BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023634
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 118 bits (295), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/187 (44%), Positives = 101/187 (54%), Gaps = 28/187 (14%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTT+TK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLMSTFQNGGFGGTTFP 138
+AC D P+IDGR+AN NLA LG +KP + + G G L F FG T
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRSIQTGFTIGVQQLH--PAFIQRPFGLT--- 118
Query: 139 STAAATFPHYAIQQGI---------PFNLYGYSPYSADYTYPTSYYNVYGGAA-AQYPMY 188
PHY Q I P SPY DYT + Y+ Y AA QYP Y
Sbjct: 119 -------PHYVYPQAIIQPSVVIPTPVQSIA-SPY-IDYTAASQAYSQYTTAAYDQYP-Y 168
Query: 189 GNGHAAG 195
AAG
Sbjct: 169 AASPAAG 175
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 116 bits (291), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/85 (62%), Positives = 65/85 (76%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTTYTK+FVGGL + T ++ KYFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQ 103
+AC D P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 77/114 (67%), Gaps = 5/114 (4%)
Query: 10 AAAGA--GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYG 67
AA GA G DTT+TK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYG
Sbjct: 19 AAPGAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYG 78
Query: 68 FVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNL 121
FVT + AA +AC D P+IDGR+AN NLA LG +KP + + G G L
Sbjct: 79 FVTMADRAAAERACKDPNPIIDGRKANVNLAYLG---AKPRSLQTGFAIGVQQL 129
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTTYTK+FVGGL + T ++ KYFE FGEI EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNL 121
+AC D P+IDGR+AN NLA LG +KP + G G L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPGFAFGVQQL 106
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 114 bits (285), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTTYTK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNL 121
+AC D P+IDGR+AN NLA LG +KP + G G L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPGFAFGVQQL 106
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 114 bits (285), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/103 (55%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTTYTK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNL 121
+AC D P+IDGR+AN NLA LG +KP + G G L
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPGFAFGVQQL 106
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 65/85 (76%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTT+TK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQ 103
+AC D P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 81/183 (44%), Positives = 97/183 (53%), Gaps = 16/183 (8%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTT+TK+FVGGL + T ++ KYFE FG+I EAVVITD+ T +S+GYGFVT + AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLMSTFQNGGFGGT--- 135
+AC D P+IDGR+AN NLA LG +KP + G L F FG T
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRNLQSAFTIGVQQLH--PAFIQRPFGLTPQY 121
Query: 136 TFPSTAAATFPHYAIQQGIPFNLYGYSPYSADYTYPTSYYNVYGGAA-AQYPMYGNGHAA 194
+P T P I IP SPY DY T Y Y AA QYP Y A
Sbjct: 122 IYPPTIVQ--PSMVIPTPIPS---LQSPY-IDYNAATQAYTHYTTAAYEQYP-YAASPAT 174
Query: 195 GGM 197
G M
Sbjct: 175 GYM 177
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 78/118 (66%), Gaps = 3/118 (2%)
Query: 4 PVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRS 63
P + A +A G DTT+TK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S
Sbjct: 13 PRPSAAPSAMHGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 72
Query: 64 KGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNL 121
+GYGFVT + AA +AC D P+IDGR+AN NLA LG +KP + + G G L
Sbjct: 73 RGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLG---AKPRSLQTGFAVGVQQL 127
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 106/245 (43%), Gaps = 78/245 (31%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTTYTK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLMSTFQNGGFGGTTFP 138
+AC D P+IDGR+AN NLA LG +KP + G G +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPGFAFGVQQI----------------- 106
Query: 139 STAAATFPHYAIQQ---GIPFNLYGYSPYSADYTYPTSYYNVYGGAAAQYPMYGNGHAAG 195
H A+ Q GIP A Y YP +Y
Sbjct: 107 --------HPALVQRPYGIP----------AHYVYPQAY------------------VQQ 130
Query: 196 GMMTGGAAAAAAAAYYPYLQFGEGT-------------------GAATTGYTSGQGYGVQ 236
G++ AAA+ PY+ + ATTGY + GYG
Sbjct: 131 GLVIPHVQQTAAASTSPYIDYTSAAYAQYAAAAAAAYDQYPYAASPATTGYVTAAGYGYA 190
