Query 023634
Match_columns 279
No_of_seqs 341 out of 1854
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:30:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 9.6E-27 2.1E-31 202.5 14.4 213 13-245 3-219 (247)
2 PLN03134 glycine-rich RNA-bind 99.9 5.5E-21 1.2E-25 158.8 15.0 81 20-100 32-113 (144)
3 TIGR01659 sex-lethal sex-letha 99.8 2.2E-18 4.8E-23 162.0 15.2 83 20-102 191-276 (346)
4 TIGR01659 sex-lethal sex-letha 99.7 2.5E-17 5.4E-22 155.0 11.9 84 17-100 102-186 (346)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5E-17 1.1E-21 152.0 12.6 82 20-101 267-349 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.1E-16 2.5E-21 149.6 11.5 81 21-101 2-83 (352)
7 KOG0117 Heterogeneous nuclear 99.7 1.1E-15 2.3E-20 143.7 14.6 81 20-108 257-338 (506)
8 KOG0125 Ataxin 2-binding prote 99.7 2.5E-16 5.5E-21 143.1 9.2 88 18-107 92-180 (376)
9 PF00076 RRM_1: RNA recognitio 99.7 6.5E-16 1.4E-20 110.6 8.8 69 25-94 1-70 (70)
10 KOG0122 Translation initiation 99.6 7E-16 1.5E-20 135.4 10.1 84 18-101 185-269 (270)
11 KOG0121 Nuclear cap-binding pr 99.6 5.1E-16 1.1E-20 124.3 8.1 79 20-98 34-113 (153)
12 TIGR01648 hnRNP-R-Q heterogene 99.6 8.4E-15 1.8E-19 145.3 16.7 75 21-103 232-309 (578)
13 KOG0113 U1 small nuclear ribon 99.6 4.9E-15 1.1E-19 133.3 11.6 83 18-100 97-180 (335)
14 KOG0148 Apoptosis-promoting RN 99.6 1.3E-14 2.8E-19 129.1 13.3 79 20-104 162-241 (321)
15 KOG0107 Alternative splicing f 99.6 8.2E-15 1.8E-19 123.1 10.7 77 20-101 8-85 (195)
16 KOG4207 Predicted splicing fac 99.6 6E-15 1.3E-19 126.8 9.4 88 16-103 7-95 (256)
17 PF14259 RRM_6: RNA recognitio 99.6 6.2E-15 1.3E-19 106.5 8.0 69 25-94 1-70 (70)
18 TIGR01645 half-pint poly-U bin 99.6 1.1E-14 2.3E-19 145.0 12.4 81 20-100 202-283 (612)
19 PLN03120 nucleic acid binding 99.6 1.2E-14 2.6E-19 130.3 10.8 76 21-99 3-78 (260)
20 TIGR01645 half-pint poly-U bin 99.6 9.1E-15 2E-19 145.5 10.2 79 20-98 105-184 (612)
21 KOG0105 Alternative splicing f 99.6 2.2E-14 4.7E-19 121.6 10.9 78 20-100 4-82 (241)
22 TIGR01628 PABP-1234 polyadenyl 99.5 2.4E-14 5.1E-19 142.6 11.4 76 24-99 2-78 (562)
23 KOG0148 Apoptosis-promoting RN 99.5 1.8E-14 3.9E-19 128.2 8.2 85 15-99 55-140 (321)
24 TIGR01628 PABP-1234 polyadenyl 99.5 3E-14 6.5E-19 141.8 10.2 83 19-102 282-365 (562)
25 KOG0144 RNA-binding protein CU 99.5 9.2E-15 2E-19 136.9 5.0 87 20-107 122-212 (510)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.1E-13 2.4E-18 135.7 12.6 81 21-101 294-375 (509)
27 TIGR01622 SF-CC1 splicing fact 99.5 8.4E-14 1.8E-18 134.9 11.2 82 19-100 86-167 (457)
28 KOG0144 RNA-binding protein CU 99.5 3.8E-14 8.2E-19 132.9 8.2 87 18-104 30-120 (510)
29 TIGR01648 hnRNP-R-Q heterogene 99.5 6.2E-14 1.4E-18 139.1 10.1 76 20-96 56-133 (578)
30 KOG0111 Cyclophilin-type pepti 99.5 1.9E-14 4.2E-19 124.8 5.6 86 18-103 6-92 (298)
31 smart00362 RRM_2 RNA recogniti 99.5 2E-13 4.3E-18 96.4 9.4 71 24-96 1-72 (72)
32 TIGR01622 SF-CC1 splicing fact 99.5 1.6E-13 3.4E-18 133.0 11.7 78 22-99 186-264 (457)
33 smart00360 RRM RNA recognition 99.5 2.1E-13 4.6E-18 95.8 9.0 70 27-96 1-71 (71)
34 PLN03213 repressor of silencin 99.5 1.5E-13 3.3E-18 130.7 9.8 78 19-100 7-87 (759)
35 COG0724 RNA-binding proteins ( 99.5 2.2E-13 4.8E-18 119.1 10.2 78 22-99 115-193 (306)
36 PLN03121 nucleic acid binding 99.5 3.5E-13 7.5E-18 119.4 10.6 76 21-99 4-79 (243)
37 KOG0145 RNA-binding protein EL 99.4 2.7E-13 5.9E-18 120.2 8.8 86 19-104 38-124 (360)
38 KOG0117 Heterogeneous nuclear 99.4 3.3E-13 7.1E-18 127.1 9.4 79 20-98 81-161 (506)
39 KOG0116 RasGAP SH3 binding pro 99.4 9.6E-13 2.1E-17 125.8 12.4 87 20-106 286-372 (419)
40 KOG4205 RNA-binding protein mu 99.4 1.1E-13 2.4E-18 127.8 5.7 85 21-105 5-89 (311)
41 KOG0108 mRNA cleavage and poly 99.4 3E-13 6.6E-18 129.9 8.9 82 23-104 19-101 (435)
42 KOG0131 Splicing factor 3b, su 99.4 2.1E-13 4.5E-18 115.3 6.7 82 18-99 5-87 (203)
43 cd00590 RRM RRM (RNA recogniti 99.4 1.6E-12 3.4E-17 92.2 9.9 73 24-97 1-74 (74)
44 KOG0126 Predicted RNA-binding 99.4 1.9E-14 4.2E-19 121.5 -0.2 79 21-99 34-113 (219)
45 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 2.6E-12 5.7E-17 126.0 11.9 78 19-101 272-351 (481)
46 KOG0130 RNA-binding protein RB 99.4 1.6E-12 3.5E-17 105.2 8.4 86 16-101 66-152 (170)
47 KOG4212 RNA-binding protein hn 99.4 2E-12 4.3E-17 121.6 10.3 78 21-99 43-122 (608)
48 KOG0109 RNA-binding protein LA 99.4 6.5E-13 1.4E-17 119.4 6.7 71 23-101 3-74 (346)
49 KOG4205 RNA-binding protein mu 99.4 6.4E-12 1.4E-16 116.2 13.0 87 21-107 96-182 (311)
50 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 4.4E-12 9.5E-17 124.4 11.1 74 22-101 2-78 (481)
51 KOG0127 Nucleolar protein fibr 99.3 2.9E-12 6.3E-17 123.3 8.9 86 16-101 286-378 (678)
52 smart00361 RRM_1 RNA recogniti 99.3 1.4E-11 3E-16 89.8 8.1 62 35-96 1-70 (70)
53 KOG0114 Predicted RNA-binding 99.3 2.2E-11 4.9E-16 94.4 8.8 81 16-99 12-93 (124)
54 KOG0146 RNA-binding protein ET 99.3 5.9E-12 1.3E-16 112.2 5.6 85 17-101 280-365 (371)
55 KOG0153 Predicted RNA-binding 99.3 1.8E-11 3.8E-16 112.4 8.4 81 14-100 220-302 (377)
56 KOG0127 Nucleolar protein fibr 99.2 2.1E-11 4.5E-16 117.5 8.4 79 22-101 117-196 (678)
57 PF13893 RRM_5: RNA recognitio 99.2 4.8E-11 1E-15 82.8 8.0 55 39-98 1-56 (56)
58 KOG0415 Predicted peptidyl pro 99.2 2.4E-11 5.2E-16 111.9 6.8 81 20-100 237-318 (479)
59 KOG0146 RNA-binding protein ET 99.2 2.8E-11 6.1E-16 107.9 6.0 83 21-104 18-104 (371)
60 KOG0147 Transcriptional coacti 99.2 2.9E-11 6.4E-16 116.5 6.6 83 21-103 277-360 (549)
61 KOG0124 Polypyrimidine tract-b 99.2 2.1E-11 4.5E-16 112.7 4.6 77 21-97 112-189 (544)
62 KOG0131 Splicing factor 3b, su 99.2 6.8E-11 1.5E-15 100.2 7.0 79 22-100 96-176 (203)
63 KOG0109 RNA-binding protein LA 99.1 5.7E-11 1.2E-15 107.0 6.1 82 18-107 74-156 (346)
64 KOG0123 Polyadenylate-binding 99.1 2E-10 4.3E-15 109.1 8.9 82 23-107 77-159 (369)
65 KOG0145 RNA-binding protein EL 99.1 5.8E-10 1.3E-14 99.3 10.1 82 18-99 274-356 (360)
66 KOG0132 RNA polymerase II C-te 99.1 2.8E-10 6.1E-15 113.4 7.8 72 22-99 421-493 (894)
67 TIGR01642 U2AF_lg U2 snRNP aux 99.0 6E-10 1.3E-14 109.4 8.8 76 16-98 169-257 (509)
68 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.6E-09 3.5E-14 105.0 8.8 80 21-100 404-484 (940)
69 KOG4208 Nucleolar RNA-binding 99.0 2.5E-09 5.5E-14 92.3 8.7 84 18-101 45-130 (214)
70 KOG0124 Polypyrimidine tract-b 99.0 1.5E-09 3.1E-14 100.6 7.1 80 20-99 208-288 (544)
71 KOG4212 RNA-binding protein hn 98.9 1.4E-09 3.1E-14 102.6 7.0 74 19-97 533-607 (608)
72 KOG0110 RNA-binding protein (R 98.9 7.1E-10 1.5E-14 109.8 5.1 84 18-101 609-693 (725)
73 KOG4206 Spliceosomal protein s 98.9 3.6E-09 7.8E-14 92.5 8.5 81 20-103 7-92 (221)
74 KOG0533 RRM motif-containing p 98.9 6.3E-09 1.4E-13 93.1 9.4 85 18-103 79-164 (243)
75 KOG0226 RNA-binding proteins [ 98.9 1E-09 2.2E-14 97.4 4.2 83 18-100 186-269 (290)
76 KOG0110 RNA-binding protein (R 98.9 6.8E-09 1.5E-13 102.9 8.3 79 21-99 514-596 (725)
77 KOG1457 RNA binding protein (c 98.8 2.2E-08 4.7E-13 87.6 9.4 89 19-107 31-124 (284)
78 KOG4209 Splicing factor RNPS1, 98.8 1.1E-08 2.4E-13 91.3 6.6 85 17-101 96-180 (231)
79 KOG0123 Polyadenylate-binding 98.8 2.5E-08 5.4E-13 94.9 8.3 71 23-99 2-73 (369)
80 KOG4211 Splicing factor hnRNP- 98.7 3.7E-08 7.9E-13 94.4 8.8 79 18-99 6-84 (510)
81 KOG1548 Transcription elongati 98.6 2E-07 4.4E-12 86.0 8.6 82 18-100 130-220 (382)
82 KOG4454 RNA binding protein (R 98.6 2.2E-08 4.8E-13 87.3 2.0 78 20-99 7-85 (267)
83 KOG0106 Alternative splicing f 98.5 1E-07 2.2E-12 83.8 5.3 69 23-99 2-71 (216)
84 KOG4849 mRNA cleavage factor I 98.5 8.7E-06 1.9E-10 75.5 17.1 75 21-95 79-156 (498)
85 KOG4660 Protein Mei2, essentia 98.5 1.1E-07 2.4E-12 92.3 4.4 72 18-94 71-143 (549)
86 KOG1995 Conserved Zn-finger pr 98.4 5.5E-07 1.2E-11 83.5 7.4 86 17-102 61-155 (351)
87 KOG0151 Predicted splicing reg 98.4 4.8E-07 1E-11 90.0 6.5 83 18-100 170-256 (877)
88 PF04059 RRM_2: RNA recognitio 98.4 2.4E-06 5.3E-11 66.3 9.2 78 23-100 2-86 (97)
89 KOG4211 Splicing factor hnRNP- 98.3 2.1E-06 4.6E-11 82.5 7.8 79 20-99 101-180 (510)
90 KOG0120 Splicing factor U2AF, 98.2 1.4E-06 2.9E-11 85.2 5.3 90 14-103 281-371 (500)
91 PF11608 Limkain-b1: Limkain b 98.2 1.1E-05 2.4E-10 60.7 7.5 67 23-99 3-75 (90)
92 KOG0147 Transcriptional coacti 98.1 1.5E-06 3.2E-11 84.5 2.0 84 17-100 174-257 (549)
93 KOG1457 RNA binding protein (c 98.0 6.7E-06 1.5E-10 72.2 4.7 64 18-85 206-269 (284)
94 KOG1190 Polypyrimidine tract-b 98.0 5E-05 1.1E-09 71.8 10.7 73 22-99 297-371 (492)
95 KOG4210 Nuclear localization s 98.0 5.4E-06 1.2E-10 76.3 4.2 80 21-100 183-263 (285)
96 KOG0106 Alternative splicing f 98.0 6E-06 1.3E-10 72.7 4.1 72 19-98 96-168 (216)
97 PF08777 RRM_3: RNA binding mo 98.0 1.4E-05 2.9E-10 63.0 5.2 70 23-98 2-77 (105)
98 KOG1855 Predicted RNA-binding 97.8 2.1E-05 4.6E-10 74.6 5.0 69 19-87 228-309 (484)
99 PF14605 Nup35_RRM_2: Nup53/35 97.8 7.2E-05 1.6E-09 51.6 5.4 52 23-81 2-53 (53)
100 KOG1190 Polypyrimidine tract-b 97.7 3.3E-05 7.1E-10 73.0 3.8 73 21-99 27-102 (492)
101 KOG4307 RNA binding protein RB 97.7 0.00013 2.8E-09 73.1 7.8 82 16-97 861-943 (944)
102 KOG0129 Predicted RNA-binding 97.6 0.00019 4E-09 69.8 8.2 66 19-84 367-433 (520)
103 KOG4206 Spliceosomal protein s 97.6 0.00025 5.4E-09 62.4 7.4 75 19-98 143-219 (221)
104 KOG0129 Predicted RNA-binding 97.6 0.00021 4.5E-09 69.4 7.5 65 19-84 256-326 (520)
105 COG5175 MOT2 Transcriptional r 97.4 0.0004 8.6E-09 64.5 6.6 77 23-99 115-201 (480)
106 KOG0105 Alternative splicing f 97.4 0.0017 3.6E-08 55.9 9.8 62 17-85 110-171 (241)
107 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00079 1.7E-08 52.6 7.0 79 20-99 4-90 (100)
108 KOG1456 Heterogeneous nuclear 97.2 0.002 4.4E-08 60.6 9.3 79 16-99 281-361 (494)
109 KOG2314 Translation initiation 97.1 0.0021 4.7E-08 63.2 8.5 78 20-98 56-141 (698)
110 KOG1365 RNA-binding protein Fu 97.1 0.0007 1.5E-08 63.8 4.9 77 22-99 280-360 (508)
111 KOG1365 RNA-binding protein Fu 96.8 0.00085 1.8E-08 63.3 3.2 73 22-95 161-237 (508)
112 PF08952 DUF1866: Domain of un 96.8 0.0046 9.9E-08 51.4 6.8 75 20-102 25-108 (146)
113 KOG0128 RNA-binding protein SA 96.7 0.00078 1.7E-08 68.9 2.3 83 22-105 736-819 (881)
114 KOG1548 Transcription elongati 96.7 0.0071 1.5E-07 56.5 7.8 76 20-99 263-350 (382)
115 KOG3152 TBP-binding protein, a 96.6 0.0019 4E-08 58.0 3.5 72 21-92 73-157 (278)
116 PF15023 DUF4523: Protein of u 96.6 0.013 2.8E-07 48.5 7.9 77 15-98 79-159 (166)
117 PF10309 DUF2414: Protein of u 96.6 0.014 2.9E-07 41.6 7.1 57 20-84 3-62 (62)
118 KOG4676 Splicing factor, argin 96.5 0.0032 7E-08 59.6 4.8 79 20-98 5-86 (479)
119 KOG0120 Splicing factor U2AF, 96.5 0.0079 1.7E-07 59.2 7.4 63 37-99 424-490 (500)
120 KOG0128 RNA-binding protein SA 96.5 0.00014 3.1E-09 74.1 -5.0 71 20-90 665-735 (881)
121 KOG2202 U2 snRNP splicing fact 96.3 0.0021 4.5E-08 57.7 1.9 60 39-99 85-146 (260)
122 KOG0115 RNA-binding protein p5 96.2 0.0045 9.8E-08 55.6 3.8 62 23-85 32-93 (275)
123 KOG1456 Heterogeneous nuclear 96.1 0.013 2.9E-07 55.3 6.1 80 14-99 23-105 (494)
124 PF08675 RNA_bind: RNA binding 96.0 0.02 4.4E-07 43.1 5.6 54 23-85 10-63 (87)
125 KOG2193 IGF-II mRNA-binding pr 95.8 0.0055 1.2E-07 58.6 2.6 75 23-104 2-79 (584)
126 KOG2591 c-Mpl binding protein, 95.8 0.012 2.6E-07 58.0 4.9 72 20-98 173-249 (684)
127 KOG1996 mRNA splicing factor [ 95.8 0.029 6.3E-07 51.5 6.9 62 36-97 300-363 (378)
128 KOG4307 RNA binding protein RB 95.4 0.015 3.2E-07 58.8 3.7 80 16-96 428-509 (944)
129 KOG0112 Large RNA-binding prot 94.8 0.033 7.1E-07 57.7 4.5 78 18-101 451-531 (975)
130 KOG2135 Proteins containing th 94.5 0.028 6.1E-07 54.5 3.0 75 21-101 371-446 (526)
131 KOG2068 MOT2 transcription fac 94.4 0.016 3.5E-07 53.9 1.0 78 22-99 77-161 (327)
132 KOG4285 Mitotic phosphoprotein 94.4 0.16 3.4E-06 47.0 7.2 70 22-98 197-267 (350)
133 KOG0112 Large RNA-binding prot 94.2 0.012 2.6E-07 60.8 -0.3 67 18-85 368-434 (975)
134 KOG2416 Acinus (induces apopto 93.4 0.082 1.8E-06 52.7 3.8 75 19-99 441-520 (718)
135 KOG4210 Nuclear localization s 93.3 0.077 1.7E-06 49.0 3.3 79 21-99 87-166 (285)
136 PF03880 DbpA: DbpA RNA bindin 93.2 0.57 1.2E-05 34.1 7.2 66 24-98 2-74 (74)
137 KOG2253 U1 snRNP complex, subu 91.9 0.11 2.4E-06 52.3 2.7 72 18-98 36-108 (668)
138 PF04847 Calcipressin: Calcipr 91.6 0.58 1.3E-05 40.5 6.4 59 35-99 8-69 (184)
139 PF03467 Smg4_UPF3: Smg-4/UPF3 91.4 0.2 4.3E-06 43.0 3.4 80 20-99 5-96 (176)
