 (162)
T ss_dssp HHHHHHHHHCTTEEEEEEC----CSSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEEEeeec----CCCCCEEEEEEECCHHHHHHHHHHH
Confidence 6778888899999999875 4555567889999999998887653
No 263
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=43.45 E-value=59 Score=20.40 Aligned_cols=55 Identities=4% Similarity=0.033 Sum_probs=37.1
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHH
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 82 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~a~~Ai~~ 82 (279)
..+| |.++.-.... ..|++.+.+.-.|..+.+-.. ...+.|+|+. .+++.++|+.
T Consensus 5 ~~~~~v~gm~C~~c~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 5 VLELVVRGMTCASCV---HKIESSLTKHRGILYCSVALA------TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CEEEEEETCCTTTHH---HHHHHHHTTSTTEEEEEEETT------TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHH---HHHHHHHHcCCCEEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467 8888766556 778888888877888877543 2367788864 3445555555
No 264
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=43.14 E-value=28 Score=23.92 Aligned_cols=55 Identities=4% Similarity=0.036 Sum_probs=36.9
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
.+| |.++.-..-. ..|++.+.+.-.|.++.|-... ..+.|+|+ +.+++.++|+.+
T Consensus 5 ~~l~v~Gm~C~~C~---~~Ie~~L~~~~GV~~v~v~l~~------~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 5 ATFIIDGMHCKSCV---SNIESTLSALQYVSSIVVSLEN------RSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEESCCHHHHH---HHHHHHHTTCTTEEEEEEETTT------TEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEECCcCCHHHH---HHHHHHHHcCCCeeEEEEEccC------CEEEEEECCCCCCHHHHHHHHHhc
Confidence 346 7776554444 6788888888788888775442 36788885 345666677664
No 265
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=42.88 E-value=32 Score=25.39 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=35.3
Q ss_pred CCCCCCCcccHHHHHHHH-hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCC
Q 023632 25 LSLTPVTEPALDEFKDFF-MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNK 85 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F-~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng 85 (279)
-++..++- ++|+... ..||.-.++..+.+ .-.|-..+.+++++||+.|+.
T Consensus 46 qf~RPvkf---~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDr 96 (111)
T 2c60_A 46 AFSRPVKY---EDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDR 96 (111)
T ss_dssp EECSSCCH---HHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHH
T ss_pred ecCCCccH---HHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhcc
Confidence 35666666 6666544 56787777766633 246788899999999999753
No 266
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=42.13 E-value=28 Score=22.12 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=36.9
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHH
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAK 82 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~---s~e~a~~Ai~~ 82 (279)
.+| |.++.-.--. ..|++.+.+.-.|.++.+-... .-+.|+|+ +.+++.++|+.
T Consensus 4 ~~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~~------~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCA---SSIERAIAKVPGVQSCQVNFAL------EQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHH---HHHHHHHHTSTTEEEEEEETTT------TEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHH---HHHHHHHhcCCCeEEEEEEecC------CEEEEEECCCCCHHHHHHHHHH
Confidence 345 7777655555 7888999988888888775542 35678874 45666677766
No 267
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=42.13 E-value=14 Score=33.53 Aligned_cols=57 Identities=21% Similarity=0.188 Sum_probs=36.8
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELA 89 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~ 89 (279)
|+||..-........|.++.++||+|..++|... -+|...+++.+++++.. +...+.
T Consensus 21 iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g~~---------~~vvv~~p~~i~~vl~~-~~~~f~ 77 (479)
T 3tbg_A 21 LGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLAWT---------PVVVLNGLAAVREALVT-HGEDTA 77 (479)
T ss_dssp TBTGGGCCTTSHHHHHHHHHHHHCSEEEEEETTE---------EEEEEEHHHHHHHHHTT-TGGGSC
T ss_pred ccchHhhcCCCHHHHHHHHHHHhCCEEEEEECCe---------eEEEECCHHHHHHHHHh-CChhhc
Confidence 7887644332112567888899999988876432 24666788888888754 333343
No 268
>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1
Probab=41.99 E-value=58 Score=19.90 Aligned_cols=53 Identities=6% Similarity=0.088 Sum_probs=35.4
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHH
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAK 82 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~ 82 (279)
+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.
T Consensus 3 ~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 60 (68)
T 1cpz_A 3 EFSVKGMSCNHCV---ARIEEAVGRISGVKKVKVQLK------KEKAVVKFDEANVQATEICQAINE 60 (68)
T ss_dssp EEEESCCCSSSHH---HHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHT
T ss_pred EEEECCeeCHHHH---HHHHHHHHcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 45 7777655555 678888888877888776543 236778886 34556666665
No 269
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=41.81 E-value=76 Score=25.00 Aligned_cols=45 Identities=11% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++++.+.+.++-+|.+|..+ ++...=++.|.+.|.++.++.++.+
T Consensus 100 ~~~v~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~l~~l 144 (171)
T 2e1c_A 100 YSEVASNLAKYPEIVEVYET----TGDYDMVVKIRTKNSEELNNFLDLI 144 (171)
T ss_dssp HHHHHHHHHTSTTEEEEEEC----SSSSSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcCeEEEEEe----eCCCCEEEEEEECCHHHHHHHHHHH
Confidence 37888899999999999875 4555567889999999999888655
No 270
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=41.32 E-value=33 Score=24.51 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=21.6
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITFDT 72 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F~s 72 (279)
+|++|+|..-...++-++||-|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887776678899999999985
No 271
>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A
Probab=41.26 E-value=63 Score=20.07 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=37.2
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
.+| |.++.-.... ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 5 ~~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1osd_A 5 VTLSVPGMTCSACP---ITVKKAISKVEGVSKVDVTFE------TRQAVVTFDDAKTSVQKLTKATADA 64 (72)
T ss_dssp EEEECTTCCSTTHH---HHHHHHHHTSTTEEEEEEETT------TTEEEEEEETTTCCHHHHHHHHHHT
T ss_pred EEEEECCeEcHHHH---HHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 346 7777655555 678888888878888876543 236778885 345667777764
No 272
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=41.10 E-value=20 Score=25.84 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=36.2
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEE---EEeecCCCCCcccEEEEEEc-CHHHHHHHHHHcC
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEH---QIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKGN 84 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v---~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~ln 84 (279)
+.| |.-....+++ -.|.++..+|+.-.+| .|-. ..+.+-|.-+|++. +.+++++|++.|.
T Consensus 24 ~lv~l~f~g~~~~~---pvis~l~~~~~v~vnIl~g~i~~--i~~~~~G~L~v~l~G~~~~~~~ai~~L~ 88 (100)
T 2qsw_A 24 KIVRLLFHGEQAKL---PIISHIVQEYQVEVSIIQGNIQQ--TKQGAVGSLYIQLLGEEQNILAAIEGLR 88 (100)
T ss_dssp EEEEEEEESCSCSS---CHHHHHHHHHTCEEEEEEEEEEE--ETTEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCcCc---hHHHHHHHHhCCCEEEEEeeceE--cCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 355 6655666677 4566666666643322 2221 13456678888887 4667888888774
No 273
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=40.59 E-value=51 Score=24.12 Aligned_cols=32 Identities=9% Similarity=0.251 Sum_probs=20.9
Q ss_pred EEEEEEcCHHHHHH---HHHHcCCCccCCceeEEe
Q 023632 65 FGFITFDTEQAVDD---LLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 65 ~aFV~F~s~e~a~~---Ai~~lng~~l~g~~i~V~ 96 (279)
.-.|.|....+-++ |..+....+..+.+|++.
T Consensus 64 hIIvK~~~~~~KErILkaar~k~~vtykg~pirls 98 (100)
T 2w7a_A 64 HIIVRFTKVEMKEKMLRAAREKGRVTLKGKPIRLT 98 (100)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHCCEEETTEEEEEE
T ss_pred eEEEEecccccHHHHHHHHHHhCceeeCCcceeec
Confidence 56778876655444 444445577888888875
No 274
>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A
Probab=40.38 E-value=68 Score=20.25 Aligned_cols=54 Identities=7% Similarity=0.044 Sum_probs=35.7
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 5 ~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (75)
T 3cjk_B 5 TISVEGMTCNSCV---WTIEQQIGKVNGVHHIKVSLE------EKNATIIYDPKLQTPKTLQEAIDDM 63 (75)
T ss_dssp EEEECCCCSHHHH---HHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCccCHHHH---HHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45 6666544444 678888888877888876544 236778885 346667777764
No 275
>2e7g_A Putative ribosome-binding factor A; RBFA, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.52.7.1
Probab=40.06 E-value=38 Score=25.80 Aligned_cols=35 Identities=9% Similarity=-0.046 Sum_probs=20.7
Q ss_pred CCCeEEEEEeecCCCCCcccEEEEE-EcCHHHHHHHHHHc
Q 023632 45 FGDVQEHQIMRDHSTSRSRGFGFIT-FDTEQAVDDLLAKG 83 (279)
Q Consensus 45 ~G~V~~v~i~~d~~tg~~rG~aFV~-F~s~e~a~~Ai~~l 83 (279)
+=.|++|+|..|.. ....||+ |-+.++.+.+++.|
T Consensus 43 ~vtVt~V~vS~Dl~----~AkVyvs~~~~~~~~~~~~~~L 78 (129)
T 2e7g_A 43 NVELSKVSLTPDFS----ACRAYWKTTLSAEQNAHMEAVL 78 (129)
T ss_dssp TCCEEEEEECTTSC----CEEEEECCCSCHHHHHHHHHHH
T ss_pred eeEEEEEEECCCCc----EEEEEEEecCChhhHHHHHHHH
Confidence 45789999977742 3345666 55555544444433
No 276
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=39.73 E-value=48 Score=26.79 Aligned_cols=40 Identities=5% Similarity=0.238 Sum_probs=28.7
Q ss_pred ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 33 PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 33 ~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
..|++|++||+.|=.++ .+ |-+.+..|.+.++|.+.|++.
T Consensus 126 ~~l~~i~~fF~~YK~le---------~g--K~v~~~gw~~~~~A~~~I~~~ 165 (173)
T 1qez_A 126 ATKNKIVHFFEHYKELE---------PG--KYVKISGWGSATEAKNRIQLA 165 (173)
T ss_dssp HHHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc---------CC--CceEEccccCHHHHHHHHHHH
Confidence 34478999999984322 12 236678899999999988764
No 277
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=39.67 E-value=1.2e+02 Score=22.98 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=36.7
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH-HcC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGN 84 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~-~ln 84 (279)
+++.+.+.++-+|.+|..+ |+...=++.|.+.|.++.++.+. .+.