Query: 237 YPHHL 241
P L
Sbjct: 191 VPQPL 195
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 107 bits (268), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 106/244 (43%), Gaps = 74/244 (30%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTTYTK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLMSTFQNGGFGGTTFP 138
+AC D P+IDGR+AN NLA LG +KP + G G + P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPGFAFGVQQIH---------------P 108
Query: 139 STAAATFPHYAIQQGIPFNLYGYSPYSADYTYPTSYYNVYGGAAAQYPMYGNGHAAGGMM 198
+ F GIP A Y YP ++ G++
Sbjct: 109 ALIQRPF-------GIP----------AHYVYPHAFVQ------------------PGVV 133
Query: 199 TGGAAAAAAAAYYPYLQF---------------------GEGTGAATTGYTSGQGYGVQY 237
AAAA+ PY+ + ATTGY + GYG
Sbjct: 134 IPHVQQAAAASTSPYIDYTSAAYAQYSAAAAAAAAYDQYPYAASPATTGYVTTAGYGYAV 193
Query: 238 PHHL 241
P L
Sbjct: 194 PQPL 197
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 103/243 (42%), Gaps = 73/243 (30%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
DTTYTK+FVGGL + T ++ KYFE FG+I EAVVITD+ TG+S+GYGFVT + AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLMSTFQNGGFGGTTFP 138
+AC D P+IDGR+AN NLA LG +KP + G G + P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLG---AKPRIMQPGFAFGVQQIH---------------P 108
Query: 139 STAAATFPHYAIQQGIPFNLYGYSPYSADYTYPTSYYNVYGGAAAQYPMYGNGHAAGGMM 198
+ F GIP A Y YP +Y G++
Sbjct: 109 ALIQRPF-------GIP----------AHYVYPQAY------------------VQPGVV 133
Query: 199 TGGAAAAAAAAYYPYLQF--------------------GEGTGAATTGYTSGQGYGVQYP 238
AA + PY+ + A TGY + GYG P
Sbjct: 134 IPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYAASPAATGYVTAAGYGYAVP 193
Query: 239 HHL 241
L
Sbjct: 194 QPL 196
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 10/95 (10%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL+WET +E + +YF +FG+I++ VV+ + +GRS+G+GFVTF +P +
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 84 AAPVIDGRRAN---CNLACLGVQRSKPSTPKHGGG 115
+DGR + CN L PK GGG
Sbjct: 68 GPHTLDGRTIDPKPCNPRTL-------QKPKKGGG 95
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
KVF+GGL + + +F ++G++ E V++ D+ +S+G+GF++F E E++++
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEE-ESSVEH--- 152
Query: 84 AAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNN 120
V + R N N + +++++ P+ G GG +N
Sbjct: 153 ---VTNERYINLNGKQVEIKKAE---PRDGSGGQNSN 183
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 79.0 bits (193), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 11 AAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVT 70
+AGA + G K+FVGGL W T +ET+ YF Q+GE+++ V++ DK T +S+G+GFV
Sbjct: 3 SAGADEIG-----KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVK 57
Query: 71 FREPEAAMKACVDAAPVIDGRRAN---CNLACLGVQRSKPS 108
F++P +DGR + C + +R++P
Sbjct: 58 FKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQPERTRPK 98
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 7/90 (7%)
Query: 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82
K+FVGG+ + + +YF++FG + E V+I D R +G+GF+TF + ++ +A
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 83 DAAPVIDGRRANCNLACLGVQRSKPSTPKH 112
I G++ V+R++P K+
Sbjct: 173 MHFHDIMGKKVE-------VKRAEPRDSKN 195
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 78.2 bits (191), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 48/74 (64%), Gaps = 4/74 (5%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP----EAAMK 79
K+F+GGL WET +++ YFEQFGE+L+ V+ D TGRS+G+GF+TF+ P E K
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 80 ACVDAAPVIDGRRA 93
+ID +RA
Sbjct: 224 EHHLDGKIIDPKRA 237
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 77.8 bits (190), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 3/88 (3%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL W T +ET+ YF Q+GE+++ V++ DK T +S+G+GFV F++P
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 84 AAPVIDGRRAN---CNLACLGVQRSKPS 108
+DGR + C + +R++P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPK 98
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
++ K+FVGG+ + + +YF++FG + E V+I D R +G+GF+TF + ++
Sbjct: 109 NSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 168
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPK 111
+A I G++ V+R++P K
Sbjct: 169 QAVNMHFHDIMGKKVE-------VKRAEPRDSK 194
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL W T +ET+ YF Q+GE+++ V++ DK T +S+G+GFV F++P
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 84 AAPVIDGRRAN---CNLACLGVQRSKP 107
+DGR + C + +RS+P
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRP 97