140 PF07576 BRAP2: BRCA1-associat 91.2 3.8 8.2E-05 32.5 10.2 63 22-86 13-76 (110)
141 KOG4574 RNA-binding protein (c 90.4 0.22 4.8E-06 51.6 3.1 74 23-102 299-375 (1007)
142 PRK11634 ATP-dependent RNA hel 89.8 5.3 0.00011 41.0 12.5 68 23-99 487-561 (629)
143 KOG4660 Protein Mei2, essentia 88.8 0.53 1.1E-05 46.7 4.3 54 46-99 413-471 (549)
144 KOG4454 RNA binding protein (R 82.9 0.27 5.9E-06 43.6 -0.9 68 15-83 73-144 (267)
145 KOG4676 Splicing factor, argin 80.7 0.21 4.5E-06 47.7 -2.6 61 23-87 152-212 (479)
146 PF10567 Nab6_mRNP_bdg: RNA-re 78.9 6.7 0.00014 36.3 6.5 83 18-100 11-107 (309)
147 PF07530 PRE_C2HC: Associated 77.2 6.1 0.00013 28.5 4.8 59 37-98 2-62 (68)
148 KOG4410 5-formyltetrahydrofola 75.7 9.1 0.0002 35.4 6.4 50 21-75 329-378 (396)
149 PF11767 SET_assoc: Histone ly 74.1 16 0.00036 26.2 6.3 53 33-94 11-64 (66)
150 smart00596 PRE_C2HC PRE_C2HC d 73.8 7 0.00015 28.4 4.2 59 37-98 2-62 (69)
151 PF03468 XS: XS domain; Inter 70.3 9 0.00019 30.6 4.6 45 35-82 30-75 (116)
152 KOG4483 Uncharacterized conser 69.4 12 0.00026 36.2 5.9 58 20-84 389-447 (528)
153 KOG0804 Cytoplasmic Zn-finger 66.1 23 0.00049 34.8 7.1 63 22-86 74-137 (493)
154 PF15513 DUF4651: Domain of un 65.1 14 0.0003 26.3 4.2 19 37-55 9-27 (62)
155 PF08206 OB_RNB: Ribonuclease 62.7 1.5 3.3E-05 30.4 -1.0 37 63-99 7-44 (58)
156 KOG2193 IGF-II mRNA-binding pr 61.0 1.1 2.4E-05 43.3 -2.6 74 21-98 79-154 (584)
157 COG0724 RNA-binding proteins ( 54.9 19 0.00042 30.6 4.3 60 17-76 220-279 (306)
158 KOG2295 C2H2 Zn-finger protein 53.5 2.1 4.6E-05 42.7 -2.1 66 20-85 229-294 (648)
159 KOG0921 Dosage compensation co 52.0 1.1E+02 0.0024 33.2 9.6 8 127-134 1189-1196(1282)
160 KOG2891 Surface glycoprotein [ 50.3 16 0.00035 33.7 3.1 35 21-55 148-194 (445)
161 PRK11901 hypothetical protein; 49.4 20 0.00043 33.7 3.6 62 22-88 245-308 (327)
162 KOG4019 Calcineurin-mediated s 49.2 20 0.00044 31.0 3.3 74 20-99 8-88 (193)
163 PF02714 DUF221: Domain of unk 48.9 21 0.00045 32.9 3.7 32 67-99 1-32 (325)
164 KOG2318 Uncharacterized conser 47.9 27 0.00058 35.3 4.4 80 19-98 171-305 (650)
165 PRK14548 50S ribosomal protein 47.7 66 0.0014 24.2 5.6 57 25-84 23-81 (84)
166 PF07292 NID: Nmi/IFP 35 domai 45.8 30 0.00065 26.3 3.5 32 67-98 1-34 (88)
167 KOG4008 rRNA processing protei 43.8 15 0.00033 33.0 1.8 37 17-53 35-71 (261)
168 PF15063 TC1: Thyroid cancer p 43.7 12 0.00027 27.6 1.0 47 4-50 7-53 (79)
169 PF07292 NID: Nmi/IFP 35 domai 40.3 13 0.00029 28.2 0.8 25 19-43 49-73 (88)
170 PRK10629 EnvZ/OmpR regulon mod 40.2 2E+02 0.0043 23.3 7.8 69 23-99 36-109 (127)
171 PF09707 Cas_Cas2CT1978: CRISP 39.3 77 0.0017 24.0 4.8 48 22-72 25-72 (86)
172 PF11411 DNA_ligase_IV: DNA li 38.4 23 0.00049 22.4 1.5 16 32-47 19-34 (36)
173 KOG3424 40S ribosomal protein 32.9 84 0.0018 25.4 4.3 46 33-79 34-84 (132)
174 PF00403 HMA: Heavy-metal-asso 31.8 1.6E+02 0.0035 19.7 6.7 55 24-84 1-59 (62)
175 COG5193 LHP1 La protein, small 31.5 20 0.00042 34.7 0.6 62 21-82 173-244 (438)
176 PRK11558 putative ssRNA endonu 30.1 1.1E+02 0.0023 23.8 4.4 50 22-74 27-76 (97)
177 PLN03134 glycine-rich RNA-bind 30.1 1.3E+02 0.0028 24.6 5.3 19 75-94 84-102 (144)
178 PF08734 GYD: GYD domain; Int 29.1 2.4E+02 0.0052 21.2 6.2 45 36-84 22-67 (91)
179 COG5638 Uncharacterized conser 28.4 83 0.0018 30.7 4.2 43 14-56 138-185 (622)
180 PRK01178 rps24e 30S ribosomal 27.5 1.5E+02 0.0032 23.1 4.8 46 33-79 30-80 (99)
181 PF07876 Dabb: Stress responsi 26.5 2.6E+02 0.0056 20.4 7.0 58 24-81 3-71 (97)
182 TIGR01873 cas_CT1978 CRISPR-as 25.9 75 0.0016 24.1 2.8 49 22-73 25-74 (87)
183 PRK10905 cell division protein 25.4 68 0.0015 30.2 3.0 62 23-89 248-311 (328)
184 PF03439 Spt5-NGN: Early trans 25.1 1E+02 0.0022 22.8 3.5 25 63-87 43-67 (84)
185 PF01071 GARS_A: Phosphoribosy 24.9 2.6E+02 0.0055 24.4 6.4 46 35-84 25-70 (194)
186 PF05189 RTC_insert: RNA 3'-te 24.5 1.2E+02 0.0025 23.2 3.8 49 24-72 12-65 (103)
187 PF08544 GHMP_kinases_C: GHMP 23.4 2.7E+02 0.0059 19.6 5.7 43 37-85 37-80 (85)
188 PRK10590 ATP-dependent RNA hel 23.3 5.7E+02 0.012 24.8 9.3 11 22-32 314-324 (456)
189 PF14893 PNMA: PNMA 23.3 30 0.00065 32.7 0.3 26 20-45 16-41 (331)
190 COG4010 Uncharacterized protei 23.2 2.2E+02 0.0049 23.8 5.3 46 30-85 119-164 (170)
191 COG5353 Uncharacterized protei 23.2 3.6E+02 0.0077 22.7 6.5 55 23-77 88-155 (161)
192 PF04026 SpoVG: SpoVG; InterP 22.4 1.4E+02 0.0031 22.3 3.8 26 48-73 2-27 (84)
193 PF14401 RLAN: RimK-like ATPgr 22.2 1.6E+02 0.0036 24.5 4.5 63 18-80 83-146 (153)
194 KOG3432 Vacuolar H+-ATPase V1 21.3 1.4E+02 0.0031 23.7 3.6 24 31-54 42-65 (121)
195 TIGR03636 L23_arch archaeal ri 20.8 2.5E+02 0.0054 20.7 4.7 58 24-84 15-74 (77)
196 PF13046 DUF3906: Protein of u 20.2 1E+02 0.0022 22.0 2.4 33 35-69 31-63 (64)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.94 E-value=9.6e-27 Score=202.51 Aligned_cols=213 Identities=50% Similarity=0.762 Sum_probs=133.5
Q ss_pred cCCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCee
Q 023634 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (279)
Q Consensus 13 ~~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~ 92 (279)
....+.|++.+|||||+|+|+++.|+|++.|++||+|++++|+.||.|+|+|||+||+|+|.|+|++||+..+.+||||+
T Consensus 3 ~~~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~ 82 (247)
T KOG0149|consen 3 HNNPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRK 82 (247)
T ss_pred CCCCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEccc-CCCCCCCC-CCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCC
Q 023634 93 ANCNLACL-GVQRSKPS-TPKHGGGGGRNNLRLMSTF-QNGGFGGTTFPSTAAATFPHYAIQQGIPFNLYGYSPYSADYT 169 (279)
Q Consensus 93 i~V~~a~~-~~~~~~~~-~~~~~gg~gr~~~~~~~~~-~~gG~GG~~~~~~~~~~~~~yg~~~~~~y~~ygy~~Y~~~y~ 169 (279)
.+|++|.. .+.|..+. ......+...+..-.+... ..-.++....++ ........+..++..+ ...|.+++.
T Consensus 83 aNcnlA~lg~~pR~~~~~~~~~~~g~~~~~~~~~~~~~~q~~~~~~~~~s----~~~~~~~~q~~~~~~~-~a~~~~e~~ 157 (247)
T KOG0149|consen 83 ANCNLASLGGKPRPVPPSQPQQAPGGQQNRPTGMLRALPQQTFGIPPHYS----QQYTQTIVQPSQVIPL-VAPYAAEAS 157 (247)
T ss_pred cccchhhhcCccCCCCCCCcccccccccCCcccccccccccccCCCCccc----ccCCcccccccceeee-ccccChHhh
Confidence 99999987 33344332 2222211111111111000 001111111110 1112233444455566 777777777
Q ss_pred C-CCCccccCCCCCCCCCCCCCCCCCCCcccCcchhhhcccCCcccccccCCCCCCCCccccccccccCCccccccc
Q 023634 170 Y-PTSYYNVYGGAAAQYPMYGNGHAAGGMMTGGAAAAAAAAYYPYLQFGEGTGAATTGYTSGQGYGVQYPHHLFPYS 245 (279)
Q Consensus 170 y-~~~~y~~Ygg~~~q~~~Yg~g~~~~g~~~~~~~~~~~~~~yp~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (279)
| +...|..+. .|+..... ..+.++....++||+ .+..-....+|..++++.++.. ++.++.
T Consensus 158 ~~~~~~y~~~~-------~Y~~~~~~----q~~~~~~~~~p~y~~---~~~~~~~~~~y~~~~~~~vp~~-~v~~~~ 219 (247)
T KOG0149|consen 158 YTPSISYTGYY-------AYGGYSAA----QAAAAAAAAYPQYPY---SPATAGRGRAYISGYGYVVPQA-KVAAAP 219 (247)
T ss_pred hchhhhhhhHh-------hhcCcccc----CCcccccccCccccc---cccccccccccccccccccCch-hhhhcC
Confidence 5 433332221 33333211 001112234555655 4333244678888888888765 444443
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=5.5e-21 Score=158.80 Aligned_cols=81 Identities=38% Similarity=0.718 Sum_probs=76.3
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (279)
...++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|+++++|++||+.++ .+|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 456799999999999999999999999999999999999999999999999999999999999886 5699999999998
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
+.
T Consensus 112 ~~ 113 (144)
T PLN03134 112 ND 113 (144)
T ss_pred Cc
Confidence 64
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.79 E-value=2.2e-18 Score=162.04 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=75.4
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCC--eeEEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDG--RRANCN 96 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~G--r~i~V~ 96 (279)
.+.++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.++.. |++ +.|+|+
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~ 270 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVR 270 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999854 655 688999
Q ss_pred EcccCC
Q 023634 97 LACLGV 102 (279)
Q Consensus 97 ~a~~~~ 102 (279)
+++...
T Consensus 271 ~a~~~~ 276 (346)
T TIGR01659 271 LAEEHG 276 (346)
T ss_pred ECCccc
Confidence 986543
No 4
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2.5e-17 Score=154.98 Aligned_cols=84 Identities=21% Similarity=0.294 Sum_probs=78.3
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
.++...++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.|+. +|.+++|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 4556789999999999999999999999999999999999999999999999999999999999999875 599999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
+++++
T Consensus 182 ~~a~p 186 (346)
T TIGR01659 182 SYARP 186 (346)
T ss_pred ecccc
Confidence 98764
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=5e-17 Score=152.00 Aligned_cols=82 Identities=23% Similarity=0.348 Sum_probs=76.5
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|.+||+.++. +|+||+|+|.++
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 4445799999999999999999999999999999999999999999999999999999999999986 599999999998
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
..+
T Consensus 347 ~~~ 349 (352)
T TIGR01661 347 TNK 349 (352)
T ss_pred cCC
Confidence 654
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.1e-16 Score=149.58 Aligned_cols=81 Identities=30% Similarity=0.443 Sum_probs=76.1
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.+++ .|.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 357999999999999999999999999999999999999999999999999999999999999975 5999999999986
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
+.
T Consensus 82 ~~ 83 (352)
T TIGR01661 82 PS 83 (352)
T ss_pred cc
Confidence 54
No 7
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=1.1e-15 Score=143.69 Aligned_cols=81 Identities=30% Similarity=0.418 Sum_probs=74.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
.+++.|||+||+.++|||.|+++|++||+|++|+.++| ||||+|.++++|.+|++.+|. +|+|..|+|.+|
T Consensus 257 s~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 257 SKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred hheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 47799999999999999999999999999999999877 999999999999999999985 699999999999
Q ss_pred ccCCCCCCCC
Q 023634 99 CLGVQRSKPS 108 (279)
Q Consensus 99 ~~~~~~~~~~ 108 (279)
|+..+++..+
T Consensus 329 KP~~k~k~~r 338 (506)
T KOG0117|consen 329 KPVDKKKKER 338 (506)
T ss_pred CChhhhccch
Confidence 9877766554
No 8
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=2.5e-16 Score=143.05 Aligned_cols=88 Identities=28% Similarity=0.527 Sum_probs=78.5
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
...+.++|+|.|||+...|-||+.+|++||+|.+|+|+.+. .-+|||+||+|++.++|++|-++++. +|.||+|+|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44577999999999999999999999999999999999974 56899999999999999999999986 5999999999
Q ss_pred EcccCCCCCCC
Q 023634 97 LACLGVQRSKP 107 (279)
Q Consensus 97 ~a~~~~~~~~~ 107 (279)
.+..+...+|.
T Consensus 170 ~ATarV~n~K~ 180 (376)
T KOG0125|consen 170 NATARVHNKKK 180 (376)
T ss_pred ccchhhccCCc
Confidence 99776554443
No 9
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.65 E-value=6.5e-16 Score=110.64 Aligned_cols=69 Identities=36% Similarity=0.664 Sum_probs=64.6
Q ss_pred EEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 25 lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
|||+|||+++++++|+++|++||.|..+++..+ .+++++++|||+|+++++|++|++.++. .|+|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 6789999999999999999999998875 59999875
No 10
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=7e-16 Score=135.37 Aligned_cols=84 Identities=27% Similarity=0.379 Sum_probs=78.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~ 96 (279)
+..+.++|-|.||+.+++|++|++||..||.|.+|.|.+|+.||.+||||||+|+++++|.+||+.|+.. ++.-.|+|+
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvE 264 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVE 264 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEE
Confidence 4457789999999999999999999999999999999999999999999999999999999999999876 889999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
|+++.
