Query 023634
Match_columns 279
No_of_seqs 341 out of 1854
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:11:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023634.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023634hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h2v_Z 20 kDa nuclear CAP bind 99.9 4.5E-22 1.5E-26 164.8 12.5 82 20-101 37-119 (156)
2 2cqd_A RNA-binding region cont 99.9 2.4E-21 8.3E-26 152.5 14.3 88 14-101 9-96 (116)
3 4fxv_A ELAV-like protein 1; RN 99.9 8.6E-22 3E-26 151.9 10.9 80 21-100 18-98 (99)
4 3s8s_A Histone-lysine N-methyl 99.9 1.4E-21 4.8E-26 153.7 8.8 83 19-101 3-86 (110)
5 1u6f_A Tcubp1, RNA-binding pro 99.8 7.9E-21 2.7E-25 154.0 13.3 85 17-101 37-122 (139)
6 2cpz_A CUG triplet repeat RNA- 99.8 4.8E-21 1.6E-25 150.6 10.6 88 15-102 18-106 (115)
7 2dgs_A DAZ-associated protein 99.8 1.5E-20 5.3E-25 143.7 13.1 85 16-101 4-89 (99)
8 1whw_A Hypothetical protein ri 99.8 1.7E-20 5.9E-25 143.3 13.2 84 18-101 4-88 (99)
9 2fy1_A RNA-binding motif prote 99.8 1.7E-20 6E-25 148.4 13.4 83 18-101 3-86 (116)
10 2dgo_A Cytotoxic granule-assoc 99.8 3.7E-20 1.3E-24 145.3 14.9 89 15-103 8-97 (115)
11 2lkz_A RNA-binding protein 5; 99.8 2E-21 6.8E-26 149.2 7.1 84 17-100 4-94 (95)
12 3s7r_A Heterogeneous nuclear r 99.8 1.1E-20 3.7E-25 141.1 10.3 83 16-98 5-87 (87)
13 1x5u_A Splicing factor 3B subu 99.8 2.6E-20 9E-25 143.8 12.6 87 15-101 8-95 (105)
14 2dnz_A Probable RNA-binding pr 99.8 2.7E-20 9.2E-25 141.0 12.5 81 20-100 3-84 (95)
15 2cq0_A Eukaryotic translation 99.8 1.7E-20 5.9E-25 144.4 11.5 86 16-101 9-95 (103)
16 1x4h_A RNA-binding protein 28; 99.8 2.3E-20 7.8E-25 145.3 12.3 87 16-102 9-102 (111)
17 2dnm_A SRP46 splicing factor; 99.8 1.3E-20 4.4E-25 145.1 10.7 86 16-101 7-93 (103)
18 2dgp_A Bruno-like 4, RNA bindi 99.8 1.5E-20 5.3E-25 145.3 11.2 87 15-101 6-96 (106)
19 1x5s_A Cold-inducible RNA-bind 99.8 2E-20 7E-25 143.6 11.8 85 17-101 7-92 (102)
20 2lxi_A RNA-binding protein 10; 99.8 3.7E-21 1.3E-25 145.9 7.5 79 23-101 2-83 (91)
21 2cqb_A Peptidyl-prolyl CIS-tra 99.8 1.2E-20 4.2E-25 144.9 10.3 85 17-101 7-92 (102)
22 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-20 4.3E-25 147.5 10.3 87 17-103 20-106 (109)
23 3ex7_B RNA-binding protein 8A; 99.8 1.8E-20 6.3E-25 149.4 11.1 89 14-102 14-103 (126)
24 2khc_A Testis-specific RNP-typ 99.8 6.6E-21 2.3E-25 150.3 8.4 85 15-99 33-118 (118)
25 2cph_A RNA binding motif prote 99.8 3.6E-20 1.2E-24 143.3 12.1 87 15-101 8-97 (107)
26 1x5t_A Splicing factor 3B subu 99.8 2.4E-20 8.1E-25 141.6 10.8 82 20-101 3-86 (96)
27 2cqg_A TDP-43, TAR DNA-binding 99.8 4.3E-20 1.5E-24 142.2 12.0 86 15-101 8-93 (103)
28 2dhg_A TRNA selenocysteine ass 99.8 3.7E-20 1.3E-24 142.7 11.2 87 17-104 4-93 (104)
29 2dng_A Eukaryotic translation 99.8 6.4E-20 2.2E-24 141.4 12.3 85 15-101 8-93 (103)
30 2d9p_A Polyadenylate-binding p 99.8 4.8E-20 1.6E-24 141.9 11.4 87 14-102 7-94 (103)
31 1wi8_A EIF-4B, eukaryotic tran 99.8 5.8E-20 2E-24 141.8 11.9 85 15-101 8-94 (104)
32 2dh8_A DAZ-associated protein 99.8 2.2E-20 7.7E-25 144.3 9.5 87 15-101 9-95 (105)
33 2cqc_A Arginine/serine-rich sp 99.8 5.2E-20 1.8E-24 139.3 11.2 86 15-100 8-94 (95)
34 2cpf_A RNA binding motif prote 99.8 4.4E-20 1.5E-24 140.8 10.7 82 20-101 3-88 (98)
35 3bs9_A Nucleolysin TIA-1 isofo 99.8 4.8E-20 1.6E-24 137.2 10.5 81 20-100 4-85 (87)
36 2e5h_A Zinc finger CCHC-type a 99.8 5.2E-20 1.8E-24 139.1 10.9 84 16-99 10-94 (94)
37 2cqi_A Nucleolysin TIAR; RNA r 99.8 1.5E-19 5E-24 139.2 13.5 86 15-102 8-94 (103)
38 3mdf_A Peptidyl-prolyl CIS-tra 99.8 4.6E-20 1.6E-24 136.7 10.2 81 19-99 4-85 (85)
39 3q2s_C Cleavage and polyadenyl 99.8 1.5E-20 5.2E-25 165.9 8.9 80 21-100 67-149 (229)
40 1p27_B RNA-binding protein 8A; 99.8 7.1E-20 2.4E-24 141.6 11.3 87 15-101 16-103 (106)
41 2dnh_A Bruno-like 5, RNA bindi 99.8 8.8E-20 3E-24 140.8 11.8 84 18-102 11-98 (105)
42 2cpe_A RNA-binding protein EWS 99.8 5.9E-20 2E-24 143.7 10.7 86 16-101 9-103 (113)
43 3md1_A Nuclear and cytoplasmic 99.8 8.8E-20 3E-24 134.6 10.9 78 23-100 2-80 (83)
44 2do4_A Squamous cell carcinoma 99.8 1.1E-19 3.9E-24 139.1 11.7 84 17-101 12-96 (100)
45 2do0_A HnRNP M, heterogeneous 99.8 2.8E-19 9.7E-24 139.9 14.2 84 17-101 10-94 (114)
46 3p5t_L Cleavage and polyadenyl 99.8 1.1E-20 3.7E-25 142.6 5.7 79 23-101 2-83 (90)
47 1x4b_A Heterogeneous nuclear r 99.8 2.8E-20 9.6E-25 146.4 8.2 84 18-101 23-106 (116)
48 1oo0_B CG8781-PA, drosophila Y 99.8 9.9E-20 3.4E-24 141.8 11.2 89 14-102 18-107 (110)
49 2m2b_A RNA-binding protein 10; 99.8 1.7E-20 5.7E-25 151.3 7.0 88 13-101 14-108 (131)
50 2div_A TRNA selenocysteine ass 99.8 1.1E-19 3.7E-24 138.8 11.0 83 18-100 5-93 (99)
51 2cq3_A RNA-binding protein 9; 99.8 2.7E-19 9.4E-24 137.7 13.3 86 15-102 8-94 (103)
52 4f25_A Polyadenylate-binding p 99.8 7.3E-20 2.5E-24 144.4 10.2 80 21-102 4-84 (115)
53 2ywk_A Putative RNA-binding pr 99.8 8.6E-20 3E-24 138.2 10.1 84 15-99 9-93 (95)
54 3ns6_A Eukaryotic translation 99.8 3.8E-20 1.3E-24 142.5 7.9 83 19-101 3-93 (100)
55 2cq4_A RNA binding motif prote 99.8 1.4E-20 5E-25 147.6 5.2 85 18-103 21-106 (114)
56 2jrs_A RNA-binding protein 39; 99.8 1.2E-19 4.2E-24 141.8 10.4 88 14-101 18-106 (108)
57 2la6_A RNA-binding protein FUS 99.8 1.4E-19 4.8E-24 138.5 10.4 84 16-99 7-99 (99)
58 2x1f_A MRNA 3'-END-processing 99.8 1.8E-19 6.3E-24 137.1 10.7 80 22-101 2-82 (96)
59 1uaw_A Mouse-musashi-1; RNP-ty 99.8 3.5E-20 1.2E-24 134.9 6.2 76 23-98 1-76 (77)
60 2dis_A Unnamed protein product 99.8 3.2E-19 1.1E-23 138.5 11.8 84 20-103 6-94 (109)
61 2kxn_B Transformer-2 protein h 99.8 9.8E-20 3.4E-24 147.0 9.1 85 16-100 40-125 (129)
62 3ucg_A Polyadenylate-binding p 99.8 1.1E-19 3.9E-24 135.7 8.8 80 20-100 4-84 (89)
63 1x4a_A Splicing factor, argini 99.8 3.3E-19 1.1E-23 138.7 11.5 83 15-100 15-98 (109)
64 1p1t_A Cleavage stimulation fa 99.8 7.1E-20 2.4E-24 140.9 7.5 87 16-102 2-89 (104)
65 4a8x_A RNA-binding protein wit 99.8 2E-19 6.8E-24 134.0 9.6 80 21-100 3-84 (88)
66 2cqp_A RNA-binding protein 12; 99.8 1.1E-19 3.6E-24 138.6 8.3 83 17-99 10-93 (98)
67 2dgx_A KIAA0430 protein; RRM d 99.8 5E-19 1.7E-23 135.0 11.7 79 20-101 7-90 (96)
68 3n9u_C Cleavage and polyadenyl 99.8 2.7E-19 9.1E-24 149.1 11.0 80 21-100 54-136 (156)
69 1sjq_A Polypyrimidine tract-bi 99.8 2.2E-19 7.6E-24 140.4 9.7 78 18-101 12-92 (105)
70 2kn4_A Immunoglobulin G-bindin 99.8 5.1E-19 1.7E-23 146.2 12.3 84 18-101 66-150 (158)
71 2ek1_A RNA-binding protein 12; 99.8 6.3E-20 2.1E-24 139.0 6.3 83 17-99 10-93 (95)
72 2dgv_A HnRNP M, heterogeneous 99.8 4.8E-19 1.6E-23 133.3 11.1 82 17-100 3-85 (92)
73 1s79_A Lupus LA protein; RRM, 99.8 2.1E-19 7.3E-24 139.6 9.3 82 18-100 7-88 (103)
74 3ulh_A THO complex subunit 4; 99.8 4.8E-19 1.7E-23 137.0 11.1 83 16-99 23-106 (107)
75 1wg5_A Heterogeneous nuclear r 99.8 5.2E-19 1.8E-23 137.0 10.9 82 17-99 10-92 (104)
76 2jwn_A Embryonic polyadenylate 99.8 5.1E-19 1.7E-23 140.6 10.9 79 21-100 35-114 (124)
77 1wez_A HnRNP H', FTP-3, hetero 99.8 2.7E-19 9.2E-24 138.6 9.0 81 17-99 10-90 (102)
78 2lea_A Serine/arginine-rich sp 99.8 1.7E-19 5.7E-24 146.6 8.2 86 16-101 41-127 (135)
79 2dgu_A Heterogeneous nuclear r 99.8 1.6E-18 5.6E-23 133.5 13.3 81 17-105 6-87 (103)
80 2cpy_A RNA-binding protein 12; 99.8 6.3E-20 2.1E-24 144.5 5.3 83 18-101 11-94 (114)
81 2dgw_A Probable RNA-binding pr 99.8 8.5E-19 2.9E-23 131.9 11.2 82 17-101 5-87 (91)
82 1iqt_A AUF1, heterogeneous nuc 99.8 1.1E-19 3.8E-24 131.7 5.9 75 24-98 1-75 (75)
83 1x4c_A Splicing factor, argini 99.8 2.2E-18 7.5E-23 134.2 13.4 77 17-100 10-92 (108)
84 2mss_A Protein (musashi1); RNA 99.8 1.7E-19 5.7E-24 130.9 6.5 75 24-98 1-75 (75)
85 1x4e_A RNA binding motif, sing 99.8 8.3E-20 2.8E-24 135.7 4.9 79 20-98 3-82 (85)
86 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-19 6.3E-24 138.4 6.9 84 16-101 13-98 (100)
87 2kt5_A RNA and export factor-b 99.8 1.5E-18 5.1E-23 138.2 12.3 83 18-101 31-114 (124)
88 1rk8_A CG8781-PA, CG8781-PA pr 99.8 8.6E-19 3E-23 146.6 11.4 89 15-103 65-154 (165)
89 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9.4E-19 3.2E-23 141.2 10.9 82 17-98 58-140 (140)
90 2cq1_A PTB-like protein L; RRM 99.8 1.1E-18 3.8E-23 135.3 10.7 83 13-101 6-91 (101)
91 1x4d_A Matrin 3; structural ge 99.8 8.6E-19 3E-23 136.3 9.9 78 18-101 11-92 (102)
92 2fc9_A NCL protein; structure 99.8 1.4E-18 4.6E-23 133.3 10.7 82 16-101 9-91 (101)
93 2dnq_A RNA-binding protein 4B; 99.8 2.7E-18 9.4E-23 129.0 11.7 75 18-100 4-79 (90)
94 1wex_A Hypothetical protein (r 99.8 1.7E-18 5.9E-23 134.9 10.7 81 15-101 8-91 (104)
95 2err_A Ataxin-2-binding protei 99.8 9.3E-19 3.2E-23 136.8 9.1 83 16-100 23-106 (109)
96 2fc8_A NCL protein; structure 99.8 1.4E-18 4.7E-23 133.4 9.9 81 17-100 10-91 (102)
97 3pgw_S U1-70K; protein-RNA com 99.8 3.8E-18 1.3E-22 163.8 15.2 83 20-102 100-183 (437)
98 2ki2_A SS-DNA binding protein 99.8 1.8E-19 6.2E-24 135.2 4.6 78 23-101 2-80 (90)
99 2cpi_A CCR4-NOT transcription 99.8 1.2E-18 4.1E-23 136.5 9.4 84 18-101 11-101 (111)
100 2hgn_A Heterogeneous nuclear r 99.8 1.7E-19 5.7E-24 147.9 4.2 80 18-100 42-122 (139)
101 2hgm_A HNRPF protein, heteroge 99.8 6.3E-19 2.2E-23 142.1 7.5 81 17-99 37-119 (126)
102 2cpx_A Hypothetical protein FL 99.8 4.1E-19 1.4E-23 139.2 6.2 84 18-101 21-105 (115)
103 2lcw_A RNA-binding protein FUS 99.6 3.5E-20 1.2E-24 146.0 0.0 83 18-100 3-94 (116)
104 1x4g_A Nucleolysin TIAR; struc 99.8 4.2E-18 1.4E-22 132.5 11.5 79 18-102 21-100 (109)
105 2ad9_A Polypyrimidine tract-bi 99.8 3.1E-18 1.1E-22 136.8 11.0 80 17-102 26-108 (119)
106 2xs2_A Deleted in azoospermia- 99.8 7.2E-19 2.4E-23 135.1 6.9 84 17-102 4-87 (102)
107 2jvo_A Nucleolar protein 3; nu 99.8 2.1E-18 7.3E-23 134.8 9.4 82 12-101 21-103 (108)
108 2ytc_A PRE-mRNA-splicing facto 99.8 3.9E-18 1.3E-22 126.4 10.4 79 15-99 5-85 (85)
109 1x4f_A Matrin 3; structural ge 99.8 9.5E-19 3.3E-23 138.3 7.4 92 3-100 6-101 (112)
110 2hvz_A Splicing factor, argini 99.8 5.2E-18 1.8E-22 130.0 11.1 75 23-102 1-76 (101)
111 2dgt_A RNA-binding protein 30; 99.8 8.5E-18 2.9E-22 126.8 12.1 78 16-101 4-82 (92)
112 2dnn_A RNA-binding protein 12; 99.8 1.5E-18 5.3E-23 136.3 8.1 81 18-100 12-92 (109)
113 1x5o_A RNA binding motif, sing 99.8 3.2E-18 1.1E-22 134.0 10.0 82 17-99 20-110 (114)
114 2db1_A Heterogeneous nuclear r 99.8 1.4E-18 4.6E-23 137.9 7.5 81 18-100 13-97 (118)
115 2nlw_A Eukaryotic translation 99.7 3.9E-18 1.3E-22 132.2 9.8 82 17-100 10-99 (105)
116 1fj7_A Nucleolin RBD1, protein 99.7 3.5E-19 1.2E-23 136.6 3.6 80 19-100 14-94 (101)
117 2hgl_A HNRPF protein, heteroge 99.7 1.5E-18 5.2E-23 141.6 7.5 81 18-100 40-124 (136)
118 2cqh_A IGF-II mRNA-binding pro 99.7 3.6E-18 1.2E-22 129.0 8.8 77 18-101 4-83 (93)
119 1wel_A RNA-binding protein 12; 99.7 8.2E-19 2.8E-23 139.9 5.5 82 18-100 21-103 (124)
120 3r27_A HnRNP L, heterogeneous 99.7 5.5E-18 1.9E-22 131.3 9.9 78 17-100 16-96 (100)
121 2dnp_A RNA-binding protein 14; 99.7 1.1E-17 3.8E-22 125.6 11.2 77 17-101 4-81 (90)
122 1l3k_A Heterogeneous nuclear r 99.7 5.7E-18 1.9E-22 143.0 10.5 85 20-104 102-186 (196)
123 2la4_A Nuclear and cytoplasmic 99.7 2.4E-18 8.2E-23 131.9 7.4 77 18-100 23-100 (101)
124 2cpj_A Non-POU domain-containi 99.7 8.3E-18 2.8E-22 128.5 10.1 78 17-100 10-88 (99)