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 7/93 (7%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
++ K+FVGG+ + +++YF +FG + E V+I D R +G+GF+TF + ++
Sbjct: 110 NSRSNKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 169
Query: 79 KACVDAAPVIDGRRANCNLACLGVQRSKPSTPK 111
+A I G++ V+R++P K
Sbjct: 170 QAVNMHFHDIMGKKVE-------VKRAEPRDSK 195
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
D Y + FVGGLAW T ET+E+ F FG+++++ VITD+ TGRS+G+GFVTF ++ +
Sbjct: 5 DVEY-RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63
Query: 79 KACVDA-APVIDGRRANCNLA 98
A + +DGR N A
Sbjct: 64 DAIENMNGKELDGRNITVNQA 84
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL+W+T E++ YF ++G+I EA+V+ D T RS+G+GFVTF +P + K
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 84 AAPVIDGRRANCNLA 98
+DG++ + +A
Sbjct: 90 GTHELDGKKVDPKVA 104
Score = 68.2 bits (165), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 46/79 (58%)
Query: 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
T K+FVGGL+ T E ++ YFEQFG I +A+++ DK T R +G+GFVTF+ + K
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 80 ACVDAAPVIDGRRANCNLA 98
C I+ + C A
Sbjct: 175 VCEIHFHEINNKMVECKKA 193
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
+ FVGGLAW T E++E+ F QFG+I ++ +I D+ TGRS+G+GFVTF++ E +M+ ++
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKD-EKSMRDAIE 65
Query: 84 AA--PVIDGRRANCNLA 98
+DGR N A
Sbjct: 66 GMNGQELDGRNITVNEA 82
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 3/77 (3%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
+ FVGGLAW T +E+ F QFGE++++ +I D+ TGRS+G+GFVTF++ E +MK +D
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKD-EKSMKDAID 65
Query: 84 AA--PVIDGRRANCNLA 98
+DGR N A
Sbjct: 66 EMNGKELDGRTITVNEA 82
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
D Y + FVGGLAW T E++E F +GEIL++ VITD+ TGRS+G+GFVTF + +
Sbjct: 5 DVEY-RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSML 63
Query: 79 KACVDA-APVIDGRRANCNLA 98
A + +DGR N A
Sbjct: 64 DAIENMNGKELDGRNITVNQA 84
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 54/82 (65%), Gaps = 4/82 (4%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
D Y + FVGGLAW T + ++E F QFGE++++ +I D+ TGRS+G+GFVTF++ E +M
Sbjct: 5 DVEY-RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKD-EKSM 62
Query: 79 KACVDAA--PVIDGRRANCNLA 98
K ++ +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
D+ K+FVGG++WET ++ + ++F +GE+ +A+V+ DK TGR +G+GFV F +P + +
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDP-SVL 60
Query: 79 KACVDAAPVIDGRRANCNLAC 99
+ ID R + A
Sbjct: 61 DRVLQEKHSIDTREVDVKRAM 81
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL E +YFE +G + + ++ D+AT R +G+GFV+F +A
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHK 170
Query: 84 AAPVIDGRRANCNLAC 99
+ G++ A
Sbjct: 171 TFHDLSGKQVEVKRAL 186
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEA 76
+ D Y + FVGGLAW T ++++E+ F +FGE+ ++ +I D+ TGRSKG+ FVTF++ E
Sbjct: 3 YADNEY-RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKD-ED 60
Query: 77 AMKACVDAA--PVIDGR 91
+M+ +D +DGR
Sbjct: 61 SMRTAIDRMNGQELDGR 77
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 53/83 (63%), Gaps = 4/83 (4%)
Query: 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAA 77
GD Y + FVGGLAW T +E F Q+G+++++ +I D+ TGRS+G+GFVTF++ E A
Sbjct: 4 GDVEY-RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKD-EKA 61
Query: 78 MKACVDAA--PVIDGRRANCNLA 98
MK ++ +DGR N A
Sbjct: 62 MKDAIEGMNGQDLDGRSITVNEA 84
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 52/82 (63%), Gaps = 4/82 (4%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
D Y + FVGGLAW T +E F Q+GE+L++ +I D+ TGRS+G+GFVTF++ E +M
Sbjct: 5 DVEY-RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKD-EKSM 62
Query: 79 KACVDAA--PVIDGRRANCNLA 98
K ++ +DGR N A
Sbjct: 63 KDAIEGMNGQDLDGRSITVNEA 84
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 52/77 (67%), Gaps = 3/77 (3%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
+ FVGGLAW T E +++ F QFG+++++ +I D+ +GRS+G+GFVTF++ E AM+ ++
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKD-EKAMRDAIE 65
Query: 84 AA--PVIDGRRANCNLA 98
+DGR N A
Sbjct: 66 EMNGKELDGRVITVNEA 82
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL +ET +E++E+ F ++G++ E VV+ D+ + RS+G+GFVTF PE A A +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 84 A-APVIDGRRANCNLA 98
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q9DED4|CIRBB_XENLA Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-b
PE=1 SV=1
Length = 166