T Consensus 83 ~~~~~~l~~~peV~~~~~v----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 128 (152)
T 2cg4_A 83 PSALAKLESLDEVTEAYYT----TGHYSIFIKVMCRSIDALQHVLINKIQ 128 (152)
T ss_dssp HHHHHHHHTCTTEEEEEEE----SSSCSEEEEEEESCHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCcCeEEEEEE----ecccCEEEEEEECCHHHHHHHHHHHhh
Confidence 7888999999999999876 45555678899999999999884 443
No 278
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=38.54 E-value=1.2e+02 Score=22.69 Aligned_cols=46 Identities=9% Similarity=0.006 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH-HHcC
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGN 84 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai-~~ln 84 (279)
++++.+.+.++-+|.+|..+ ++...=++.|...+.+++++.+ +.+.
T Consensus 78 ~~~~~~~l~~~p~V~~~~~~----tG~~d~~~~v~~~d~~~l~~~l~~~l~ 124 (150)
T 2pn6_A 78 HVELGNKLAQIPGVWGVYFV----LGDNDFIVMARYKTREEFMEKFLERVM 124 (150)
T ss_dssp HHHHHHHHHTSTTEEEEEEC----SSSCSEEEEEEESSHHHHHHHTHHHHT
T ss_pred HHHHHHHHhcCchhhhhhhh----cCcCCEEEEEEECCHHHHHHHHHHHhc
Confidence 37788888999999998775 4555557889999999999988 5654
No 279
>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A
Probab=37.77 E-value=31 Score=22.31 Aligned_cols=55 Identities=2% Similarity=-0.043 Sum_probs=35.6
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
.+| |.++.-..-. ..|++.+.+.-.|..+.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 5 ~~~~v~gm~C~~C~---~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (77)
T 1y3j_A 5 CYIQVTGMTCASCV---ANIERNLRREEGIYSILVALM------AGKAEVRYNPAVIQPPMIAEFIREL 64 (77)
T ss_dssp EEEEESCGGGCSHH---HHHHHHHTTSSSEEECCCBTT------TTBEEEEECTTTSCHHHHHHHHHHH
T ss_pred EEEEECCeeCHHHH---HHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 356 7777655555 678888888777777655332 235778885 345667777664
No 280
>1mwq_A Hypothetical protein HI0828; YCII_HAEIN, structural genomic structure 2 function project, S2F, unknown function; HET: MSE 1PE; 0.99A {Haemophilus influenzae} SCOP: d.58.4.7
Probab=37.20 E-value=1.1e+02 Score=21.61 Aligned_cols=36 Identities=31% Similarity=0.270 Sum_probs=24.1
Q ss_pred cccEEEEEEcCHHHHHHHHHHcCCCccCC--ceeEEeec
Q 023632 62 SRGFGFITFDTEQAVDDLLAKGNKLELAG--AQVEVKKA 98 (279)
Q Consensus 62 ~rG~aFV~F~s~e~a~~Ai~~lng~~l~g--~~i~V~~a 98 (279)
.-++-.|+.+|.++|++.++. +.....+ ..++|..-
T Consensus 60 ~Gg~~i~~a~s~eea~~~~~~-dP~~~~G~~~~~eVrp~ 97 (101)
T 1mwq_A 60 TGSTVIAQFENLQAAKDWAAQ-DPYVEAGVYADVIVKPF 97 (101)
T ss_dssp EEEEEEEECSSHHHHHHHHHT-CHHHHTTCEEEEEEEEE
T ss_pred ceEEEEEEeCCHHHHHHHHHh-CChhhcCCcceEEEEEe
Confidence 346777889999999988887 4433344 34666543
No 281
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=37.16 E-value=17 Score=31.49 Aligned_cols=32 Identities=3% Similarity=-0.002 Sum_probs=23.7
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEee
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMR 55 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~ 55 (279)
..+ |.|||.+++. ..|.++++. ..+..+.++.
T Consensus 111 ~~~iv~NlPy~iss---~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIAT---PLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCH---HHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccH---HHHHHHhcC-CCCCEEEEEe
Confidence 344 9999999999 888888876 5565554443
No 282
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=36.87 E-value=1.2e+02 Score=22.12 Aligned_cols=18 Identities=6% Similarity=0.298 Sum_probs=16.4
Q ss_pred EEEEcCHHHHHHHHHHcC
Q 023632 67 FITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 67 FV~F~s~e~a~~Ai~~ln 84 (279)
.|+|.+.+++..|+...+
T Consensus 74 lItiSsDeEL~~Al~~~~ 91 (102)
T 2kkc_A 74 LVAFSSDEELTMAMSYVK 91 (102)
T ss_dssp EEEECSHHHHHHHHHHCC
T ss_pred EEEecCHHHHHHHHHhcC
Confidence 599999999999999865
No 283
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=36.73 E-value=78 Score=23.49 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=36.3
Q ss_pred cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH-HHcC
Q 023632 34 ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL-AKGN 84 (279)
Q Consensus 34 ~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai-~~ln 84 (279)
.++++.+.+.++-+|.+|..+ ++...-++.|.+.|.++.++.+ +.+.
T Consensus 76 ~~~~~~~~l~~~~~v~~~~~~----~G~~d~~~~v~~~d~~~l~~~~~~~l~ 123 (141)
T 1i1g_A 76 KLFEVAEKLKEYDFVKELYLS----SGDHMIMAVIWAKDGEDLAEIISNKIG 123 (141)
T ss_dssp GHHHHHHHHHHSTTEEEECCC----SSSSSEEEEEEESSHHHHHHHHHHTTT
T ss_pred hHHHHHHHHhcCCCeEEEEEe----cCCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 347788888899999988654 4555567889999999999998 5553
No 284
>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.45 E-value=1.1e+02 Score=21.43 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~l 83 (279)
..|++.+.+.-.|+++.|-... ..+.|+++ +.+++.++|+.+
T Consensus 34 ~~Ie~aL~~l~GV~~v~vdl~~------~~~~V~~~~~~~~i~~~i~~~ 76 (98)
T 2crl_A 34 DAVRKSLQGVAGVQDVEVHLED------QMVLVHTTLPSQEVQALLEGT 76 (98)
T ss_dssp HHHHHTTTTCTTCCEEEEETTT------TEEEEEESSCHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHh
Confidence 6788888888778888775442 35667775 566777777764
No 285
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=36.21 E-value=43 Score=24.59 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=21.3
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITFDT 72 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F~s 72 (279)
+|++|+|..-...++-++||-|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887766678889999999985
No 286
>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}
Probab=35.88 E-value=74 Score=19.37 Aligned_cols=54 Identities=19% Similarity=0.245 Sum_probs=35.5
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHH
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAK 82 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~a~~Ai~~ 82 (279)
.+| |.++.-..-. ..|++.+.+.-.|..+.+-.. ...+.|+|+. .+++.++|+.
T Consensus 5 ~~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~ 63 (71)
T 2ldi_A 5 QQMQVGGMRCAACA---SSIERALERLKGVAEASVTVA------TGRLTVTYDPKQVSEITIQERIAA 63 (71)
T ss_dssp EEEEEETCTTSGGG---HHHHTGGGGCSSEEEEEEETT------TTEEEEEECTTTCCTHHHHHHHHT
T ss_pred EEEEECCccCHHHH---HHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356 8877665555 678888888777877776543 2356778763 3555666665
No 287
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=35.51 E-value=45 Score=29.97 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=36.7
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
|+||..-........+.++.++||+|..+.|.. .-+|...+++.+++++..
T Consensus 21 iG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g~---------~~~vvv~~~~~v~~il~~ 71 (476)
T 3e6i_A 21 IGNLFQLELKNIPKSFTRLAQRFGPVFTLYVGS---------QRMVVMHGYKAVKEALLD 71 (476)
T ss_dssp TBTGGGCCTTCHHHHHHHHHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHHT
T ss_pred ccChhhhccccHhHHHHHHHHHhCCEEEEEECC---------ccEEEECCHHHHHHHHhc
Confidence 777765322222256888889999998887632 346888999999999876
No 288
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=35.34 E-value=32 Score=31.34 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=39.7
Q ss_pred eeeCCCCCCCc-ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCc
Q 023632 22 MTGLSLTPVTE-PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGA 91 (279)
Q Consensus 22 lV~nLp~~~te-~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~ 91 (279)
||+||+.-... .....+.++.++||+|..+++... -+|...+++.+++++.. +...+..+
T Consensus 18 liGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~~---------~~vvv~~p~~~k~il~~-~~~~f~~r 78 (494)
T 3swz_A 18 LVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTK---------TTVIVGHHQLAKEVLIK-KGKDFSGR 78 (494)
T ss_dssp EEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETTE---------EEEEECSHHHHHHHHTT-TTTTTBBC
T ss_pred eEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCCC---------CEEEECCHHHHHHHHHh-CcHhhCCC
Confidence 38887644321 111567788889999988877432 36777899999998866 44444444
No 289
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=35.10 E-value=39 Score=24.17 Aligned_cols=55 Identities=11% Similarity=0.077 Sum_probs=31.7
Q ss_pred Ccee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 19 TQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 19 ~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
++++ |. -+.+++| ++|+.++...=.+.++.|..--+.+. -|...|..+.+.||+.
T Consensus 17 ~~rf~vs-~~~~~tw---eel~~mvk~~f~L~~~~ikY~DEenD-----~v~i~Sq~E~eEAlkv 72 (87)
T 2bkf_A 17 IQSFLVS-DPENTTW---ADIEAMVKVSFDLNTIQIKYLDEENE-----EVSINSQGEYEEALKM 72 (87)
T ss_dssp EEEEEES-CGGGCCH---HHHHHHHHHHHTCSSEEEEEECTTSC-----EEEECSHHHHHHHHHH
T ss_pred eeEEEec-cCCCCCH---HHHHHHHHHHcCCCceEEEEEcCCCC-----EEEEecHHHHHHHHHH
Confidence 3444 43 3457888 77777775332334444443222222 2777888888888875
No 290
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=34.93 E-value=46 Score=24.61 Aligned_cols=26 Identities=19% Similarity=0.318 Sum_probs=19.5
Q ss_pred CeEEEEEeecCCCCCcccEEEEEEcC
Q 023632 47 DVQEHQIMRDHSTSRSRGFGFITFDT 72 (279)
Q Consensus 47 ~V~~v~i~~d~~tg~~rG~aFV~F~s 72 (279)
+|++|+|..-...++-++||-|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 46777776665667888888888875
No 291
>2llz_A Uncharacterized protein YJDK; RNAse, biofilm, unknown function; NMR {Escherichia coli}
Probab=33.74 E-value=67 Score=23.42 Aligned_cols=75 Identities=11% Similarity=0.127 Sum_probs=46.7
Q ss_pred CCCCCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCC-----cccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 15 RQTTTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSR-----SRGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~-----~rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
++.+..+| |.-.+...++ |.+|...|...|-+..+ .|. .+. ...|+||.=.+++++++.++.|- ...