125 3beg_B Splicing factor, argini 99.7 1.4E-18 4.7E-23 137.1 5.9 74 19-99 13-92 (115)
126 1why_A Hypothetical protein ri 99.7 1E-17 3.6E-22 127.5 10.5 77 18-100 13-92 (97)
127 2jvr_A Nucleolar protein 3; RN 99.7 4.9E-18 1.7E-22 133.9 8.9 76 20-99 26-103 (111)
128 2a3j_A U1 small nuclear ribonu 99.7 1.1E-17 3.6E-22 135.0 10.9 82 17-101 24-110 (127)
129 2e5g_A U6 snRNA-specific termi 99.7 1.2E-17 4.1E-22 126.6 10.7 77 19-101 5-82 (94)
130 1l3k_A Heterogeneous nuclear r 99.7 9.1E-18 3.1E-22 141.8 11.1 86 16-101 7-92 (196)
131 2cpd_A Apobec-1 stimulating pr 99.7 2.5E-17 8.5E-22 125.9 12.1 77 17-101 10-89 (99)
132 1wf1_A RNA-binding protein RAL 99.7 8.7E-18 3E-22 131.0 9.6 74 19-100 24-99 (110)
133 2e5j_A Methenyltetrahydrofolat 99.7 1E-17 3.5E-22 127.7 9.7 79 18-101 15-94 (97)
134 2krb_A Eukaryotic translation 99.7 3.1E-18 1E-22 126.4 6.5 72 22-95 1-80 (81)
135 2dha_A FLJ20171 protein; RRM d 99.7 2.6E-18 8.9E-23 137.9 6.6 80 19-99 20-103 (123)
136 2lmi_A GRSF-1, G-rich sequence 99.7 1.9E-18 6.6E-23 134.4 5.6 82 17-100 6-91 (107)
137 4f02_A Polyadenylate-binding p 99.7 1.1E-17 3.9E-22 144.8 11.0 81 20-100 13-94 (213)
138 2wbr_A GW182, gawky, LD47780P; 99.7 1.1E-17 3.8E-22 126.3 8.9 73 21-99 6-79 (89)
139 2kvi_A Nuclear polyadenylated 99.7 8.8E-18 3E-22 127.9 8.4 76 18-101 6-83 (96)
140 2dnl_A Cytoplasmic polyadenyla 99.7 6.8E-18 2.3E-22 132.7 7.5 80 18-99 4-86 (114)
141 1x5p_A Negative elongation fac 99.7 7E-17 2.4E-21 123.0 12.5 77 17-101 10-87 (97)
142 2f3j_A RNA and export factor b 99.7 2.1E-17 7.2E-22 140.3 10.4 82 19-101 85-167 (177)
143 2xnq_A Nuclear polyadenylated 99.7 3.8E-17 1.3E-21 125.0 10.8 76 17-100 17-94 (97)
144 1fjc_A Nucleolin RBD2, protein 99.7 1.1E-17 3.8E-22 126.8 7.6 79 17-100 11-90 (96)
145 1nu4_A U1A RNA binding domain; 99.7 1.2E-17 4E-22 126.8 7.5 81 18-101 4-89 (97)
146 3lqv_A PRE-mRNA branch site pr 99.7 3.3E-17 1.1E-21 128.4 9.6 80 19-101 5-85 (115)
147 1whx_A Hypothetical protein ri 99.7 2.9E-17 1E-21 128.8 9.1 78 19-102 7-85 (111)
148 1sjr_A Polypyrimidine tract-bi 99.7 9.9E-17 3.4E-21 134.6 12.8 81 17-101 41-124 (164)
149 1wf0_A TDP-43, TAR DNA-binding 99.7 1E-17 3.6E-22 125.3 6.1 76 20-101 3-78 (88)
150 1b7f_A Protein (SXL-lethal pro 99.7 5.3E-17 1.8E-21 133.6 10.9 81 21-101 2-83 (168)
151 1fxl_A Paraneoplastic encephal 99.7 6E-17 2.1E-21 132.7 11.2 79 22-100 2-81 (167)
152 2i2y_A Fusion protein consists 99.7 3.9E-17 1.3E-21 134.0 9.9 79 17-100 68-147 (150)
153 3d2w_A TAR DNA-binding protein 99.7 2.5E-17 8.6E-22 124.3 8.0 78 18-101 7-84 (89)
154 3md3_A Nuclear and cytoplasmic 99.7 8.9E-17 3E-21 131.6 11.6 82 18-99 83-165 (166)
155 2qfj_A FBP-interacting repress 99.7 7.3E-17 2.5E-21 138.2 11.5 82 20-101 123-205 (216)
156 3egn_A RNA-binding protein 40; 99.7 1.2E-17 4.1E-22 136.1 5.5 87 18-104 41-133 (143)
157 2e44_A Insulin-like growth fac 99.7 6.7E-17 2.3E-21 122.5 9.2 79 19-101 12-92 (96)
158 1wg1_A KIAA1579 protein, homol 99.7 4.8E-17 1.6E-21 121.9 7.9 74 20-100 3-77 (88)
159 2j8a_A Histone-lysine N-methyl 99.7 4E-17 1.4E-21 131.6 7.7 77 23-99 3-94 (136)
160 2yh0_A Splicing factor U2AF 65 99.7 1.3E-16 4.3E-21 134.9 10.9 83 19-101 111-194 (198)
161 2g4b_A Splicing factor U2AF 65 99.7 1.6E-16 5.6E-21 131.3 10.4 79 20-98 92-171 (172)
162 2cjk_A Nuclear polyadenylated 99.7 9.3E-17 3.2E-21 132.2 8.4 79 21-100 2-80 (167)
163 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-16 6.2E-21 136.2 10.4 81 21-102 108-188 (193)
164 2cq2_A Hypothetical protein LO 99.7 2.5E-16 8.4E-21 124.8 10.2 77 18-100 21-105 (114)
165 2cjk_A Nuclear polyadenylated 99.7 7.8E-17 2.7E-21 132.6 7.1 79 21-100 86-165 (167)
166 2qfj_A FBP-interacting repress 99.7 1.9E-16 6.6E-21 135.5 9.6 81 20-100 26-107 (216)
167 4f02_A Polyadenylate-binding p 99.7 1.4E-16 4.8E-21 137.9 8.3 79 21-101 102-181 (213)
168 3md3_A Nuclear and cytoplasmic 99.7 3.9E-16 1.3E-20 127.7 10.1 77 23-100 1-78 (166)
169 3zzy_A Polypyrimidine tract-bi 99.6 9.4E-16 3.2E-20 124.1 11.7 80 17-101 23-106 (130)
170 2hzc_A Splicing factor U2AF 65 99.6 5E-16 1.7E-20 115.3 9.2 72 19-97 3-86 (87)
171 1b7f_A Protein (SXL-lethal pro 99.6 7.5E-16 2.6E-20 126.6 11.0 80 19-98 86-168 (168)
172 3nmr_A Cugbp ELAV-like family 99.6 6.8E-16 2.3E-20 127.5 10.3 80 21-100 2-87 (175)
173 2bz2_A Negative elongation fac 99.6 5.7E-16 2E-20 123.5 8.8 76 18-101 35-111 (121)
174 1fxl_A Paraneoplastic encephal 99.6 1.1E-15 3.9E-20 125.0 10.5 80 19-98 85-167 (167)
175 2e5i_A Heterogeneous nuclear r 99.6 2.6E-15 8.8E-20 120.6 12.2 77 19-101 22-102 (124)
176 3nmr_A Cugbp ELAV-like family 99.6 1.3E-15 4.5E-20 125.8 10.2 79 19-98 92-174 (175)
177 3tyt_A Heterogeneous nuclear r 99.6 1.3E-15 4.5E-20 131.8 10.6 76 21-101 3-80 (205)
178 3pgw_A U1-A; protein-RNA compl 99.6 1.7E-15 5.8E-20 135.6 11.4 82 18-102 5-91 (282)
179 2diu_A KIAA0430 protein; struc 99.6 4.5E-15 1.6E-19 113.3 10.6 71 23-103 10-86 (96)
180 3u1l_A PRE-mRNA-splicing facto 99.6 2.1E-15 7.2E-20 134.0 9.1 77 19-101 131-229 (240)
181 2pe8_A Splicing factor 45; RRM 99.6 6.6E-15 2.2E-19 114.7 10.7 81 20-100 6-93 (105)
182 1fje_B Nucleolin RBD12, protei 99.6 4.1E-15 1.4E-19 123.5 9.4 78 18-100 95-173 (175)
183 2adc_A Polypyrimidine tract-bi 99.6 9.7E-15 3.3E-19 127.6 10.6 78 19-101 31-110 (229)
184 3pgw_A U1-A; protein-RNA compl 99.6 1.3E-14 4.4E-19 129.8 11.3 77 18-99 203-281 (282)
185 3smz_A Protein raver-1, ribonu 99.6 1.9E-14 6.6E-19 128.8 12.2 81 21-101 94-175 (284)
186 1fje_B Nucleolin RBD12, protei 99.6 1.3E-15 4.3E-20 126.6 3.6 82 18-101 9-91 (175)
187 2ghp_A U4/U6 snRNA-associated 99.5 9.4E-15 3.2E-19 131.4 9.3 81 19-100 207-290 (292)
188 3smz_A Protein raver-1, ribonu 99.5 1.2E-14 4.1E-19 130.2 9.2 84 18-102 180-265 (284)
189 2dit_A HIV TAT specific factor 99.5 6.1E-14 2.1E-18 109.7 11.9 80 18-101 11-102 (112)
190 1qm9_A Polypyrimidine tract-bi 99.5 1.3E-14 4.4E-19 123.1 8.3 76 21-101 2-79 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.5 1.9E-13 6.6E-18 105.6 12.7 77 19-101 7-90 (100)
192 1jmt_A Splicing factor U2AF 35 99.5 1.8E-14 6.1E-19 111.9 5.6 71 27-98 20-103 (104)
193 3sde_A Paraspeckle component 1 99.5 5.9E-14 2E-18 125.1 9.6 81 21-102 95-180 (261)
194 3v4m_A Splicing factor U2AF 65 99.5 9E-14 3.1E-18 108.2 9.3 81 20-100 3-96 (105)
195 3tyt_A Heterogeneous nuclear r 99.5 3.6E-14 1.2E-18 122.8 7.4 76 21-98 122-204 (205)
196 3sde_A Paraspeckle component 1 99.5 8.5E-14 2.9E-18 124.0 9.6 76 18-99 18-94 (261)
197 2ghp_A U4/U6 snRNA-associated 99.5 6.8E-14 2.3E-18 125.7 8.8 80 21-101 116-197 (292)
198 2g4b_A Splicing factor U2AF 65 99.5 1.4E-13 4.8E-18 113.5 9.9 72 21-99 3-86 (172)
199 1qm9_A Polypyrimidine tract-bi 99.5 8.7E-14 3E-18 118.0 8.7 75 21-100 119-196 (198)
200 2adc_A Polypyrimidine tract-bi 99.5 1.3E-13 4.5E-18 120.3 10.0 75 21-100 150-227 (229)
201 3ue2_A Poly(U)-binding-splicin 99.5 1.6E-13 5.4E-18 109.1 8.7 80 21-100 19-108 (118)
202 2yh0_A Splicing factor U2AF 65 99.4 3.1E-13 1.1E-17 113.9 10.0 73 21-100 3-87 (198)
203 3tht_A Alkylated DNA repair pr 99.3 3.1E-12 1.1E-16 119.1 9.1 75 18-98 14-96 (345)
204 3s6e_A RNA-binding protein 39; 99.2 2.2E-11 7.5E-16 96.2 6.8 76 21-100 6-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 1.3E-10 4.6E-15 92.6 8.8 78 16-99 12-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 3.6E-10 1.2E-14 85.4 8.3 73 21-102 6-87 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 3.8E-09 1.3E-13 91.4 7.7 67 34-100 141-212 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.9 2.7E-09 9.3E-14 81.0 5.5 71 20-99 13-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.3 2.9E-06 1E-10 65.9 9.0 74 19-98 18-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 2.4E-05 8.1E-10 60.1 10.5 73 18-98 4-81 (104)
211 1wey_A Calcipressin 1; structu 97.5 0.00037 1.3E-08 53.6 8.1 74 21-100 4-83 (104)
212 1whv_A Poly(A)-specific ribonu 97.4 0.00032 1.1E-08 53.3 6.3 62 15-84 8-69 (100)
213 1wwh_A Nucleoporin 35, nucleop 97.3 0.0013 4.5E-08 51.7 9.3 74 18-98 20-94 (119)
214 3ctr_A Poly(A)-specific ribonu 96.9 0.00091 3.1E-08 50.9 4.7 53 23-84 7-59 (101)
215 1uw4_A UPF3X; nonsense mediate 96.9 0.003 1E-07 47.4 7.4 64 23-86 2-67 (91)
216 3p3d_A Nucleoporin 53; structu 96.2 0.0065 2.2E-07 48.5 5.3 77 22-99 7-97 (132)
217 3pq1_A Poly(A) RNA polymerase; 96.1 0.0018 6.3E-08 62.1 2.2 57 22-84 53-109 (464)
218 2kn4_A Immunoglobulin G-bindin 95.6 0.0084 2.9E-07 48.2 3.8 33 51-85 2-34 (158)
219 2l08_A Regulator of nonsense t 95.1 0.02 6.9E-07 43.3 4.0 66 21-86 8-75 (97)
220 2i2y_A Fusion protein consists 92.3 0.046 1.6E-06 43.5 1.6 40 60-100 9-50 (150)
221 3d45_A Poly(A)-specific ribonu 90.4 0.52 1.8E-05 45.5 7.2 55 22-85 440-494 (507)
222 2g0c_A ATP-dependent RNA helic 65.3 13 0.00045 25.6 5.4 67 24-99 2-75 (76)
223 4f25_A Polyadenylate-binding p 58.4 2.1 7.1E-05 32.1 0.0 19 20-38 95-113 (115)
224 2cu1_A Mitogen-activated prote 50.4 36 0.0012 25.5 5.7 61 30-98 24-85 (103)
225 3fry_A Probable copper-exporti 48.6 48 0.0017 21.8 5.9 58 21-85 5-62 (73)
226 4eyt_A Telomerase associated p 41.0 1.1E+02 0.0036 22.6 8.9 69 20-96 10-86 (129)
227 3lpe_A Putative transcription 37.9 83 0.0028 22.6 6.1 34 48-86 39-72 (92)
228 2qyc_A Ferredoxin-like protein 35.6 1.2E+02 0.0042 21.7 6.8 56 23-79 6-71 (103)
229 3bgu_A Ferredoxin-like protein 34.9 1.2E+02 0.004 22.6 6.7 61 18-79 18-88 (116)
230 3h7h_B Transcription elongatio 34.9 72 0.0025 23.8 5.4 35 48-87 40-74 (106)
231 2lfv_A Protein DAMX; cell divi 39.3 9.1 0.00031 28.9 0.0 54 34-89 34-89 (106)
232 4e8u_A Putative uncharacterize 31.4 1.1E+02 0.0038 25.0 6.3 57 24-83 14-82 (172)
233 3bb5_A Stress responsive alpha 31.1 1.7E+02 0.0057 21.9 8.0 62 20-81 19-91 (121)
234 1q4r_A Protein AT3G17210; cent 29.3 1.2E+02 0.0042 22.2 5.9 61 21-81 10-81 (112)
235 2exu_A Transcription initiatio 28.2 77 0.0026 26.6 5.0 25 63-87 148-172 (200)
236 3ts2_A Protein LIN-28 homolog 25.8 11 0.00037 30.1 -0.7 28 37-72 2-29 (148)
237 2npt_B Mitogen-activated prote 25.7 1.9E+02 0.0066 21.3 6.1 49 30-86 36-85 (100)
238 2jrh_A Mitogen-activated prote 24.1 2E+02 0.0068 21.0 5.8 61 30-98 20-81 (94)
239 2i9x_A Putative septation prot 23.9 87 0.003 22.7 3.9 26 48-73 5-30 (87)
240 1h2v_Z 20 kDa nuclear CAP bind 22.4 17 0.00057 28.3 -0.2 12 73-84 52-63 (156)
241 3j21_T 50S ribosomal protein L 21.8 1.9E+02 0.0067 20.7 5.5 55 26-83 26-82 (86)
242 1tr0_A Stable protein 1; plant 21.5 2.3E+02 0.0079 20.3 6.2 59 21-79 8-79 (108)
243 2c60_A Human mitogen-activated 20.7 1.6E+02 0.0055 22.0 4.8 59 30-96 47-106 (111)
244 3fut_A Dimethyladenosine trans 20.6 78 0.0027 27.4 3.7 33 23-56 111-143 (271)
245 3uzu_A Ribosomal RNA small sub 20.5 35 0.0012 29.8 1.4 35 23-57 115-149 (279)
246 2ia9_A Putative septation prot 20.2 1.1E+02 0.0038 22.7 3.9 26 48-73 5-30 (100)
247 3bde_A MLL5499 protein; stress 20.1 2.8E+02 0.0095 20.7 6.6 58 22-79 21-86 (120)
No 1
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=4.5e-22 Score=164.75 Aligned_cols=82 Identities=21% Similarity=0.273 Sum_probs=77.3
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++. +|+|++|+|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4679999999999999999999999999999999999999999999999999999999999999874 599999999999
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
+..