Score = 72.4 bits (176), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL ++T +E++E+ F ++G+I E VV+ D+ T RS+G+GFVTF P+ A A +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 84 A-APVIDGRRANCNLA 98
+DGR+ + A
Sbjct: 66 MNGKAVDGRQIRVDQA 81
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 72.0 bits (175), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 3 TPVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR 62
+P +AAAA ++ K+F+GGL+W+T K+ ++ YF +FGE+++ + D TGR
Sbjct: 83 SPRHTEAAAAQREEW------KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 63 SKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKH 112
S+G+GFV F+E E+ K V+D + N + +R+K K
Sbjct: 137 SRGFGFVLFKESESVDK-------VMDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
K+FVGGL+ +T +E + +YF FGE+ + D T + +G+ F+TF+E E K
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82
+K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F ++A A
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 83 DA-APVIDGRRANCNLA 98
+ ++GR+ NLA
Sbjct: 95 EMDGKELNGRQIRVNLA 111
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 3 TPVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR 62
+P ++AA A ++ K+F+GGL+W+T K+ ++ YF +FGE+++ + D TGR
Sbjct: 83 SPRHSEAATAQREEW------KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 136
Query: 63 SKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKH 112
S+G+GFV F+E E+ K V+D + N + +R+K K
Sbjct: 137 SRGFGFVLFKESESVDK-------VMDQKEHKLNGKVIDPKRAKAMKTKE 179
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
K+FVGGL+ +T +E + +YF FGE+ + D T + +G+ F+TF+E E K
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 238
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Query: 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82
TK+F+GGL+W T ++ F FG++++A VI D+ TGRS+G+GFV F + AA A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 83 DAAPVIDGRRANCNLACLGVQRSKPSTPK 111
+ +DG+ N + +PS P+
Sbjct: 95 E----MDGKELNGRHIRVNPANDRPSAPR 119
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2
PE=1 SV=1
Length = 346
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL+W+T +++ YF +FGEI E +V+ D T RS+G+GFVTF +P + K
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 84 AAPVIDGRRANCNLA 98
+D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + K
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 80 ACVDAAPVIDGRRANCNLA 98
C I+ + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 70.5 bits (171), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 80 ACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLM 124
C I+ + C ++++P G R R+M
Sbjct: 166 VCEIHFHEINNKMVEC-------KKAQPKEVMSPTGSARGRSRVM 203
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL+W+T +E + +YF QFGE+ E +V+ D T RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 84 AAPVIDGRRANCNLA 98
+ +D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2
PE=1 SV=1
Length = 328
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 55/96 (57%), Gaps = 2/96 (2%)
Query: 5 VSAQAAAAGAGQFGDTTYT--KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR 62
+ A + +G D+ + K+F+GGL+W+T +++ YF +FGEI E +V+ D T R
Sbjct: 1 MEANGSQGTSGSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR 60
Query: 63 SKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98
S+G+GFVTF +P + K +D + + +A
Sbjct: 61 SRGFGFVTFADPASVDKVLGQPHHELDSKTIDPKVA 96
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
T K+FVGGL+ T E +++YFEQFG++ +A+++ DK T R +G+GFVTF + K
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 80 ACVDAAPVIDGRRANCNLA 98
C I+ + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 61/110 (55%), Gaps = 13/110 (11%)
Query: 3 TPVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR 62
+P +AA A ++ K+F+GGL+W+T K+ ++ YF +FG++++ + D TGR
Sbjct: 81 SPRHTEAATAQREEW------KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGR 134
Query: 63 SKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACLGVQRSKPSTPKH 112
S+G+GFV F+E E+ K V+D + N + +R+K K
Sbjct: 135 SRGFGFVLFKESESVDK-------VMDQKEHKLNGKVIDPKRAKAMKTKE 177
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
K+FVGGL+ +T +E + +YF FGE+ + D T + +G+ F+TF+E E K
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKK 236
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 46/69 (66%)
Query: 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82
+K+F+GGL+W+T K+ + +Y +FGE+L+ + TD TGRS+G+GFV F++ + K
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 83 DAAPVIDGR 91
+DG+
Sbjct: 94 TKEHKLDGK 102