T Consensus 265 wskP~ 269 (270)
T KOG0122|consen 265 WSKPS 269 (270)
T ss_pred ecCCC
Confidence 99653
No 11
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=5.1e-16 Score=124.29 Aligned_cols=79 Identities=22% Similarity=0.345 Sum_probs=75.0
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a 98 (279)
.+.++|||+||..-++||+|.++|+++|+|+.|.+-.|+.+....|||||+|-+.++|+.|++.++.. |+.+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46799999999999999999999999999999999999999999999999999999999999999765 99999999987
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=8.4e-15 Score=145.32 Aligned_cols=75 Identities=28% Similarity=0.403 Sum_probs=67.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhc--CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~f--G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (279)
+.++|||+||+++++|++|+++|++| |+|++|++++ +||||+|+++++|++||+.+| .+|+|++|+|++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 46789999999999999999999999 9999998764 499999999999999999987 469999999999
Q ss_pred cccCCC
Q 023634 98 ACLGVQ 103 (279)
Q Consensus 98 a~~~~~ 103 (279)
+++...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 976543
No 13
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.61 E-value=4.9e-15 Score=133.28 Aligned_cols=83 Identities=31% Similarity=0.546 Sum_probs=76.8
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.+...+||||+-|+.+++|.+|++.|++||.|+.|+|++|+.|+++||||||+|+++.+...|.+...+ .|+|++|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 336789999999999999999999999999999999999999999999999999999999999998865 5999999988
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
+-.-
T Consensus 177 vERg 180 (335)
T KOG0113|consen 177 VERG 180 (335)
T ss_pred eccc
Confidence 7653
No 14
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=1.3e-14 Score=129.14 Aligned_cols=79 Identities=34% Similarity=0.529 Sum_probs=72.5
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (279)
.+.|+||||||+.-++|++||+.|+.||.|.+|+|.+| +||+||.|+++|+|.+||..+| .+|.|+.++|.|-
T Consensus 162 p~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 162 PDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred CCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 57899999999999999999999999999999999998 6899999999999999999996 5799999999998
Q ss_pred ccCCCC
Q 023634 99 CLGVQR 104 (279)
Q Consensus 99 ~~~~~~ 104 (279)
+.....
T Consensus 236 Ke~~~~ 241 (321)
T KOG0148|consen 236 KEGDDG 241 (321)
T ss_pred ccCCCC
Confidence 755433
No 15
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=8.2e-15 Score=123.06 Aligned_cols=77 Identities=29% Similarity=0.439 Sum_probs=70.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
.-.++|||+||+.++++.||+.+|.+||.|..|+|-+++ .|||||+|++..+|++|+..|+. .|+|.+|+|+++
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 457999999999999999999999999999999998764 79999999999999999999985 599999999998
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
.-.
T Consensus 83 ~G~ 85 (195)
T KOG0107|consen 83 TGR 85 (195)
T ss_pred cCC
Confidence 543
No 16
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.58 E-value=6e-15 Score=126.82 Aligned_cols=88 Identities=25% Similarity=0.423 Sum_probs=80.6
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
+.+-+..++|-|-||...++.++|+.+|++||+|-+|.|++|+.|..++|||||.|.+..+|++|+++|+. +|+|+.|.
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 33445678999999999999999999999999999999999999999999999999999999999999975 69999999
Q ss_pred EEEcccCCC
Q 023634 95 CNLACLGVQ 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|.+|+-...
T Consensus 87 Vq~arygr~ 95 (256)
T KOG4207|consen 87 VQMARYGRP 95 (256)
T ss_pred ehhhhcCCC
Confidence 999976544
No 17
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=6.2e-15 Score=106.54 Aligned_cols=69 Identities=32% Similarity=0.592 Sum_probs=63.5
Q ss_pred EEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEE
Q 023634 25 VFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (279)
Q Consensus 25 lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~ 94 (279)
|||+|||+++++++|+++|+.+|.|.++++.+++. ++.+++|||+|.+.++|++|++.++ ..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999998 569999875
No 18
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.58 E-value=1.1e-14 Score=144.99 Aligned_cols=81 Identities=17% Similarity=0.393 Sum_probs=76.2
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+||++++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.+|. +|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 3568999999999999999999999999999999999999999999999999999999999999986 599999999988
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
..
T Consensus 282 i~ 283 (612)
T TIGR01645 282 VT 283 (612)
T ss_pred CC
Confidence 53
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.2e-14 Score=130.29 Aligned_cols=76 Identities=17% Similarity=0.281 Sum_probs=69.3
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
..++|||+||+++++|++|+++|+.||+|++|+|++|+. ++|||||+|+++++|++||...+..|.|+.|+|+++.
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAE 78 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEecc
Confidence 358999999999999999999999999999999999864 5799999999999999999744567999999999985
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=9.1e-15 Score=145.49 Aligned_cols=79 Identities=30% Similarity=0.558 Sum_probs=74.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+||+++++|++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++. +|+||+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4668999999999999999999999999999999999999999999999999999999999999975 599999999864
No 21
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=2.2e-14 Score=121.60 Aligned_cols=78 Identities=22% Similarity=0.372 Sum_probs=68.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||.++.|.+|+++|.|||.|.+|.|... .....||||+|++..+|+.||..-+. .++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 45689999999999999999999999999999988433 34568999999999999999998875 599999999998
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
..
T Consensus 81 rg 82 (241)
T KOG0105|consen 81 RG 82 (241)
T ss_pred cC
Confidence 53
No 22
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.55 E-value=2.4e-14 Score=142.56 Aligned_cols=76 Identities=28% Similarity=0.475 Sum_probs=72.9
Q ss_pred EEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEcc
Q 023634 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLAC 99 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a~ 99 (279)
+|||+|||.++||++|+++|++||+|++|+|++|+.|++++|||||+|.+.++|++||+.++.. |.|+.|+|.|+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 7999999999999999999999999999999999999999999999999999999999999855 999999999874
No 23
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.8e-14 Score=128.24 Aligned_cols=85 Identities=36% Similarity=0.518 Sum_probs=78.5
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i 93 (279)
+.........|||+.|..+++-|+||+.|.+||+|.+++|++|..|+|+|||+||.|-++++|++||+.||.. |.+|.|
T Consensus 55 sk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~I 134 (321)
T KOG0148|consen 55 SKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTI 134 (321)
T ss_pred CCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecccee
Confidence 3334455789999999999999999999999999999999999999999999999999999999999999976 889999
Q ss_pred EEEEcc
Q 023634 94 NCNLAC 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+.+|+.
T Consensus 135 RTNWAT 140 (321)
T KOG0148|consen 135 RTNWAT 140 (321)
T ss_pred eccccc
Confidence 999994
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.53 E-value=3e-14 Score=141.80 Aligned_cols=83 Identities=29% Similarity=0.467 Sum_probs=76.3
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
....++|||+||++++++++|+++|++||+|++|+|+.| .++++||||||+|.+.++|++||+.++. +|+|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 456688999999999999999999999999999999999 5799999999999999999999999975 59999999999
Q ss_pred cccCC
Q 023634 98 ACLGV 102 (279)
Q Consensus 98 a~~~~ 102 (279)
+..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 96543
No 25
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=9.2e-15 Score=136.94 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=76.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC--ccCC--eeEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDG--RRANC 95 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~--~i~G--r~i~V 95 (279)
.+.+||||+-|++.++|+|++++|++||.|++|.|++|.+ +.+|||+||+|.++|-|..||+.+|+ ++.| ..|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4578999999999999999999999999999999999974 89999999999999999999999985 3554 67899
Q ss_pred EEcccCCCCCCC
Q 023634 96 NLACLGVQRSKP 107 (279)
Q Consensus 96 ~~a~~~~~~~~~ 107 (279)
++|...++|..+
T Consensus 201 kFADtqkdk~~~ 212 (510)
T KOG0144|consen 201 KFADTQKDKDGK 212 (510)
T ss_pred EecccCCCchHH
Confidence 999876655443
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.51 E-value=1.1e-13 Score=135.75 Aligned_cols=81 Identities=25% Similarity=0.511 Sum_probs=76.0
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..++|||+|||+.+++++|+++|++||.|+.+.|++++.+++++|||||+|.+.++|++||+.|+. .|.|++|.|+++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 457999999999999999999999999999999999999999999999999999999999999975 5999999999986
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 44
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=8.4e-14 Score=134.92 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=75.6
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEc
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a 98 (279)
+...++|||+|||.++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+..+..|.|+.|.|..+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQSS 165 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEeec
Confidence 34578999999999999999999999999999999999999999999999999999999999986667799999999886
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 53
No 28
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=3.8e-14 Score=132.87 Aligned_cols=87 Identities=28% Similarity=0.437 Sum_probs=75.7
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC--CccCC--eeE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PVIDG--RRA 93 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~--~~i~G--r~i 93 (279)
.|.+.-||||+-||+.++|+|||++|++||.|.+|.|++||.|+.+||||||+|.++++|.+|+.+++ ++|.| ..|
T Consensus 30 ~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 30 PDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred CCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 45667899999999999999999999999999999999999999999999999999999999999985 34665 567
Q ss_pred EEEEcccCCCC
Q 023634 94 NCNLACLGVQR 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
.|+.+....++
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 77777644433
No 29
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.50 E-value=6.2e-14 Score=139.14 Aligned_cols=76 Identities=30% Similarity=0.434 Sum_probs=67.5
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc-CCeeEEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI-DGRRANCN 96 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i-~Gr~i~V~ 96 (279)
...++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.++. +| .++.|.|.
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 34689999999999999999999999999999999999 7899999999999999999999999974 44 46655443
No 30
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.9e-14 Score=124.77 Aligned_cols=86 Identities=29% Similarity=0.421 Sum_probs=79.7
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
...+.++||||+|..+++|.-|...|-.||.|.+|.++.|-.++++|||+||+|+..|+|..||..+| .+|.||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34566899999999999999999999999999999999999999999999999999999999999998 46999999999
Q ss_pred EcccCCC
Q 023634 97 LACLGVQ 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
++++..-
T Consensus 86 ~AkP~ki 92 (298)
T KOG0111|consen 86 LAKPEKI 92 (298)
T ss_pred ecCCccc
Confidence 9986543
No 31
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2e-13 Score=96.41 Aligned_cols=71 Identities=32% Similarity=0.558 Sum_probs=65.4
Q ss_pred EEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
+|||+|||.++++++|+++|++||+|.++++..++ ++++++|||+|.+.++|++|++.++ ..+.+++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7788999999999999999999987 56999998873
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.49 E-value=1.6e-13 Score=133.02 Aligned_cols=78 Identities=32% Similarity=0.598 Sum_probs=74.8
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
.++|||+||+.+++|++|+++|++||.|+.|.|++++.+++++|||||+|.+.++|++||+.|+. +|.|+.|+|.++.
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 68999999999999999999999999999999999999999999999999999999999999975 5999999999986
No 33
>smart00360 RRM RNA recognition motif.
Probab=99.49 E-value=2.1e-13 Score=95.82 Aligned_cols=70 Identities=36% Similarity=0.589 Sum_probs=65.1
Q ss_pred ECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 27 VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 27 VgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
|+|||+++++++|+++|++||.|.++++..++.+++++++|||+|.+.++|++|++.++ ..+++++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999999998889999999999999999999999987 55899998874
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.5e-13 Score=130.73 Aligned_cols=78 Identities=18% Similarity=0.302 Sum_probs=70.4
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCH--HHHHHHHHhcCC-ccCCeeEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP--EAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~--e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
.....+||||||++++++++|+.+|..||.|.+|.|++ .|| ||||||+|.+. +++.+||+.|+. ++.||.|+|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKV 82 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRL 82 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEE
Confidence 34568999999999999999999999999999999994 466 99999999977 689999999986 599999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
+.|++
T Consensus 83 NKAKP 87 (759)
T PLN03213 83 EKAKE 87 (759)
T ss_pred eeccH
Confidence 99984
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=2.2e-13 Score=119.05 Aligned_cols=78 Identities=29% Similarity=0.596 Sum_probs=74.9
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEcc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (279)
.++|||+||++++++++|+++|.+||.|..+.+..|+.+++++|||||+|.+.+++.+||+.++ ..|.|++|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 6999999999999999999999999999999999999999999999999999999999999998 56999999999975
No 36
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=3.5e-13 Score=119.38 Aligned_cols=76 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
+..+|||+||+++++|++|+++|+.||+|++|+|++|. +.++||||+|+++++++.||...+.+|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45799999999999999999999999999999999984 45689999999999999999766778999999998764
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=2.7e-13 Score=120.24 Aligned_cols=86 Identities=27% Similarity=0.429 Sum_probs=79.7
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~ 97 (279)
++..+.|.|.-||.++|+||||.+|...|+|++|++++||.+|++-||+||.|.++++|++||..+|.. |..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 456688999999999999999999999999999999999999999999999999999999999999875 9999999999
Q ss_pred cccCCCC
Q 023634 98 ACLGVQR 104 (279)
Q Consensus 98 a~~~~~~ 104 (279)
+++..+.
T Consensus 118 ARPSs~~ 124 (360)
T KOG0145|consen 118 ARPSSDS 124 (360)
T ss_pred ccCChhh
Confidence 9865543
No 38
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=3.3e-13 Score=127.11 Aligned_cols=79 Identities=28% Similarity=0.458 Sum_probs=72.4
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc-CCeeEEEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI-DGRRANCNL 97 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i-~Gr~i~V~~ 97 (279)
...|.||||.||.++.|++|..||++.|+|-+++|+.|+.+|.+||||||+|.+.++|++||+.+| .+| .||.|.|..
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~ 160 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCV 160 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEE
Confidence 456899999999999999999999999999999999999999999999999999999999999986 454 688887765
Q ss_pred c
Q 023634 98 A 98 (279)
Q Consensus 98 a 98 (279)
+
T Consensus 161 S 161 (506)
T KOG0117|consen 161 S 161 (506)
T ss_pred e
Confidence 4
No 39
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.44 E-value=9.6e-13 Score=125.84 Aligned_cols=87 Identities=25% Similarity=0.384 Sum_probs=74.4
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
....+|||+|||.++++++|+++|.+||.|++..|......++..+||||+|++.++++.||++....|++++|.|+..+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 44566999999999999999999999999999988775544555699999999999999999998667999999999987
Q ss_pred cCCCCCC
Q 023634 100 LGVQRSK 106 (279)
Q Consensus 100 ~~~~~~~ 106 (279)
......+
T Consensus 366 ~~~~g~~ 372 (419)
T KOG0116|consen 366 PGFRGNG 372 (419)
T ss_pred ccccccc
Confidence 6554433
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.43 E-value=1.1e-13 Score=127.82 Aligned_cols=85 Identities=40% Similarity=0.744 Sum_probs=79.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEccc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (279)
+.++|||++|+|+++||.|++.|++||+|.+|+|++|+.++++|||+||+|++.+.+.++|....++|+++.|+++.+.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 78999999999999999999999999999999999999999999999999999999999999888999999999999876
Q ss_pred CCCCC
Q 023634 101 GVQRS 105 (279)
Q Consensus 101 ~~~~~ 105 (279)
+....
T Consensus 85 r~~~~ 89 (311)
T KOG4205|consen 85 REDQT 89 (311)
T ss_pred ccccc
Confidence 65443
No 41
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.43 E-value=3e-13 Score=129.91 Aligned_cols=82 Identities=29% Similarity=0.540 Sum_probs=77.7
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcccC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACLG 101 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~~~ 101 (279)
+.|||||||.+++||+|.++|++.|.|.+++++.|++||++|||+|++|.+.+++++|++.+|. ++.||+|+|+++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999985 699999999999765
Q ss_pred CCC
Q 023634 102 VQR 104 (279)
Q Consensus 102 ~~~ 104 (279)
..+
T Consensus 99 ~~~ 101 (435)
T KOG0108|consen 99 KNA 101 (435)
T ss_pred chh
Confidence 543
No 42
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.43 E-value=2.1e-13 Score=115.29 Aligned_cols=82 Identities=28% Similarity=0.393 Sum_probs=77.4
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~ 96 (279)
+.....+|||+||+..++|+.|.++|-+.|.|.++++++|+.+...+|||||+|.++|+|+-||+.++.+ |-||+|+|+
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 4456789999999999999999999999999999999999999999999999999999999999999854 999999999
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 986
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.42 E-value=1.6e-12 Score=92.23 Aligned_cols=73 Identities=32% Similarity=0.571 Sum_probs=67.1
Q ss_pred EEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEE
Q 023634 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~ 97 (279)
+|+|+|||+.+++++|+++|+++|.|..+.+..++.+ +.++++||+|.+.++|..|++.++.. +++++++|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 5899999999999999999999999999999988755 77899999999999999999999865 9999998864
No 44
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=1.9e-14 Score=121.50 Aligned_cols=79 Identities=28% Similarity=0.561 Sum_probs=74.2
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a~ 99 (279)
+..-|||||||.++||.+|..+|++||+|.+|.|++|+.||+++||||+.|+|..+..-|+..+|.+ |.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 4568999999999999999999999999999999999999999999999999999999999999876 999999998764
No 45
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.38 E-value=2.6e-12 Score=125.99 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=70.7
Q ss_pred CCCccEEEECCCCc-cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 19 d~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
+...++|||+||++ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.|+. .|.|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 45678999999998 69999999999999999999999874 69999999999999999999975 5999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98543
No 46
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=105.19 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=79.1
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
|.-..+.--|||.++.++++|++|.+.|..||+|+.+.|..|+.||-.|||++|+|++.++|++||+.+|. +|.+..|.