T Consensus 7 n~~~~YVVTf~y~e~~Lt~--~~eL~~~lt~aGF~ttl---~D~-~G~pHeLgtNsFgliS~l~~~ev~~La~~L~-e~A 79 (100)
T 2llz_A 7 NKFNTYVVSFDYPSSYSSV--FLRLRSLMYDMNFSSIV---ADE-YGIPRQLNENSFAITTSLAASEIEDLIRLKC-LDL 79 (100)
T ss_dssp TCCCCEEEEEECCGGGHHH--HHHHHHHHHHTTEESEE---ECS-SSCEEECTTTEEEECCCSCHHHHHHHHHHGG-GTS
T ss_pred ccceEEEEEEEecccchHH--HHHHHHHHHhCCceeEe---ecC-CCCceeccccceeeeccCCHHHHHHHHHHHH-Hhh
Confidence 45556666 7655555554 57888888777654432 232 111 13599999999999998888863 333
Q ss_pred CCceeEEe
Q 023632 89 AGAQVEVK 96 (279)
Q Consensus 89 ~g~~i~V~ 96 (279)
-++..+|.
T Consensus 80 lg~~pev~ 87 (100)
T 2llz_A 80 PDIDFDLN 87 (100)
T ss_dssp SCCCCEEE
T ss_pred cCCCCcee
Confidence 44444444
No 292
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=33.69 E-value=51 Score=23.97 Aligned_cols=59 Identities=12% Similarity=0.034 Sum_probs=37.1
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEE---EEeecCCCCCcccEEEEEEc-CHHHHHHHHHHcCCC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEH---QIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKGNKL 86 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v---~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~lng~ 86 (279)
|.-....+++ -.|.++.++|+.-.+| .|-. ..+.+-|.-+|++. +.+++++||+.|...
T Consensus 26 L~f~g~~~~~---PiIs~l~~~~~v~vnIL~g~I~~--i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 26 LEFTGQSVDA---PLLSETARRFNVNNNIISAQMDY--AGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp EEEEEECTTC---CHHHHHHHHSCCEEEEEEEEEEE--ETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred EEEcCCccCh---hHHHHHHHHHCCCEEEEEEEeEE--ECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 5544555666 5677777788753332 2221 23456788888887 567788888887543
No 293
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=33.50 E-value=21 Score=26.25 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=34.4
Q ss_pred CCCCCCcccHHHHHHHHhcCCCeEEEEEe-ecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEeecc
Q 023632 26 SLTPVTEPALDEFKDFFMQFGDVQEHQIM-RDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 26 Lp~~~te~~~~~L~~~F~~~G~V~~v~i~-~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~a~ 99 (279)
.+.+++| ++|+.++...=.+.++.|. .|.+ +. -|...+..+.+.||+.. .-.+..|.+...+
T Consensus 32 ~~~~~tw---eel~~mvk~~f~L~~~~IkY~DEe-nD-----~V~i~Sq~E~eEAlkva---~k~~n~L~m~V~~ 94 (101)
T 1wj6_A 32 DPENTTW---ADIEAMVKVSFDLNTIQIKYLDEE-NE-----EVSINSQGEYEEALKMA---VKQGNQLQMQVHE 94 (101)
T ss_dssp CTTTSCH---HHHHHHHHHHHCCSSBCCEEECTT-SC-----EECCCSHHHHHHHHHHH---HHHTSEEEEECCB
T ss_pred CCCCCCH---HHHHHHHHHHcCCCceEEEEecCC-CC-----EEEEecHHHHHHHHHHh---ccCCCEEEEEEee
Confidence 4568889 7777776432233333333 2322 22 26777888888888752 2224556665543
No 294
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=33.35 E-value=84 Score=21.65 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=34.5
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 81 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~ 81 (279)
+++.+.++++-+|.+|..+ |+...=.+.|.+.|.++.++.|.
T Consensus 16 ~~~~~~l~~~peV~~~~~v----tG~~D~ll~v~~~d~~~l~~~l~ 57 (92)
T 2djw_A 16 QALGEAIAELPQVAEVYSV----TGPYDLVALVRLKDVEELDDVVT 57 (92)
T ss_dssp HHHHHHHTTSTTEEEEEEE----SSSSSEEEEEEESSGGGHHHHCC
T ss_pred HHHHHHHhcCCCeEEEEEe----ecCCCEEEEEEECCHHHHHHHHH
Confidence 7788889999999999877 45555678899999999988773
No 295
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=33.34 E-value=1.5e+02 Score=22.73 Aligned_cols=46 Identities=9% Similarity=0.043 Sum_probs=35.8
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH-HcC
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KGN 84 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~-~ln 84 (279)
++++.+.+.++-+|.+|..+. +...=++.|.+.|.++.++.+. .+.
T Consensus 85 ~~~~~~~l~~~peV~~~~~vt----G~~d~~~~v~~~d~~~l~~~l~~~l~ 131 (162)
T 2p5v_A 85 REDFAASVRKWPEVLSCFALT----GETDYLLQAFFTDMNAFSHFVLDTLL 131 (162)
T ss_dssp HHHHHHHHTTCTTEEEEEEES----SSCSEEEEEEESSHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcChhhhEeeeec----CCCCEEEEEEECCHHHHHHHHHHHhh
Confidence 377888888999999998763 4445578899999999999884 443
No 296
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=33.28 E-value=1.1e+02 Score=20.37 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=35.9
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH-Hc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA-KG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~-~l 83 (279)
+++.+.+.++-+|.+|..+ |+...=.+.|.+.|.++.++.+. .+
T Consensus 16 ~~~~~~l~~~peV~~~~~v----tG~~d~l~~v~~~d~~~l~~~~~~~l 60 (83)
T 2zbc_A 16 DEVFERLKSMSEVTEVHVV----YGVYDIVVKVEADSMDKLKDFVTNTI 60 (83)
T ss_dssp HHHHHHHTTCTTEEEEEEC----SSSCSEEEEEECSSHHHHHHHHHHTG
T ss_pred HHHHHHHhCCCCeEEEEEE----eccCCEEEEEEECCHHHHHHHHHHHh
Confidence 7788888999999999876 55555678899999999999886 44
No 297
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=33.14 E-value=1.1e+02 Score=20.56 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=35.2
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 81 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~ 81 (279)
+++.+.++++-+|.+|..+ |+...=...|.+.|.++.++.+.
T Consensus 16 ~~~~~~l~~~peV~e~~~v----tG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 16 REVMEKLLAMPEVKEAYVV----YGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp HHHHHHHHTSTTEEEEEEC----BSSCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHhCCCCeeEEEEE----cccCCEEEEEEECCHHHHHHHHH
Confidence 7788888999999999876 45555578899999999999886
No 298
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=32.82 E-value=1.3e+02 Score=21.93 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=28.9
Q ss_pred eeCCCCCCCcccHHHHHHHHhc-CC---CeEEE-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQ-FG---DVQEH-QIMRDHSTSRSRGFGFITFDTEQAVDD 78 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~-~G---~V~~v-~i~~d~~tg~~rG~aFV~F~s~e~a~~ 78 (279)
|..--.+++. .+|++.+.+ |. .++-| .|.+.--.+++.+||.| |+|.+.|++
T Consensus 23 v~H~~~tpsk---~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 23 VSFDAATPSI---KDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp EECSSCCCCH---HHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred EEcCCCCCCH---HHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 3343345666 666665543 22 22222 34444446778888864 788877765
No 299
>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A
Probab=32.76 E-value=66 Score=20.45 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=33.6
Q ss_pred cee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHHc
Q 023632 20 QKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKG 83 (279)
Q Consensus 20 ~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~l 83 (279)
.+| | ++.-.--. ..|++.+.+.-.| ++.+-... .-+.|++. +.+++.++|+.+
T Consensus 4 ~~~~v-gm~C~~C~---~~i~~~l~~~~gV-~v~v~~~~------~~~~v~~~~~~~~i~~~i~~~ 58 (68)
T 3iwl_A 4 HEFSV-DMTCGGCA---EAVSRVLNKLGGV-KYDIDLPN------KKVCIESEHSMDTLLATLKKT 58 (68)
T ss_dssp EEEEE-CCCSHHHH---HHHHHHHHHHCSE-EEEEETTT------TEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEE-CcCcHHHH---HHHHHHHHcCCCe-EEEEEcCC------CEEEEEecCCHHHHHHHHHHc
Confidence 345 6 66544444 6778888777667 77765442 24566664 677777777763
No 300
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=32.55 E-value=49 Score=26.74 Aligned_cols=42 Identities=10% Similarity=0.200 Sum_probs=28.6
Q ss_pred ccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 33 PALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 33 ~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
..|++|++||+.|=.++ .+ ..|-+.+..|.+.++|.+.|++.