T Consensus 117 ~~~ 119 (156)
T 1h2v_Z 117 AGF 119 (156)
T ss_dssp SCC
T ss_pred CCC
Confidence 653
No 2
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.4e-21 Score=152.52 Aligned_cols=88 Identities=59% Similarity=1.008 Sum_probs=82.1
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeE
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRA 93 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i 93 (279)
..+..+.+.++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++.+|+|++|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++..
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999643
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=8.6e-22 Score=151.93 Aligned_cols=80 Identities=25% Similarity=0.381 Sum_probs=75.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
+.++|||+|||+++||++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++. .|+|++|+|++|+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 457999999999999999999999999999999999999999999999999999999999999874 5999999999995
Q ss_pred c
Q 023634 100 L 100 (279)
Q Consensus 100 ~ 100 (279)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=153.70 Aligned_cols=83 Identities=16% Similarity=0.227 Sum_probs=77.6
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
+...++|||+||+++++|++|+++|++||+|++|+|++|+.|+++||||||+|++.++|++||+.+|. +|+|++|+|++
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35678999999999999999999999999999999999999999999999999999999999999875 59999999999
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8543
No 5
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.85 E-value=7.9e-21 Score=154.00 Aligned_cols=85 Identities=25% Similarity=0.411 Sum_probs=78.9
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
.++...++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++. .|+|++|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3556779999999999999999999999999999999999999999999999999999999999999875 599999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 117 ~~a~~~ 122 (139)
T 1u6f_A 117 ALAASG 122 (139)
T ss_dssp EESSCC
T ss_pred EECCCC
Confidence 999644
No 6
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.85 E-value=4.8e-21 Score=150.58 Aligned_cols=88 Identities=26% Similarity=0.330 Sum_probs=80.4
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
....+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++. .|+|++|
T Consensus 18 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 97 (115)
T 2cpz_A 18 SQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRL 97 (115)
T ss_dssp CCCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred cCcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345556779999999999999999999999999999999999999999999999999999999999999875 5999999
Q ss_pred EEEEcccCC
Q 023634 94 NCNLACLGV 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|++++.+.
T Consensus 98 ~V~~a~~~~ 106 (115)
T 2cpz_A 98 KVQLKRSKN 106 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEEcCCCC
Confidence 999996543
No 7
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=143.70 Aligned_cols=85 Identities=27% Similarity=0.519 Sum_probs=78.3
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~ 94 (279)
..++.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|++.++|++||+ ++ ..|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3456678999999999999999999999999999999999999999999999999999999999999 65 569999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++..
T Consensus 83 V~~a~~~ 89 (99)
T 2dgs_A 83 VKRAEPR 89 (99)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999644
No 8
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=143.29 Aligned_cols=84 Identities=31% Similarity=0.513 Sum_probs=78.4
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
+..+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|++.++|++||+.++. .|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 456779999999999999999999999999999999999999999999999999999999999999875 5999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 84 ~a~~~ 88 (99)
T 1whw_A 84 PSTIK 88 (99)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99654
No 9
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=148.44 Aligned_cols=83 Identities=30% Similarity=0.532 Sum_probs=77.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
++.+.++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|++.++|++||+.++. .|+|++|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45677999999999999999999999999999999999998 899999999999999999999999875 6999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99643
No 10
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=3.7e-20 Score=145.34 Aligned_cols=89 Identities=35% Similarity=0.464 Sum_probs=81.1
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
...+..+.++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344567889999999999999999999999999999999999999999999999999999999999999875 5999999
Q ss_pred EEEEcccCCC
Q 023634 94 NCNLACLGVQ 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
+|++++....
T Consensus 88 ~V~~a~~~~~ 97 (115)
T 2dgo_A 88 RTNWATRKPP 97 (115)
T ss_dssp EEEESSCCCC
T ss_pred EEEEccCCCC
Confidence 9999975543
No 11
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=2e-21 Score=149.21 Aligned_cols=84 Identities=17% Similarity=0.262 Sum_probs=76.7
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCC--EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-----ccC
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE--ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-----VID 89 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~--I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-----~i~ 89 (279)
..+....+|||+|||+++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.++. .|+
T Consensus 4 ~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~ 83 (95)
T 2lkz_A 4 HHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID 83 (95)
T ss_dssp CSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET
T ss_pred ccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC
Confidence 45567789999999999999999999999995 67999999999999999999999999999999999864 399
Q ss_pred CeeEEEEEccc
Q 023634 90 GRRANCNLACL 100 (279)
Q Consensus 90 Gr~i~V~~a~~ 100 (279)
||+|.|++|+.
T Consensus 84 Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 GKTIGVDFAKS 94 (95)
T ss_dssp TEEEEEEECCC
T ss_pred CEEEEEEEccC
Confidence 99999999953
No 12
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.1e-20 Score=141.07 Aligned_cols=83 Identities=34% Similarity=0.701 Sum_probs=76.8
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V 95 (279)
+.++.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++.+|+|++|+|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v 84 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDP 84 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999988777899999999
Q ss_pred EEc
Q 023634 96 NLA 98 (279)
Q Consensus 96 ~~a 98 (279)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 13
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.6e-20 Score=143.75 Aligned_cols=87 Identities=26% Similarity=0.331 Sum_probs=80.0
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i 93 (279)
.+.+....++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++ ..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPI 87 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBC
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999987 46999999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++..
T Consensus 88 ~v~~a~~~ 95 (105)
T 1x5u_A 88 RVNKASAH 95 (105)
T ss_dssp EEEETTTT
T ss_pred EEEECCCC
Confidence 99999643
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=141.00 Aligned_cols=81 Identities=32% Similarity=0.571 Sum_probs=76.2
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|++.++|++||+.++. .|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 4568999999999999999999999999999999999999999999999999999999999998874 699999999999
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
+.
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 53
No 15
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=144.44 Aligned_cols=86 Identities=26% Similarity=0.367 Sum_probs=79.6
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
..+..+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34567789999999999999999999999999999999999999999999999999999999999999874 59999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++..
T Consensus 89 v~~a~~~ 95 (103)
T 2cq0_A 89 VEWAKPS 95 (103)
T ss_dssp EEESSCC
T ss_pred EEECCCC
Confidence 9999643
No 16
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.3e-20 Score=145.33 Aligned_cols=87 Identities=29% Similarity=0.425 Sum_probs=79.9
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC------C-cc
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA------P-VI 88 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~------~-~i 88 (279)
+.+....++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ . .|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 4455678999999999999999999999999999999999999999999999999999999999999987 5 49
Q ss_pred CCeeEEEEEcccCC
Q 023634 89 DGRRANCNLACLGV 102 (279)
Q Consensus 89 ~Gr~i~V~~a~~~~ 102 (279)
+|++|+|++++.+.
T Consensus 89 ~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 89 DGRQLKVDLAVTRD 102 (111)
T ss_dssp SSCEEEEECCCCCC
T ss_pred cCEEEEEEECCCCc
Confidence 99999999996543
No 17
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=145.14 Aligned_cols=86 Identities=21% Similarity=0.394 Sum_probs=79.4
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~ 94 (279)
+.+....++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 4455678999999999999999999999999999999999999999999999999999999999999886 469999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++..
T Consensus 87 V~~a~~~ 93 (103)
T 2dnm_A 87 VQVARYG 93 (103)
T ss_dssp EEECSSC
T ss_pred EEECCcC
Confidence 9999643
No 18
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=1.5e-20 Score=145.29 Aligned_cols=87 Identities=29% Similarity=0.429 Sum_probs=79.7
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc---CC
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI---DG 90 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i---~G 90 (279)
....+.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|.+.++|++||+.++. .+ ++
T Consensus 6 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g 85 (106)
T 2dgp_A 6 SGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN 85 (106)
T ss_dssp CSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC
Confidence 445667889999999999999999999999999999999999999999999999999999999999999875 45 88
Q ss_pred eeEEEEEcccC
Q 023634 91 RRANCNLACLG 101 (279)
Q Consensus 91 r~i~V~~a~~~ 101 (279)
++|+|++++..
T Consensus 86 ~~l~v~~a~~~ 96 (106)
T 2dgp_A 86 RPIQVKPADSE 96 (106)
T ss_dssp SCCEEEECCCC
T ss_pred ceEEEEECCcc
Confidence 99999999643
No 19
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=143.63 Aligned_cols=85 Identities=35% Similarity=0.623 Sum_probs=78.5
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
....+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++. .|+|++|+|
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 86 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRV 86 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 3455779999999999999999999999999999999999999999999999999999999999999874 699999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 87 ~~a~~~ 92 (102)
T 1x5s_A 87 DQAGKS 92 (102)
T ss_dssp EEEECC
T ss_pred EECCCC
Confidence 999644
No 20
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=3.7e-21 Score=145.94 Aligned_cols=79 Identities=18% Similarity=0.312 Sum_probs=74.0
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C-ccCCeeEEEEEcc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P-VIDGRRANCNLAC 99 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~-~i~Gr~i~V~~a~ 99 (279)
++|||+|||+++||++|+++|++|| +|++|+|++|+.|+++||||||+|++.++|++||+.++ . .|+|++|+|++++
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~ 81 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSD 81 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcC
Confidence 6899999999999999999999999 89999999999999999999999999999999999874 3 4999999999996
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
++
T Consensus 82 ~~ 83 (91)
T 2lxi_A 82 PK 83 (91)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 21
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-20 Score=144.90 Aligned_cols=85 Identities=31% Similarity=0.379 Sum_probs=78.7
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
....+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|++.++|++||+.++. .|+|++|+|
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 86 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456779999999999999999999999999999999999999999999999999999999999999875 599999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 87 ~~a~~~ 92 (102)
T 2cqb_A 87 NLAKPM 92 (102)
T ss_dssp EECCCC
T ss_pred EeCCCC
Confidence 999654
No 22
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=1.3e-20 Score=147.54 Aligned_cols=87 Identities=33% Similarity=0.612 Sum_probs=77.0
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
.++.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++..|+|++|+|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~ 99 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPK 99 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEE
Confidence 34567799999999999999999999999999999999999999999999999999999999999998877999999999
Q ss_pred EcccCCC
Q 023634 97 LACLGVQ 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
++..+..
T Consensus 100 ~a~~~~~ 106 (109)
T 2rs2_A 100 VAFPRRA 106 (109)
T ss_dssp ECCCCCC
T ss_pred EccCCCC
Confidence 9975543
No 23
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.8e-20 Score=149.39 Aligned_cols=89 Identities=22% Similarity=0.294 Sum_probs=81.0
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
..+....+.++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++. +|+|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 3445566788999999999999999999999999999999999999999999999999999999999998874 699999
Q ss_pred EEEEEcccCC
Q 023634 93 ANCNLACLGV 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++++...
T Consensus 94 l~v~~a~~~~ 103 (126)
T 3ex7_B 94 ISVDWCFVRG 103 (126)
T ss_dssp CEEEESEESS
T ss_pred EEEEEecCCC
Confidence 9999997544
No 24
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=6.6e-21 Score=150.29 Aligned_cols=85 Identities=27% Similarity=0.386 Sum_probs=78.3
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
.+.++.+.++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++. +|+|++|
T Consensus 33 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 112 (118)
T 2khc_A 33 KQIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRL 112 (118)
T ss_dssp SSCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 345567789999999999999999999999999999999999999999999999999999999999999875 5999999
Q ss_pred EEEEcc
Q 023634 94 NCNLAC 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+|++++
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999974
No 25
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=143.28 Aligned_cols=87 Identities=24% Similarity=0.374 Sum_probs=79.8
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeec-CCCCCccceEEEEeCCHHHHHHHHHhc-C-CccCCe
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD-KATGRSKGYGFVTFREPEAAMKACVDA-A-PVIDGR 91 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~d-k~tg~skG~aFV~F~~~e~A~~Ai~~~-~-~~i~Gr 91 (279)
.+..+...++|||+|||+++++++|+++|++||+|++|+|+++ +.+++++|||||+|.+.++|++||+.+ + ..|+|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3446677899999999999999999999999999999999999 789999999999999999999999998 6 569999
Q ss_pred eEEEEEcccC
Q 023634 92 RANCNLACLG 101 (279)
Q Consensus 92 ~i~V~~a~~~ 101 (279)
+|+|++++..
T Consensus 88 ~l~v~~a~~~ 97 (107)
T 2cph_A 88 RLVLEWADSE 97 (107)
T ss_dssp BCEEEECCCC
T ss_pred EEEEEeCCCC
Confidence 9999999654
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=141.57 Aligned_cols=82 Identities=27% Similarity=0.416 Sum_probs=76.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v-~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
...++|||+|||+++++++|+++|++||.|+++ +|++|+.+++++|||||+|++.++|++||+.++. .|+|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 467899999999999999999999999999999 9999999999999999999999999999998875 59999999999
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
++..
T Consensus 83 a~~~ 86 (96)
T 1x5t_A 83 AFKK 86 (96)
T ss_dssp SCCC
T ss_pred eccc
Confidence 9543
No 27
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.3e-20 Score=142.18 Aligned_cols=86 Identities=36% Similarity=0.630 Sum_probs=78.6
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~ 94 (279)
.+..+.+.++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+. .+.|+|++|+
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~ 86 (103)
T 2cqg_A 8 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCD 86 (103)
T ss_dssp CSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEE
T ss_pred CCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEE
Confidence 344566779999999999999999999999999999999999999999999999999999999999995 4579999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++.+
T Consensus 87 v~~a~~~ 93 (103)
T 2cqg_A 87 CKLPNSK 93 (103)
T ss_dssp EECCCTT
T ss_pred EEecCCC
Confidence 9999654
No 28
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=142.66 Aligned_cols=87 Identities=24% Similarity=0.395 Sum_probs=78.8
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHh-cCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Cc-cCCeeE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQ-FGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PV-IDGRRA 93 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~-fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~-i~Gr~i 93 (279)
.+....++|||+|||+++++++|+++|++ ||+|++|+|++|+ +++++|||||+|.+.++|++||+.++ .. |+|++|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l 82 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPV 82 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeE
Confidence 34567799999999999999999999999 9999999999999 99999999999999999999999987 46 999999
Q ss_pred EEEEcccCCCC
Q 023634 94 NCNLACLGVQR 104 (279)
Q Consensus 94 ~V~~a~~~~~~ 104 (279)
+|++++....+
T Consensus 83 ~v~~a~~~~~~ 93 (104)
T 2dhg_A 83 RLSVAIPKASR 93 (104)
T ss_dssp CCCBCCCCCSC
T ss_pred EEEEccCCCcC
Confidence 99999654433
No 29
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=6.4e-20 Score=141.36 Aligned_cols=85 Identities=20% Similarity=0.358 Sum_probs=77.4
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i 93 (279)
.+..+...++|||+|||+++++++|+++|++|| |++|+|++|+.+++++|||||+|++.++|++|| .++ .+|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 445567789999999999999999999999996 999999999999999999999999999999999 776 46999999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++..