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~ 145 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVS 145 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCcee
Confidence 44445567899999999999999999999999999999999999999999999999999999999999985 69999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|.|+...
T Consensus 146 VDw~Fv~ 152 (170)
T KOG0130|consen 146 VDWCFVK 152 (170)
T ss_pred EEEEEec
Confidence 9999754
No 47
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.38 E-value=2e-12 Score=121.62 Aligned_cols=78 Identities=21% Similarity=0.417 Sum_probs=72.2
Q ss_pred CccEEEECCCCccCcHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
..+.+||.|||.++.|.+||++| ++.|+|+.|.|+.|. ++|+||||.|+|+++|.++||+|.|++ +++||.|.|+..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 45679999999999999999999 679999999999996 699999999999999999999999985 699999999987
Q ss_pred c
Q 023634 99 C 99 (279)
Q Consensus 99 ~ 99 (279)
.
T Consensus 122 ~ 122 (608)
T KOG4212|consen 122 H 122 (608)
T ss_pred C
Confidence 4
No 48
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.38 E-value=6.5e-13 Score=119.40 Aligned_cols=71 Identities=28% Similarity=0.532 Sum_probs=67.1
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcccC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACLG 101 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~~~ 101 (279)
.||||+|||.++++.+|+.+|++||+|++|.|+++ |+||+.+|.+.++.||+.|++ +|+|..|+|+.++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 48999999999999999999999999999999987 999999999999999999987 599999999998765
No 49
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.37 E-value=6.4e-12 Score=116.16 Aligned_cols=87 Identities=32% Similarity=0.586 Sum_probs=80.2
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEccc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (279)
..++|||++|+.+++|++|++.|++||.|.++.++.|+.+.++|||+||+|++++++++++...-++|+++.++|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 36799999999999999999999999999999999999999999999999999999999999888899999999999977
Q ss_pred CCCCCCC
Q 023634 101 GVQRSKP 107 (279)
Q Consensus 101 ~~~~~~~ 107 (279)
+......
T Consensus 176 k~~~~~~ 182 (311)
T KOG4205|consen 176 KEVMQST 182 (311)
T ss_pred hhhcccc
Confidence 6554433
No 50
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.35 E-value=4.4e-12 Score=124.41 Aligned_cols=74 Identities=20% Similarity=0.217 Sum_probs=66.8
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc--C-CccCCeeEEEEEc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA--A-PVIDGRRANCNLA 98 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~--~-~~i~Gr~i~V~~a 98 (279)
.++|||+|||++++|++|+++|++||+|++|+|+++ |+||||+|++.++|++||+.+ + ..|.|+.|.|+++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 579999999999999999999999999999999864 579999999999999999974 4 4599999999998
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
...
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 643
No 51
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=2.9e-12 Score=123.27 Aligned_cols=86 Identities=35% Similarity=0.521 Sum_probs=77.4
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-----C--cc
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-----P--VI 88 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-----~--~i 88 (279)
+.++...++|||+|||++++|++|.++|++||+|..+.|+.++.|++++|.|||.|.+..++.+||+... . .|
T Consensus 286 ~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll 365 (678)
T KOG0127|consen 286 RENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLL 365 (678)
T ss_pred cccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEE
Confidence 3445566899999999999999999999999999999999999999999999999999999999999761 2 38
Q ss_pred CCeeEEEEEcccC
Q 023634 89 DGRRANCNLACLG 101 (279)
Q Consensus 89 ~Gr~i~V~~a~~~ 101 (279)
+||.|+|..+-.+
T Consensus 366 ~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 366 DGRLLKVTLAVTR 378 (678)
T ss_pred eccEEeeeeccch
Confidence 9999999998654
No 52
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.4e-11 Score=89.76 Aligned_cols=62 Identities=29% Similarity=0.502 Sum_probs=54.5
Q ss_pred cHHHHHHHHH----hcCCEEEEE-EeecCCC--CCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 35 QKETMEKYFE----QFGEILEAV-VITDKAT--GRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 35 tee~L~~~F~----~fG~I~~v~-i~~dk~t--g~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.+++|+++|+ +||.|.+|. |+.++.+ +++|||+||+|.+.++|.+||+.|+. .++||.|+|+
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 3678889998 999999995 7777767 89999999999999999999999975 5999999873
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.27 E-value=2.2e-11 Score=94.42 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=71.2
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~ 94 (279)
.......+-|||.|||.++|.|++.++|.+||.|..|+|-.++. .+|-|||.|++..+|++||+.|... ++++-+.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 34455668899999999999999999999999999999977654 5899999999999999999999764 9999998
Q ss_pred EEEcc
Q 023634 95 CNLAC 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|-+-.
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 87654
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=5.9e-12 Score=112.21 Aligned_cols=85 Identities=28% Similarity=0.368 Sum_probs=79.8
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V 95 (279)
.+..+.|+|||=.||.+..+.||.++|-.||.|.+.++..|+.|..+|+|+||.|++..+++.||..+|.. |.-+||+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 45678899999999999999999999999999999999999999999999999999999999999999986 99999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
.+++++
T Consensus 360 QLKRPk 365 (371)
T KOG0146|consen 360 QLKRPK 365 (371)
T ss_pred hhcCcc
Confidence 998554
No 55
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.8e-11 Score=112.44 Aligned_cols=81 Identities=32% Similarity=0.448 Sum_probs=73.2
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc-CC-ccCCe
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-AP-VIDGR 91 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~-~~-~i~Gr 91 (279)
-.+.+|...++|||++|...++|.+|+++|.+||+|+.++++.. ++||||+|.++++|++|.++. +. .|+|+
T Consensus 220 lepPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 220 LEPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred cCCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecce
Confidence 46678889999999999999999999999999999999999876 469999999999999999986 44 49999
Q ss_pred eEEEEEccc
Q 023634 92 RANCNLACL 100 (279)
Q Consensus 92 ~i~V~~a~~ 100 (279)
+|+|.|.++
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999864
No 56
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=2.1e-11 Score=117.50 Aligned_cols=79 Identities=28% Similarity=0.455 Sum_probs=72.4
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEccc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~~ 100 (279)
--+|.|+||||.+.+.+|+.+|++||.|.+|.|++.++ ++-+|||||.|.+..+|.+||+.+| ++|+||.|.|.||-.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 57999999999999999999999999999999998775 5666999999999999999999998 569999999999964
Q ss_pred C
Q 023634 101 G 101 (279)
Q Consensus 101 ~ 101 (279)
.
T Consensus 196 K 196 (678)
T KOG0127|consen 196 K 196 (678)
T ss_pred c
Confidence 3
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.23 E-value=4.8e-11 Score=82.78 Aligned_cols=55 Identities=31% Similarity=0.527 Sum_probs=49.0
Q ss_pred HHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 39 MEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 39 L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
|+++|++||+|+++++..++ ++++||+|.+.++|++|++.++. .++|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997764 68999999999999999999975 499999999985
No 58
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=2.4e-11 Score=111.86 Aligned_cols=81 Identities=31% Similarity=0.475 Sum_probs=75.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
.....|||..|.+-+++++|+-+|++||.|..|.|++|+.||.+-.||||+|++.+++++|.-+|.. .|+.++|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4668999999999999999999999999999999999999999999999999999999999999854 599999999887
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
.+
T Consensus 317 QS 318 (479)
T KOG0415|consen 317 QS 318 (479)
T ss_pred hh
Confidence 53
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.8e-11 Score=107.89 Aligned_cols=83 Identities=28% Similarity=0.408 Sum_probs=73.3
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC--ccCC--eeEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDG--RRANCN 96 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~--~i~G--r~i~V~ 96 (279)
+++|||||-|.+.-.|||++.+|..||+|++|.+++..+ +.+|||+||+|.+..+|..||..++. ++-| ..|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 679999999999999999999999999999999999874 89999999999999999999999974 3554 568899
Q ss_pred EcccCCCC
Q 023634 97 LACLGVQR 104 (279)
Q Consensus 97 ~a~~~~~~ 104 (279)
++...++|
T Consensus 97 ~ADTdkER 104 (371)
T KOG0146|consen 97 FADTDKER 104 (371)
T ss_pred eccchHHH
Confidence 98665444
No 60
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.18 E-value=2.9e-11 Score=116.55 Aligned_cols=83 Identities=31% Similarity=0.544 Sum_probs=75.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
+..+|||+||..+++|++|+.+|+.||+|+.|.+++|.+||++|||+||+|.+.++|++|++.+|. +|-|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 444599999999999999999999999999999999999999999999999999999999999986 5999999998875
Q ss_pred cCCC
Q 023634 100 LGVQ 103 (279)
Q Consensus 100 ~~~~ 103 (279)
.+..
T Consensus 357 ~r~~ 360 (549)
T KOG0147|consen 357 ERVD 360 (549)
T ss_pred eecc
Confidence 5443
No 61
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=2.1e-11 Score=112.71 Aligned_cols=77 Identities=31% Similarity=0.569 Sum_probs=73.2
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
-.|+||||.|.+++.|+.||..|..||.|++|.+-+|+.|+++|||+||+|+-.|.|.-|+|.+|. ++.||.|+|..
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 468999999999999999999999999999999999999999999999999999999999999986 59999999874
No 62
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=6.8e-11 Score=100.15 Aligned_cols=79 Identities=25% Similarity=0.411 Sum_probs=72.9
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v-~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..+|||+||.++++|..|.++|+.||.|... +|++|.+|+.++||+||.|++.|.+.+||+.++. .++.++|.|+.++
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 3799999999999999999999999988764 8999999999999999999999999999999975 5999999999985
Q ss_pred c
Q 023634 100 L 100 (279)
Q Consensus 100 ~ 100 (279)
.
T Consensus 176 k 176 (203)
T KOG0131|consen 176 K 176 (203)
T ss_pred e
Confidence 4
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.14 E-value=5.7e-11 Score=106.99 Aligned_cols=82 Identities=23% Similarity=0.447 Sum_probs=73.3
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
.....+||+|+||.+.++.+||+..|+++|.|.+|+|++| |+||+|+-.++|..||+.|+ .+++|++++|.
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 3567789999999999999999999999999999999877 99999999999999999986 57999999999
Q ss_pred EcccCCCCCCC
Q 023634 97 LACLGVQRSKP 107 (279)
Q Consensus 97 ~a~~~~~~~~~ 107 (279)
++.++......
T Consensus 146 ~stsrlrtapg 156 (346)
T KOG0109|consen 146 LSTSRLRTAPG 156 (346)
T ss_pred eeccccccCCC
Confidence 99766554443
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=2e-10 Score=109.14 Aligned_cols=82 Identities=33% Similarity=0.526 Sum_probs=72.6
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEcccC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLACLG 101 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a~~~ 101 (279)
..|||.||+++++.++|.++|+.||+|++|++.+|.. | +||| ||+|+++++|++||+.+|.+ +.+++|.|-....+
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 3399999999999999999999999999999999974 4 9999 99999999999999999865 89999999888665
Q ss_pred CCCCCC
Q 023634 102 VQRSKP 107 (279)
Q Consensus 102 ~~~~~~ 107 (279)
..+.++
T Consensus 154 ~er~~~ 159 (369)
T KOG0123|consen 154 EEREAP 159 (369)
T ss_pred hhhccc
Confidence 554443
No 65
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=5.8e-10 Score=99.25 Aligned_cols=82 Identities=24% Similarity=0.349 Sum_probs=76.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~ 96 (279)
.+...--|||=||..+++|.-|.++|..||.|..|+|++|..|.+-|||+||+..+-++|..||..+|.. +.+|.|.|+
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 4445678999999999999999999999999999999999999999999999999999999999999875 999999999
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
++.
T Consensus 354 FKt 356 (360)
T KOG0145|consen 354 FKT 356 (360)
T ss_pred Eec
Confidence 874
No 66
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.07 E-value=2.8e-10 Score=113.38 Aligned_cols=72 Identities=22% Similarity=0.428 Sum_probs=66.9
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEcc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (279)
.+|||||.|+.+++|.+|+.+|+.||+|.+|.++.. |+||||+...+.+|++|+.+|. ..+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 479999999999999999999999999999988765 7899999999999999999996 45999999999985
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.04 E-value=6e-10 Score=109.36 Aligned_cols=76 Identities=18% Similarity=0.325 Sum_probs=60.4
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhc------------CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHh
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQF------------GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~f------------G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~ 83 (279)
+..+...++|||+|||+++++++|+++|+++ +.|..+.+ .+.+|||||+|.+.++|.+||+
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~- 241 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA- 241 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-
Confidence 3455677899999999999999999999975 23333333 3458999999999999999995
Q ss_pred cCC-ccCCeeEEEEEc
Q 023634 84 AAP-VIDGRRANCNLA 98 (279)
Q Consensus 84 ~~~-~i~Gr~i~V~~a 98 (279)
|+. .|.|+.|+|...
T Consensus 242 l~g~~~~g~~l~v~r~ 257 (509)
T TIGR01642 242 LDSIIYSNVFLKIRRP 257 (509)
T ss_pred CCCeEeeCceeEecCc
Confidence 654 599999888654
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=1.6e-09 Score=105.03 Aligned_cols=80 Identities=24% Similarity=0.392 Sum_probs=74.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..++|||.+|...+...+|+.||++||+|+-++|+++..+.-.++|+||++.+.++|.+||+.|+. +|.|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 457899999999999999999999999999999999988888899999999999999999999985 5999999999987
Q ss_pred c
Q 023634 100 L 100 (279)
Q Consensus 100 ~ 100 (279)
.
T Consensus 484 N 484 (940)
T KOG4661|consen 484 N 484 (940)
T ss_pred c
Confidence 4
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.97 E-value=2.5e-09 Score=92.28 Aligned_cols=84 Identities=25% Similarity=0.354 Sum_probs=74.8
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhc-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANC 95 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~f-G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V 95 (279)
++....-++|..||.-+.|.+|..+|.+| |.|+.+++-+++.||.+||||||+|++.|.|+-|-+.||.. |.++.|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 44566788999999999999999999998 78888888899999999999999999999999999999865 88999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
..-.+.
T Consensus 125 ~vmppe 130 (214)
T KOG4208|consen 125 HVMPPE 130 (214)
T ss_pred EEeCch
Confidence 987544
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.5e-09 Score=100.63 Aligned_cols=80 Identities=18% Similarity=0.404 Sum_probs=74.9
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
....+|||..+..+++|+||+.+|+.||+|+.|.+-+++.++.+|||+||+|.+..+...||..+|- .|.|.-|+|-.+
T Consensus 208 k~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 208 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred HhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999985 499999999877
Q ss_pred c
Q 023634 99 C 99 (279)
Q Consensus 99 ~ 99 (279)
-
T Consensus 288 v 288 (544)
T KOG0124|consen 288 V 288 (544)
T ss_pred c
Confidence 4
No 71
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.95 E-value=1.4e-09 Score=102.58 Aligned_cols=74 Identities=26% Similarity=0.484 Sum_probs=67.0
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
..+.|+|||.|||.++||+.||+-|..||.|+.+.|+. .+++|| .|.|.++++|++||..++. .|+||.|+|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 35778999999999999999999999999999999854 477887 8999999999999999986 49999999976
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=7.1e-10 Score=109.75 Aligned_cols=84 Identities=26% Similarity=0.417 Sum_probs=76.4
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.+.+.++|+|.|||+..+..+++++|..||.|.+|+|++....+.+||||||+|-+.++|.+|++.+.. .|-||+|.++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 344578999999999999999999999999999999998877788899999999999999999999975 4999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
|++..
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99754
No 73
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.93 E-value=3.6e-09 Score=92.46 Aligned_cols=81 Identities=25% Similarity=0.402 Sum_probs=71.6
Q ss_pred CCccEEEECCCCccCcHHHHHH----HHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEK----YFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~----~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~ 94 (279)
.+..||||.||++.+..++|++ +|++||+|.+|+..+ |.+.||=|||.|.+.+.|-.|++.++.. +-|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4455999999999999999988 999999999998865 5778999999999999999999999875 8999999
Q ss_pred EEEcccCCC
Q 023634 95 CNLACLGVQ 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|.+|+...+
T Consensus 84 iqyA~s~sd 92 (221)
T KOG4206|consen 84 IQYAKSDSD 92 (221)
T ss_pred eecccCccc
Confidence 999976543
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.91 E-value=6.3e-09 Score=93.10 Aligned_cols=85 Identities=29% Similarity=0.422 Sum_probs=75.9
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~ 96 (279)
.++..++|.|.||+..+++++|+++|++|++++.+-|..|+ +|++.|.|-|.|...++|++|++.++.+ |+|+.++++
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 55666899999999999999999999999999999888886 6999999999999999999999999766 999999998
Q ss_pred EcccCCC
Q 023634 97 LACLGVQ 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
+......
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 8764433
No 75
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.91 E-value=1e-09 Score=97.40 Aligned_cols=83 Identities=31% Similarity=0.528 Sum_probs=75.4
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~ 96 (279)
.++++.+||++.|..+++++.|.+.|.+|-.....++++|++|+++|||+||.|.|.+++.+|+.+++.. ++.|.|++.
T Consensus 186 w~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklR 265 (290)
T KOG0226|consen 186 WDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLR 265 (290)
T ss_pred CccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhh
Confidence 4567789999999999999999999999999999999999999999999999999999999999999865 888888776
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
....