T Consensus 127 ~~l~~i~~fF~~YK~le------~k---~gK~v~~~gw~~~~~A~~~I~~~ 168 (174)
T 2prd_A 127 GVKQEIQHFFETYKALE------AK---KGKWVKVTGWRDRKAALEEVRAC 168 (174)
T ss_dssp HHHHHHHHHHHHTTGGG------GG---GTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc------cc---CCCceEECcccCHHHHHHHHHHH
Confidence 34478999999984321 00 11236777899999999998763
No 301
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=32.43 E-value=74 Score=27.63 Aligned_cols=55 Identities=7% Similarity=-0.068 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCCccCCceeEEe
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKLELAGAQVEVK 96 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~ 96 (279)
+++|++...+.|.+- +.| .- ++ ...|..|++++.|+++.+.|....+..+.+.++
T Consensus 237 l~~i~~~~~~~Ga~g-a~m-SG--sG---ptvfal~~~~~~a~~~~~~l~~~g~~~~v~~~~ 291 (306)
T 3pyf_A 237 LARALRAGVEAGALA-GIV-SG--SG---PTCAFLCTSASSAIDVGAQLSGAGVCRTVRVAT 291 (306)
T ss_dssp HHHHHHHHHHTTCSE-EEE-CT--TS---SEEEEEESSHHHHHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHhcCCCE-EEE-cC--cc---hhheEEeCCHHHHHHHHHHHHhcCCcceEEEee
Confidence 456666666776432 222 11 23 367888899888888887775444444444433
No 302
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=32.32 E-value=1.4e+02 Score=21.77 Aligned_cols=54 Identities=6% Similarity=0.210 Sum_probs=29.9
Q ss_pred eeCCCCCCCcccHHHHHHHHhc-CCC---eEEE-EEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQ-FGD---VQEH-QIMRDHSTSRSRGFGFITFDTEQAVDDLL 80 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~-~G~---V~~v-~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai 80 (279)
|..--.+++. .+|++.+.+ |.. ++-| .|.+.--.+++.+||.| |+|.+.|++.-
T Consensus 23 v~H~~~tpsk---~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 23 VKYEGSTPSR---NDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp EECSSSCCCH---HHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred EEcCCCCCCH---HHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 3333345666 677766643 332 2222 33344445777888864 78877776553
No 303
>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A
Probab=32.04 E-value=57 Score=20.29 Aligned_cols=54 Identities=6% Similarity=0.065 Sum_probs=34.6
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 6 ~~~v~gm~C~~C~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 64 (72)
T 1aw0_A 6 VINIDGMTCNSCV---QSIEGVISKKPGVKSIRVSLA------NSNGTVEYDPLLTSPETLRGAIEDM 64 (72)
T ss_dssp EEEEECCCHHHHH---HHHHHHHHTSTTCCCEEEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEECCeecHHHH---HHHHHHHhcCCCeEEEEEEcc------CCEEEEEECCCcCCHHHHHHHHHHC
Confidence 45 7676544344 668888888777777766543 236778886 345666777664
No 304
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=31.95 E-value=25 Score=33.25 Aligned_cols=43 Identities=9% Similarity=0.125 Sum_probs=28.7
Q ss_pred HHHHHH--hcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHH
Q 023632 37 EFKDFF--MQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLL 80 (279)
Q Consensus 37 ~L~~~F--~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai 80 (279)
+|+.+| +.+|.|+++.|...+. -+....+++.|.+.+++.+|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~-p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPK-PPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEEC-CSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEec-CCeEEEEEEEeCCHHHHHHHH
Confidence 356666 3689999988766543 233446788999877766544
No 305
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=31.53 E-value=43 Score=31.30 Aligned_cols=54 Identities=15% Similarity=0.216 Sum_probs=35.7
Q ss_pred CCCCCCcccHHHHHHHHh----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 26 SLTPVTEPALDEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 26 Lp~~~te~~~~~L~~~F~----~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++.+.+. -+|+.+|. .++.|+++.+...+.. +.+-.+++.|.+.++|.+++..+
T Consensus 194 ~~k~~~g---~dl~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTG---YDLRDLFIGAEGTLGIITAATLKLFPKP-RAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSS---CCCHHHHTTSTTSSCEEEEEEEECEECC-SEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCC---cCHHHHhccCCCCcEEEEEEEEEEeecC-ceeEEEEEEcCCHHHHHHHHHHH
Confidence 3444444 45666663 4577888877655432 33457889999999998888765
No 306
>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A
Probab=30.96 E-value=88 Score=18.73 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=34.4
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC----HHHHHHHHHHc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT----EQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s----~e~a~~Ai~~l 83 (279)
+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+. .+++.++|+.+
T Consensus 5 ~~~v~gm~C~~c~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (69)
T 2qif_A 5 TLQVEGMSCQHCV---KAVETSVGELDGVSAVHVNLE------AGKVDVSFDADKVSVKDIADAIEDQ 63 (69)
T ss_dssp EEEEECCCSHHHH---HHHHHHHHTSTTEEEEEEETT------TTEEEEEECTTTCCHHHHHHHHHHT
T ss_pred EEEECCcccHHHH---HHHHHHHhcCCCeeEEEEEec------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 45 7766544334 568888888777877776533 2357788863 45566666663
No 307
>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}
Probab=30.94 E-value=30 Score=23.73 Aligned_cols=57 Identities=2% Similarity=-0.168 Sum_probs=35.3
Q ss_pred CCcee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHHc
Q 023632 18 TTQKM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKG 83 (279)
Q Consensus 18 ~~~~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~l 83 (279)
...+| |.++.-..-. ..|++.+.+.-.|.++.|-... ..+.|++. +.+++.++|+.+
T Consensus 22 ~~~~l~V~Gm~C~~C~---~~Ie~aL~~~~GV~~v~v~l~~------~~~~V~~~~~~~~i~~~i~~~ 80 (85)
T 2k2p_A 22 AGLSFHVEDMTCGHCA---GVIKGAIEKTVPGAAVHADPAS------RTVVVGGVSDAAHIAEIITAA 80 (85)
T ss_dssp CEEEEECTTCCHHHHH---HHHHHHHHHHSTTCEEEEETTT------TEEEEESCCCHHHHHHHHHHT
T ss_pred cEEEEEECCCCCHHHH---HHHHHHHhcCCCeeEEEEECCC------CEEEEEecCCHHHHHHHHHHc
Confidence 34456 7666544444 6677777777667777665442 25566664 566777777764
No 308
>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B
Probab=30.80 E-value=74 Score=19.71 Aligned_cols=54 Identities=9% Similarity=0.112 Sum_probs=33.9
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc---CHHHHHHHHHHc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD---TEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~---s~e~a~~Ai~~l 83 (279)
+| |.++.-.... ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 5 ~~~v~gm~C~~c~---~~i~~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~i~~~i~~~ 62 (72)
T 1fvq_A 5 ILAVHGMTCSACT---NTINTQLRALKGVTKCDISLV------TNECQVTYDNEVTADSIKEIIEDC 62 (72)
T ss_dssp EEEECSCCSHHHH---HHHHHHHHTSSSEEEECCBTT------TTEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCeecHHHH---HHHHHHHhcCCCeEEEEEEec------CCEEEEEECCCCCHHHHHHHHHHC
Confidence 45 6666544344 668888888777777755332 236778875 455666777664
No 309
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=30.79 E-value=97 Score=22.36 Aligned_cols=74 Identities=15% Similarity=0.054 Sum_probs=41.0
Q ss_pred eeCCCCCCCcccHHHHHHHH----hcCCCeEEEEEeecC-CC-CCcccE---EEEEEcCHHHHHHHHH---------HcC
Q 023632 23 TGLSLTPVTEPALDEFKDFF----MQFGDVQEHQIMRDH-ST-SRSRGF---GFITFDTEQAVDDLLA---------KGN 84 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F----~~~G~V~~v~i~~d~-~t-g~~rG~---aFV~F~s~e~a~~Ai~---------~ln 84 (279)
+-.|..+++. +++++.| .+.-.|+++.+-++. .+ ...++| ..++|+|.|+.+.-+. .+
T Consensus 11 lfklk~~~~~---~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~~~~~~~- 86 (111)
T 1rjj_A 11 VVKFKEDTKV---DEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAF- 86 (111)
T ss_dssp EEECSSCCCH---HHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHHHHHHH-
T ss_pred EEEECCcchH---HHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHHHHHHH-
Confidence 4455555533 4444433 355567777776665 32 233443 4568999998876432 11
Q ss_pred CCccCCceeEEeeccCC
Q 023632 85 KLELAGAQVEVKKAEPK 101 (279)
Q Consensus 85 g~~l~g~~i~V~~a~~~ 101 (279)
..+....+.|++....
T Consensus 87 -~~~~~~~~v~D~~~~~ 102 (111)
T 1rjj_A 87 -TAVIDKIVLLDFPVAA 102 (111)
T ss_dssp -HHTCSEEEEEEEEECT
T ss_pred -HHHhcceEEEEeEcce
Confidence 2344566777765543
No 310
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.38 E-value=19 Score=26.48 Aligned_cols=14 Identities=14% Similarity=0.690 Sum_probs=11.0
Q ss_pred ccHHHHHHHHhcCC
Q 023632 33 PALDEFKDFFMQFG 46 (279)
Q Consensus 33 ~~~~~L~~~F~~~G 46 (279)
+||..|+++|++||
T Consensus 88 ~DI~~ire~fqKYG 101 (101)
T 4aj5_1 88 MDIMKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcC
Confidence 46688999999986
No 311
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=30.24 E-value=29 Score=18.35 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=10.5
Q ss_pred cHHHHHHHHhcCC
Q 023632 34 ALDEFKDFFMQFG 46 (279)
Q Consensus 34 ~~~~L~~~F~~~G 46 (279)
.|.+++++|++++
T Consensus 13 aikqvkklfkkwg 25 (26)
T 1ytr_A 13 AIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC
Confidence 4588999999876
No 312
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=30.13 E-value=62 Score=22.98 Aligned_cols=39 Identities=13% Similarity=-0.015 Sum_probs=26.3
Q ss_pred Ccee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeecCCCC
Q 023632 19 TQKM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHSTS 60 (279)
Q Consensus 19 ~~~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg 60 (279)
...| |.+.+.. +++ .++.+++...+....+.|.++..+.