T Consensus 86 ~V~~a~~~ 93 (103)
T 2dng_A 86 RVDIAEGR 93 (103)
T ss_dssp EEEECCCC
T ss_pred EEEEecCC
Confidence 99999643
No 30
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=141.93 Aligned_cols=87 Identities=30% Similarity=0.458 Sum_probs=79.1
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
.....+.+.++|||+|||+++++++|+++|++||+|++|+|+++ +++++|||||+|++.++|++||+.++. .|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34556678899999999999999999999999999999999998 799999999999999999999999874 699999
Q ss_pred EEEEEcccCC
Q 023634 93 ANCNLACLGV 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++++...
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2d9p_A 85 LYVALAQRKE 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEecccc
Confidence 9999996543
No 31
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.8e-20 Score=141.85 Aligned_cols=85 Identities=16% Similarity=0.420 Sum_probs=77.6
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHhcC-CccCCee
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t-g~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~ 92 (279)
.+..+...++|||+|||+++++++|+++|++|| |++|+|++++.+ ++++|||||+|++.++|++|| .++ .+|+|++
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 8 SRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 445667789999999999999999999999999 999999999988 999999999999999999999 776 5699999
Q ss_pred EEEEEcccC
Q 023634 93 ANCNLACLG 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|++++.+
T Consensus 86 l~V~~a~~~ 94 (104)
T 1wi8_A 86 IRVDVADQA 94 (104)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCC
Confidence 999999643
No 32
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.2e-20 Score=144.29 Aligned_cols=87 Identities=34% Similarity=0.721 Sum_probs=79.3
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~ 94 (279)
...++.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|++.++|++||+.....|+|++|+
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~ 88 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNID 88 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEB
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 44567788999999999999999999999999999999999999999999999999999999999999933469999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++.+
T Consensus 89 V~~a~~~ 95 (105)
T 2dh8_A 89 PKPCTPR 95 (105)
T ss_dssp CCCSCCS
T ss_pred EEEccCC
Confidence 9998644
No 33
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.2e-20 Score=139.27 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=79.3
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
........++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++. .|+|++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344566789999999999999999999999999999999999999999999999999999999999999875 5999999
Q ss_pred EEEEccc
Q 023634 94 NCNLACL 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
+|++++.
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999853
No 34
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=140.77 Aligned_cols=82 Identities=26% Similarity=0.462 Sum_probs=75.8
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCC---CCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKA---TGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~---tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
.+.++|||+|||+++++++|+++|++||+|++|+|++++. |++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999887 669999999999999999999999874 699999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 83 ~~a~~~ 88 (98)
T 2cpf_A 83 RISERA 88 (98)
T ss_dssp ECSSCS
T ss_pred EEccCC
Confidence 999644
No 35
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=137.25 Aligned_cols=81 Identities=37% Similarity=0.515 Sum_probs=74.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (279)
...++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356899999999999999999999999999999999999999999999999999999999999987 4699999999999
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 36
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=139.13 Aligned_cols=84 Identities=20% Similarity=0.395 Sum_probs=77.8
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
.......++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++. .|+|++|+
T Consensus 10 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 89 (94)
T 2e5h_A 10 GGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIK 89 (94)
T ss_dssp CSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 33456779999999999999999999999999999999999999999999999999999999999999875 59999999
Q ss_pred EEEcc
Q 023634 95 CNLAC 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|++++
T Consensus 90 v~~ak 94 (94)
T 2e5h_A 90 ASIAI 94 (94)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99984
No 37
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=139.19 Aligned_cols=86 Identities=23% Similarity=0.289 Sum_probs=76.9
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
...++...++|||+|||+++++++|+++|++||+|++|+|++|+.+ +||||||+|.+.++|++||+.++. .|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 8 MMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 3456677899999999999999999999999999999999998643 689999999999999999998875 5999999
Q ss_pred EEEEcccCC
Q 023634 94 NCNLACLGV 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|++++...
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2cqi_A 86 KVNWATTPS 94 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEECCCCc
Confidence 999996543
No 38
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=4.6e-20 Score=136.74 Aligned_cols=81 Identities=32% Similarity=0.457 Sum_probs=76.1
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
+.+.++|||+|||+++++++|+++|++||+|++++|++|+.+++++|||||+|++.++|++||+.++. .|+|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45679999999999999999999999999999999999999999999999999999999999998874 59999999999
Q ss_pred cc
Q 023634 98 AC 99 (279)
Q Consensus 98 a~ 99 (279)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 39
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.82 E-value=1.5e-20 Score=165.92 Aligned_cols=80 Identities=21% Similarity=0.381 Sum_probs=74.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (279)
+.++|||+||+++++|++|+++|++|| +|++|+|++|+.++++||||||+|++.++|++||+.|+ .+|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567999999999999999999999999 99999999999999999999999999999999999987 569999999999
Q ss_pred ccc
Q 023634 98 ACL 100 (279)
Q Consensus 98 a~~ 100 (279)
++.
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.1e-20 Score=141.55 Aligned_cols=87 Identities=23% Similarity=0.318 Sum_probs=79.7
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i 93 (279)
.+....+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999999886 46999999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++.+
T Consensus 96 ~V~~a~~~ 103 (106)
T 1p27_B 96 SVDWCFVR 103 (106)
T ss_dssp EEEESEES
T ss_pred EEEeecCC
Confidence 99999654
No 41
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.82 E-value=8.8e-20 Score=140.78 Aligned_cols=84 Identities=26% Similarity=0.284 Sum_probs=76.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCC---eeE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG---RRA 93 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G---r~i 93 (279)
.+...++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|++.++|++||+.++. .|.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 44567999999999999999999999999999999999998 799999999999999999999999875 5787 999
Q ss_pred EEEEcccCC
Q 023634 94 NCNLACLGV 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|++++...
T Consensus 90 ~V~~a~~~~ 98 (105)
T 2dnh_A 90 VVKFADTDK 98 (105)
T ss_dssp EEEESCSSC
T ss_pred EEEECccCc
Confidence 999996543
No 42
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.9e-20 Score=143.75 Aligned_cols=86 Identities=23% Similarity=0.331 Sum_probs=79.1
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEE--------EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--------EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP- 86 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~--------~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~- 86 (279)
+.++.+.++|||+|||+++++++|+++|++||.|+ +|+|+.|+.+++++|||||+|.+.++|++||+.++.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 44667889999999999999999999999999999 699999999999999999999999999999999874
Q ss_pred ccCCeeEEEEEcccC
Q 023634 87 VIDGRRANCNLACLG 101 (279)
Q Consensus 87 ~i~Gr~i~V~~a~~~ 101 (279)
.|+|++|+|++++..
T Consensus 89 ~~~g~~l~V~~a~~~ 103 (113)
T 2cpe_A 89 DFQGSKLKVSLARKK 103 (113)
T ss_dssp EETTEECEEECSSCC
T ss_pred ccCCCEEEEEECCCC
Confidence 699999999999543
No 43
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=8.8e-20 Score=134.63 Aligned_cols=78 Identities=33% Similarity=0.520 Sum_probs=74.3
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEccc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACL 100 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~~ 100 (279)
++|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|++.++|++||+.++ ..|+|++|+|++++.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 689999999999999999999999999999999999999999999999999999999999987 469999999999964
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=139.11 Aligned_cols=84 Identities=20% Similarity=0.409 Sum_probs=77.4
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+.+.++|||+|||+++++++|+++|++||+|++|+|+.++ +++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 345677899999999999999999999999999999999998 899999999999999999999999875 599999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
+++++.
T Consensus 91 ~~a~~~ 96 (100)
T 2do4_A 91 AISNSG 96 (100)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 999643
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=2.8e-19 Score=139.90 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=76.9
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
......++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|++.++|++||+.++. .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 88 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHV 88 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEE
Confidence 345667999999999999999999999999999999999998 599999999999999999999998874 699999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 89 ~~a~~~ 94 (114)
T 2do0_A 89 KMDERA 94 (114)
T ss_dssp EECSCC
T ss_pred EEcccC
Confidence 998643
No 46
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=1.1e-20 Score=142.55 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=70.8
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
.+|||+|||++++|++|+++|++|| +|.+++|++|+.++++||||||+|.+.++|++||+.++. +|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999999999999999999999999999999999874 6999999999986
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 54
No 47
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.8e-20 Score=146.40 Aligned_cols=84 Identities=36% Similarity=0.655 Sum_probs=77.0
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~ 97 (279)
.+...++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+....+|+|++|+|++
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34466999999999999999999999999999999999999999999999999999999999999944569999999999
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
++.+
T Consensus 103 a~~~ 106 (116)
T 1x4b_A 103 AVAR 106 (116)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9643
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=9.9e-20 Score=141.79 Aligned_cols=89 Identities=24% Similarity=0.313 Sum_probs=80.7
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
..+....+.++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++. .|+|++
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 3344556779999999999999999999999999999999999999999999999999999999999998875 599999
Q ss_pred EEEEEcccCC
Q 023634 93 ANCNLACLGV 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++++...
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999997543
No 49
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=1.7e-20 Score=151.27 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=79.7
Q ss_pred cCCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEE--EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-C---
Q 023634 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--AVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-P--- 86 (279)
Q Consensus 13 ~~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~--- 86 (279)
...+..+...++|||+|||++++|++|+++|++||+|.. |+|++|+.++++||||||+|++. +|++||+.++ .
T Consensus 14 ~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~ 92 (131)
T 2m2b_A 14 GSEPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPP 92 (131)
T ss_dssp CCCCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCC
Confidence 344556677899999999999999999999999999977 99999999999999999999999 9999999987 4
Q ss_pred -ccCCeeEEEEEcccC
Q 023634 87 -VIDGRRANCNLACLG 101 (279)
Q Consensus 87 -~i~Gr~i~V~~a~~~ 101 (279)
+|+||+|+|++++..
T Consensus 93 ~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 93 LTIDGKTINVEFAKGS 108 (131)
T ss_dssp CCGGGCCCCCEECCCS
T ss_pred ccCCCEEEEEEECCCC
Confidence 799999999999653
No 50
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=138.80 Aligned_cols=83 Identities=22% Similarity=0.340 Sum_probs=77.0
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEE-EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee---
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL-EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR--- 92 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~-~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~--- 92 (279)
.....++|||+|||++++|++|+++|++||+|+ +|+|++|+.+++++|||||+|.+.++|++||+.++. .|+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 999999999999999999999999999999999875 599999
Q ss_pred -EEEEEccc
Q 023634 93 -ANCNLACL 100 (279)
Q Consensus 93 -i~V~~a~~ 100 (279)
|+|++++.
T Consensus 85 ~l~v~~a~~ 93 (99)
T 2div_A 85 RFKLNYATY 93 (99)
T ss_dssp ECCEEETTC
T ss_pred eEEEeecCC
Confidence 99999853
No 51
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.7e-19 Score=137.66 Aligned_cols=86 Identities=29% Similarity=0.493 Sum_probs=77.1
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
....+.+.++|||+|||+++++++|+++|++||+|++|+|++++. .++|||||+|++.++|++||+.++. .|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 8 NSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 345667789999999999999999999999999999999999864 3899999999999999999999874 6999999
Q ss_pred EEEEcccCC
Q 023634 94 NCNLACLGV 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|++++...
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999996543
No 52
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=7.3e-20 Score=144.40 Aligned_cols=80 Identities=28% Similarity=0.420 Sum_probs=72.3
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..++|||+|||++++|++|+++|++||+|++|+|++|+ +++||||||+|++.++|++||+.++. +|+|++|+|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 45899999999999999999999874 6999999999986
Q ss_pred cCC
Q 023634 100 LGV 102 (279)
Q Consensus 100 ~~~ 102 (279)
.+.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
No 53
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=8.6e-20 Score=138.19 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=76.0
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
.+..+...++|||+|||+++++++|+++|++||+|++|+|++|+. ++++|||||+|++.++|++||+.++. .|+|++|
T Consensus 9 ~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (95)
T 2ywk_A 9 FPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPI 87 (95)
T ss_dssp ---CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEE
Confidence 345667789999999999999999999999999999999999986 99999999999999999999998874 6999999
Q ss_pred EEEEcc
Q 023634 94 NCNLAC 99 (279)
Q Consensus 94 ~V~~a~ 99 (279)
+|++++
T Consensus 88 ~V~~a~ 93 (95)
T 2ywk_A 88 NVSGPS 93 (95)
T ss_dssp EEECCC
T ss_pred EEEEcC
Confidence 999985
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.81 E-value=3.8e-20 Score=142.50 Aligned_cols=83 Identities=20% Similarity=0.179 Sum_probs=77.1
Q ss_pred CCCccEEEECCCCc------cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCC-
Q 023634 19 DTTYTKVFVGGLAW------ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG- 90 (279)
Q Consensus 19 d~~~~~lfVgnLp~------~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G- 90 (279)
+...++|||+|||+ ++++++|+++|++||+|++|+|++|+.|+++||||||+|.+.++|++||+.++. .|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34568999999999 999999999999999999999999999999999999999999999999999875 5999
Q ss_pred eeEEEEEcccC
Q 023634 91 RRANCNLACLG 101 (279)
Q Consensus 91 r~i~V~~a~~~ 101 (279)
+.|+|+++.+.
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999653
No 55
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.4e-20 Score=147.60 Aligned_cols=85 Identities=21% Similarity=0.293 Sum_probs=77.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
++.+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|++.++|++|| .++. .|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999 7764 6999999999
Q ss_pred EcccCCC
Q 023634 97 LACLGVQ 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
+++....
T Consensus 100 ~a~~~~~ 106 (114)
T 2cq4_A 100 ASQAEKN 106 (114)
T ss_dssp EHHHHHH
T ss_pred ecCCCcc
Confidence 9975443
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=141.75 Aligned_cols=88 Identities=32% Similarity=0.511 Sum_probs=80.5
Q ss_pred CCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 14 AGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 14 ~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
+.+..+...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|++
T Consensus 18 ~~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~ 97 (108)
T 2jrs_A 18 NLQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRP 97 (108)
T ss_dssp SSCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred ccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3455667789999999999999999999999999999999999999999999999999999999999998875 599999
Q ss_pred EEEEEcccC
Q 023634 93 ANCNLACLG 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|++++.+
T Consensus 98 l~V~~a~~k 106 (108)
T 2jrs_A 98 MKVGHVTER 106 (108)
T ss_dssp CEEECSCSS
T ss_pred EEEEEcccC
Confidence 999998643
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=138.47 Aligned_cols=84 Identities=27% Similarity=0.394 Sum_probs=77.8
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP- 86 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--------v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~- 86 (279)
+......++|||+|||+++++++|+++|++||.|++ ++|++|+.++++||||||+|.+.++|++||+.++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 445567799999999999999999999999999999 99999999999999999999999999999998874
Q ss_pred ccCCeeEEEEEcc
Q 023634 87 VIDGRRANCNLAC 99 (279)
Q Consensus 87 ~i~Gr~i~V~~a~ 99 (279)
.|+|++|+|++++
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 6999999999973
No 58
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=1.8e-19 Score=137.07 Aligned_cols=80 Identities=24% Similarity=0.495 Sum_probs=75.6
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEccc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~~ 100 (279)
.++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|+.|+|++++.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999875 59999999999965
Q ss_pred C
Q 023634 101 G 101 (279)
Q Consensus 101 ~ 101 (279)
.
T Consensus 82 ~ 82 (96)
T 2x1f_A 82 S 82 (96)
T ss_dssp S
T ss_pred C
Confidence 4
No 59
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-20 Score=134.87 Aligned_cols=76 Identities=38% Similarity=0.748 Sum_probs=73.4
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a 98 (279)
++|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|.+.++|++||+.++..|+|++|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999999997799999999986
No 60
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.2e-19 Score=138.47 Aligned_cols=84 Identities=18% Similarity=0.335 Sum_probs=77.1
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCC-EEEEEEe-ecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeeEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVI-TDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRAN 94 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~-I~~v~i~-~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~Gr~i~ 94 (279)
.+.++|||+|||+++++++|+++|++||+ |++|.|+ .++.++++||||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45689999999999999999999999998 9999998 888899999999999999999999999985 359999999
Q ss_pred EEEcccCCC
Q 023634 95 CNLACLGVQ 103 (279)
Q Consensus 95 V~~a~~~~~ 103 (279)
|++++....
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999976544
No 61
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.80 E-value=9.8e-20 Score=146.96 Aligned_cols=85 Identities=25% Similarity=0.407 Sum_probs=78.8
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
..+....++|||+|||+++++++|+++|++||+|++|+|++|+.++++||||||+|++.++|++||+.++. +|+|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556779999999999999999999999999999999999999999999999999999999999999874 59999999
Q ss_pred EEEccc
Q 023634 95 CNLACL 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|++++.