T Consensus 266 kS~w 269 (290)
T KOG0226|consen 266 KSEW 269 (290)
T ss_pred hhhH
Confidence 6543
No 76
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=6.8e-09 Score=102.91 Aligned_cols=79 Identities=33% Similarity=0.536 Sum_probs=69.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg---~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
+.++|||.||+++++.++|+.+|.+.|.|.++.|.+.++.. .+.|||||+|.+.++|++|++.|+ ..|+|+.|.|+
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk 593 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELK 593 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEE
Confidence 34459999999999999999999999999999988766432 245999999999999999999998 56999999999
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 986
No 77
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.82 E-value=2.2e-08 Score=87.61 Aligned_cols=89 Identities=20% Similarity=0.265 Sum_probs=70.4
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEee-cCCCCCccceEEEEeCCHHHHHHHHHhcCCc-c---CCeeE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVIT-DKATGRSKGYGFVTFREPEAAMKACVDAAPV-I---DGRRA 93 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~-dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i---~Gr~i 93 (279)
...+++|||.+||.+++-.+|..+|..|-..+.+.|.. ++.....+-++||+|.+..+|+.|+.++|.+ + .+..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34689999999999999999999999987766665533 3322334579999999999999999999875 4 36789
Q ss_pred EEEEcccCCCCCCC
Q 023634 94 NCNLACLGVQRSKP 107 (279)
Q Consensus 94 ~V~~a~~~~~~~~~ 107 (279)
++++++...+++++
T Consensus 111 hiElAKSNtK~kr~ 124 (284)
T KOG1457|consen 111 HIELAKSNTKRKRR 124 (284)
T ss_pred EeeehhcCcccccC
Confidence 99999876655543
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.78 E-value=1.1e-08 Score=91.26 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=77.7
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
..+.+.+.+||+|+...++.++++.+|+.||.|..+.|+.|+.++++|||+||+|.+.+.+++++......|.++.++|.
T Consensus 96 ~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 96 QKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPAIEVT 175 (231)
T ss_pred hhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhhcCCcccccccceee
Confidence 56678899999999999999999999999999999999999999999999999999999999999933456999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+.+..
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 88654
No 79
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=2.5e-08 Score=94.86 Aligned_cols=71 Identities=24% Similarity=0.368 Sum_probs=66.9
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEcc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLAC 99 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a~ 99 (279)
..|||| +++||..|.++|+..|.|.+++|.+|. | +-|||||.|.+.++|++||+.+|.. |.|+.|+|.|+.
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~ 73 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQ 73 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhc
Confidence 468999 899999999999999999999999998 6 9999999999999999999999865 999999999985
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.74 E-value=3.7e-08 Score=94.40 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=68.3
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~ 97 (279)
+-.+..-|-+.+|||++|++||++||+.+ .|+.+++.+ ++||..|-|||+|+++|++++|+++....+..|-|+|..
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEec--cCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 33556778889999999999999999999 588866654 479999999999999999999999988778899999987
Q ss_pred cc
Q 023634 98 AC 99 (279)
Q Consensus 98 a~ 99 (279)
+.
T Consensus 83 ~~ 84 (510)
T KOG4211|consen 83 AG 84 (510)
T ss_pred cC
Confidence 73
No 81
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.58 E-value=2e-07 Score=85.98 Aligned_cols=82 Identities=18% Similarity=0.290 Sum_probs=73.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI 88 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--------v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i 88 (279)
+....++|||.|||.++|-+++.++|++||-|.+ |+|-++.. |+.||=|.+.|-.+++++-||+.|+. .|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 3566788999999999999999999999998864 77878765 99999999999999999999999985 59
Q ss_pred CCeeEEEEEccc
Q 023634 89 DGRRANCNLACL 100 (279)
Q Consensus 89 ~Gr~i~V~~a~~ 100 (279)
.|++|+|+.|+-
T Consensus 209 rg~~~rVerAkf 220 (382)
T KOG1548|consen 209 RGKKLRVERAKF 220 (382)
T ss_pred cCcEEEEehhhh
Confidence 999999999974
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.57 E-value=2.2e-08 Score=87.28 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=68.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a 98 (279)
...++|||+||-..++||.|.++|-+-|.|.+|.|..+++ ++.| ||||+|+++-++.-|++.+|.+ +.++.+.|.+-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 3458999999999999999999999999999999998875 5556 9999999999999999999865 88888777664
Q ss_pred c
Q 023634 99 C 99 (279)
Q Consensus 99 ~ 99 (279)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 3
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.54 E-value=1e-07 Score=83.79 Aligned_cols=69 Identities=29% Similarity=0.596 Sum_probs=61.8
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
.+|||++|++.+.+++|++||.+||+|.+|.+. .||+||+|++..+|+.||..++. +|.+.++.|++++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccc
Confidence 579999999999999999999999999999774 46999999999999999999974 5888888888874
No 84
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.50 E-value=8.7e-06 Score=75.52 Aligned_cols=75 Identities=20% Similarity=0.384 Sum_probs=63.9
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANC 95 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V 95 (279)
..-.+|||||-|.+|++||.+.+..-| .|.++++..++.+|++||||+|...+..++++.++.+- ++|.|..-.|
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 334689999999999999988887665 78889999999999999999999999999999999885 5688865444
No 85
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=1.1e-07 Score=92.29 Aligned_cols=72 Identities=26% Similarity=0.339 Sum_probs=63.9
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
.+...++|+|-|||.++++++|+++|+.||+|++|+. |...++..||+|-|..+|++|+++++. +|.|++|+
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 4667789999999999999999999999999999754 344589999999999999999999974 68898877
No 86
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.43 E-value=5.5e-07 Score=83.54 Aligned_cols=86 Identities=27% Similarity=0.268 Sum_probs=76.2
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV 87 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--------v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~ 87 (279)
.+....-+|||-+|+..+++++|.++|.+++.|.. |+|-+|++|++.||-|.|+|+|...|+.||+-++ ..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 34667789999999999999999999999998864 6788899999999999999999999999999886 56
Q ss_pred cCCeeEEEEEcccCC
Q 023634 88 IDGRRANCNLACLGV 102 (279)
Q Consensus 88 i~Gr~i~V~~a~~~~ 102 (279)
+.+..|+|.++....
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999986443
No 87
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.40 E-value=4.8e-07 Score=90.03 Aligned_cols=83 Identities=19% Similarity=0.334 Sum_probs=72.9
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecC---CCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK---ATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk---~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
+|...+.|||+||+..++|+.|...|.+||.|..++|+..+ ...+.+-|+||.|.++.+|++|++.++. ++.+..+
T Consensus 170 gDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~ 249 (877)
T KOG0151|consen 170 GDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEM 249 (877)
T ss_pred CCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeee
Confidence 35678999999999999999999999999999999999765 2345678999999999999999999975 4889999
Q ss_pred EEEEccc
Q 023634 94 NCNLACL 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
++-|.+.
T Consensus 250 K~gWgk~ 256 (877)
T KOG0151|consen 250 KLGWGKA 256 (877)
T ss_pred eeccccc
Confidence 9988854
No 88
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.40 E-value=2.4e-06 Score=66.27 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=65.7
Q ss_pred cEEEECCCCccCcHHHHHHHHHh--cCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc----CCeeEEE
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI----DGRRANC 95 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~--fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i----~Gr~i~V 95 (279)
+||.|+|||...+.++|.+++.+ .|+..-+-++.|..+..+.|||||.|.+.+.+.+-.+..++ .+ ..+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 78999999999999999998854 36788889999999999999999999999999998888753 23 3566677
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
.+|+.
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 77753
No 89
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.28 E-value=2.1e-06 Score=82.49 Aligned_cols=79 Identities=22% Similarity=0.288 Sum_probs=66.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~-v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a 98 (279)
.....|-+++||+.|+|+||.+||+-.--|.+ |.++.|+ .+++.|-|||.|++.|.|++||....+.|.-|-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 45678999999999999999999988754444 4455555 477999999999999999999999888899999999887
Q ss_pred c
Q 023634 99 C 99 (279)
Q Consensus 99 ~ 99 (279)
.
T Consensus 180 s 180 (510)
T KOG4211|consen 180 S 180 (510)
T ss_pred H
Confidence 5
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.23 E-value=1.4e-06 Score=85.15 Aligned_cols=90 Identities=23% Similarity=0.435 Sum_probs=80.5
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCee
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRR 92 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~ 92 (279)
.....-...++|||++||..+++++++++.+.||.++...+++|..++.+|||+|.+|.+.....+||..+|.+ +.+++
T Consensus 281 ~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~ 360 (500)
T KOG0120|consen 281 ASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKK 360 (500)
T ss_pred cccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCce
Confidence 34444567789999999999999999999999999999999999999999999999999999999999999976 88899
Q ss_pred EEEEEcccCCC
Q 023634 93 ANCNLACLGVQ 103 (279)
Q Consensus 93 i~V~~a~~~~~ 103 (279)
|.|..+.....
T Consensus 361 lvvq~A~~g~~ 371 (500)
T KOG0120|consen 361 LVVQRAIVGAS 371 (500)
T ss_pred eEeehhhccch
Confidence 99998865443
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.15 E-value=1.1e-05 Score=60.67 Aligned_cols=67 Identities=15% Similarity=0.270 Sum_probs=47.4
Q ss_pred cEEEECCCCccCcHHH----HHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEE
Q 023634 23 TKVFVGGLAWETQKET----MEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCN 96 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~----L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~ 96 (279)
..|+|.|||.+.+... |+++++.+| +|.+|. .+.|+|.|.+.|.|++|.+.++.+ +.|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 5699999999888654 667777776 666651 358999999999999999999765 999999999
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.07 E-value=1.5e-06 Score=84.46 Aligned_cols=84 Identities=21% Similarity=0.307 Sum_probs=76.0
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
.++.+.++||+--|...+++.+|.+||+.+|+|.+|.|+.|+.++++||.++|+|.|.+++..||...+..+.|..|.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq 253 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQ 253 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEec
Confidence 45567789999999999999999999999999999999999999999999999999999999999777777999998888
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
....
T Consensus 254 ~sEa 257 (549)
T KOG0147|consen 254 LSEA 257 (549)
T ss_pred ccHH
Confidence 7643
No 93
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.01 E-value=6.7e-06 Score=72.20 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=52.0
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
+...+.+|||.||..+++|++||.+|+.|-....++|... . .-..+||+|++.+.|..|+..+.
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~--~--g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR--G--GMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC--C--CcceEeecHHHHHHHHHHHHHhh
Confidence 4467789999999999999999999999987766666322 1 23579999999999999988764
No 94
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.00 E-value=5e-05 Score=71.80 Aligned_cols=73 Identities=14% Similarity=0.252 Sum_probs=65.9
Q ss_pred ccEEEECCCCc-cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEcc
Q 023634 22 YTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (279)
Q Consensus 22 ~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (279)
.+.|.|.||.+ .+|.+.|.-+|..||+|.+|+|+.+| +--|.|.+.|...|+-|++.++ +.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 68899999975 58999999999999999999999886 4579999999999999999997 46999999999986
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.00 E-value=5.4e-06 Score=76.33 Aligned_cols=80 Identities=26% Similarity=0.406 Sum_probs=70.1
Q ss_pred CccEEE-ECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 21 TYTKVF-VGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lf-VgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
...++| |++|+.++++++|+++|..+|+|..+++..++.++..+||++|.|.+......++....+.+.++.+.+...+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALNDQTRSIGGRPLRLEEDE 262 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhcccCcccCcccccccCC
Confidence 334555 9999999999999999999999999999999999999999999999999999988873356888888888774
Q ss_pred c
Q 023634 100 L 100 (279)
Q Consensus 100 ~ 100 (279)
.
T Consensus 263 ~ 263 (285)
T KOG4210|consen 263 P 263 (285)
T ss_pred C
Confidence 3
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=6e-06 Score=72.70 Aligned_cols=72 Identities=22% Similarity=0.344 Sum_probs=62.6
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
..+.+.|+|.+|+..+.|.+|+++|+.+|++....+ .++++||+|++.+++.+||+.++. .|.+++|++..
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 567799999999999999999999999999955544 245999999999999999999975 59999999954
Q ss_pred c
Q 023634 98 A 98 (279)
Q Consensus 98 a 98 (279)
.
T Consensus 168 ~ 168 (216)
T KOG0106|consen 168 N 168 (216)
T ss_pred c
Confidence 4
No 97
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.96 E-value=1.4e-05 Score=63.03 Aligned_cols=70 Identities=29% Similarity=0.410 Sum_probs=44.3
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-----C-ccCCeeEEEE
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-----P-VIDGRRANCN 96 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-----~-~i~Gr~i~V~ 96 (279)
+-|.|.++...++.++|+++|++||.|..|.+.+.. --|+|.|.+.++|++|++.+. . .|.+..++++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~------~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD------TEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC------CEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 468888999999999999999999999999887653 279999999999999998762 1 3777777666
Q ss_pred Ec
Q 023634 97 LA 98 (279)
Q Consensus 97 ~a 98 (279)
.-
T Consensus 76 vL 77 (105)
T PF08777_consen 76 VL 77 (105)
T ss_dssp --
T ss_pred EC
Confidence 54
No 98
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.83 E-value=2.1e-05 Score=74.63 Aligned_cols=69 Identities=22% Similarity=0.232 Sum_probs=58.7
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeec---CCCC--C--------ccceEEEEeCCHHHHHHHHHhcC
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD---KATG--R--------SKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~d---k~tg--~--------skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
+.+.++|.+.|||.+-.-+.|.++|..+|.|+.|+|++- +.+. . .+-||||+|++.+.|.+|.+.++
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 358899999999999989999999999999999999875 3221 1 25689999999999999999987
Q ss_pred Cc
Q 023634 86 PV 87 (279)
Q Consensus 86 ~~ 87 (279)
.+
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 54
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.75 E-value=7.2e-05 Score=51.60 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=41.9
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai 81 (279)
+.|-|.+.+.+..+ ++.++|.+||+|.++.+..+ +-+.+|+|+++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 56788888877654 45558889999999988633 348999999999999985
No 100
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.68 E-value=3.3e-05 Score=73.03 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=60.9
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeeEEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRANCNL 97 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~Gr~i~V~~ 97 (279)
..+.|.++||||+++|+||-+++..||+|..+.+++.++ -+|++|+|+++|..-+.... ..+.++.|-|.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~ 100 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQY 100 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeehh
Confidence 568899999999999999999999999999999887654 79999999999887544332 358888888777
Q ss_pred cc
Q 023634 98 AC 99 (279)
Q Consensus 98 a~ 99 (279)
+.
T Consensus 101 sn 102 (492)
T KOG1190|consen 101 SN 102 (492)
T ss_pred hh
Confidence 53
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.67 E-value=0.00013 Score=73.06 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=67.6
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
.+...-++.|-|.|+|++++.|||.+||..|-.+..-.+++-.+.|+..|-|.|.|++.++|.+|.+.++. .|..|+|.
T Consensus 861 ~~~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~ 940 (944)
T KOG4307|consen 861 LIKSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVS 940 (944)
T ss_pred hcCCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEE
Confidence 34455566899999999999999999999997665544455456799999999999999999999999975 58888887
Q ss_pred EEE
Q 023634 95 CNL 97 (279)
Q Consensus 95 V~~ 97 (279)
+.+
T Consensus 941 l~i 943 (944)
T KOG4307|consen 941 LRI 943 (944)
T ss_pred EEe
Confidence 764
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00019 Score=69.76 Aligned_cols=66 Identities=33% Similarity=0.389 Sum_probs=60.7
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHH-hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~-~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
-+..+|||||+||.-++.++|..+|+ -||.|+-+-|-.|++-.-.||-|=|+|.+..+-.+||++-
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISAR 433 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhh
Confidence 34668999999999999999999998 6999999999999777889999999999999999999964
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.57 E-value=0.00025 Score=62.37 Aligned_cols=75 Identities=23% Similarity=0.302 Sum_probs=61.4
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC-CeeEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID-GRRANCN 96 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~-Gr~i~V~ 96 (279)
-.....||+.|||.+++.+.|..+|++|...++|+++..+ ++.+||+|.+...+..|...+.. .|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 3566899999999999999999999999999999998764 67999999999888888887753 233 5556665
Q ss_pred Ec
Q 023634 97 LA 98 (279)
Q Consensus 97 ~a 98 (279)
.+
T Consensus 218 ~a 219 (221)
T KOG4206|consen 218 FA 219 (221)
T ss_pred cc
Confidence 54
No 104
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.57 E-value=0.00021 Score=69.42 Aligned_cols=65 Identities=26% Similarity=0.464 Sum_probs=50.0
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCC---CCCccc---eEEEEeCCHHHHHHHHHhc
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKG---YGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~---tg~skG---~aFV~F~~~e~A~~Ai~~~ 84 (279)
..-.++||||+|||+++|++|...|..||.+.- ......+ ---.+| |.|+.|+++.++.+-|.+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 345689999999999999999999999998743 3332111 123567 9999999999988877665
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.39 E-value=0.0004 Score=64.48 Aligned_cols=77 Identities=22% Similarity=0.419 Sum_probs=58.8
Q ss_pred cEEEECCCCccCcHHH----H--HHHHHhcCCEEEEEEeecCCCC-CccceE--EEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 23 TKVFVGGLAWETQKET----M--EKYFEQFGEILEAVVITDKATG-RSKGYG--FVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~----L--~~~F~~fG~I~~v~i~~dk~tg-~skG~a--FV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
.-+||-+|++.+-.|+ | .++|.+||+|.+|.|.+...+- ...+.+ +|+|.+.|+|.+||.+.+. .+|||.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4578999988776655 3 5899999999999886543111 112223 9999999999999999875 599999
Q ss_pred EEEEEcc
Q 023634 93 ANCNLAC 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
|++.+..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9988764
No 106
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.38 E-value=0.0017 Score=55.87 Aligned_cols=62 Identities=21% Similarity=0.213 Sum_probs=55.5
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
.......+|.|.+||.+.+|++||++..+-|+|+...+.+| |.+.|+|...|+.+-||..+.