T Consensus 63 D~I~~vng~~v~~~~~---~~~~~~~~~~~~~v~l~v~R~~~~~ 103 (107)
T 1wf8_A 63 DQIVEVDGISLVGVTQ---NFAATVLRNTKGNVRFVIGREKPSG 103 (107)
T ss_dssp CBEEEETTEECBSCCH---HHHHHHHHHCCSEEEEEEEEECCCS
T ss_pred CEEEEECCEECCCCCH---HHHHHHHhcCCCeEEEEEEeCCCCC
Confidence 3455 7776654 466 7777777777888888888775443
No 313
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=30.03 E-value=92 Score=27.02 Aligned_cols=47 Identities=15% Similarity=0.130 Sum_probs=33.7
Q ss_pred cccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 32 EPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 32 e~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.+|+.-|++.|++++.-. +.. ..+..-+.-||-+.+.++|+++++.|
T Consensus 41 s~D~~~~~~~~~~~~~~~-~~~----~~ga~gg~~~~~~~~~~~a~~~~~~l 87 (291)
T 1o57_A 41 SEDLTIIKQTFEQQGIGT-LLT----VPGAAGGVKYIPKMKQAEAEEFVQTL 87 (291)
T ss_dssp HHHHHHHHHHHHHTTSEE-EEE----ECSTTCEEEEEECCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcCCce-EEE----ecCCCCceEEcccCCHHHHHHHHHHH
Confidence 356667789999886432 221 25777788899999999988887765
No 314
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=29.94 E-value=1.1e+02 Score=23.75 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=30.8
Q ss_pred HHHHHhcCCCeEEEEEee-----cCCC----------CCcccEEEEEEcCHHHHHHHHHHc
Q 023632 38 FKDFFMQFGDVQEHQIMR-----DHST----------SRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 38 L~~~F~~~G~V~~v~i~~-----d~~t----------g~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
..++|..||.+.-|+..- .+.| ...--|.+|+|.|.+..+++.+++
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~kv 110 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKM 110 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 456899999876554322 2222 222358999999999999888653
No 315
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=29.41 E-value=1.2e+02 Score=24.51 Aligned_cols=53 Identities=4% Similarity=-0.184 Sum_probs=34.8
Q ss_pred CCceeeeCCCCCCCcccH-----HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCH
Q 023632 18 TTQKMTGLSLTPVTEPAL-----DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTE 73 (279)
Q Consensus 18 ~~~~lV~nLp~~~te~~~-----~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~ 73 (279)
..+.||-.||.+++.++. +.++++|..+|.|.++-|..+.. ..-.|.|.|.+.
T Consensus 70 lare~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~---~NpHaHim~t~R 127 (185)
T 2ns6_A 70 LFKEVEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGG---ENPHCHLMISER 127 (185)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETT---TEEEEEEEECCB
T ss_pred EEEEEEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCC---CCceEEEEEeec
Confidence 344556679999997332 23345666788899999887532 234788887654
No 316
>1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ...
Probab=29.13 E-value=84 Score=22.63 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=17.1
Q ss_pred ccc-EEEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 62 SRG-FGFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 62 ~rG-~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
.+| |.++.|+...++.+-|+. ...++...|+.
T Consensus 56 ~~G~Y~l~~f~a~~~~i~eler--~lr~~~~VlR~ 88 (101)
T 1cqm_A 56 PQGYFLWYQVEMPEDRVNDLAR--ELRIRDNVRRV 88 (101)
T ss_dssp EEEEEEEEEEEECHHHHHHHHH--HHHTSTTEEEE
T ss_pred CEEEEEEEEEEeChHHHHHHHH--HhcCCcceEEE
Confidence 344 577788765555444443 13455554443
No 317
>3izc_n 60S ribosomal protein RPL38 (L38E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_n 3u5e_k 3u5i_k 4b6a_k
Probab=28.99 E-value=54 Score=22.91 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=29.4
Q ss_pred cHHHHHHHHhcC--CCeEEEEEeecCCC---------CCcccEE-----EEEEcCHHHHHHHHHHcC
Q 023632 34 ALDEFKDFFMQF--GDVQEHQIMRDHST---------SRSRGFG-----FITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 34 ~~~~L~~~F~~~--G~V~~v~i~~d~~t---------g~~rG~a-----FV~F~s~e~a~~Ai~~ln 84 (279)
++.+|++|+... -..++|+|..++.. -+.+--| -+...|.+-|++.++.|.
T Consensus 4 ei~dIK~Fl~~arrkDAksv~IKknk~~~~~g~~~~~tKFKvRcsryLYTLvv~D~~KAeKL~qSLP 70 (78)
T 3izc_n 4 EITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAGKAKKLIQSLP 70 (78)
T ss_dssp HHHHHHHHHHHHCCSCEEEEEEECCCCCCTTTSSCCCCEEEEEESSCCCCCSSCSHHHHHHHHHSSS
T ss_pred hHHHHHHHHHHHhhCCCeeEEEEeccccccccccccceEEEEEeccceEEEEeCCHHHHHHHHhcCC
Confidence 346777777543 34778888776521 1111001 134468888888887764
No 318
>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A
Probab=28.76 E-value=1.1e+02 Score=22.48 Aligned_cols=52 Identities=4% Similarity=-0.008 Sum_probs=29.2
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
|.++.-..-. ..|++.+.+.-.|.++.+... ...+.|+|+ +.+++.++|+.+
T Consensus 80 v~gm~C~~C~---~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 135 (151)
T 1p6t_A 80 IEGMTCAACA---NRIEKRLNKIEGVANAPVNFA------LETVTVEYNPKEASVSDLKEAVDKL 135 (151)
T ss_dssp ESSCCSSSHH---HHHHHHHTTSSSEEECCEETT------TTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred ecCCCCHHHH---HHHHHHHhcCCCceEEEEEcc------CCEEEEEECCCCCCHHHHHHHHHHc
Confidence 5555544444 556666666655655544332 235667775 456666666664
No 319
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=28.68 E-value=1.8e+02 Score=21.45 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=33.3
Q ss_pred eeCCCCCCCcccH----HHHHHHHh----cCCCeEEEEEeecCCCCCcccE-EEEEEcCHHHHHHHH
Q 023632 23 TGLSLTPVTEPAL----DEFKDFFM----QFGDVQEHQIMRDHSTSRSRGF-GFITFDTEQAVDDLL 80 (279)
Q Consensus 23 V~nLp~~~te~~~----~~L~~~F~----~~G~V~~v~i~~d~~tg~~rG~-aFV~F~s~e~a~~Ai 80 (279)
+-.|..+++++++ ++|++.|+ +.-.|+++.+-++......--+ ..++|+|.++.+.-+
T Consensus 26 lfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~s~~~~yd~~l~~~F~s~e~l~~Y~ 92 (118)
T 3fmb_A 26 LFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNMNPGETWNIALYSEFDNLDDVKFYA 92 (118)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECCCTTCCCCEEEEEEESSHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccCCCCCCceEEEEEEECCHHHHHHHh
Confidence 6677778876322 23334443 3445777777776432222223 346899999877543
No 320
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=28.61 E-value=1.6e+02 Score=20.97 Aligned_cols=44 Identities=14% Similarity=-0.042 Sum_probs=27.8
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
..|+++-+..+. ++|.|..| .+..+|.=.+.+++++|++.++..
T Consensus 35 k~Ik~I~e~tGv-~~IdI~ed------dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 35 SNIQQARKVPGV-TAIELDED------TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp HHHHHHHTSTTE-EEEEEETT------TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhCC-eEEEEEcC------CCEEEEEECCHHHHHHHHHHHHhh
Confidence 345555555543 33655432 246667667999999999998654
No 321
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=28.45 E-value=1.9e+02 Score=21.70 Aligned_cols=18 Identities=6% Similarity=0.298 Sum_probs=16.4
Q ss_pred EEEEcCHHHHHHHHHHcC
Q 023632 67 FITFDTEQAVDDLLAKGN 84 (279)
Q Consensus 67 FV~F~s~e~a~~Ai~~ln 84 (279)
.|+|.+.++++.|+..++
T Consensus 89 lItISsDeEL~~Al~~~~ 106 (117)
T 2ktr_A 89 LVAFSSDEELTMAMSYVK 106 (117)
T ss_dssp EEEECSHHHHHHHHHHCC
T ss_pred EEEecCHHHHHHHHHhcC
Confidence 599999999999999865
No 322
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=28.36 E-value=26 Score=24.41 Aligned_cols=28 Identities=7% Similarity=0.081 Sum_probs=20.4
Q ss_pred EEEEEcCHHHHHHHHHHcCCCccCCceeEE
Q 023632 66 GFITFDTEQAVDDLLAKGNKLELAGAQVEV 95 (279)
Q Consensus 66 aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V 95 (279)
-||++.+.++.+-|++.+ .+..-++|+|
T Consensus 47 D~Vti~sddDl~~A~~~~--~~~~~~~lei 74 (77)
T 1pqs_A 47 DFVVLGSDEDWNVAKEML--AENNEKFLNI 74 (77)
T ss_dssp EEEECCSTTHHHHHHHHH--HHHCCCEEEE
T ss_pred CEEEEcCHHHHHHHHHHH--HhhhcCeEEE
Confidence 689999999999999875 2223455554
No 323
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=28.35 E-value=1.1e+02 Score=25.97 Aligned_cols=82 Identities=11% Similarity=0.168 Sum_probs=43.2
Q ss_pred CCCCCcee-eeCCCCCCC-cccHHHHHHHHh-----cCCC--------eEEEEEeec---CCCCCcccEEEEEEcCHHHH
Q 023632 15 RQTTTQKM-TGLSLTPVT-EPALDEFKDFFM-----QFGD--------VQEHQIMRD---HSTSRSRGFGFITFDTEQAV 76 (279)
Q Consensus 15 ~~~~~~~l-V~nLp~~~t-e~~~~~L~~~F~-----~~G~--------V~~v~i~~d---~~tg~~rG~aFV~F~s~e~a 76 (279)
+....+.| |-+||+... . + ..+..+|+ .|-. |.++.-... +..-.+| .-.|.|....+-
T Consensus 48 d~iRr~NIRIiGVPEgee~~-~-kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR-~IIvK~~~~~~K 124 (233)
T 2yko_A 48 DYVKRPNLRLIGVPESDVEN-G-TKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPR-HIIVRFTKVEMK 124 (233)
T ss_dssp HHHTTTEEEEESCCCCTTCC-H-HHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCC-CEEEEESSHHHH
T ss_pred HhhcccceeEeecCCCcccc-c-ccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCC-eEEEEecccccH
Confidence 34566889 999999877 2 0 23333332 2432 233311111 1111122 466777766555
Q ss_pred HHHH---HHcCCCccCCceeEEeecc
Q 023632 77 DDLL---AKGNKLELAGAQVEVKKAE 99 (279)
Q Consensus 77 ~~Ai---~~lng~~l~g~~i~V~~a~ 99 (279)
++.| .+....+..+.+|++....