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 34/56 (60%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
KVFVGGL+ ET +E +++YF FGEI + D T +G+ FVT+ + E K
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQK 175
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1 PE=1
SV=1
Length = 362
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 80 ACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLM 124
C I+ + C ++++P G R R+M
Sbjct: 166 VCEIHFHEINNKMVEC-------KKAQPKEVMSPTGSARGRSRVM 203
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL+W+T +E + +YF QFGE+ E +V+ D T RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 84 AAPVIDGRRANCNLA 98
+ +D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus GN=Msi1
PE=2 SV=1
Length = 362
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 7/105 (6%)
Query: 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
T K+FVGGL+ T E ++ YFEQFG++ +A+++ DK T R +G+GFVTF + K
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 80 ACVDAAPVIDGRRANCNLACLGVQRSKPSTPKHGGGGGRNNLRLM 124
C I+ + C ++++P G R R+M
Sbjct: 166 VCEIHFHEINNKMVEC-------KKAQPKEVMSPTGSARGRSRVM 203
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL+W+T +E + +YF QFGE+ E +V+ D T RS+G+GFVTF + K
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 84 AAPVIDGRRANCNLA 98
+ +D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL+++T ++++E+ F ++G+I E VV+ D+ T RS+G+GFVTF + A A +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 A-APVIDGRRANCNLA 98
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL+++T ++++E+ F ++G+I E VV+ D+ T RS+G+GFVTF + A A +
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 A-APVIDGRRANCNLA 98
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL+W+T K+ ++ YF +FGE+++ + D TGRS+G+GF+ F++ + K
Sbjct: 76 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
Query: 84 AAPVIDGR 91
+DGR
Sbjct: 136 KEHRLDGR 143
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL E +E + +YF QFGEI + D + +G+ F+TF+E + K
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 84 AAPVIDGRRANCNLA 98
+ G + +A
Sbjct: 220 KFHTVSGSKCEIKVA 234
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 53/82 (64%), Gaps = 4/82 (4%)
Query: 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAM 78
D Y + FVGGL W T ++++ F ++G+++++ +ITD+ TGRS+G+GFVTF E AM
Sbjct: 3 DVEY-RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDE-AM 60
Query: 79 KACVDAA--PVIDGRRANCNLA 98
+ ++A +DGR N A
Sbjct: 61 RQAIEAMNGQDLDGRNITVNEA 82
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL+W+T K+ + +Y +FGE+++ + TD TGRS+G+GFV F++ + K
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 84 AAPVIDGR 91
+DG+
Sbjct: 87 KEHKLDGK 94
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
KVFVGGL+ ET +E +++YF FGEI + D T +G+ FVT+ E K
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKK 167
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 47/72 (65%)
Query: 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
T+ K+F+GGL+W+T K+ + +Y +FGE+++ + TD TGRS+G+GFV F++ + K
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 80 ACVDAAPVIDGR 91
+DG+
Sbjct: 108 VLELKEHKLDGK 119
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
KVFVGGL+ +T +E +++YF FGEI + D T +G+ F+T+ + E K
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKK 192
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus
laevis GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 45/68 (66%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+F+GGL+W+T K+ + +Y +FGE+L+ + TD TGRS+G+GFV F++ + K
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 84 AAPVIDGR 91
+DG+
Sbjct: 87 NEHKLDGK 94
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMK 79
KVFVGGL+ ET +E +++YF FGEI + D T +G+ FVT+ E K
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKK 167
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL+++T ++ +E+ F ++G+I E VV+ D+ T RS+G+GFVTF + A A +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 A-APVIDGRRANCNLA 98
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 68.6 bits (166), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83
K+FVGGL+++T ++ +E+ F ++G+I E VV+ D+ T RS+G+GFVTF + A A +
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 84 A-APVIDGRRANCNLA 98
+DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,928,230
Number of Sequences: 539616
Number of extensions: 5602631
Number of successful extensions: 19321
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 16972
Number of HSP's gapped (non-prelim): 2289
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)