T Consensus 120 V~~a~~ 125 (129)
T 2kxn_B 120 VDFSIT 125 (129)
T ss_dssp ESCCSS
T ss_pred EEEecC
Confidence 999864
No 62
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=1.1e-19 Score=135.74 Aligned_cols=80 Identities=19% Similarity=0.428 Sum_probs=74.7
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a 98 (279)
.+.++|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|.+.++|++|| .++ ..|+|++|+|+++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 35689999999999999999999999999999999999999999999999999999999999 776 5699999999998
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
+.
T Consensus 83 ~~ 84 (89)
T 3ucg_A 83 RT 84 (89)
T ss_dssp TT
T ss_pred cC
Confidence 54
No 63
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.3e-19 Score=138.71 Aligned_cols=83 Identities=19% Similarity=0.323 Sum_probs=74.0
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
....+...++|||+|||+++++++|+++|++||+|++|+|+.+ ++++|||||+|++.++|++||+.++. +|+|++|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 91 (109)
T 1x4a_A 15 RGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRL 91 (109)
T ss_dssp SCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 3445667899999999999999999999999999999999654 55899999999999999999999874 5999999
Q ss_pred EEEEccc
Q 023634 94 NCNLACL 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
+|++++.
T Consensus 92 ~V~~a~~ 98 (109)
T 1x4a_A 92 RVEFPRS 98 (109)
T ss_dssp EEECCCC
T ss_pred EEEEccc
Confidence 9999854
No 64
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7.1e-20 Score=140.92 Aligned_cols=87 Identities=26% Similarity=0.517 Sum_probs=79.6
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
+..+...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|+.|+
T Consensus 2 p~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (104)
T 1p1t_A 2 PAVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81 (104)
T ss_dssp CCSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBE
T ss_pred CCcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34456779999999999999999999999999999999999999999999999999999999999999875 59999999
Q ss_pred EEEcccCC
Q 023634 95 CNLACLGV 102 (279)
Q Consensus 95 V~~a~~~~ 102 (279)
|++++...
T Consensus 82 v~~a~~~~ 89 (104)
T 1p1t_A 82 VDNAASEK 89 (104)
T ss_dssp EEETTCTT
T ss_pred EEeCCCcc
Confidence 99996543
No 65
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=133.98 Aligned_cols=80 Identities=28% Similarity=0.436 Sum_probs=74.4
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCC-ccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR-SKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~-skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
+.++|||+|||+++++++|+++|++||+|.+++|+.++.++. ++|||||+|.+.++|++||+.++. .|+|++|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999988766 999999999999999999998874 699999999999
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
.+
T Consensus 83 ~~ 84 (88)
T 4a8x_A 83 LA 84 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 66
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.1e-19 Score=138.63 Aligned_cols=83 Identities=19% Similarity=0.298 Sum_probs=77.3
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+...++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|++.++|++||+.++. .|+|++|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3556779999999999999999999999999999999999999999999999999999999999999974 699999999
Q ss_pred EEcc
Q 023634 96 NLAC 99 (279)
Q Consensus 96 ~~a~ 99 (279)
++++
T Consensus 90 ~~a~ 93 (98)
T 2cqp_A 90 VLGS 93 (98)
T ss_dssp EESS
T ss_pred EEcC
Confidence 9984
No 67
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5e-19 Score=135.02 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=72.8
Q ss_pred CCccEEEECCCCccCcHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 20 TTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
.+.++|||+|||+++++++|+ ++|++||+|++|+|++|+.+ ||||||+|++.++|++||+.++. +|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999999865 89999999999999999999976 59999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++..
T Consensus 84 V~~a~~~ 90 (96)
T 2dgx_A 84 VSLATGA 90 (96)
T ss_dssp EEECCCS
T ss_pred EEEcCCC
Confidence 9999543
No 68
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=149.14 Aligned_cols=80 Identities=23% Similarity=0.413 Sum_probs=74.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcC--CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFG--EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG--~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (279)
+.++|||+|||++++|++|+++|++|| +|.+|+|++|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 99999999999999999999999999999999999987 469999999999
Q ss_pred ccc
Q 023634 98 ACL 100 (279)
Q Consensus 98 a~~ 100 (279)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 853
No 69
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.2e-19 Score=140.39 Aligned_cols=78 Identities=14% Similarity=0.211 Sum_probs=70.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeeEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRAN 94 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~Gr~i~ 94 (279)
.+...++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 3456799999999999999999999999999999999876 7899999999999999999764 469999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++.+
T Consensus 86 V~~A~~~ 92 (105)
T 1sjq_A 86 IQFSNHK 92 (105)
T ss_dssp BCCCSSS
T ss_pred EEEcCCC
Confidence 9999654
No 70
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=5.1e-19 Score=146.16 Aligned_cols=84 Identities=27% Similarity=0.476 Sum_probs=78.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.....++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++. .|+|+.|+|+
T Consensus 66 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 145 (158)
T 2kn4_A 66 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 145 (158)
T ss_dssp CCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 345678999999999999999999999999999999999999999999999999999999999999875 5999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 146 ~a~~~ 150 (158)
T 2kn4_A 146 MARYG 150 (158)
T ss_dssp EECCS
T ss_pred ECCCC
Confidence 99654
No 71
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.79 E-value=6.3e-20 Score=138.96 Aligned_cols=83 Identities=18% Similarity=0.278 Sum_probs=74.2
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
......++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v 89 (95)
T 2ek1_A 10 SGKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (95)
T ss_dssp -----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEE
Confidence 3445669999999999999999999999999999999999999999999999999999999999998874 699999999
Q ss_pred EEcc
Q 023634 96 NLAC 99 (279)
Q Consensus 96 ~~a~ 99 (279)
++++
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 9875
No 72
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=4.8e-19 Score=133.27 Aligned_cols=82 Identities=27% Similarity=0.485 Sum_probs=75.1
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+...++|||+|||+++++++|+++|++||+|++|+|+++ +++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 80 (92)
T 2dgv_A 3 SGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDV 80 (92)
T ss_dssp CSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34567799999999999999999999999999999999985 789999999999999999999999874 599999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
++++.
T Consensus 81 ~~a~~ 85 (92)
T 2dgv_A 81 RIDRN 85 (92)
T ss_dssp EECSC
T ss_pred EEcCC
Confidence 99954
No 73
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=139.65 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=75.5
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~ 97 (279)
.+...++|||+|||+++++++|+++|++||+|.+|+|++|+. +++||||||+|++.++|++||+..+..|+|+.|.|++
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456779999999999999999999999999999999999987 9999999999999999999999434679999999999
Q ss_pred ccc
Q 023634 98 ACL 100 (279)
Q Consensus 98 a~~ 100 (279)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 864
No 74
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=4.8e-19 Score=137.05 Aligned_cols=83 Identities=30% Similarity=0.426 Sum_probs=76.5
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
+......++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|.+.++|++||+.++. +|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4455678999999999999999999999999999999999998 899999999999999999999999864 69999999
Q ss_pred EEEcc
Q 023634 95 CNLAC 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|++++
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99984
No 75
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.2e-19 Score=136.98 Aligned_cols=82 Identities=24% Similarity=0.260 Sum_probs=74.6
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEE-EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE-AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~-v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V 95 (279)
.+....++|||+|||++++|++|+++|++||.|.+ |+|+.| .+++++|||||+|++.++|++||+.....|++|.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34467799999999999999999999999999998 888888 6899999999999999999999999556799999999
Q ss_pred EEcc
Q 023634 96 NLAC 99 (279)
Q Consensus 96 ~~a~ 99 (279)
.++.
T Consensus 89 ~~~~ 92 (104)
T 1wg5_A 89 FKSS 92 (104)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9985
No 76
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5.1e-19 Score=140.60 Aligned_cols=79 Identities=24% Similarity=0.437 Sum_probs=74.2
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (279)
+.++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|++.++|++|| .++ ..|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999999999999999999999999999 676 56999999999985
Q ss_pred c
Q 023634 100 L 100 (279)
Q Consensus 100 ~ 100 (279)
.
T Consensus 114 ~ 114 (124)
T 2jwn_A 114 T 114 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.7e-19 Score=138.61 Aligned_cols=81 Identities=21% Similarity=0.289 Sum_probs=72.9
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
....+.++|||+|||++++|++|+++|++|| |++|+|++|+ ++++||||||+|++.++|++||+....+|++|.|+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELF 87 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEE
Confidence 4456778999999999999999999999999 4599999998 8999999999999999999999654457999999999
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
++.
T Consensus 88 ~~~ 90 (102)
T 1wez_A 88 LNS 90 (102)
T ss_dssp EEC
T ss_pred ECC
Confidence 884
No 78
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=1.7e-19 Score=146.62 Aligned_cols=86 Identities=27% Similarity=0.449 Sum_probs=79.0
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
+.++.+.++|||+|||+++++++|+++|++||+|++|+|++++.++++||||||+|++.++|++||+.++. .|+|++|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999874 59999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++..
T Consensus 121 V~~a~~~ 127 (135)
T 2lea_A 121 VQMARYG 127 (135)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999653
No 79
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.6e-18 Score=133.54 Aligned_cols=81 Identities=28% Similarity=0.400 Sum_probs=71.5
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
....+.++|||+|||+++++++|+++|++||+|++|+|+ ++||||+|++.++|++||+.++. +|+|++|+|
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEI 77 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEE
Confidence 345677999999999999999999999999999999986 45999999999999999999875 599999999
Q ss_pred EEcccCCCCC
Q 023634 96 NLACLGVQRS 105 (279)
Q Consensus 96 ~~a~~~~~~~ 105 (279)
++++....+.
T Consensus 78 ~~a~~~~~~~ 87 (103)
T 2dgu_A 78 VFAKPPDQKR 87 (103)
T ss_dssp EECCCCCCCC
T ss_pred EEcCCCcccc
Confidence 9997654443
No 80
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.3e-20 Score=144.46 Aligned_cols=83 Identities=17% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCE-EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEI-LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I-~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
.+.+.++|||+|||+++++++|+++|++||.| .+|+|++|+ ++++||||||+|++.++|++||+....+|+|+.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEEE
Confidence 44567899999999999999999999999999 899999998 8999999999999999999999984456999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
++...
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98654
No 81
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.5e-19 Score=131.92 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=75.3
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+.+.++|||+|||+++++++|+++|++| +|.+|+|+++ .+++++|||||+|++.++|++||+ ++. .|+|+.|+|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v 81 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEV 81 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEE
Confidence 455677999999999999999999999999 9999999999 789999999999999999999999 875 599999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++.+
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 999543
No 82
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.1e-19 Score=131.73 Aligned_cols=75 Identities=31% Similarity=0.544 Sum_probs=71.6
Q ss_pred EEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEc
Q 023634 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a 98 (279)
+|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|++.++|++||+..+..|+|++|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999999999999999999999999999999998667899999999875
No 83
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=2.2e-18 Score=134.19 Aligned_cols=77 Identities=18% Similarity=0.174 Sum_probs=70.5
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCC-----
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG----- 90 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G----- 90 (279)
......++|||+|||++++|++|+++|++||+|++|+|++| |||||+|++.++|++||+.++. +|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34567799999999999999999999999999999999876 7999999999999999999975 5999
Q ss_pred eeEEEEEccc
Q 023634 91 RRANCNLACL 100 (279)
Q Consensus 91 r~i~V~~a~~ 100 (279)
+.|+|++++.
T Consensus 83 ~~i~V~~a~~ 92 (108)
T 1x4c_A 83 AYIRVKVDGP 92 (108)
T ss_dssp EEEEEEESSC
T ss_pred eEEEEEeCCC
Confidence 9999999965
No 84
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=1.7e-19 Score=130.92 Aligned_cols=75 Identities=40% Similarity=0.738 Sum_probs=70.1
Q ss_pred EEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEc
Q 023634 24 KVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (279)
Q Consensus 24 ~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a 98 (279)
+|||+|||+++++++|+++|++||+|.+|++++++.+++++|||||+|++.++|++|++..+..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999999999999999999999999999999983345799999999875
No 85
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.3e-20 Score=135.67 Aligned_cols=79 Identities=29% Similarity=0.476 Sum_probs=73.0
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|++.++|++||+.++. .|+|+.|+|++.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 4668999999999999999999999999999999999999999999999999999999999998864 589988876654
No 86
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=138.43 Aligned_cols=84 Identities=18% Similarity=0.424 Sum_probs=72.2
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecC-CCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDK-ATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk-~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i 93 (279)
.......++|||+|||+++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++|| .++ ..|+|++|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 34556779999999999999999999999999 9999999998 68999999999999999999999 776 56999999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++.+
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999643
No 87
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.78 E-value=1.5e-18 Score=138.16 Aligned_cols=83 Identities=29% Similarity=0.423 Sum_probs=77.1
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.....++|||+|||+++++++|+++|++||+|++|+|++++ +++++|||||+|++.++|++||+.++. .|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999998 899999999999999999999998875 5999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
++...
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99654
No 88
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=8.6e-19 Score=146.56 Aligned_cols=89 Identities=24% Similarity=0.311 Sum_probs=79.2
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
.+......++|||+|||+++++++|+++|++||+|+.|.|++++.+++++|||||+|.+.++|++||+.++. .|+|+.|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 344456678999999999999999999999999999999999999999999999999999999999999875 5999999
Q ss_pred EEEEcccCCC
Q 023634 94 NCNLACLGVQ 103 (279)
Q Consensus 94 ~V~~a~~~~~ 103 (279)
.|.+++....
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999976543
No 89
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=141.24 Aligned_cols=82 Identities=32% Similarity=0.443 Sum_probs=76.1
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+...++|||+|||+++++++|+++|++||+|++++|++++.++++||||||+|++.++|++||+.++. .|+|++|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999875 599999999
Q ss_pred EEc
Q 023634 96 NLA 98 (279)
Q Consensus 96 ~~a 98 (279)
++|
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 90
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=135.34 Aligned_cols=83 Identities=12% Similarity=0.167 Sum_probs=72.9
Q ss_pred cCCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccC
Q 023634 13 GAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVID 89 (279)
Q Consensus 13 ~~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~ 89 (279)
..........++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+
T Consensus 6 ~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 6 SGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp CCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 334555667799999999999999999999999999999998865 7899999999999999999763 3599
Q ss_pred CeeEEEEEcccC
Q 023634 90 GRRANCNLACLG 101 (279)
Q Consensus 90 Gr~i~V~~a~~~ 101 (279)
|++|.|++++.+
T Consensus 80 Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 80 NQPIYIQYSNHK 91 (101)
T ss_dssp TEECEEEECSCS
T ss_pred CcEEEEEEcCcc
Confidence 999999999644
No 91
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.6e-19 Score=136.31 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=69.9
Q ss_pred CCCCccEEEECCCCc-cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeeE
Q 023634 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~Gr~i 93 (279)
.....++|||+|||+ +++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+||+|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 345678999999999 9999999999999999999999876 5799999999999999999875 24999999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
.|++++..
T Consensus 85 ~V~~a~~~ 92 (102)
T 1x4d_A 85 RVHLSQKY 92 (102)
T ss_dssp EEEEECCC
T ss_pred EEEECCCC
Confidence 99999643
No 92
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=133.29 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=72.4
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
...+...++|||+|||+++++++|+++|++||+| +++++ .+++++|||||+|++.++|++||+.++. .|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 9 STWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 3355678999999999999999999999999987 56666 5799999999999999999999999875 59999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++..
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9999543
No 93
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.7e-18 Score=129.00 Aligned_cols=75 Identities=31% Similarity=0.540 Sum_probs=69.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.+...++|||+|||+++++++|+++|++||+|++|+|+ ||||||+|++.++|++||+.++. +|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45678999999999999999999999999999999987 57999999999999999999875 6999999999
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
+++.
T Consensus 76 ~a~~ 79 (90)
T 2dnq_A 76 ASKN 79 (90)
T ss_dssp CSSC
T ss_pred ECCC
Confidence 9954
No 94
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=134.87 Aligned_cols=81 Identities=22% Similarity=0.242 Sum_probs=71.1
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCe
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGR 91 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~Gr 91 (279)
.+......++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|+
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr 81 (104)
T 1wex_A 8 SHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQ 81 (104)
T ss_dssp SCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSS
T ss_pred CCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 3344556789999999999999999999999999999998864 7899999999999999999874 249999
Q ss_pred eEEEEEcccC
Q 023634 92 RANCNLACLG 101 (279)
Q Consensus 92 ~i~V~~a~~~ 101 (279)
+|.|++++.+
T Consensus 82 ~l~V~~a~~~ 91 (104)
T 1wex_A 82 QAFFNYSTSK 91 (104)
T ss_dssp BCEEEECSSS
T ss_pred EEEEEEccCc
Confidence 9999999643
No 95
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.3e-19 Score=136.75 Aligned_cols=83 Identities=28% Similarity=0.487 Sum_probs=75.4
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
...+...++|||+|||+++++++|+++|++||+|++|+|++|+ +++||||||+|++.++|++||+.++. .|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999986 45899999999999999999999875 59999999
Q ss_pred EEEccc
Q 023634 95 CNLACL 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|++++.