T Consensus 125 ErILkaaR~k~~vtykG~pIrlsaDf 150 (233)
T 2yko_A 125 EKMLRAAREKGRVTLKGKPIRLTVDL 150 (233)
T ss_dssp HHHHHHHHTTSCEEETTEEEEEEECC
T ss_pred HHHHHHHHHhcccccCCCceEEeCCC
Confidence 5444 4444677789999887544
No 324
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=28.20 E-value=1.9e+02 Score=21.58 Aligned_cols=25 Identities=16% Similarity=0.132 Sum_probs=18.2
Q ss_pred ccEEEEEEcCHHHHHHHHHHcCCCcc
Q 023632 63 RGFGFITFDTEQAVDDLLAKGNKLEL 88 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~lng~~l 88 (279)
+..+.|++++.+.|.++|+. .+.++
T Consensus 111 ~~~~~i~~~d~~~A~~~L~~-~g~~v 135 (144)
T 2f06_A 111 VANVVIRPSNMDKCIEVLKE-KKVDL 135 (144)
T ss_dssp EEEEEEEESCHHHHHHHHHH-TTCEE
T ss_pred cEEEEEEeCCHHHHHHHHHH-cCCEE
Confidence 45667788888888888887 45443
No 325
>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}
Probab=28.13 E-value=35 Score=21.40 Aligned_cols=50 Identities=6% Similarity=-0.031 Sum_probs=30.1
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
|.++.-..-. ..+++.+.+. .|.++.+-.. ...+.|+++..+++.++|+.
T Consensus 7 v~gm~C~~C~---~~i~~~l~~~-gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~ 56 (67)
T 2kyz_A 7 VPDISCNHCK---MRISKALEEL-GVKNYEVSVE------EKKVVVETENLDSVLKKLEE 56 (67)
T ss_dssp CGGGGSHHHH---HHHHHHHHHH-TCSEEEEETT------TTEEEEECSCHHHHHHHHHT
T ss_pred ECCcCcHHHH---HHHHHHHHHc-CCeEEEEECC------CCEEEEEECCHHHHHHHHHH
Confidence 5444433333 5677777777 7777766543 23677888765455556655
No 326
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=27.98 E-value=98 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=26.5
Q ss_pred cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 34 ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 34 ~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.|++|+.||+.|=.++ .++. .-...|.+.++|.+.|++.
T Consensus 125 ~l~~I~~fF~~YK~le---------~gK~--v~v~gw~~~~~A~~~I~~~ 163 (172)
T 1sxv_A 125 ELDAIKHFFVHYKDLE---------PGKF--VKAADWVDRAEAEAEVQRS 163 (172)
T ss_dssp HHHHHHHHHHHTTTTS---------TTCC--EEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcC---------CCCe--EEeCCCCCHHHHHHHHHHH
Confidence 4488999999984332 1221 2345789999999988763
No 327
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=27.25 E-value=15 Score=26.90 Aligned_cols=47 Identities=15% Similarity=0.247 Sum_probs=23.6
Q ss_pred CCCCcccHHHHHHHHhc-CCCeEEEEEeecCC----CCCcccEEEEEEcCHHHHHH
Q 023632 28 TPVTEPALDEFKDFFMQ-FGDVQEHQIMRDHS----TSRSRGFGFITFDTEQAVDD 78 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~~-~G~V~~v~i~~d~~----tg~~rG~aFV~F~s~e~a~~ 78 (279)
.+++. .+|++.+.+ |..-.++.|+..-. .+++.+||.| |+|.+.|++
T Consensus 29 ~tpsk---~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSR---EEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCH---HHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 35566 666655533 32223333333322 3567778764 666655544
No 328
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=27.02 E-value=63 Score=23.80 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=21.9
Q ss_pred cccEEEEEEcCHHHHHHHHHHcCCC
Q 023632 62 SRGFGFITFDTEQAVDDLLAKGNKL 86 (279)
Q Consensus 62 ~rG~aFV~F~s~e~a~~Ai~~lng~ 86 (279)
.+||-|||=+++.++++||+.+...
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999999987543
No 329
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.64 E-value=15 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.391 Sum_probs=26.5
Q ss_pred CCCcccHHHHHHHHhc-CCC-eEEEEEeecCC----CCCcccEEEEEEcCHHHHH
Q 023632 29 PVTEPALDEFKDFFMQ-FGD-VQEHQIMRDHS----TSRSRGFGFITFDTEQAVD 77 (279)
Q Consensus 29 ~~te~~~~~L~~~F~~-~G~-V~~v~i~~d~~----tg~~rG~aFV~F~s~e~a~ 77 (279)
+++. .||++.+.+ |.. -.++.++..-. .+++.+||.| |+|.|.|.
T Consensus 39 Tpsk---~eIrekLAk~y~~~~~d~VvV~g~rT~fGggkstGfa~I-Yds~d~aK 89 (138)
T 3iz6_U 39 NVSK---ADLKEKLAKLYEVKDSNCIFVFKFRTHFGGGKSTGFGLI-YDNLDAAK 89 (138)
T ss_dssp CCCS---HHHHHHHHHTCCCCTTCSCCCCCCCCCSSCSCCCCCCCC-SSCHHHHH
T ss_pred CCCH---HHHHHHHHHHhCCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHH
Confidence 5667 888887754 443 22333333322 4677888865 77776654
No 330
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=26.48 E-value=83 Score=23.06 Aligned_cols=54 Identities=4% Similarity=0.059 Sum_probs=30.8
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc----CHHHHHHHHHHc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD----TEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~----s~e~a~~Ai~~l 83 (279)
+| |.++.-..-. ..|++.+.+.-.|.++.+-.. ...+.|+|+ +.+++.++|+.+
T Consensus 83 ~~~v~gm~C~~C~---~~ie~~l~~~~gv~~~~v~~~------~~~~~v~~~~~~~~~~~i~~~i~~~ 141 (149)
T 2ew9_A 83 ELTITGMTCASCV---HNIESKLTRTNGITYASVALA------TSKALVKFDPEIIGPRDIIKIIEEI 141 (149)
T ss_dssp EEEEESCCSHHHH---HHHHHHHHHSSSCCEEEEETT------TTEEEEECCTTTSCHHHHHHHHHHH
T ss_pred EEEEEeccCHHHH---HHHHHHHhcCCCeEEEEEEcC------CCEEEEEECCCCCCHHHHHHHHHhC
Confidence 45 6666544434 566777766666666665433 125667775 345566666654
No 331
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=26.22 E-value=57 Score=29.53 Aligned_cols=50 Identities=18% Similarity=0.266 Sum_probs=30.6
Q ss_pred eeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
|+||..-.. .....|.++.++||+|..+.+.. .-+|...+++.++.++..
T Consensus 20 iG~~~~~~~-~~~~~~~~~~~~yG~i~~~~~g~---------~~~vvv~dp~~i~~il~~ 69 (507)
T 3pm0_A 20 IGNAAAVGQ-AAHLSFARLARRYGDVFQIRLGS---------CPIVVLNGERAIHQALVQ 69 (507)
T ss_dssp --------C-CHHHHHHHHHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTT
T ss_pred eCchhhcCc-cHHHHHHHHHHHhCCEEEEEECC---------ccEEEECCHHHHHHHHHh
Confidence 777654322 12256788889999998887642 346778899999988855
No 332
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=26.06 E-value=1.6e+02 Score=22.06 Aligned_cols=44 Identities=9% Similarity=-0.030 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEE-cCHHHHHHHH-HHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITF-DTEQAVDDLL-AKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F-~s~e~a~~Ai-~~l 83 (279)
+++.+.+.++-+|.+|..+. +...=++.|.+ .|.++.++.+ +.+
T Consensus 83 ~~~~~~l~~~peV~~~~~vt----G~~d~~~~v~~~~d~~~l~~~~~~~l 128 (151)
T 2dbb_A 83 DKVISEISDIEYVKSVEKGV----GRYNIIVRLLLPKDIKDAENLISEFL 128 (151)
T ss_dssp HHHHHHHTTCTTEEEEEEEE----SSCSEEEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEEEeEec----CCCCEEEEEEEcCCHHHHHHHHHHHh
Confidence 67778888888999998774 44455788999 9999999888 554
No 333
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=25.62 E-value=53 Score=25.85 Aligned_cols=48 Identities=10% Similarity=0.277 Sum_probs=26.5
Q ss_pred CCCCcccHHHHHHHHhc-CCCeEEEE----EeecCCCCCcccEEEEEEcCHHHHHHH
Q 023632 28 TPVTEPALDEFKDFFMQ-FGDVQEHQ----IMRDHSTSRSRGFGFITFDTEQAVDDL 79 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~~-~G~V~~v~----i~~d~~tg~~rG~aFV~F~s~e~a~~A 79 (279)
.+++. .||++.+.+ |..-.++. |.+.--.+++.+||.| |+|+|.|.+.
T Consensus 31 aTpSk---~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk~ 83 (149)
T 2xzm_P 31 PTASK---EKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLKY 83 (149)
T ss_dssp CSCCH---HHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHhh
Confidence 35566 667666544 33212222 2223235677788875 7888877653
No 334
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=25.33 E-value=88 Score=22.67 Aligned_cols=31 Identities=6% Similarity=0.025 Sum_probs=19.5
Q ss_pred EEEEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 65 FGFITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 65 ~aFV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
...|..++.|-|++||... +.|.-+.|.|-.
T Consensus 53 ivvvvvddkewaekairfv--kslgaqvliiiy 83 (134)
T 2l69_A 53 IVVVVVDDKEWAEKAIRFV--KSLGAQVLIIIY 83 (134)
T ss_dssp EEEEECSSHHHHHHHHHHH--HHHCCCCEEEEE
T ss_pred EEEEEEccHHHHHHHHHHH--HhcCCeEEEEEE
Confidence 3456677889999999864 334444444443
No 335
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.10 E-value=52 Score=29.58 Aligned_cols=18 Identities=6% Similarity=-0.045 Sum_probs=15.1
Q ss_pred eeCCCCCCCcccHHHHHHHHh
Q 023632 23 TGLSLTPVTEPALDEFKDFFM 43 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~ 43 (279)
|.|||.+++. .-|.++++
T Consensus 147 vaNLPYnIst---pil~~ll~ 164 (353)
T 1i4w_A 147 VANVTGEGSE---GLIMQWLS 164 (353)
T ss_dssp EEECCSTTHH---HHHHHHHH
T ss_pred EEECCCchHH---HHHHHHHH
Confidence 9999999998 66777665
No 336
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=25.07 E-value=87 Score=27.39 Aligned_cols=47 Identities=9% Similarity=0.020 Sum_probs=29.1
Q ss_pred ee-eeCCCCC------CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 21 KM-TGLSLTP------VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~------~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.| |.|..+. -++.|.+.|+++|++.|-- |.+..|. +.++++++|+++
T Consensus 63 aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~--V~~~~dl--------------t~~em~~~l~~f 116 (302)
T 3e4c_A 63 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYS--VDVKKNL--------------TASDMTTELEAF 116 (302)
T ss_dssp EEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCE--EEEEESC--------------CHHHHHHHHHHH
T ss_pred EEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCE--EEEeeCC--------------CHHHHHHHHHHH
Confidence 45 8877442 2344558899999998763 4444442 456666666654
No 337
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=24.92 E-value=2.4e+02 Score=21.71 Aligned_cols=47 Identities=15% Similarity=0.425 Sum_probs=28.2
Q ss_pred CCCCcccHHHHHHHHhc-CCCeEE---E-EEeecCCCCCcccEEEEEEcCHHHHHH
Q 023632 28 TPVTEPALDEFKDFFMQ-FGDVQE---H-QIMRDHSTSRSRGFGFITFDTEQAVDD 78 (279)
Q Consensus 28 ~~~te~~~~~L~~~F~~-~G~V~~---v-~i~~d~~tg~~rG~aFV~F~s~e~a~~ 78 (279)
.+++. .||++.+.+ |..-.+ | .|.+..-.+++.+||.| |+|.|.|.+
T Consensus 33 aTpsr---~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSK---DELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCH---HHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCH---HHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 35667 888887754 442222 2 23333345677788865 788887765
No 338
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=24.73 E-value=1.2e+02 Score=24.98 Aligned_cols=38 Identities=21% Similarity=0.368 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 35 LDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 35 ~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
|++|+.||+.|-.++ .+ |-.-...|.+.++|.+.|++.