T Consensus 110 psrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld 171 (241)
T KOG0105|consen 110 PSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLD 171 (241)
T ss_pred cccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhc
Confidence 33445678999999999999999999999999999999887 489999999999999999885
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.35 E-value=0.00079 Score=52.57 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=52.4
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEE-EeecC------CCCCccceEEEEeCCHHHHHHHHHhcCCccCCe-
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAV-VITDK------ATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR- 91 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~-i~~dk------~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr- 91 (279)
...+-|.|-+.|.+ ....+.+.|++||+|.+.. +.++. ........--|+|+++.+|++||.+....|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 34566888889988 4667788899999998875 11110 001224588999999999999999988888875
Q ss_pred eEEEEEcc
Q 023634 92 RANCNLAC 99 (279)
Q Consensus 92 ~i~V~~a~ 99 (279)
.+-|.+++
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 55677764
No 108
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.21 E-value=0.002 Score=60.58 Aligned_cols=79 Identities=16% Similarity=0.218 Sum_probs=68.7
Q ss_pred CCCCCCccEEEECCCCcc-CcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeE
Q 023634 16 QFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i 93 (279)
+-+..+.+.+.|-+|... ++-+.|..+|..||.|++|++++.| .|-|.|+..|..++++||..||.. +-|.+|
T Consensus 281 p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl 355 (494)
T KOG1456|consen 281 PGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKL 355 (494)
T ss_pred CCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceE
Confidence 345567789999999854 6778899999999999999999886 578999999999999999999754 899999
Q ss_pred EEEEcc
Q 023634 94 NCNLAC 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+|..++
T Consensus 356 ~v~~Sk 361 (494)
T KOG1456|consen 356 NVCVSK 361 (494)
T ss_pred EEeecc
Confidence 988875
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.0021 Score=63.20 Aligned_cols=78 Identities=23% Similarity=0.263 Sum_probs=61.2
Q ss_pred CCccEEEECCCCccC--cH----HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-c-CCe
Q 023634 20 TTYTKVFVGGLAWET--QK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-I-DGR 91 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~--te----e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i-~Gr 91 (279)
--+..|+|-|+|.-- .. .-|.++|+++|+|..+.++.+..+| .+||.|++|++..+|+.|++.+++. | ..+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknH 134 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNH 134 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccc
Confidence 455788999998532 22 2367899999999999999887655 9999999999999999999998743 4 456
Q ss_pred eEEEEEc
Q 023634 92 RANCNLA 98 (279)
Q Consensus 92 ~i~V~~a 98 (279)
++.|+.-
T Consensus 135 tf~v~~f 141 (698)
T KOG2314|consen 135 TFFVRLF 141 (698)
T ss_pred eEEeehh
Confidence 6666654
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.09 E-value=0.0007 Score=63.83 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=63.3
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCC-EEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEE
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGE-ILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~-I~~--v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~ 97 (279)
..-|-+++||.+.+.|+|.+||..|-. |+. |.++.+. .|+..|-|||+|.++|+|..|..+.++. ...|-|+|..
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 345788999999999999999998863 333 6666664 5899999999999999999999888655 5688899888
Q ss_pred cc
Q 023634 98 AC 99 (279)
Q Consensus 98 a~ 99 (279)
++
T Consensus 359 ~S 360 (508)
T KOG1365|consen 359 CS 360 (508)
T ss_pred cc
Confidence 74
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.83 E-value=0.00085 Score=63.26 Aligned_cols=73 Identities=23% Similarity=0.283 Sum_probs=55.6
Q ss_pred ccEEEECCCCccCcHHHHHHHHHh---c-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEE
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQ---F-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~---f-G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V 95 (279)
.--|-+++||.++++.++.+||.. . +..+.|-+++.+ .||..|-|||.|..+++|+.||.+....|..|-|++
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIEl 237 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIEL 237 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667899999999999999952 2 244555555443 588999999999999999999998765566555544
No 112
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.79 E-value=0.0046 Score=51.36 Aligned_cols=75 Identities=21% Similarity=0.265 Sum_probs=52.4
Q ss_pred CCccEEEECCCC------ccCcH---HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC
Q 023634 20 TTYTKVFVGGLA------WETQK---ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (279)
Q Consensus 20 ~~~~~lfVgnLp------~~~te---e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~G 90 (279)
..+-+|.|.=+. ....+ ++|.+.|..||++.-++++.+ .-.|+|.+-++|.+|+......|+|
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g 96 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNG 96 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETT
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECC
Confidence 344566666444 12222 367788889999988888765 4899999999999999998888999
Q ss_pred eeEEEEEcccCC
Q 023634 91 RRANCNLACLGV 102 (279)
Q Consensus 91 r~i~V~~a~~~~ 102 (279)
+.|+|+++.+..
T Consensus 97 ~~l~i~LKtpdW 108 (146)
T PF08952_consen 97 RTLKIRLKTPDW 108 (146)
T ss_dssp EEEEEEE-----
T ss_pred EEEEEEeCCccH
Confidence 999999987543
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.73 E-value=0.00078 Score=68.90 Aligned_cols=83 Identities=13% Similarity=0.230 Sum_probs=70.0
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEccc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLACL 100 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a~~ 100 (279)
..+|||.|+|+..|.++|+.+|.++|.+.++.++..+ .|+.+|.+||.|.++.++.+++...... +.-+.++|....+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 4689999999999999999999999999999988876 5999999999999999999998877643 6666777777655
Q ss_pred CCCCC
Q 023634 101 GVQRS 105 (279)
Q Consensus 101 ~~~~~ 105 (279)
..+++
T Consensus 815 ~~~K~ 819 (881)
T KOG0128|consen 815 ERDKK 819 (881)
T ss_pred ccccc
Confidence 43333
No 114
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.66 E-value=0.0071 Score=56.45 Aligned_cols=76 Identities=25% Similarity=0.327 Sum_probs=60.3
Q ss_pred CCccEEEECCCC--c--cCc-------HHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-
Q 023634 20 TTYTKVFVGGLA--W--ETQ-------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV- 87 (279)
Q Consensus 20 ~~~~~lfVgnLp--~--~~t-------ee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~- 87 (279)
...++|.|.||= . ..+ +++|++-.++||.|.+|+|. | ..+.|.+-|.|.+.++|..||+.|++.
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~-d---~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVY-D---RHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEe-c---cCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 456788898872 1 222 45677888999999999775 3 246899999999999999999999865
Q ss_pred cCCeeEEEEEcc
Q 023634 88 IDGRRANCNLAC 99 (279)
Q Consensus 88 i~Gr~i~V~~a~ 99 (279)
++||+|..++..
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999888763
No 115
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.60 E-value=0.0019 Score=58.01 Aligned_cols=72 Identities=15% Similarity=0.267 Sum_probs=59.1
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCC--------CCcc----ceEEEEeCCHHHHHHHHHhcCCc-
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT--------GRSK----GYGFVTFREPEAAMKACVDAAPV- 87 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t--------g~sk----G~aFV~F~~~e~A~~Ai~~~~~~- 87 (279)
..-.||+++||+.++-..|+++|++||+|-.|.|-....+ +.++ --|.|+|.+...|+++.+.||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4468999999999999999999999999999988776554 2222 23679999999999998888754
Q ss_pred cCCee
Q 023634 88 IDGRR 92 (279)
Q Consensus 88 i~Gr~ 92 (279)
|.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 77765
No 116
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.58 E-value=0.013 Score=48.55 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=61.1
Q ss_pred CCCCCCCccEEEECCCCccCc-HHHHH---HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC
Q 023634 15 GQFGDTTYTKVFVGGLAWETQ-KETME---KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~t-ee~L~---~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~G 90 (279)
....|....+|.|.=|..++. .|||+ ..++.||.|.+|.+.- |--|.|.|+|..+|=+|+.+.....-|
T Consensus 79 k~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pg 151 (166)
T PF15023_consen 79 KNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPG 151 (166)
T ss_pred ccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCC
Confidence 345577888999987777654 24444 5557899999997642 336999999999999999999888999
Q ss_pred eeEEEEEc
Q 023634 91 RRANCNLA 98 (279)
Q Consensus 91 r~i~V~~a 98 (279)
..+.|+|-
T Consensus 152 tm~qCsWq 159 (166)
T PF15023_consen 152 TMFQCSWQ 159 (166)
T ss_pred ceEEeecc
Confidence 99999986
No 117
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.57 E-value=0.014 Score=41.62 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=46.8
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhc---CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~f---G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
....+|+|.+|. +++-++|+.+|..| .....|..+.|. -|=|.|.+.+.|.+||.+|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 345689999995 58889999999988 235678888886 4889999999999999864
No 118
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.54 E-value=0.0032 Score=59.56 Aligned_cols=79 Identities=15% Similarity=0.153 Sum_probs=63.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t---g~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
.....|-|.||.+.++.+++..||.-.|+|.++.|..+... ....-.|||.|.|...+..|-...|.++-++.|.|.
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 34458999999999999999999999999999988764321 234568999999999998888877877666666666
Q ss_pred Ec
Q 023634 97 LA 98 (279)
Q Consensus 97 ~a 98 (279)
..
T Consensus 85 p~ 86 (479)
T KOG4676|consen 85 PY 86 (479)
T ss_pred ec
Confidence 54
No 119
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.50 E-value=0.0079 Score=59.22 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCCEEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 37 ETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~t---g~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
|+++..+.+||.|..|+|.++-.. .-..|.-||+|++.+++++|.++|++ .+.+|.|.+.+-.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 345666678999999999887222 22356789999999999999999975 5999999888753
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.46 E-value=0.00014 Score=74.13 Aligned_cols=71 Identities=25% Similarity=0.352 Sum_probs=61.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG 90 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~G 90 (279)
.+.+++||.||+..+.+++|+..|..++.|..+.|.-.+++++.||.|+|+|.+.+++.+||+.....+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 34568999999999999999999999999988887766778999999999999999999999977654433
No 121
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.29 E-value=0.0021 Score=57.68 Aligned_cols=60 Identities=28% Similarity=0.316 Sum_probs=47.9
Q ss_pred HHHHHH-hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 39 MEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 39 L~~~F~-~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
|...|+ +||+|++++|..+. .-.-+|=.+|.|..+++|++|++.+|. -+.|+.|.+++..
T Consensus 85 ~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 85 VFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 333344 89999999776553 345578899999999999999999975 4999999988875
No 122
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.25 E-value=0.0045 Score=55.61 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=56.2
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
..|+|.||..-++.|.|++-|++||+|+..+++.|- .++..+-++|.|...-.+.+|+....
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhc
Confidence 789999999999999999999999999998877774 47888899999999999999998874
No 123
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.08 E-value=0.013 Score=55.27 Aligned_cols=80 Identities=23% Similarity=0.265 Sum_probs=65.1
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc--CCc-cCC
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA--APV-IDG 90 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~--~~~-i~G 90 (279)
.++......-.|.|++|-..++|.+|.+-++.||.|.-+.++..+ .-+.|+|+|.+.|+.++... +.. |.|
T Consensus 23 ~dphk~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~------r~alvefedi~~akn~Vnfaa~n~i~i~g 96 (494)
T KOG1456|consen 23 ADPHKPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHK------RQALVEFEDIEGAKNCVNFAADNQIYIAG 96 (494)
T ss_pred CCCCCCCCCceEEEeccccccchhHHHHHHhcCCceEEEEecccc------ceeeeeeccccchhhheehhccCcccccC
Confidence 344455566789999999999999999999999999998777654 37999999999999988754 443 888
Q ss_pred eeEEEEEcc
Q 023634 91 RRANCNLAC 99 (279)
Q Consensus 91 r~i~V~~a~ 99 (279)
+..-++++.
T Consensus 97 q~Al~NySt 105 (494)
T KOG1456|consen 97 QQALFNYST 105 (494)
T ss_pred chhhcccch
Confidence 888777773
No 124
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.99 E-value=0.02 Score=43.13 Aligned_cols=54 Identities=19% Similarity=0.246 Sum_probs=40.7
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
...+|. +|.++...||.++|+.||.| .|..+.|. -|||...+++.|..++..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 344555 99999999999999999998 45555554 69999999999999888765
No 125
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.85 E-value=0.0055 Score=58.58 Aligned_cols=75 Identities=21% Similarity=0.324 Sum_probs=57.2
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC--ccCCeeEEEEEcc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDGRRANCNLAC 99 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~--~i~Gr~i~V~~a~ 99 (279)
.+||++||.+.++-++|+.+|...- ....-.++ ..||+||...+...|.+|++.++. ++.|++++|+..-
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~-------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee-------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 5799999999999999999996431 01111122 257999999999999999999974 4899999998875
Q ss_pred cCCCC
Q 023634 100 LGVQR 104 (279)
Q Consensus 100 ~~~~~ 104 (279)
+...+
T Consensus 75 ~kkqr 79 (584)
T KOG2193|consen 75 PKKQR 79 (584)
T ss_pred hHHHH
Confidence 44333
No 126
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.84 E-value=0.012 Score=57.98 Aligned_cols=72 Identities=13% Similarity=0.182 Sum_probs=59.2
Q ss_pred CCccEEEECCCCccCcHHHHHHHHH--hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeeEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFE--QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRAN 94 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~--~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~Gr~i~ 94 (279)
.+.|.|.|+.|++.+-+|++|.||+ .+-++.+|.+-.+. -=||+|++.+||++|.+.+. ++|.|+.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4667888999999999999999995 47788888876653 26999999999999999885 358898876
Q ss_pred EEEc
Q 023634 95 CNLA 98 (279)
Q Consensus 95 V~~a 98 (279)
.+++
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 5554
No 127
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.82 E-value=0.029 Score=51.49 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=48.7
Q ss_pred HHHHHHHHHhcCCEEEEEEeecCCCCCcc-ceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEE
Q 023634 36 KETMEKYFEQFGEILEAVVITDKATGRSK-GYGFVTFREPEAAMKACVDAAPV-IDGRRANCNL 97 (279)
Q Consensus 36 ee~L~~~F~~fG~I~~v~i~~dk~tg~sk-G~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~ 97 (279)
|+++++.+++||+|..|.|..++.....+ ---||+|+..++|.+|+..+|.. +.||.++.-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 46788999999999999888876433322 23699999999999999999865 8888765433
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.37 E-value=0.015 Score=58.80 Aligned_cols=80 Identities=16% Similarity=0.086 Sum_probs=61.9
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRA 93 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~-v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i 93 (279)
++...-...|||..||..+++.++-++|.+--.|++ |.|-+-+ +++.++.|||+|..++++.+|+....+. +.-|.|
T Consensus 428 p~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~i 506 (944)
T KOG4307|consen 428 PFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRII 506 (944)
T ss_pred CCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEE
Confidence 344455678999999999999999999998877877 5554443 6778899999999988888877765443 666666
Q ss_pred EEE
Q 023634 94 NCN 96 (279)
Q Consensus 94 ~V~ 96 (279)
+|.
T Consensus 507 rv~ 509 (944)
T KOG4307|consen 507 RVD 509 (944)
T ss_pred Eee
Confidence 665
No 129
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.82 E-value=0.033 Score=57.72 Aligned_cols=78 Identities=24% Similarity=0.344 Sum_probs=65.3
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cC--CeeEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-ID--GRRAN 94 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~--Gr~i~ 94 (279)
.....+.+||++|..++....|.+.|..||.|..|.+-.. .-|++|.+++...+..|++.+... |. .+++.
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 3456689999999999999999999999999999877443 459999999999999999998654 54 37789
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|.++...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9988643
No 130
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.51 E-value=0.028 Score=54.49 Aligned_cols=75 Identities=19% Similarity=0.164 Sum_probs=58.1
Q ss_pred CccEEEECCCCccC-cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~-tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
+.+.|-+.-.+... +.++|..+|.+||+|..|.|-.... -|.|+|.+..+|-+|-......|++|.|+|.|-+
T Consensus 371 dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 371 DHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLFWHN 444 (526)
T ss_pred ccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEEEec
Confidence 44555555555543 4688999999999999998855422 6999999999987777666667999999999987
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
+.
T Consensus 445 ps 446 (526)
T KOG2135|consen 445 PS 446 (526)
T ss_pred CC
Confidence 63
No 131
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.38 E-value=0.016 Score=53.92 Aligned_cols=78 Identities=27% Similarity=0.415 Sum_probs=56.4
Q ss_pred ccEEEECCCCccCcHHH-H--HHHHHhcCCEEEEEEeecCC--CCC-ccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEE
Q 023634 22 YTKVFVGGLAWETQKET-M--EKYFEQFGEILEAVVITDKA--TGR-SKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~-L--~~~F~~fG~I~~v~i~~dk~--tg~-skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~ 94 (279)
...+||-+|+..+..++ | .+.|.+||.|.+|.+.++.. ... ...-++|+|++.|+|..||...+.+ ++++.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 35678888887765544 4 46788999999998888762 111 1123799999999999999999765 7777766
Q ss_pred EEEcc
Q 023634 95 CNLAC 99 (279)
Q Consensus 95 V~~a~ 99 (279)
+.+..