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999854
No 96
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.4e-18 Score=133.36 Aligned_cols=81 Identities=33% Similarity=0.489 Sum_probs=73.1
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+...++|||+|||+++++++|+++|++| .+|++++++.+++++|||||+|++.++|++||+.++. +|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345677999999999999999999999977 4788889988999999999999999999999998874 699999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
++++.
T Consensus 87 ~~a~~ 91 (102)
T 2fc8_A 87 DWAKP 91 (102)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99954
No 97
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=3.8e-18 Score=163.84 Aligned_cols=83 Identities=23% Similarity=0.478 Sum_probs=77.4
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+||++++++++|+++|++||.|+.|+|+.|+.+++++|||||+|.+.++|++||+.|+. +|+|+.|.|+++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4558999999999999999999999999999999999999999999999999999999999999875 599999999999
Q ss_pred ccCC
Q 023634 99 CLGV 102 (279)
Q Consensus 99 ~~~~ 102 (279)
....
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 7543
No 98
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.8e-19 Score=135.21 Aligned_cols=78 Identities=27% Similarity=0.509 Sum_probs=72.3
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcccC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACLG 101 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~~~ 101 (279)
++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|++.+ |++|++.++. .|+|++|+|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 78999999999999999999999999999999999999999999999999999 9999999875 599999999999654
No 99
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=136.46 Aligned_cols=84 Identities=25% Similarity=0.373 Sum_probs=75.2
Q ss_pred CCCCccEEEECCCCccCcHHHHH---HHHHhcCCEEEEEEeecCCCC---CccceEEEEeCCHHHHHHHHHhcCC-ccCC
Q 023634 18 GDTTYTKVFVGGLAWETQKETME---KYFEQFGEILEAVVITDKATG---RSKGYGFVTFREPEAAMKACVDAAP-VIDG 90 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~---~~F~~fG~I~~v~i~~dk~tg---~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G 90 (279)
.....++|||+|||+++++++|+ ++|++||+|++|+|++++.++ +++|||||+|++.++|++||+.++. +|+|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44567899999999999999999 999999999999999998754 5669999999999999999999875 5999
Q ss_pred eeEEEEEcccC
Q 023634 91 RRANCNLACLG 101 (279)
Q Consensus 91 r~i~V~~a~~~ 101 (279)
++|+|++++.+
T Consensus 91 r~l~V~~a~~k 101 (111)
T 2cpi_A 91 RTLKASLGTTK 101 (111)
T ss_dssp EEEEEESCCCC
T ss_pred EEEEEEecccc
Confidence 99999999543
No 100
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=1.7e-19 Score=147.88 Aligned_cols=80 Identities=20% Similarity=0.253 Sum_probs=70.9
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
...+.++|||+|||++++|++|+++|++|| |++|+|++|+. +++||||||+|++.++|++|| .++ .+|++|.|+|.
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~ 118 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELF 118 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEE
Confidence 445678999999999999999999999999 77999999986 999999999999999999999 555 56999999999
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
++..
T Consensus 119 ~a~~ 122 (139)
T 2hgn_A 119 LNST 122 (139)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9853
No 101
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=6.3e-19 Score=142.12 Aligned_cols=81 Identities=25% Similarity=0.292 Sum_probs=74.1
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEE--EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEIL--EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~--~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~ 94 (279)
.+..+.++|||+|||++++|++|+++|++| .|+ +|+|++|+. +++||||||+|++.++|++||+.++.+|+||.|+
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~ 114 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIE 114 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEE
Confidence 344567899999999999999999999999 787 899999987 9999999999999999999999877789999999
Q ss_pred EEEcc
Q 023634 95 CNLAC 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|..+.
T Consensus 115 V~~a~ 119 (126)
T 2hgm_A 115 VFKSS 119 (126)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 99874
No 102
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.1e-19 Score=139.16 Aligned_cols=84 Identities=18% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.....++|||+|||+++++++|+++|++||.|.++.+..+..+++++|||||+|++.++|++||+.++. .|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 445679999999999999999999999999995443333333788999999999999999999999874 5999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 101 ~a~~~ 105 (115)
T 2cpx_A 101 FGKNK 105 (115)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99654
No 103
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3.5e-20 Score=145.97 Aligned_cols=83 Identities=28% Similarity=0.391 Sum_probs=77.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEE--------EEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILE--------AVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI 88 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~--------v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i 88 (279)
++.+.++|||+|||+++++++|+++|++||.|.+ |+|++|+.+++++|||||+|.+.++|++||+.++. .|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567799999999999999999999999999999 99999999999999999999999999999999874 59
Q ss_pred CCeeEEEEEccc
Q 023634 89 DGRRANCNLACL 100 (279)
Q Consensus 89 ~Gr~i~V~~a~~ 100 (279)
+|++|+|++++.
T Consensus 83 ~g~~l~V~~a~~ 94 (116)
T 2lcw_A 83 SGNPIKVSFATR 94 (116)
Confidence 999999999854
No 104
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.2e-18 Score=132.53 Aligned_cols=79 Identities=30% Similarity=0.520 Sum_probs=71.8
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.+...++|||+|||+++++++|+++|++||+|++|+|+++ +|||||+|++.++|++||+.++. +|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 78999999999999999999875 5999999999
Q ss_pred EcccCC
Q 023634 97 LACLGV 102 (279)
Q Consensus 97 ~a~~~~ 102 (279)
+++...
T Consensus 95 ~a~~~~ 100 (109)
T 1x4g_A 95 WGKESP 100 (109)
T ss_dssp CCCCCC
T ss_pred ecCCCC
Confidence 996543
No 105
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=136.77 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC---CccCCeeE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA---PVIDGRRA 93 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~---~~i~Gr~i 93 (279)
......++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++||+.++ .+|+|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 34456789999999999999999999999999999999876 7899999999999999999875 36999999
Q ss_pred EEEEcccCC
Q 023634 94 NCNLACLGV 102 (279)
Q Consensus 94 ~V~~a~~~~ 102 (279)
+|++++.+.
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 999996543
No 106
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.76 E-value=7.2e-19 Score=135.08 Aligned_cols=84 Identities=30% Similarity=0.505 Sum_probs=76.7
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
..+...++|||+|||+++++++|+++|++||.|++|+|++|+ ++++||||||+|++.++|++||+ ....|+|++|.|.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~ 81 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLG 81 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEE
Confidence 445677999999999999999999999999999999999998 89999999999999999999999 5567999999999
Q ss_pred EcccCC
Q 023634 97 LACLGV 102 (279)
Q Consensus 97 ~a~~~~ 102 (279)
++....
T Consensus 82 ~a~~~~ 87 (102)
T 2xs2_A 82 PAIRKQ 87 (102)
T ss_dssp EEEECC
T ss_pred ECCcCc
Confidence 986543
No 107
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.76 E-value=2.1e-18 Score=134.78 Aligned_cols=82 Identities=24% Similarity=0.410 Sum_probs=69.9
Q ss_pred ccCCCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCC
Q 023634 12 AGAGQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG 90 (279)
Q Consensus 12 ~~~~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G 90 (279)
.......+...++|||+|||+++++++|+++|++||+|++|+|+ +|||||+|.+.++|++||+.++. .|+|
T Consensus 21 ~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 21 MHHRQEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp -------CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred cccccCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34445566788999999999999999999999999999999987 68999999999999999999875 5999
Q ss_pred eeEEEEEcccC
Q 023634 91 RRANCNLACLG 101 (279)
Q Consensus 91 r~i~V~~a~~~ 101 (279)
++|+|++++..
T Consensus 93 ~~l~V~~a~~~ 103 (108)
T 2jvo_A 93 QPLEVVYSKLP 103 (108)
T ss_dssp EECEEESCSCC
T ss_pred eEEEEEEecCC
Confidence 99999999654
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.9e-18 Score=126.42 Aligned_cols=79 Identities=29% Similarity=0.448 Sum_probs=71.7
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc-CC-ccCCee
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-AP-VIDGRR 92 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~-~~-~i~Gr~ 92 (279)
.+..+.+.++|||+|||+++++++|+++|++||+|++|+++++ ||||||+|++.++|++||+.+ +. .|+|++
T Consensus 5 ~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 5 SSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 4456678899999999999999999999999999999999874 789999999999999999987 64 599999
Q ss_pred EEEEEcc
Q 023634 93 ANCNLAC 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
|+|++++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999974
No 109
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.5e-19 Score=138.33 Aligned_cols=92 Identities=14% Similarity=0.162 Sum_probs=75.1
Q ss_pred CchhhHHhhccCCCCCCCCccEEEECCCCcc-CcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHH
Q 023634 3 TPVSAQAAAAGAGQFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKAC 81 (279)
Q Consensus 3 ~P~~a~~~~~~~~~~~d~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai 81 (279)
||..+.-.....-.......++|||+|||++ ++|++|+++|++||+|.+|+|++ +||||||+|++.++|++||
T Consensus 6 ~~~~~~~~~~k~~~~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai 79 (112)
T 1x4f_A 6 SGKKPEGKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMV 79 (112)
T ss_dssp SCCCSCCCCCCCCCCSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHH
T ss_pred CCccccCChhhhccccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHH
Confidence 4444333333333344567899999999998 99999999999999999999974 3789999999999999999
Q ss_pred HhcC---CccCCeeEEEEEccc
Q 023634 82 VDAA---PVIDGRRANCNLACL 100 (279)
Q Consensus 82 ~~~~---~~i~Gr~i~V~~a~~ 100 (279)
+.++ .+|+||+|+|++++.
T Consensus 80 ~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 80 DHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp HHHHHSCCCSSSSCCEEEEECS
T ss_pred HHhccCCceECCEEEEEEECcc
Confidence 9874 359999999999954
No 110
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=5.2e-18 Score=129.99 Aligned_cols=75 Identities=28% Similarity=0.447 Sum_probs=69.4
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEcccC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLACLG 101 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~~~ 101 (279)
++|||+|||+++++++|+++|++||+|++|+|+++ ++|||||+|++.++|++||+.++ ..|+|++|+|++++..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999887 68999999999999999999886 5699999999999654
Q ss_pred C
Q 023634 102 V 102 (279)
Q Consensus 102 ~ 102 (279)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 111
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.5e-18 Score=126.78 Aligned_cols=78 Identities=22% Similarity=0.407 Sum_probs=70.1
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
...+...++|||+|||+++++++|+++|++||+|++|+|++ +||||+|++.++|++||+.++. .|+|++|+
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 75 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMH 75 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEE
Confidence 34566789999999999999999999999999999999974 3999999999999999999875 59999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++.+
T Consensus 76 V~~a~~~ 82 (92)
T 2dgt_A 76 VQLSTSR 82 (92)
T ss_dssp EEESSCC
T ss_pred EEEccCC
Confidence 9999543
No 112
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.5e-18 Score=136.32 Aligned_cols=81 Identities=19% Similarity=0.320 Sum_probs=72.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~ 97 (279)
...+.++|||+|||++++|++|+++|++| .|.+|+|++|+. +++||||||+|++.++|++||+....+|+||.|+|..
T Consensus 12 ~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 12 INPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEE
Confidence 33456899999999999999999999999 999999999986 9999999999999999999995434569999999998
Q ss_pred ccc
Q 023634 98 ACL 100 (279)
Q Consensus 98 a~~ 100 (279)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 853
No 113
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.2e-18 Score=133.97 Aligned_cols=82 Identities=17% Similarity=0.391 Sum_probs=74.8
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc-------
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI------- 88 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i------- 88 (279)
..+.+.++|||+|||+++++++|+++|++||+|++|+|++|+ +++++|||||+|.+.++|++||+.++. .|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 345677999999999999999999999999999999999998 899999999999999999999998874 46
Q ss_pred -CCeeEEEEEcc
Q 023634 89 -DGRRANCNLAC 99 (279)
Q Consensus 89 -~Gr~i~V~~a~ 99 (279)
.++.|.|++++
T Consensus 99 ~~~~~l~v~~a~ 110 (114)
T 1x5o_A 99 APTEPLLCKFSG 110 (114)
T ss_dssp CCSSCBEEEECC
T ss_pred CCCCceeEEccC
Confidence 57789999985
No 114
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.75 E-value=1.4e-18 Score=137.90 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=74.4
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~---I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i 93 (279)
.+.+.++|||+|||++++|++|+++|++||. |++|+|++|+. +++||||||+|++.++|++||+ ++ .+|+||.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 4456789999999999999999999999999 89999999987 9999999999999999999999 65 46999999
Q ss_pred EEEEccc
Q 023634 94 NCNLACL 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
+|.++..
T Consensus 91 ~V~~a~~ 97 (118)
T 2db1_A 91 EVFKSHR 97 (118)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9999853
No 115
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=3.9e-18 Score=132.23 Aligned_cols=82 Identities=24% Similarity=0.365 Sum_probs=73.9
Q ss_pred CCCCCccEEEECCCCccC------cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC
Q 023634 17 FGDTTYTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID 89 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~------tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~ 89 (279)
..+...++|||+|||+++ ++++|+++|++||.|.+|+|+ +.++++||||||+|.+.++|++||+.++. .|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345567899999999999 789999999999999999988 46799999999999999999999999875 599
Q ss_pred Ce-eEEEEEccc
Q 023634 90 GR-RANCNLACL 100 (279)
Q Consensus 90 Gr-~i~V~~a~~ 100 (279)
|+ +|+|+++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 999999853
No 116
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=3.5e-19 Score=136.62 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=73.1
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (279)
....++|||+|||+++++++|+++|++||.|.+ +++.++.++++||||||+|++.++|++||+ ++ ..|+|++|+|++
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 446789999999999999999999999999988 777888889999999999999999999999 76 569999999999
Q ss_pred ccc
Q 023634 98 ACL 100 (279)
Q Consensus 98 a~~ 100 (279)
++.
T Consensus 92 a~~ 94 (101)
T 1fj7_A 92 PKG 94 (101)
T ss_dssp CSC
T ss_pred cCC
Confidence 954
No 117
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.75 E-value=1.5e-18 Score=141.62 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=74.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRA 93 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~---I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i 93 (279)
++.+.++|||+|||+++||++|+++|++||. |++|+|++|+. +++||||||+|++.++|++||+ ++ .+|+||.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4456789999999999999999999999999 89999999987 9999999999999999999999 76 46999999
Q ss_pred EEEEccc
Q 023634 94 NCNLACL 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
+|+++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9999853
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.6e-18 Score=128.98 Aligned_cols=77 Identities=17% Similarity=0.378 Sum_probs=67.4
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCC-EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC--ccCCeeEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGE-ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP--VIDGRRAN 94 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~-I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~--~i~Gr~i~ 94 (279)
.+...++|||+|||+++++++|+++|++||+ |..+.+. ++|||||+|++.++|++||+.++. +|+|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 4557789999999999999999999999999 6655552 478999999999999999999875 59999999
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|++++.+
T Consensus 77 v~~a~~~ 83 (93)
T 2cqh_A 77 VDYSVSK 83 (93)
T ss_dssp EEECCCC
T ss_pred EEEccCc
Confidence 9999643
No 119
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8.2e-19 Score=139.92 Aligned_cols=82 Identities=18% Similarity=0.327 Sum_probs=74.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
.+.+.++|||+|||++++|++|+++|++||.|.++.++.++.+++++|||||+|++.++|++||+ ++ .+|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999997777787899999999999999999999999 76 46999999999
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
++..
T Consensus 100 ~a~~ 103 (124)
T 1wel_A 100 PITK 103 (124)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=131.32 Aligned_cols=78 Identities=24% Similarity=0.254 Sum_probs=69.3
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC---ccCCeeE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP---VIDGRRA 93 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~---~i~Gr~i 93 (279)
......++|||+|||++++|++|+++|++||+|++|+++++ ||||||+|++.++|++||+.++. .|.||+|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34456789999999999999999999999999999999853 78999999999999999999853 3899999
Q ss_pred EEEEccc
Q 023634 94 NCNLACL 100 (279)
Q Consensus 94 ~V~~a~~ 100 (279)
.|++++.