T Consensus 153 l~~I~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 190 (196)
T 3gvf_A 153 KDQIKHFFEQYKALE---------KG--KWVKVEGWDGIDAAHKEITDG 190 (196)
T ss_dssp HHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcC---------CC--CeEEeccCcCHHHHHHHHHHH
Confidence 478999999985432 11 112345788999999988763
No 339
>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A
Probab=24.57 E-value=1.4e+02 Score=18.91 Aligned_cols=53 Identities=8% Similarity=0.024 Sum_probs=34.6
Q ss_pred ee-eeCCCCCCCcccHHHHHHHHhcCC-CeEEEEEeecCCCCCcccEEEEEEc-CHHHHHHHHHHc
Q 023632 21 KM-TGLSLTPVTEPALDEFKDFFMQFG-DVQEHQIMRDHSTSRSRGFGFITFD-TEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~~te~~~~~L~~~F~~~G-~V~~v~i~~d~~tg~~rG~aFV~F~-s~e~a~~Ai~~l 83 (279)
+| |. +.-..-. ..|++.+.+.- .|.++.+-... ..+.|++. +.+++.++|+.+
T Consensus 8 ~~~v~-m~C~~C~---~~ie~~l~~~~~GV~~~~v~~~~------~~~~v~~~~~~~~i~~~i~~~ 63 (73)
T 1cc8_A 8 QFNVV-MTCSGCS---GAVNKVLTKLEPDVSKIDISLEK------QLVDVYTTLPYDFILEKIKKT 63 (73)
T ss_dssp EEEEC-CCSHHHH---HHHHHHHHTTTTSEEEEEEETTT------TEEEEEESSCHHHHHHHHHTT
T ss_pred EEEEe-eECHHHH---HHHHHHHHhCCCCceEEEEECCC------CEEEEEEeCCHHHHHHHHHHh
Confidence 45 65 4433334 67888888887 88888776442 25566664 567777777764
No 340
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=24.39 E-value=58 Score=31.33 Aligned_cols=54 Identities=11% Similarity=0.065 Sum_probs=33.2
Q ss_pred CCCCCCcccHHHHHHHHh----cCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 26 SLTPVTEPALDEFKDFFM----QFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 26 Lp~~~te~~~~~L~~~F~----~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
++.+.+. -+|+.+|. .+|.|+++.|...+.. +.+-.+++.|.+.++|.+|+..+
T Consensus 281 ~~~~~~g---~dl~~~~~GseGtlGIIT~~tlrl~p~p-~~~~~~~~~f~~~~~a~~~~~~~ 338 (584)
T 2uuu_A 281 GARSGAG---INYKHIILGSEGTLGIITEAVMKVHAVP-QAVEYYGFLFPTFAHAVSALQQI 338 (584)
T ss_dssp ------C---CCTHHHHTTCTTSSCEEEEEEEECEECC-SEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCC---cchhhhhccCCCCcEEEEEEEEEEEecc-cceEEEEEEcCCHHHHHHHHHHH
Confidence 4444444 45666653 4577888877655432 23457789999999998888765
No 341
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=24.27 E-value=17 Score=31.59 Aligned_cols=32 Identities=9% Similarity=0.024 Sum_probs=24.1
Q ss_pred eeeCCCCCCCcccHHHHHHHHhcCCCeEEEEEeec
Q 023632 22 MTGLSLTPVTEPALDEFKDFFMQFGDVQEHQIMRD 56 (279)
Q Consensus 22 lV~nLp~~~te~~~~~L~~~F~~~G~V~~v~i~~d 56 (279)
||.|||+.++. ..|.++++....++.+.++..
T Consensus 118 vv~NlPY~iss---~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 118 IIGNLPYNISS---PLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp EEEECCHHHHH---HHHHHHGGGGGGEEEEEEEEE
T ss_pred EEEccCccccH---HHHHHHHhccCCccEEEEEee
Confidence 39999999999 888888876555666655543
No 342
>2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1
Probab=24.11 E-value=1.3e+02 Score=21.97 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=11.3
Q ss_pred CCccc-EEEEEEcC-HHHHHHHH
Q 023632 60 SRSRG-FGFITFDT-EQAVDDLL 80 (279)
Q Consensus 60 g~~rG-~aFV~F~s-~e~a~~Ai 80 (279)
...+| |.++.|+. ..++.+-|
T Consensus 60 K~~~G~Y~l~~f~a~~~~~i~el 82 (110)
T 2j5a_A 60 KFNNARYFLVQFKTENPQLPNEL 82 (110)
T ss_dssp SCSEEEEEEEEEEESCTTHHHHH
T ss_pred CCCEEEEEEEEEEeCCHHHHHHH
Confidence 34455 56778876 44433333
No 343
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=23.48 E-value=2.4 Score=33.59 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=15.4
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFD 71 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~ 71 (279)
+||.++|...|.|+... + .|+|+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwfn---~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN---V-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE---T-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEEE---C-----CCCeeEEeeC
Confidence 45566666666555432 2 3789999876
No 344
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=22.85 E-value=1.2e+02 Score=24.20 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=30.0
Q ss_pred ee-eeCCCCC------CCcccHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 21 KM-TGLSLTP------VTEPALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 21 ~l-V~nLp~~------~te~~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.| |.|..+. -++.|.+.|+++|++.+-- |.+..| .+.++++++|+++
T Consensus 46 ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~--V~~~~d--------------lt~~em~~~l~~f 99 (178)
T 2h54_A 46 ALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYS--VDVKKN--------------LTASDMTTELEAF 99 (178)
T ss_dssp EEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCE--EEEEES--------------CCHHHHHHHHHHH
T ss_pred EEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCE--EEEecC--------------CCHHHHHHHHHHH
Confidence 35 7776432 2345558899999998753 444444 2567777777765
No 345
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450, cholesterol SIDE chain cleavage, structural genomics, structural genomics consortium, SGC; HET: HEM CLR; 2.10A {Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Probab=22.69 E-value=70 Score=28.77 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
..|.++.++||+|..+.|-. .-.|.+.+++.++.+++.
T Consensus 36 ~~~~~l~~kYG~i~~~~~g~---------~~~vvv~dp~~~~~il~~ 73 (487)
T 3n9y_A 36 LHHVQNFQKYGPIYREKLGN---------VESVYVIDPEDVALLFKS 73 (487)
T ss_dssp HHHHHHHHHHCSEEEEEETT---------EEEEEECCHHHHHHHHHT
T ss_pred HHHHHHHHHcCceeeccCCC---------CCEEEEcCHHHHHHHHHh
Confidence 46778889999999987642 236888999999998865
No 346
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}
Probab=22.55 E-value=1.8e+02 Score=21.22 Aligned_cols=36 Identities=8% Similarity=0.062 Sum_probs=24.4
Q ss_pred Ccee-eeCCCC--CCCcccHHHHHHHHhcCCCeEEEEEeecC
Q 023632 19 TQKM-TGLSLT--PVTEPALDEFKDFFMQFGDVQEHQIMRDH 57 (279)
Q Consensus 19 ~~~l-V~nLp~--~~te~~~~~L~~~F~~~G~V~~v~i~~d~ 57 (279)
...| |.+.+. .++. +++.+++...+....+.|.++.
T Consensus 77 D~Il~ing~~v~~~~~~---~~~~~~l~~~~~~v~l~v~r~~ 115 (128)
T 2db5_A 77 DQILAINHTPLDQNISH---QQAIALLQQTTGSLRLIVAREP 115 (128)
T ss_dssp CBEEEESSCBCSTTSCH---HHHHHHHHHCCSEEEEEEEECC
T ss_pred CEEEEECCEECCCCCCH---HHHHHHHHcCCCeEEEEEEcCC
Confidence 3455 777764 3456 7788888777777777777664
No 347
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=22.21 E-value=1.4e+02 Score=24.02 Aligned_cols=39 Identities=15% Similarity=0.336 Sum_probs=26.3
Q ss_pred cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 34 ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 34 ~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.|++|++||+.|-.++. + |-.-...|.+.++|.+.|++.
T Consensus 132 ~l~~i~~fF~~YK~le~---------g--K~v~~~g~~~~~~A~~~I~~~ 170 (178)
T 3tr4_A 132 LLDAISHFFERYKDLEP---------N--KWAKVKGWEDKEAAKKEFEAS 170 (178)
T ss_dssp HHHHHHHHHHHTTTTST---------T--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCC---------C--ceeEeccCcCHHHHHHHHHHH
Confidence 34789999998854321 1 112245788999999988764
No 348
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.07 E-value=41 Score=23.96 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=17.5
Q ss_pred eeCCCCCCCcccHHHHHHHHhcC
Q 023632 23 TGLSLTPVTEPALDEFKDFFMQF 45 (279)
Q Consensus 23 V~nLp~~~te~~~~~L~~~F~~~ 45 (279)
....+.+++++++++|+++|..|
T Consensus 23 ~~~~~~~l~~~~~~el~~~F~~~ 45 (100)
T 2lv7_A 23 SEQRPVDIPEDELEEIREAFKVF 45 (100)
T ss_dssp TTCSCCCCCGGGHHHHHHHHHHT
T ss_pred hhcccccCCHHHHHHHHHHHHHH
Confidence 33456677777778999999987
No 349
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=21.89 E-value=1.1e+02 Score=24.73 Aligned_cols=39 Identities=10% Similarity=0.261 Sum_probs=26.2
Q ss_pred cHHHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 34 ALDEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 34 ~~~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.|++|++||+.|=.++ .+ |-.....|.+.++|.+.|++.