T Consensus 157 a~~gt 161 (327)
T KOG2068|consen 157 ASLGT 161 (327)
T ss_pred HhhCC
Confidence 55543
No 132
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.35 E-value=0.16 Score=46.95 Aligned_cols=70 Identities=20% Similarity=0.235 Sum_probs=51.7
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCee-EEEEEc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR-ANCNLA 98 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~-i~V~~a 98 (279)
+.=|-|-+++..-. .-|..+|++||+|++.+... +--+-.|.|.++.+|+|||.+...+|++.. |-|+.+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 44555567766543 45677899999998876542 234899999999999999999888888754 455554
No 133
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.20 E-value=0.012 Score=60.83 Aligned_cols=67 Identities=16% Similarity=0.289 Sum_probs=56.1
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
+....++||++||+..+++.+|+..|..+|.|.+|.|-+-+. ++-.-++||.|.+.+.+-+|+..+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s 434 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEES 434 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhc
Confidence 345678999999999999999999999999999998865532 3334589999999999988888774
No 134
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.35 E-value=0.082 Score=52.69 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=60.2
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHH-hcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc----cCCeeE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFE-QFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV----IDGRRA 93 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~-~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~----i~Gr~i 93 (279)
......|+|.||-.-.|.-+|++++. ..|.|++.+| |+. |-.|||.|.+.++|...+.+|+.+ -+.+.|
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkI----KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKI----KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHh----hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 34567899999999999999999998 4667777744 332 568999999999999999999754 366888
Q ss_pred EEEEcc
Q 023634 94 NCNLAC 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
.+.+..
T Consensus 515 ~adf~~ 520 (718)
T KOG2416|consen 515 IADFVR 520 (718)
T ss_pred Eeeecc
Confidence 888774
No 135
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=93.26 E-value=0.077 Score=49.01 Aligned_cols=79 Identities=20% Similarity=0.250 Sum_probs=67.1
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..+++|++++.+.+.+.++..++.+.|.+..+.+........+++++.|+|+..+.+..|++.... .+.++.+...+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 578999999999999999999999999888888877777888999999999999999999998764 5666666555543
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.17 E-value=0.57 Score=34.14 Aligned_cols=66 Identities=18% Similarity=0.229 Sum_probs=38.9
Q ss_pred EEEEC-CCCccCcHHHHHHHHHhcC-----CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 24 KVFVG-GLAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 24 ~lfVg-nLp~~~tee~L~~~F~~fG-----~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
+|||. +=-..++..+|..++..-. +|-+|+|..+ |.||+-.. +.++++++.++. .+.|++++|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45553 2335678888988887664 4556777544 89999865 478889999875 5999999998
Q ss_pred Ec
Q 023634 97 LA 98 (279)
Q Consensus 97 ~a 98 (279)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 75
No 137
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.91 E-value=0.11 Score=52.26 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=60.7
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.-....++||+||-..+..+-++.+...+|-|..++.++ |+|.+|.+.....+|+..+.. .+++..+.++
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 334567999999999999999999999999998876543 999999999999999998875 4888887666
Q ss_pred Ec
Q 023634 97 LA 98 (279)
Q Consensus 97 ~a 98 (279)
..
T Consensus 107 ~d 108 (668)
T KOG2253|consen 107 VD 108 (668)
T ss_pred ch
Confidence 53
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.57 E-value=0.58 Score=40.48 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=43.5
Q ss_pred cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC--Cc-cCCeeEEEEEcc
Q 023634 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA--PV-IDGRRANCNLAC 99 (279)
Q Consensus 35 tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~--~~-i~Gr~i~V~~a~ 99 (279)
..+.|+++|..++.+....+++.- +=..|.|.+.++|.+|...++ .. +.|.+++|.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 457899999999999888777653 357899999999999999987 54 999999998884
No 139
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=91.43 E-value=0.2 Score=43.00 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=45.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHh-cCCE---EEEEEeecC-CCC-CccceEEEEeCCHHHHHHHHHhcCC-c-cCC-
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQ-FGEI---LEAVVITDK-ATG-RSKGYGFVTFREPEAAMKACVDAAP-V-IDG- 90 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~-fG~I---~~v~i~~dk-~tg-~skG~aFV~F~~~e~A~~Ai~~~~~-~-i~G- 90 (279)
....+|.|++||+.+||+++.+.++. ++.. ..+.-.... ... ..-.-|+|.|.+.+++..-+...+. . ++.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999999886665 5554 333311221 111 1234689999999998888888764 2 332
Q ss_pred ---eeEEEEEcc
Q 023634 91 ---RRANCNLAC 99 (279)
Q Consensus 91 ---r~i~V~~a~ 99 (279)
.+..|++|.
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 234566663
No 140
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=91.17 E-value=3.8 Score=32.48 Aligned_cols=63 Identities=16% Similarity=0.143 Sum_probs=46.4
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 86 (279)
...+.+...|.-++.++|..+.+.+- .|..++|++|. ..++=...++|.+.++|++-.+..|+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCC
Confidence 33444455666677778877666654 67788998874 34667899999999999999998874
No 141
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.42 E-value=0.22 Score=51.58 Aligned_cols=74 Identities=16% Similarity=0.177 Sum_probs=61.8
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc--cCCeeEEEEEcc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV--IDGRRANCNLAC 99 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~--i~Gr~i~V~~a~ 99 (279)
.+..+.|.+-..+...|..+|++||+|.+++.++|-+ .+.|+|.+.+.|..|++++. ++ +.|-..+|.+++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4556667777788899999999999999999988865 89999999999999999985 33 677888999987
Q ss_pred cCC
Q 023634 100 LGV 102 (279)
Q Consensus 100 ~~~ 102 (279)
...
T Consensus 373 ~~~ 375 (1007)
T KOG4574|consen 373 TLP 375 (1007)
T ss_pred ccc
Confidence 543
No 142
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=89.80 E-value=5.3 Score=40.97 Aligned_cols=68 Identities=9% Similarity=-0.001 Sum_probs=46.3
Q ss_pred cEEEEC-CCCccCcHHHHHHHHHhcCCEE-----EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 23 TKVFVG-GLAWETQKETMEKYFEQFGEIL-----EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 23 ~~lfVg-nLp~~~tee~L~~~F~~fG~I~-----~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
.++||. +=...++..+|-.++..-+.|. .|+|..+ |.||+... +.+.+.++.++. .+.|++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~--------~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFAS--------HSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeCC--------ceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 345553 2334577778877776655443 4555433 89999864 457788888854 599999999
Q ss_pred EEcc
Q 023634 96 NLAC 99 (279)
Q Consensus 96 ~~a~ 99 (279)
+.++
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9874
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.82 E-value=0.53 Score=46.67 Aligned_cols=54 Identities=19% Similarity=0.170 Sum_probs=39.5
Q ss_pred cCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC----ccCCe-eEEEEEcc
Q 023634 46 FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP----VIDGR-RANCNLAC 99 (279)
Q Consensus 46 fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~----~i~Gr-~i~V~~a~ 99 (279)
.|.-..+.++.|-.+..+.|||||.|.+.+++.++.++.+. .++.+ .+++.+|+
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 45555566777777778899999999999999999998764 24443 34555554
No 144
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=82.89 E-value=0.27 Score=43.59 Aligned_cols=68 Identities=26% Similarity=0.291 Sum_probs=57.1
Q ss_pred CCCCCCCccEEEECC----CCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHh
Q 023634 15 GQFGDTTYTKVFVGG----LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (279)
Q Consensus 15 ~~~~d~~~~~lfVgn----Lp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~ 83 (279)
+-++++...++++|+ |...++++.+.+.|++-+.|+.+++.++.+ ++++-++||++-.....-.++..
T Consensus 73 ~l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 73 DLEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred hhccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhh
Confidence 345667788999999 999999999999999999999999999876 88999999988666655555554
No 145
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=80.69 E-value=0.21 Score=47.68 Aligned_cols=61 Identities=16% Similarity=0.067 Sum_probs=50.3
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~ 87 (279)
++|+|++|+..+...++-++|+.+|+|....+-.. -..-+|-|+|....+...|++.++.+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask----~~s~~c~~sf~~qts~~halr~~gre 212 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASK----SRSSSCSHSFRKQTSSKHALRSHGRE 212 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhcc----CCCcchhhhHhhhhhHHHHHHhcchh
Confidence 88999999999999999999999999987765432 23457779999999888888877644
No 146
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.90 E-value=6.7 Score=36.32 Aligned_cols=83 Identities=10% Similarity=0.148 Sum_probs=63.7
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecC-------CCCCccceEEEEeCCHHHHHHH----HHhc--
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-------ATGRSKGYGFVTFREPEAAMKA----CVDA-- 84 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk-------~tg~skG~aFV~F~~~e~A~~A----i~~~-- 84 (279)
++...|.|.+.||..+++-.++-..|.+||.|+.|.++.+. +..+......+.|-+++.+..- ++++
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsE 90 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSE 90 (309)
T ss_pred ccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHH
Confidence 44567889999999999998999999999999999999875 1233456788999999887654 3333
Q ss_pred -CCccCCeeEEEEEccc
Q 023634 85 -APVIDGRRANCNLACL 100 (279)
Q Consensus 85 -~~~i~Gr~i~V~~a~~ 100 (279)
...|.-..|++++...
T Consensus 91 fK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 91 FKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHhcCCcceeEEEEEE
Confidence 2347888888887764
No 147
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=77.20 E-value=6.1 Score=28.47 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=42.9
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEc
Q 023634 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (279)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (279)
++|++-|...| +|.++.-++.+.+.+.--.-||+.+...+.. +.++ ..|++.+|+|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~ 62 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERP 62 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecC
Confidence 56777787777 7888888888767777788899887655422 2333 3488999888876
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.69 E-value=9.1 Score=35.42 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=36.6
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHH
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPE 75 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e 75 (279)
-.+.|+|+||+.++.-.||+..+.+.+.+ -..|-.. -++|-||++|.++.
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk----g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK----GHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCC-ceeEeee----cCCcceeEecCCcc
Confidence 34569999999999999999999887643 2223221 24667999997754
No 149
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=74.13 E-value=16 Score=26.17 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=37.7
Q ss_pred cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEE
Q 023634 33 ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (279)
Q Consensus 33 ~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~ 94 (279)
.++-++|+..+.+|.- .+ |+.|+ .| =||.|.+.++|+++.+..+.. +...++.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~--I~~d~-----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DR--IRDDR-----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ce--EEecC-----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 4678899999999853 33 34454 23 489999999999999987643 5444443
No 150
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=73.78 E-value=7 Score=28.39 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=43.3
Q ss_pred HHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEc
Q 023634 37 ETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (279)
Q Consensus 37 e~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (279)
++|++-|.+.| +++.+..+..++++..--.-||+.....+-.. .++ +.|++++++|+..
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 46788888887 88899988888877777888888876543322 233 3488999888865
No 151
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=70.32 E-value=9 Score=30.59 Aligned_cols=45 Identities=16% Similarity=0.231 Sum_probs=27.2
Q ss_pred cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHH
Q 023634 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACV 82 (279)
Q Consensus 35 tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~-~e~A~~Ai~ 82 (279)
+.++|++.|+.|..++ ++.+.++. -++|+++|+|.+ ..--..|++
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~--gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQ--GHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETT--EEEEEEEEE--SSHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCC--CCcEEEEEEECCChHHHHHHHH
Confidence 4578999999998764 66666653 578999999974 444445544
No 152
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.38 E-value=12 Score=36.16 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=47.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
.-...|=|-++|.....+||...|+.|+ .-.+|+++.|+ .+|-.|.+...|..||-.-
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~k 447 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLK 447 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhcc
Confidence 3457788999999999999999999986 44567777775 6999999999998888763
No 153
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=66.15 E-value=23 Score=34.78 Aligned_cols=63 Identities=11% Similarity=0.151 Sum_probs=52.4
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhc-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~f-G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 86 (279)
.+.|+|=.+|..++-.||-.|...| -.|.+++|++|.. .++=..+|+|.+.++|..-.+..|+
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC
Confidence 7889999999999999998888654 5789999999753 2344689999999999999998874
No 154
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=65.08 E-value=14 Score=26.26 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCEEEEEEe
Q 023634 37 ETMEKYFEQFGEILEAVVI 55 (279)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~ 55 (279)
.+||++|+..|+|.-+-+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5799999999999776553
No 155
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=62.71 E-value=1.5 Score=30.36 Aligned_cols=37 Identities=22% Similarity=0.353 Sum_probs=22.6
Q ss_pred ccceEEEEeCC-HHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 63 SKGYGFVTFRE-PEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 63 skG~aFV~F~~-~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
++|||||.-++ .++.--.-+.++..++|-++.|++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 58999999987 22222233455667899999998875
No 156
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=60.99 E-value=1.1 Score=43.28 Aligned_cols=74 Identities=15% Similarity=0.176 Sum_probs=58.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEE-eecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEEEEEc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVV-ITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRANCNLA 98 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i-~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~V~~a 98 (279)
..++|-|.|+|....|+-|..|+.++|.++.|.. ..|.++- .--|++...+.++.||..+++. +....++|.+-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta----vvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA----VVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH----HHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 4578999999999999999999999999998854 3343321 2236788899999999999754 88888888775
No 157
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=54.94 E-value=19 Score=30.56 Aligned_cols=60 Identities=22% Similarity=0.310 Sum_probs=43.0
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHH
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEA 76 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~ 76 (279)
........+++.+++..++++++..+|..++.+..+.+...........+.++.+.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (306)
T COG0724 220 LLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKD 279 (306)
T ss_pred ccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHh
Confidence 345677899999999999999999999999999777776654433334444444433333
No 158
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=53.45 E-value=2.1 Score=42.66 Aligned_cols=66 Identities=15% Similarity=0.128 Sum_probs=49.5
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
-..|+|||.|++++++-++|+.+++.+--+..+.+-.+....+.+.+..|+|+--.....||.+++
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 456899999999999999999999988767776655443334456788999976666666666554
No 159
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=51.96 E-value=1.1e+02 Score=33.16 Aligned_cols=8 Identities=50% Similarity=1.547 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 023634 127 FQNGGFGG 134 (279)
Q Consensus 127 ~~~gG~GG 134 (279)
+.+||+|+
T Consensus 1189 ysgGGYGg 1196 (1282)
T KOG0921|consen 1189 YSGGGYGG 1196 (1282)
T ss_pred CCCCCcCC
Confidence 33344433
No 160
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=50.31 E-value=16 Score=33.73 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=27.5
Q ss_pred CccEEEECCCCcc------------CcHHHHHHHHHhcCCEEEEEEe
Q 023634 21 TYTKVFVGGLAWE------------TQKETMEKYFEQFGEILEAVVI 55 (279)
Q Consensus 21 ~~~~lfVgnLp~~------------~tee~L~~~F~~fG~I~~v~i~ 55 (279)
...+|++.+||-. -+|+.|+..|+.||+|..|.|+
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 3457888888732 3577899999999999998775
No 161
>PRK11901 hypothetical protein; Reviewed
Probab=49.44 E-value=20 Score=33.74 Aligned_cols=62 Identities=15% Similarity=0.234 Sum_probs=41.3
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEE--EeCCHHHHHHHHHhcCCcc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV--TFREPEAAMKACVDAAPVI 88 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV--~F~~~e~A~~Ai~~~~~~i 88 (279)
..+|-|..+ .+++.|++|.++++ +..+++.+.+++|+. .|-.| .|.++++|++||+.|-..|
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkp-WYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKP-WYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCce-EEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 345554443 45888888888875 566666665544442 34443 6899999999999986544
No 162
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=49.19 E-value=20 Score=31.00 Aligned_cols=74 Identities=19% Similarity=0.183 Sum_probs=48.8
Q ss_pred CCccEEEECCCCccCcH-----HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCe-e
Q 023634 20 TTYTKVFVGGLAWETQK-----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR-R 92 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~te-----e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr-~ 92 (279)
+-.++|++.+|+.++-. ...+.+|.++-+.....+++. .+.--|.|.+.+.|.+|...+.. .+.++ .
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~ 81 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNE 81 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCce
Confidence 34467888888876432 233455655554444444433 34566789999999999988864 58887 7
Q ss_pred EEEEEcc
Q 023634 93 ANCNLAC 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
+++-++.
T Consensus 82 ~k~yfaQ 88 (193)
T KOG4019|consen 82 LKLYFAQ 88 (193)
T ss_pred EEEEEcc
Confidence 7777774
No 163
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=48.93 E-value=21 Score=32.95 Aligned_cols=32 Identities=22% Similarity=0.069 Sum_probs=23.6
Q ss_pred EEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 67 GFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 67 aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
|||+|++.++|..|++.... .+.++++++.|.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 79999999999999996532 223555777764
No 164
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.95 E-value=27 Score=35.33 Aligned_cols=80 Identities=15% Similarity=0.306 Sum_probs=57.3
Q ss_pred CCCccEEEECCCCcc-CcHHHHHHHHHhc----CCEEEEEEeecC----------CCCC---------------------
Q 023634 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVITDK----------ATGR--------------------- 62 (279)
Q Consensus 19 d~~~~~lfVgnLp~~-~tee~L~~~F~~f----G~I~~v~i~~dk----------~tg~--------------------- 62 (279)
+...++|-|.||.|+ +..++|.-+|+.| |.|.+|.|-... .+|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 566789999999997 7889999999887 689998874311 1111
Q ss_pred ---------------c-cceEEEEeCCHHHHHHHHHhcCCc-cC--CeeEEEEEc
Q 023634 63 ---------------S-KGYGFVTFREPEAAMKACVDAAPV-ID--GRRANCNLA 98 (279)
Q Consensus 63 ---------------s-kG~aFV~F~~~e~A~~Ai~~~~~~-i~--Gr~i~V~~a 98 (279)
- -=||.|+|.+.+.|.+..+.+.++ +. +.+|.+.+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 127999999999999998888653 33 344444444
No 165
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=47.74 E-value=66 Score=24.20 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=40.0
Q ss_pred EEECCCCccCcHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 25 VFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 25 lfVgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
-|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. + .-=|||++.+.++|.+....+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~-~--~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPK-G--EKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--cEEEEEEeCCCCcHHHHHHhh
Confidence 444456788999999999987 55 677776655442 2 224999999988887765543
No 166
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=45.77 E-value=30 Score=26.33 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=24.3
Q ss_pred EEEEeCCHHHHHHHHHhcCC--ccCCeeEEEEEc
Q 023634 67 GFVTFREPEAAMKACVDAAP--VIDGRRANCNLA 98 (279)
Q Consensus 67 aFV~F~~~e~A~~Ai~~~~~--~i~Gr~i~V~~a 98 (279)
|.|+|++.+-|++.|+.-.+ .+++..++|...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 68999999999998887643 377777666554
No 167
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=43.83 E-value=15 Score=33.03 Aligned_cols=37 Identities=14% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAV 53 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~ 53 (279)
..+.+.+.||+-|||..++++.|+++.++.|-+..+.