T Consensus 90 ~V~~S~~ 96 (100)
T 3r27_A 90 FVNYSTS 96 (100)
T ss_dssp EEEECSC
T ss_pred EEEeccc
Confidence 9999864
No 121
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=125.62 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=69.5
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+...++|||+|||+++++++|+++|++||+|++|+|++ +||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3456779999999999999999999999999999999974 3999999999999999999875 599999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 76 ~~a~~~ 81 (90)
T 2dnp_A 76 ELSTKG 81 (90)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999644
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=5.7e-18 Score=143.01 Aligned_cols=85 Identities=28% Similarity=0.573 Sum_probs=75.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
...++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|++.++|++||+.++..|+|+.|+|+++.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEECC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEecC
Confidence 45589999999999999999999999999999999999999999999999999999999999987678999999999996
Q ss_pred cCCCC
Q 023634 100 LGVQR 104 (279)
Q Consensus 100 ~~~~~ 104 (279)
++.+.
T Consensus 182 ~k~~~ 186 (196)
T 1l3k_A 182 SKQEM 186 (196)
T ss_dssp -----
T ss_pred ChhHh
Confidence 55433
No 123
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=2.4e-18 Score=131.90 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=69.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.+...++|||+|||+++++++|+++|++||+|++|+++ ++||||||+|++.++|++||+.++. +|+|++|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44567899999999999999999999999999999997 3589999999999999999999875 5999999999
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
++++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9853
No 124
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=128.54 Aligned_cols=78 Identities=29% Similarity=0.499 Sum_probs=70.6
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
......++|||+|||+++++++|+++|++||+|++|+++++ ||||||+|++.++|++||+.++. .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34457789999999999999999999999999999999854 78999999999999999999874 599999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
++++.
T Consensus 84 ~~a~~ 88 (99)
T 2cpj_A 84 RFACH 88 (99)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99954
No 125
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.74 E-value=1.4e-18 Score=137.15 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=63.6
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee-----
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR----- 92 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~----- 92 (279)
..+.++|||+|||++++|++|+++|++||+|++|+|++| |||||+|++.++|++||+.|+. +|+|++
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 456789999999999999999999999999999999866 8999999999999999999875 699998
Q ss_pred EEEEEcc
Q 023634 93 ANCNLAC 99 (279)
Q Consensus 93 i~V~~a~ 99 (279)
|+|+.+.
T Consensus 86 i~v~~~~ 92 (115)
T 3beg_B 86 IRVKVDG 92 (115)
T ss_dssp CEEEECC
T ss_pred EEeccCC
Confidence 5666553
No 126
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-17 Score=127.52 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=69.5
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC--CeeEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID--GRRAN 94 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~--Gr~i~ 94 (279)
.....++|||+|||+++++++|+++|++||+|++|+++++ ||||||+|++.++|++||+.++. +|+ |++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 3456689999999999999999999999999999999764 78999999999999999999874 588 99999
Q ss_pred EEEccc
Q 023634 95 CNLACL 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|+++++
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999954
No 127
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=4.9e-18 Score=133.95 Aligned_cols=76 Identities=13% Similarity=0.062 Sum_probs=69.2
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
...++|||+|||++++|++|+++|++|| +|..++|+.+ +++|||||+|++.++|++||+.++. +|+|++|+|++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 4568999999999999999999999999 9999988643 4799999999999999999999975 59999999999
Q ss_pred cc
Q 023634 98 AC 99 (279)
Q Consensus 98 a~ 99 (279)
++
T Consensus 102 a~ 103 (111)
T 2jvr_A 102 DD 103 (111)
T ss_dssp SC
T ss_pred CC
Confidence 85
No 128
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=135.03 Aligned_cols=82 Identities=17% Similarity=0.186 Sum_probs=72.2
Q ss_pred CCCCCccEEEECCCCccCcHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCe
Q 023634 17 FGDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR 91 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr 91 (279)
.+....++|||+||++++++++|+ ++|++||+|++|.+.+ ++++||||||+|++.++|++||+.++. .|.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345567899999999999999876 6999999999988753 578999999999999999999999975 59999
Q ss_pred eEEEEEcccC
Q 023634 92 RANCNLACLG 101 (279)
Q Consensus 92 ~i~V~~a~~~ 101 (279)
.|+|++++..
T Consensus 101 ~l~V~~a~~~ 110 (127)
T 2a3j_A 101 PLVITFSETP 110 (127)
T ss_dssp CCEEEECCCC
T ss_pred EEEEEEccCc
Confidence 9999999654
No 129
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.2e-17 Score=126.55 Aligned_cols=77 Identities=19% Similarity=0.350 Sum_probs=67.8
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~ 97 (279)
....++|||+|||+++++++|+++|++||+|.+| +.++.+++ ||||+|.+.++|++||+ ++ .+|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4466899999999999999999999999999987 66766665 99999999999999999 76 469999999998
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
+..+
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 7543
No 130
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=9.1e-18 Score=141.75 Aligned_cols=86 Identities=34% Similarity=0.541 Sum_probs=78.9
Q ss_pred CCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEE
Q 023634 16 QFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANC 95 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V 95 (279)
+.++...++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+..+..|+|+.|.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v 86 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEP 86 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeee
Confidence 44667889999999999999999999999999999999999999999999999999999999999998667799999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
.++...
T Consensus 87 ~~~~~~ 92 (196)
T 1l3k_A 87 KRAVSR 92 (196)
T ss_dssp EECCC-
T ss_pred ecccCc
Confidence 998543
No 131
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.5e-17 Score=125.86 Aligned_cols=77 Identities=27% Similarity=0.360 Sum_probs=68.7
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhc--CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQF--GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~f--G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
......++|||+|||+++++++|+++|++| |+|.+|+++ ||||||+|.+.++|++||+.++. .|+|++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 999999874 57999999999999999999875 5999999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++..
T Consensus 82 ~v~~a~~~ 89 (99)
T 2cpd_A 82 EVTLAKPV 89 (99)
T ss_dssp EEECCCCC
T ss_pred EEEECCCC
Confidence 99999643
No 132
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=8.7e-18 Score=130.96 Aligned_cols=74 Identities=27% Similarity=0.510 Sum_probs=67.5
Q ss_pred CCCccEEEECCCCcc-CcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 19 d~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
....++|||+|||++ +++++|+++|++||+|++|+| ++|||||+|++.++|++||+.++. .|+|++|+|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345589999999999 999999999999999999988 478999999999999999999875 5999999999
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
+++.
T Consensus 96 ~a~~ 99 (110)
T 1wf1_A 96 MAGE 99 (110)
T ss_dssp ESCC
T ss_pred ECCC
Confidence 9953
No 133
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=127.72 Aligned_cols=79 Identities=15% Similarity=0.248 Sum_probs=70.0
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.....++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.++. .|+|++|+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 445678999999999999999999999999997 677654 5789999999999999999999875 5999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++.+
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 99643
No 134
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.1e-18 Score=126.37 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=65.7
Q ss_pred ccEEEECCCCccC------cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCe-eE
Q 023634 22 YTKVFVGGLAWET------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR-RA 93 (279)
Q Consensus 22 ~~~lfVgnLp~~~------tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr-~i 93 (279)
.++|||+|||+++ ++++|+++|++||+|.+|+|+ +.++++||||||+|++.++|++||+.++. .|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 789999999999999999987 45899999999999999999999999875 59999 88
Q ss_pred EE
Q 023634 94 NC 95 (279)
Q Consensus 94 ~V 95 (279)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 135
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.6e-18 Score=137.89 Aligned_cols=80 Identities=23% Similarity=0.252 Sum_probs=72.4
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCE----EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEI----LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I----~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~ 94 (279)
..+.++|||+|||++++|++|+++|++||.| .+|+|++|+ ++++||||||+|++.++|++||+..+.+|++|.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3456899999999999999999999999975 689999995 89999999999999999999999855669999999
Q ss_pred EEEcc
Q 023634 95 CNLAC 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|..+.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 99875
No 136
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=1.9e-18 Score=134.41 Aligned_cols=82 Identities=12% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCC---EEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCee
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGE---ILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRR 92 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~---I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~ 92 (279)
.+..+.++|||+|||+++++++|+++|++||. |.+|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|+||.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567899999999999999999999999998 89999999987 9999999999999999999999 65 5699999
Q ss_pred EEEEEccc
Q 023634 93 ANCNLACL 100 (279)
Q Consensus 93 i~V~~a~~ 100 (279)
|+|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99999864
No 137
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=1.1e-17 Score=144.76 Aligned_cols=81 Identities=27% Similarity=0.373 Sum_probs=74.9
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++. .+.|+.|+|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4568999999999999999999999999999999999999999999999999999999999999875 599999999988
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
..
T Consensus 93 ~~ 94 (213)
T 4f02_A 93 QR 94 (213)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 138
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=1.1e-17 Score=126.35 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=67.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
....|||+||++++||++|+++|.+||+|.++++.. +||||||+|.++++|++||+.||. +|.||.|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 357899999999999999999999999999999865 589999999999999999999986 5999999999984
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=8.8e-18 Score=127.94 Aligned_cols=76 Identities=18% Similarity=0.422 Sum_probs=67.5
Q ss_pred CCCCccEEEECCCCc-cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 18 GDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
...+.++|||+|||+ ++++++|+++|++||+|++|+|. ||||||+|++.++|++||+.++. .|+|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345678999999998 99999999999999999999984 68999999999999999999875 599999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 78 ~~a~~~ 83 (96)
T 2kvi_A 78 EVSSSN 83 (96)
T ss_dssp EEEECC
T ss_pred EEcCcC
Confidence 999654
No 140
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=6.8e-18 Score=132.72 Aligned_cols=80 Identities=25% Similarity=0.394 Sum_probs=71.0
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCC---CCccceEEEEeCCHHHHHHHHHhcCCccCCeeEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKAT---GRSKGYGFVTFREPEAAMKACVDAAPVIDGRRAN 94 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~t---g~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~ 94 (279)
+....++|||+|||+++++++|+++|++||+|+ ++++.++.+ +++||||||+|++.++|++||+.++ .++|+.|.
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~ 81 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYL 81 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEE
Confidence 345678999999999999999999999999999 888888877 7999999999999999999999984 48888887
Q ss_pred EEEcc
Q 023634 95 CNLAC 99 (279)
Q Consensus 95 V~~a~ 99 (279)
|..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 77553
No 141
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7e-17 Score=123.01 Aligned_cols=77 Identities=18% Similarity=0.282 Sum_probs=68.3
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
......++|||+|| ++++++|+++|++||+|++|+|. ++||||||+|++.++|++||+.++. .|+|++|+|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v 81 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 81 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34456789999996 89999999999999999999984 4689999999999999999999875 599999999
Q ss_pred EEcccC
Q 023634 96 NLACLG 101 (279)
Q Consensus 96 ~~a~~~ 101 (279)
++++..
T Consensus 82 ~~a~~~ 87 (97)
T 1x5p_A 82 NIARKQ 87 (97)
T ss_dssp ECCSSC
T ss_pred EECCCC
Confidence 999644
No 142
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.1e-17 Score=140.29 Aligned_cols=82 Identities=28% Similarity=0.402 Sum_probs=76.1
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
....++|||+|||+++++++|+++|++||+|++|.|+.++ +++++|||||+|++.++|++||+.++. .|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 899999999999999999999999875 59999999999
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
+...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8643
No 143
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.72 E-value=3.8e-17 Score=125.04 Aligned_cols=76 Identities=20% Similarity=0.463 Sum_probs=68.0
Q ss_pred CCCCCccEEEECCCCc-cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEE
Q 023634 17 FGDTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRAN 94 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~ 94 (279)
......++|||+|||+ ++++++|+++|++||+|.+|+|. +|||||+|++.++|++||+.++. .|+|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456779999999998 99999999999999999999883 78999999999999999999875 59999999
Q ss_pred EEEccc
Q 023634 95 CNLACL 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|++++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 999854
No 144
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-17 Score=126.85 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=70.3
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
..+...++|||+|||+++++++|+++|++||+|..+ +.+++++|||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345677999999999999999999999999988766 34688999999999999999999999875 599999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
++++.
T Consensus 86 ~~a~~ 90 (96)
T 1fjc_A 86 YYTGE 90 (96)
T ss_dssp EECSS
T ss_pred EEcCC
Confidence 99854
No 145
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.2e-17 Score=126.82 Aligned_cols=81 Identities=20% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCCccEEEECCCCccCcHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
++...++|||+|||+++++++|+ ++|++||.|.+|++++ +++++|||||+|.+.++|++|++.++. .|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 44567899999999999999999 9999999999998874 477899999999999999999999875 599999
Q ss_pred EEEEEcccC
Q 023634 93 ANCNLACLG 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|++++..
T Consensus 81 l~v~~a~~~ 89 (97)
T 1nu4_A 81 MRIQYAKTD 89 (97)
T ss_dssp CEEEECSSC
T ss_pred EEEEEccCC
Confidence 999999654
No 146
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=3.3e-17 Score=128.37 Aligned_cols=80 Identities=15% Similarity=0.206 Sum_probs=72.3
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
....++|||+|||+++++++|+++|++||.|.+|.|+++ ++++|||||+|.+.++|++||+.++. .|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999876 45699999999999999999998874 59999999999
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
++..
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9654
No 147
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=2.9e-17 Score=128.79 Aligned_cols=78 Identities=22% Similarity=0.204 Sum_probs=70.1
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
+...++|||+|||+++++++|+++|++||.|.+|.|++ +||||||+|.+.++|++||+.++. .|+|+.|.|++
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34568999999999999999999999999999998864 478999999999999999999875 59999999999
Q ss_pred cccCC
Q 023634 98 ACLGV 102 (279)
Q Consensus 98 a~~~~ 102 (279)
++...
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97543
No 148
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.70 E-value=9.9e-17 Score=134.64 Aligned_cols=81 Identities=16% Similarity=0.317 Sum_probs=71.5
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCC--eeE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG--RRA 93 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G--r~i 93 (279)
....+..+|||+||+++++|++|+++|++||+|++|+|..++ ++|||||+|++.++|++|++.|+. +|.+ ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~----~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN----NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS----SCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 345677899999999999999999999999999999987542 578999999999999999999985 4855 999
Q ss_pred EEEEcccC
Q 023634 94 NCNLACLG 101 (279)
Q Consensus 94 ~V~~a~~~ 101 (279)
+|++++.+
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 99999764
No 149
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1e-17 Score=125.27 Aligned_cols=76 Identities=21% Similarity=0.458 Sum_probs=65.4
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEcc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLAC 99 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~ 99 (279)
...++|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|++.++|++++.. ...+++++|+|++++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45699999999999999999999999999999999865 689999999999999865433 234799999999985
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
++
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 150
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=5.3e-17 Score=133.56 Aligned_cols=81 Identities=23% Similarity=0.332 Sum_probs=75.6
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..++|||+|||+++++++|+++|++||+|++|++++++.+++++|||||+|.+.++|++|++.++. .|+|++|+|++++
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 358999999999999999999999999999999999999999999999999999999999998875 5999999999986
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
..
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 151
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=6e-17 Score=132.69 Aligned_cols=79 Identities=29% Similarity=0.425 Sum_probs=74.7
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEccc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~~ 100 (279)
.++|||+|||+++++++|+++|++||+|.++++++++.+++++|||||+|.+.++|++|++.++. .|.|++|+|+++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 48999999999999999999999999999999999999999999999999999999999998875 59999999999864
No 152
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.70 E-value=3.9e-17 Score=134.05 Aligned_cols=79 Identities=25% Similarity=0.387 Sum_probs=72.1
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
......++|||+|||+++++++|+++|++||+|++|+|+++ +||||||+|.+.++|++||+.++. .|+|++|+|
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34567799999999999999999999999999999999887 589999999999999999998874 599999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
++++.
T Consensus 143 ~~a~~ 147 (150)
T 2i2y_A 143 ELSNG 147 (150)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99954
No 153
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.70 E-value=2.5e-17 Score=124.28 Aligned_cols=78 Identities=24% Similarity=0.441 Sum_probs=63.0
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNL 97 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~ 97 (279)
.+...++|||+|||++++|++|+++|++||+|++|+|+++ +||||||+|++.++|+++. .....+++++|+|++
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~-~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLC-GEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHT-TCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHc-CCCcccCCEEEEEEE
Confidence 4567789999999999999999999999999999999875 6999999999999998432 222247799999999
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
+.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8654
No 154
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.70 E-value=8.9e-17 Score=131.55 Aligned_cols=82 Identities=32% Similarity=0.494 Sum_probs=76.8
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.....++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++||+.++. .|+|++|+|+
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 162 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 162 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEE
Confidence 445678999999999999999999999999999999999999999999999999999999999999874 5999999999
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
+++
T Consensus 163 ~a~ 165 (166)
T 3md3_A 163 WAA 165 (166)
T ss_dssp ESC
T ss_pred ecC
Confidence 984
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=7.3e-17 Score=138.19 Aligned_cols=82 Identities=22% Similarity=0.490 Sum_probs=76.6
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|++|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 3458999999999999999999999999999999999999999999999999999999999999874 699999999999
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
+..