T Consensus 130 ~l~~i~~fF~~YK~le---------~g--K~v~v~gw~~~~~A~~~I~~~ 168 (175)
T 2au7_A 130 LKAQIAHFFEHYKDLE---------KG--KWVKVEGWENAEAAKAEIVAS 168 (175)
T ss_dssp HHHHHHHHHHHTTTTS---------TT--CCEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc---------CC--CCeEEccccCHHHHHHHHHHH
Confidence 3478999999984332 11 123445788999999988763
No 350
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=21.78 E-value=1.4e+02 Score=22.36 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHHc
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~l 83 (279)
+++.+.+.++-+|.+|..+. +...=++.|.+.+.++.++.++.+
T Consensus 82 ~~~~~~l~~~p~V~~~~~~~----G~~d~~~~v~~~~~~~l~~~l~~l 125 (150)
T 2w25_A 82 DDAPARLEHIEEVESCYSVA----GEASYVLLVRVASARALEDLLQRI 125 (150)
T ss_dssp CCHHHHHTTCTTEEEEEEES----SSCSEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCeEEEEEeE----CCCCEEEEEEECCHHHHHHHHHHH
Confidence 45778888888999987763 444557889999999999888765
No 351
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=21.58 E-value=2.1e+02 Score=23.34 Aligned_cols=23 Identities=13% Similarity=0.013 Sum_probs=15.7
Q ss_pred CCCCCCCcccHHHHHHHHhcCCC
Q 023632 25 LSLTPVTEPALDEFKDFFMQFGD 47 (279)
Q Consensus 25 nLp~~~te~~~~~L~~~F~~~G~ 47 (279)
.||..++++++++|++++++++-
T Consensus 53 ~~~~~~~~~~~~~~~~~l~~~gl 75 (257)
T 3lmz_A 53 HLPLNSTDEQIRAFHDKCAAHKV 75 (257)
T ss_dssp TSCTTCCHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHHHHHHHcCC
Confidence 44556666556678888888874
No 352
>2lsl_A Telomerase associated protein P65; LA protein, LARP7, RRM, RNA BI protein; NMR {Tetrahymena thermophila}
Probab=27.08 E-value=20 Score=26.26 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.1
Q ss_pred ccEEEEEEcCHHHHHHHHHHc
Q 023632 63 RGFGFITFDTEQAVDDLLAKG 83 (279)
Q Consensus 63 rG~aFV~F~s~e~a~~Ai~~l 83 (279)
.+-|.|.|.+.++...||++|
T Consensus 77 egqamirfqnsdeqrlaiqkl 97 (137)
T 2lsl_A 77 EGQAMIRFQNSDEQRLAIQKL 97 (137)
Confidence 478999999999988888876
No 353
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.34 E-value=32 Score=23.28 Aligned_cols=11 Identities=18% Similarity=0.591 Sum_probs=8.7
Q ss_pred ccEEEEEEcCH
Q 023632 63 RGFGFITFDTE 73 (279)
Q Consensus 63 rG~aFV~F~s~ 73 (279)
+..|||.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 45899999873
No 354
>2f40_A Hypothetical protein PF1455; protein structure prediction, residual dipolar couplings, PY furious, simulated annealing, structural genomics; NMR {Pyrococcus furiosus} SCOP: i.11.1.1
Probab=21.15 E-value=21 Score=25.59 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=25.8
Q ss_pred EEEEEEcC-HHHHHHHHHHcCCCccCCceeEEeec
Q 023632 65 FGFITFDT-EQAVDDLLAKGNKLELAGAQVEVKKA 98 (279)
Q Consensus 65 ~aFV~F~s-~e~a~~Ai~~lng~~l~g~~i~V~~a 98 (279)
-+||.|+. .-.-++.|++|+...+.-+.|+|+.-
T Consensus 47 ~g~ViFDe~kl~~e~lLeelkPEVi~ek~lTv~EL 81 (96)
T 2f40_A 47 VAEVVIDDSKVNIEELKEKLKGEVIEEKEITLQEL 81 (96)
T ss_dssp CCEEECCBCSCSHHHHHHHTTTCSSCCCCCCCSSC
T ss_pred cceEEECcccCCHHHHHHHcChhhcccccccHHHH
Confidence 57899974 44567777889888888888888643
No 355
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A
Probab=20.86 E-value=1.2e+02 Score=20.57 Aligned_cols=35 Identities=6% Similarity=-0.123 Sum_probs=23.0
Q ss_pred Ccee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeec
Q 023632 19 TQKM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRD 56 (279)
Q Consensus 19 ~~~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d 56 (279)
...| |.+.+.. ++. ++|.+++...+....+.|.++
T Consensus 49 D~I~~ing~~v~~~~~---~~~~~~l~~~g~~v~l~v~r~ 85 (91)
T 2vsp_A 49 DVIIEVNGVNVLDEPY---EKVVDRIQSSGKNVTLLVCGK 85 (91)
T ss_dssp CEEEEETTEECTTSCH---HHHHHHHTTSCSEEEEEEEC-
T ss_pred CEEEEECCEECCCCCH---HHHHHHHHcCCCEEEEEEEeC
Confidence 3445 7766654 355 888888877777777777654
No 356
>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}
Probab=20.68 E-value=1.9e+02 Score=21.37 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=18.4
Q ss_pred EEEEcCHHHHHHHHHHcCCCccCCceeEEee
Q 023632 67 FITFDTEQAVDDLLAKGNKLELAGAQVEVKK 97 (279)
Q Consensus 67 FV~F~s~e~a~~Ai~~lng~~l~g~~i~V~~ 97 (279)
-+.|++.|+|.+-.+. |++ ..+|..
T Consensus 63 ~L~F~skE~AiayAek-~G~-----~y~V~e 87 (108)
T 2lju_A 63 CLSFTTRELAIAYAVA-HKI-----DYTVLQ 87 (108)
T ss_dssp CEEESSHHHHHHHHHH-TTC-----EEEEEC
T ss_pred eEecCCHHHHHHHHHH-cCC-----EEEEec
Confidence 5899999999888777 554 455554
No 357
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=20.64 E-value=84 Score=28.20 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcCHHHHHHHHHH
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDTEQAVDDLLAK 82 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~~ 82 (279)
+.|+++.++||+|..+.+.. .-+|...+++.++.++..
T Consensus 35 ~~~~~~~~kYG~i~~~~~~~---------~~~vvv~~~~~i~~il~~ 72 (461)
T 3ld6_A 35 EFLENAYEKYGPVFSFTMVG---------KTFTYLLGSDAAALLFNS 72 (461)
T ss_dssp HHHHHHHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEEEEECC---------ccEEEEeCHHHHHHHHhC
Confidence 56888889999998887642 235777888888888765
No 358
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=20.56 E-value=2.3e+02 Score=19.89 Aligned_cols=43 Identities=5% Similarity=0.132 Sum_probs=25.8
Q ss_pred HHHHHHhcCCC-eE---EEEEeecCCCCCcccEEEEEEcCHHHHHHHHH
Q 023632 37 EFKDFFMQFGD-VQ---EHQIMRDHSTSRSRGFGFITFDTEQAVDDLLA 81 (279)
Q Consensus 37 ~L~~~F~~~G~-V~---~v~i~~d~~tg~~rG~aFV~F~s~e~a~~Ai~ 81 (279)
....+|++||- +. ...++... ....-...|+|.|.++|+++.+
T Consensus 25 ~~~~~l~~~GG~~l~rg~~~~lEG~--~~~~~~viieFps~~aa~a~y~ 71 (94)
T 3lo3_A 25 RVASTLAKYSGEVLVKGSVEQLHGK--FEHKAQVILEFPSREDAYNWYH 71 (94)
T ss_dssp HHHHHHHTTTCEEEEEEECEEEESC--CCCSEEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEEcccccccCC--CCCCeEEEEECCCHHHHHHHHC
Confidence 34457788863 22 11222221 1245578999999999988775
No 359
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1
Probab=20.54 E-value=1.7e+02 Score=20.46 Aligned_cols=37 Identities=5% Similarity=-0.015 Sum_probs=25.3
Q ss_pred Ccee-eeCCCCC-CCcccHHHHHHHHhcCCCeEEEEEeecCC
Q 023632 19 TQKM-TGLSLTP-VTEPALDEFKDFFMQFGDVQEHQIMRDHS 58 (279)
Q Consensus 19 ~~~l-V~nLp~~-~te~~~~~L~~~F~~~G~V~~v~i~~d~~ 58 (279)
...| |.+.+.. ++. +++.+++...+....+.|.++..
T Consensus 61 D~I~~vng~~v~~~~~---~~~~~~l~~~g~~v~l~v~R~~~ 99 (105)
T 1wha_A 61 DRVLSINGVDVTEARH---DHAVSLLTAASPTIALLLEREAG 99 (105)
T ss_dssp CEEEEESSCBCTTCCH---HHHHHHHTSCCSCEEEEEEECCC
T ss_pred CEEEEECCEECCCCCH---HHHHHHHHcCCCeEEEEEEECCC
Confidence 3445 7776654 345 78888888777777788877653
No 360
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=20.30 E-value=2.1e+02 Score=20.74 Aligned_cols=34 Identities=15% Similarity=0.319 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCCeEEEEEeecCCCCCcccEEEEEEcC
Q 023632 36 DEFKDFFMQFGDVQEHQIMRDHSTSRSRGFGFITFDT 72 (279)
Q Consensus 36 ~~L~~~F~~~G~V~~v~i~~d~~tg~~rG~aFV~F~s 72 (279)
-+|.+.++..| |.+..|..+.+++ .=|++++.++
T Consensus 27 PEv~~~L~~aG-i~~ysIfl~~~~~--~LF~~~E~~d 60 (104)
T 1x8d_A 27 PELEAVLKSHG-AHNYAIYLDKARN--LLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHHTT-EEEEEEEEETTTT--EEEEEEEESC
T ss_pred HHHHHHHHHcC-CeEEEEEEECCCC--eEEEEEEEcC
Confidence 45666777775 7777787774332 3489999988
Done!