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 3456678999999999999999999999998665543
No 168
>PF15063 TC1: Thyroid cancer protein 1
Probab=43.71 E-value=12 Score=27.61 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=34.4
Q ss_pred chhhHHhhccCCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEE
Q 023634 4 PVSAQAAAAGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL 50 (279)
Q Consensus 4 P~~a~~~~~~~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~ 50 (279)
|.+.++.++.....-|...+|--+.||=.+++.++|..+|.+-|+.+
T Consensus 7 ~~S~~v~Ps~~g~~~dt~~RKkasaNIFe~vn~~qlqrLF~~sGD~k 53 (79)
T PF15063_consen 7 SASVRVSPSVHGYKFDTASRKKASANIFENVNLDQLQRLFQKSGDKK 53 (79)
T ss_pred CcceeccCCCCCCCcchHHhhhhhhhhhhccCHHHHHHHHHHccchh
Confidence 33434444444445556778888899999999999999999998753
No 169
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=40.32 E-value=13 Score=28.25 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=21.3
Q ss_pred CCCccEEEECCCCccCcHHHHHHHH
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYF 43 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F 43 (279)
....++|-|.|||...+||+|++.+
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeE
Confidence 4566899999999999999999754
No 170
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=40.20 E-value=2e+02 Score=23.27 Aligned_cols=69 Identities=10% Similarity=0.004 Sum_probs=46.3
Q ss_pred cEEEECCCCcc---CcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC-eeEEEEE
Q 023634 23 TKVFVGGLAWE---TQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCNL 97 (279)
Q Consensus 23 ~~lfVgnLp~~---~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~G-r~i~V~~ 97 (279)
-.|-|...... .+.+.+++.+++-| .++++..-.+ --.|.|++.|+-.+|.+.+...+.. -.|.+++
T Consensus 36 pavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~~~--------~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl 107 (127)
T PRK10629 36 STLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPEND--------SLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQD 107 (127)
T ss_pred ceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEeeCC--------EEEEEECCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 35666554322 56678888888776 5555554333 5789999999999998888766544 4555566
Q ss_pred cc
Q 023634 98 AC 99 (279)
Q Consensus 98 a~ 99 (279)
+.
T Consensus 108 ~p 109 (127)
T PRK10629 108 DN 109 (127)
T ss_pred CC
Confidence 53
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=39.28 E-value=77 Score=23.98 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=32.6
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~ 72 (279)
..-|||++++..+.|.-.+.+.+..++-..+-+-.+. + ..||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~-n--eqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN-N--EQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC-C--CCCEEEEEeC
Confidence 4579999999998877667666655544444333332 2 6899998874
No 172
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=38.36 E-value=23 Score=22.43 Aligned_cols=16 Identities=13% Similarity=0.435 Sum_probs=10.4
Q ss_pred ccCcHHHHHHHHHhcC
Q 023634 32 WETQKETMEKYFEQFG 47 (279)
Q Consensus 32 ~~~tee~L~~~F~~fG 47 (279)
.++++++||++|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4688999999998754
No 173
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=32.85 E-value=84 Score=25.35 Aligned_cols=46 Identities=20% Similarity=0.392 Sum_probs=28.2
Q ss_pred cCcHHHHHHHHHh-cCCEEEEEEeec----CCCCCccceEEEEeCCHHHHHH
Q 023634 33 ETQKETMEKYFEQ-FGEILEAVVITD----KATGRSKGYGFVTFREPEAAMK 79 (279)
Q Consensus 33 ~~tee~L~~~F~~-fG~I~~v~i~~d----k~tg~skG~aFV~F~~~e~A~~ 79 (279)
+++.+||++-+.+ |-.-.++.++.+ --+|++.|||.| |++.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5778888887765 332233333333 345788899987 666666544
No 174
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=31.78 E-value=1.6e+02 Score=19.68 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=39.8
Q ss_pred EEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCH----HHHHHHHHhc
Q 023634 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP----EAAMKACVDA 84 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~----e~A~~Ai~~~ 84 (279)
+|.|.||.-.--...+++.+.+.-.|.++.+-.. .+-.-|+|... +...++|+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~------~~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE------TKTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT------TTEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC------CCEEEEEEecCCCCHHHHHHHHHHh
Confidence 4667777666667889999999989999988554 24677888643 5666666654
No 175
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=31.51 E-value=20 Score=34.71 Aligned_cols=62 Identities=18% Similarity=0.140 Sum_probs=49.8
Q ss_pred CccEEEECCCCccCcHH--------HHHHHHHh--cCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHH
Q 023634 21 TYTKVFVGGLAWETQKE--------TMEKYFEQ--FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACV 82 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee--------~L~~~F~~--fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~ 82 (279)
..+.+|+.++..+...+ +|...|.. ++.+..+...+|..+..++|--|++|...+.+++.+.
T Consensus 173 ~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 173 MQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred HhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34677887777665544 89999988 6777778877777677889999999999999999985
No 176
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=30.07 E-value=1.1e+02 Score=23.76 Aligned_cols=50 Identities=18% Similarity=0.244 Sum_probs=30.9
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCH
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREP 74 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~ 74 (279)
..-|||++++..+.|.--+.+-+.+++-.-+-+-.+ + ...||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~--~-~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT--N-TESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC--C-CCCCcEEEecCCC
Confidence 457999999988876555555555544323323333 2 2349999988653
No 177
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=30.05 E-value=1.3e+02 Score=24.58 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=8.5
Q ss_pred HHHHHHHHhcCCccCCeeEE
Q 023634 75 EAAMKACVDAAPVIDGRRAN 94 (279)
Q Consensus 75 e~A~~Ai~~~~~~i~Gr~i~ 94 (279)
++.+.|..++. .+++..|.
T Consensus 84 ~~~e~A~~Al~-~lng~~i~ 102 (144)
T PLN03134 84 NDEGAATAAIS-EMDGKELN 102 (144)
T ss_pred CCHHHHHHHHH-HcCCCEEC
Confidence 44444444442 24555443
No 178
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=29.09 E-value=2.4e+02 Score=21.16 Aligned_cols=45 Identities=18% Similarity=0.153 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 36 KETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 36 ee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
++.++++++++| +++++.+.. |+.--...+++.|.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 466888888876 788887765 334557788999999888776554
No 179
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=28.36 E-value=83 Score=30.73 Aligned_cols=43 Identities=16% Similarity=0.337 Sum_probs=33.6
Q ss_pred CCCCCCCCccEEEECCCCcc-CcHHHHHHHHHhc----CCEEEEEEee
Q 023634 14 AGQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQF----GEILEAVVIT 56 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~-~tee~L~~~F~~f----G~I~~v~i~~ 56 (279)
..+.+....++|-|-||.|+ +...+|..+|+.| |.|..|.|..
T Consensus 138 ~~pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 138 AVPEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CccCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 34555667789999999997 7788999999877 6788777643
No 180
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=27.47 E-value=1.5e+02 Score=23.06 Aligned_cols=46 Identities=30% Similarity=0.442 Sum_probs=25.5
Q ss_pred cCcHHHHHHHHH-hcCCEEEEEEeecCCC----CCccceEEEEeCCHHHHHH
Q 023634 33 ETQKETMEKYFE-QFGEILEAVVITDKAT----GRSKGYGFVTFREPEAAMK 79 (279)
Q Consensus 33 ~~tee~L~~~F~-~fG~I~~v~i~~dk~t----g~skG~aFV~F~~~e~A~~ 79 (279)
..+..+|++-+. .++.=.+..++..-.| +++.|||.| |++.+.+++
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 567778876664 4664334444443333 456666665 566655544
No 181
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=26.46 E-value=2.6e+02 Score=20.35 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=34.8
Q ss_pred EEEECCCCccCcHHHHHHHH-------HhcCCEEEEEEeecCCCCC-ccce--E-EEEeCCHHHHHHHH
Q 023634 24 KVFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGR-SKGY--G-FVTFREPEAAMKAC 81 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F-------~~fG~I~~v~i~~dk~tg~-skG~--a-FV~F~~~e~A~~Ai 81 (279)
.|.+-.|..++++++++++. .+...|+++.+-++..... .++| + +++|+|.++-+.-.
T Consensus 3 Hivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~~~~~~~~~~~~~~~~~F~s~~~l~~Y~ 71 (97)
T PF07876_consen 3 HIVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNFSPEDLAKGYDHALVSTFESEEDLDAYQ 71 (97)
T ss_dssp EEEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEESSTSSTSTT-SEEEEEEESSHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEcccCcccccCCCcEEEEEEECCHHHHHHHH
Confidence 34444577778877765443 3556788888777653332 3443 3 45888888765533
No 182
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=25.92 E-value=75 Score=24.13 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=28.1
Q ss_pred ccEEEECCCCccCcHHHHHHHHHh-cCCEEEEEEeecCCCCCccceEEEEeCC
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFRE 73 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~-fG~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (279)
..-|||++++..+.|.--+.+-+. .++- .+.++.. +....||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G-~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKG-SLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCc-cEEEEEe--CCCCCCcEEEecCC
Confidence 457999999988866544444444 2322 2222222 12346899988765
No 183
>PRK10905 cell division protein DamX; Validated
Probab=25.41 E-value=68 Score=30.20 Aligned_cols=62 Identities=13% Similarity=0.206 Sum_probs=39.2
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEE--EeCCHHHHHHHHHhcCCccC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV--TFREPEAAMKACVDAAPVID 89 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV--~F~~~e~A~~Ai~~~~~~i~ 89 (279)
.+|-|+-+ .+++.|+++-.+.+ +....+.....+|+. .|-.+ .|.++++|++||+.|-..|.
T Consensus 248 YTLQL~A~---Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~vQ 311 (328)
T PRK10905 248 YTLQLSSS---SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADVQ 311 (328)
T ss_pred eEEEEEec---CCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHHH
Confidence 44554444 45788888888874 454444444433432 23333 68999999999999865543
No 184
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=25.06 E-value=1e+02 Score=22.77 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.5
Q ss_pred ccceEEEEeCCHHHHHHHHHhcCCc
Q 023634 63 SKGYGFVTFREPEAAMKACVDAAPV 87 (279)
Q Consensus 63 skG~aFV~F~~~e~A~~Ai~~~~~~ 87 (279)
.|||-||+=.+.+++.+||+.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 5899999999999999999987653
No 185
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=24.92 E-value=2.6e+02 Score=24.38 Aligned_cols=46 Identities=28% Similarity=0.383 Sum_probs=30.9
Q ss_pred cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 35 tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
+.++.+++.+++..-. ++|..| +...|=+-+...+.++|.++++.+
T Consensus 25 ~~~~A~~~l~~~~~p~-~ViKad---Gla~GKGV~i~~~~~eA~~~l~~~ 70 (194)
T PF01071_consen 25 DYEEALEYLEEQGYPY-VVIKAD---GLAAGKGVVIADDREEALEALREI 70 (194)
T ss_dssp SHHHHHHHHHHHSSSE-EEEEES---SSCTTTSEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCc-eEEccC---CCCCCCEEEEeCCHHHHHHHHHHh
Confidence 5677788887776433 444444 333334556669999999999976
No 186
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=24.48 E-value=1.2e+02 Score=23.18 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=27.7
Q ss_pred EEEECCCCccCcHHHH---HHHHHhcCCEEEEEE--eecCCCCCccceEEEEeC
Q 023634 24 KVFVGGLAWETQKETM---EKYFEQFGEILEAVV--ITDKATGRSKGYGFVTFR 72 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L---~~~F~~fG~I~~v~i--~~dk~tg~skG~aFV~F~ 72 (279)
..|+.+||.++-+.++ ++.|.++..-..|.+ ..........|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 3588899999888765 455545543333332 123445667777765543
No 187
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=23.40 E-value=2.7e+02 Score=19.55 Aligned_cols=43 Identities=16% Similarity=0.203 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCEEEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHHhcC
Q 023634 37 ETMEKYFEQFGEILEAVVITDKATGR-SKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~tg~-skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
++|++.+++.| +...++. |- .-++.|+.+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-----GsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-----GSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-----TTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-----CCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677778888 4444442 21 14578888889999888887763
No 188
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=23.34 E-value=5.7e+02 Score=24.75 Aligned_cols=11 Identities=18% Similarity=-0.061 Sum_probs=4.9
Q ss_pred ccEEEECCCCc
Q 023634 22 YTKVFVGGLAW 32 (279)
Q Consensus 22 ~~~lfVgnLp~ 32 (279)
.+.|+.-++|.
T Consensus 314 v~~VI~~~~P~ 324 (456)
T PRK10590 314 LPHVVNYELPN 324 (456)
T ss_pred CCEEEEeCCCC
Confidence 34444444544
No 189
>PF14893 PNMA: PNMA
Probab=23.30 E-value=30 Score=32.74 Aligned_cols=26 Identities=12% Similarity=0.253 Sum_probs=22.0
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHh
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQ 45 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~ 45 (279)
+..+.|.|.+||.++++++|++.+..
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHH
Confidence 45688999999999999999888753
No 190
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.24 E-value=2.2e+02 Score=23.81 Aligned_cols=46 Identities=20% Similarity=0.192 Sum_probs=36.9
Q ss_pred CCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 30 LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 30 Lp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
|+..+.++.|.++.+-.|-|.+.+ -.| -.+.|.|.+.+.+|++.+.
T Consensus 119 L~epl~~eRlqDi~E~hgvIiE~~-E~D---------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 119 LREPLAEERLQDIAETHGVIIEFE-EYD---------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred cCchhHHHHHHHHHHhhheeEEee-ecc---------EEEEeccHHHHHHHHHHHH
Confidence 677788899999999999887765 333 3467899999999998764
No 191
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.21 E-value=3.6e+02 Score=22.72 Aligned_cols=55 Identities=13% Similarity=0.162 Sum_probs=40.1
Q ss_pred cEEEECCCCccCcHHHHHHHHHhc---CCEEEEEEeecCCC---------CCccc-eEEEEeCCHHHH
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQF---GEILEAVVITDKAT---------GRSKG-YGFVTFREPEAA 77 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~f---G~I~~v~i~~dk~t---------g~skG-~aFV~F~~~e~A 77 (279)
.+|++.-+...++|++.++..++= .++.+|.+-+.+++ ...|. |-+|.|++-+..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 689999999999999999988764 57777776554422 12234 888999876543
No 192
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=22.44 E-value=1.4e+02 Score=22.33 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=21.2
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023634 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (279)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (279)
+|.+|+|.+-...++-|++|=|+|.+
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766668999999999987
No 193
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=22.17 E-value=1.6e+02 Score=24.48 Aligned_cols=63 Identities=14% Similarity=0.201 Sum_probs=39.5
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHH
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKA 80 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~A 80 (279)
.+.-..+||.|.-+..--++--+++|+.|- .|.++.+.++...-+-+....+...+..+.++.
T Consensus 83 ~~~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 83 SERFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred CceEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 344456788887755444555689999986 677887777653234445556655555444443
No 194
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=21.27 E-value=1.4e+02 Score=23.72 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=18.2
Q ss_pred CccCcHHHHHHHHHhcCCEEEEEE
Q 023634 31 AWETQKETMEKYFEQFGEILEAVV 54 (279)
Q Consensus 31 p~~~tee~L~~~F~~fG~I~~v~i 54 (279)
...+++++|++.|.+|-.=.++.|
T Consensus 42 ~~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 42 DSKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred eccCCHHHHHHHHHhhccccCeEE
Confidence 457899999999999965444443
No 195
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.81 E-value=2.5e+02 Score=20.68 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=39.9
Q ss_pred EEEECCCCccCcHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 24 KVFVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
+-|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. + .-=|||++.+.+.|.+.-..+
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~-~--~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR-G--EKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC-C--ceEEEEEECCCCcHHHHHHhh
Confidence 3455567889999999999987 55 666666555431 2 124999998888877755443
No 196
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=20.24 E-value=1e+02 Score=22.04 Aligned_cols=33 Identities=27% Similarity=0.439 Sum_probs=24.6
Q ss_pred cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEE
Q 023634 35 QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFV 69 (279)
Q Consensus 35 tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV 69 (279)
-|.+|+++|-+--+|+++.|...|.- .+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 45678888888889999999877643 3566666
Done!