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 654
No 156
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=136.08 Aligned_cols=87 Identities=22% Similarity=0.312 Sum_probs=72.3
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEE--E---eecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCe
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAV--V---ITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR 91 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~--i---~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr 91 (279)
.....++|||+|||+++++++|+++|++||.|..+. + ++...+++++|||||+|.+.++|++||+.++. .|+|+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 345678999999999999999999999999987741 1 11123688999999999999999999999875 59999
Q ss_pred eEEEEEcccCCCC
Q 023634 92 RANCNLACLGVQR 104 (279)
Q Consensus 92 ~i~V~~a~~~~~~ 104 (279)
.|+|++++....+
T Consensus 121 ~l~V~~a~~~~~~ 133 (143)
T 3egn_A 121 PMVVQFARSARPK 133 (143)
T ss_dssp ECEEEECCCSCC-
T ss_pred EEEEEECCCCCCc
Confidence 9999999765433
No 157
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=6.7e-17 Score=122.52 Aligned_cols=79 Identities=16% Similarity=0.111 Sum_probs=70.3
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEE-EEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v-~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
....++|||+|||+++++++|+++|++||+|++| .|++++.+++ |||+|.+.++|++||+.++. .|+|++|+|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456899999999999999999999999999999 5888876544 99999999999999998874 6999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
++++.
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99654
No 158
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=4.8e-17 Score=121.87 Aligned_cols=74 Identities=18% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||++++|++|+++|++| +|++++|. ++||||||+|++.++|++||+.++. +|+|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999884 5789999999999999999999875 599999999998
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 159
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4e-17 Score=131.57 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=69.3
Q ss_pred cEEEECCC----CccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCC----HHH----HHHHHH--hcCC-c
Q 023634 23 TKVFVGGL----AWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE----PEA----AMKACV--DAAP-V 87 (279)
Q Consensus 23 ~~lfVgnL----p~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~----~e~----A~~Ai~--~~~~-~ 87 (279)
++|||+|| ++.++|++|+++|++||+|.+|+++.|+.|++++|||||+|.| .++ |.+||+ .++. .
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 9999999999999999999999999999999999999999996 333 889988 5665 5
Q ss_pred cCCeeEEEEEcc
Q 023634 88 IDGRRANCNLAC 99 (279)
Q Consensus 88 i~Gr~i~V~~a~ 99 (279)
|+|++|+|++.+
T Consensus 83 I~Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IMGFKFEVILNK 94 (136)
T ss_dssp ETTEEEEEEECC
T ss_pred ecCcEEEEEECc
Confidence 999999999875
No 160
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.68 E-value=1.3e-16 Score=134.89 Aligned_cols=83 Identities=23% Similarity=0.414 Sum_probs=77.4
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNL 97 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~ 97 (279)
....++|||+|||+++++++|+++|++||.|++|++++++.+++++|||||+|.+.++|++||+.++. .|+|++|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 35679999999999999999999999999999999999998999999999999999999999999875 59999999999
Q ss_pred cccC
Q 023634 98 ACLG 101 (279)
Q Consensus 98 a~~~ 101 (279)
++++
T Consensus 191 a~~~ 194 (198)
T 2yh0_A 191 ASVG 194 (198)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9654
No 161
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.6e-16 Score=131.31 Aligned_cols=79 Identities=23% Similarity=0.391 Sum_probs=74.8
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||+++++++|+++|++||+|+++++++++.+++++|||||+|.+.++|++|++.++. .|+|++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 3468999999999999999999999999999999999998999999999999999999999999875 599999999987
No 162
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=9.3e-17 Score=132.15 Aligned_cols=79 Identities=30% Similarity=0.727 Sum_probs=73.6
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEccc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (279)
+.++|||+|||+++++++|+++|++||+|.+|+|++++.+++++|||||+|.+.++|++||+. ...|+|+.|.|.++..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT-QHILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS-CCEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc-ccccCCeEcccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999996 4579999999988753
No 163
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=1.8e-16 Score=136.24 Aligned_cols=81 Identities=16% Similarity=0.163 Sum_probs=74.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEccc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLACL 100 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a~~ 100 (279)
..++|||+|||+++++++|+++|++||+|.+|+|++++ ++++||||||+|++.++|++||+.++.+|+|+.|+|.+++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 45899999999999999999999999999999999987 48999999999999999999999888899999999999865
Q ss_pred CC
Q 023634 101 GV 102 (279)
Q Consensus 101 ~~ 102 (279)
-.
T Consensus 187 y~ 188 (193)
T 2voo_A 187 YF 188 (193)
T ss_dssp C-
T ss_pred HH
Confidence 43
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.5e-16 Score=124.78 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=67.4
Q ss_pred CCCCccEEEE--CCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc-----C
Q 023634 18 GDTTYTKVFV--GGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI-----D 89 (279)
Q Consensus 18 ~d~~~~~lfV--gnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i-----~ 89 (279)
.+...++||| +||+++++|++|+++|++||+|++|+|+.+ ||||||+|++.++|++|++.|+. +| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4455689999 789999999999999999999999988643 78999999999999999999975 46 6
Q ss_pred CeeEEEEEccc
Q 023634 90 GRRANCNLACL 100 (279)
Q Consensus 90 Gr~i~V~~a~~ 100 (279)
++.|.|.+++.
T Consensus 95 g~~l~v~~a~~ 105 (114)
T 2cq2_A 95 KITLYLNFVEK 105 (114)
T ss_dssp EEECEEEEESC
T ss_pred CcEEEEEeccc
Confidence 88999999853
No 165
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.66 E-value=7.8e-17 Score=132.62 Aligned_cols=79 Identities=32% Similarity=0.621 Sum_probs=73.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~~a~ 99 (279)
..++|||+|||+++++++|+++|++||+|++++++.|+.+++++|||||+|.+.++|++|++ ++ ..|+|++|+|++++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999999999999999999999999999998 55 46999999999996
Q ss_pred c
Q 023634 100 L 100 (279)
Q Consensus 100 ~ 100 (279)
+
T Consensus 165 p 165 (167)
T 2cjk_A 165 P 165 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 166
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=1.9e-16 Score=135.53 Aligned_cols=81 Identities=27% Similarity=0.461 Sum_probs=72.3
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
...++|||+|||+++++++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++. .|+|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 3568999999999999999999999999999999999999999999999999999999999998864 599999999877
Q ss_pred cc
Q 023634 99 CL 100 (279)
Q Consensus 99 ~~ 100 (279)
..
T Consensus 106 ~~ 107 (216)
T 2qfj_A 106 SN 107 (216)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=1.4e-16 Score=137.90 Aligned_cols=79 Identities=28% Similarity=0.436 Sum_probs=72.6
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..++|||+||++++++++|+++|++||+|++|+|++|+ +.+||||||+|.+.++|++||+.|+. +|+|++|+|++++
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 45799999999999999999999874 6999999999996
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
.+
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 168
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.65 E-value=3.9e-16 Score=127.67 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=71.0
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEccc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~~ 100 (279)
++|||+|||+++++++|+++|++||+|.+|+|++++. ++++|||||+|.+.++|++|++.++. .|.|+.|+|+++..
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~ 78 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQ 78 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCC
Confidence 6899999999999999999999999999999999974 78999999999999999999988875 59999999999854
No 169
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=9.4e-16 Score=124.10 Aligned_cols=80 Identities=16% Similarity=0.360 Sum_probs=70.1
Q ss_pred CCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHhcCC-ccCC--ee
Q 023634 17 FGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACVDAAP-VIDG--RR 92 (279)
Q Consensus 17 ~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~-aFV~F~~~e~A~~Ai~~~~~-~i~G--r~ 92 (279)
....+..+|||+||++.+|+++|+++|++||+|++|+|+.+ .||| |||+|++.++|++||+.|+. .|.+ ++
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 34467789999999999999999999999999999988764 3688 99999999999999999985 5887 89
Q ss_pred EEEEEcccC
Q 023634 93 ANCNLACLG 101 (279)
Q Consensus 93 i~V~~a~~~ 101 (279)
|+|++++..
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999999754
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.65 E-value=5e-16 Score=115.29 Aligned_cols=72 Identities=19% Similarity=0.433 Sum_probs=65.0
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhc----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP- 86 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~- 86 (279)
+.+.++|||+|||+++++++|+++|++| | +|.++++.++ ||||||+|.+.++|++|| .++.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3467999999999999999999999999 8 9999998765 789999999999999999 8764
Q ss_pred ccCCeeEEEEE
Q 023634 87 VIDGRRANCNL 97 (279)
Q Consensus 87 ~i~Gr~i~V~~ 97 (279)
.|+|++|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 59999999873
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=7.5e-16 Score=126.61 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=74.4
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCC--eeEEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDG--RRANC 95 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G--r~i~V 95 (279)
....++|||+|||.++++++|+++|++||+|+++++++++.+++++|||||+|.+.++|++|++.++. .|+| ++|+|
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V 165 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSV 165 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEE
Confidence 45678999999999999999999999999999999999998999999999999999999999999875 5877 99999
Q ss_pred EEc
Q 023634 96 NLA 98 (279)
Q Consensus 96 ~~a 98 (279)
++|
T Consensus 166 ~~A 168 (168)
T 1b7f_A 166 RLA 168 (168)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 172
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.64 E-value=6.8e-16 Score=127.52 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=71.4
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCC--CccceEEEEeCCHHHHHHHHHhcCC-ccC---CeeEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATG--RSKGYGFVTFREPEAAMKACVDAAP-VID---GRRAN 94 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg--~skG~aFV~F~~~e~A~~Ai~~~~~-~i~---Gr~i~ 94 (279)
+.++|||+|||+++++++|+++|++||+|++|+|++++.++ +++|||||+|.+.++|++||+.++. .+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999999887 8999999999999999999999875 343 56777
Q ss_pred EEEccc
Q 023634 95 CNLACL 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
+..+..
T Consensus 82 ~~~~~~ 87 (175)
T 3nmr_A 82 MKPADS 87 (175)
T ss_dssp EEECGG
T ss_pred Eccccc
Confidence 777654
No 173
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=5.7e-16 Score=123.49 Aligned_cols=76 Identities=18% Similarity=0.300 Sum_probs=67.8
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.....++|||+|| ++++++|+++|++||+|++|+|. ++||||||+|++.++|++||+.++. .|+|++|+|+
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4456789999996 69999999999999999999986 4689999999999999999999874 5999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 107 ~a~~~ 111 (121)
T 2bz2_A 107 IARKQ 111 (121)
T ss_dssp ECCSS
T ss_pred EeCCC
Confidence 99654
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1.1e-15 Score=125.01 Aligned_cols=80 Identities=25% Similarity=0.458 Sum_probs=72.9
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee--EEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR--ANC 95 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~--i~V 95 (279)
....++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++|++.++. .|+|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 34568999999999999999999999999999999999998999999999999999999999999875 599865 777
Q ss_pred EEc
Q 023634 96 NLA 98 (279)
Q Consensus 96 ~~a 98 (279)
++|
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 765
No 175
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=2.6e-15 Score=120.61 Aligned_cols=77 Identities=13% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccce-EEEEeCCHHHHHHHHHhcCC-ccCC--eeEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGY-GFVTFREPEAAMKACVDAAP-VIDG--RRAN 94 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~-aFV~F~~~e~A~~Ai~~~~~-~i~G--r~i~ 94 (279)
.....+|||+||++.+++++|+++|++||+|++|+|+. + +|| |||+|++.++|++|++.|+. +|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~-~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK-R-----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE-S-----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C-----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 34566789999999999999999999999999999865 2 386 99999999999999999975 5877 6899
Q ss_pred EEEcccC
Q 023634 95 CNLACLG 101 (279)
Q Consensus 95 V~~a~~~ 101 (279)
|+++++.
T Consensus 96 V~~Ak~~ 102 (124)
T 2e5i_A 96 IEYARPT 102 (124)
T ss_dssp EECCSCS
T ss_pred EEEecCC
Confidence 9999654
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.3e-15 Score=125.78 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=71.8
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC---CeeEE
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID---GRRAN 94 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~---Gr~i~ 94 (279)
....++|||+|||+++++++|+++|++||.|+++++++++ +++++|||||+|.+.++|++||+.++. .+. +++|+
T Consensus 92 ~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~ 170 (175)
T 3nmr_A 92 AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMV 170 (175)
T ss_dssp CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCE
T ss_pred cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeE
Confidence 3467899999999999999999999999999999999996 589999999999999999999999974 344 49999
Q ss_pred EEEc
Q 023634 95 CNLA 98 (279)
Q Consensus 95 V~~a 98 (279)
|++|
T Consensus 171 V~~a 174 (175)
T 3nmr_A 171 VKFA 174 (175)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 177
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.62 E-value=1.3e-15 Score=131.85 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=69.6
Q ss_pred CccEEEECCCC-ccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 21 TYTKVFVGGLA-WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 21 ~~~~lfVgnLp-~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
+.++|||+||+ +++++++|+++|++||+|.+|+|++++ ||||||+|++.++|++||+.|+. .|.|+.|+|+++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK-----PGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS-----TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46899999999 899999999999999999999998763 79999999999999999999975 599999999998
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
+..
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 643
No 178
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=1.7e-15 Score=135.59 Aligned_cols=82 Identities=21% Similarity=0.333 Sum_probs=73.9
Q ss_pred CCCCccEEEECCCCccCcHHHHH----HHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 18 GDTTYTKVFVGGLAWETQKETME----KYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~----~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
++...++|||+|||+++++++|+ ++|++||+|++|+|++ ++++||||||+|.+.++|++||+.++. .|.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678999999999999999977 8999999999999876 678999999999999999999999875 599999
Q ss_pred EEEEEcccCC
Q 023634 93 ANCNLACLGV 102 (279)
Q Consensus 93 i~V~~a~~~~ 102 (279)
|+|++++...
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999986543
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.5e-15 Score=113.27 Aligned_cols=71 Identities=17% Similarity=0.238 Sum_probs=62.3
Q ss_pred cEEEECCCCccCcHHH----HHHHHHhc-CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 23 TKVFVGGLAWETQKET----MEKYFEQF-GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~----L~~~F~~f-G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
+.|||+|||+++++++ |+++|++| |+|.+| ++ |+|||+|.+.++|++|++.|+. .|.||.|+|+
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEEEE
Confidence 3499999999999988 55899999 599998 23 9999999999999999999975 5999999999
Q ss_pred EcccCCC
Q 023634 97 LACLGVQ 103 (279)
Q Consensus 97 ~a~~~~~ 103 (279)
+++.+.+
T Consensus 80 ~A~~~sd 86 (96)
T 2diu_A 80 FTPKNRE 86 (96)
T ss_dssp SSCCSCC
T ss_pred ecCCCcc
Confidence 9976544
No 180
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.59 E-value=2.1e-15 Score=133.97 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCCccEEEECCCCccC---------cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc
Q 023634 19 DTTYTKVFVGGLAWET---------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI 88 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~---------tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i 88 (279)
+.+.++|||+||+.++ +|++|+++|++||+|++|+|+.+ ||||||+|.++++|++|++.|+. .|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 5678999999999998 79999999999999999999864 79999999999999999999974 47
Q ss_pred ------------CCeeEEEEEcccC
Q 023634 89 ------------DGRRANCNLACLG 101 (279)
Q Consensus 89 ------------~Gr~i~V~~a~~~ 101 (279)
+|+.|.|+||+..
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC--
T ss_pred eccccccccccCCCCEEEEEEccCC
Confidence 8999999999654
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=6.6e-15 Score=114.70 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=70.8
Q ss_pred CCccEEEECCCCc-----cCcHHHHHHHHHhcCCEEEEEEeecCCC-CCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 20 TTYTKVFVGGLAW-----ETQKETMEKYFEQFGEILEAVVITDKAT-GRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 20 ~~~~~lfVgnLp~-----~~tee~L~~~F~~fG~I~~v~i~~dk~t-g~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
...+.|+|.||-. +-++++|+++|++||+|++|+|++++.+ ++++||+||+|++.++|++|++.|+. .++||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568999999962 2368999999999999999999998764 68999999999999999999999975 599999
Q ss_pred EEEEEccc
Q 023634 93 ANCNLACL 100 (279)
Q Consensus 93 i~V~~a~~ 100 (279)
|.|+++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 182
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.58 E-value=4.1e-15 Score=123.51 Aligned_cols=78 Identities=21% Similarity=0.310 Sum_probs=70.1
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.+...++|||+|||+++++++|+++|++||+|..+ ..+++++|||||+|.+.++|++||+.++. .|+|++|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567899999999999999999999999988766 45789999999999999999999999874 5999999999
Q ss_pred Eccc
Q 023634 97 LACL 100 (279)
Q Consensus 97 ~a~~ 100 (279)
++++
T Consensus 170 ~a~~ 173 (175)
T 1fje_B 170 YTGE 173 (175)
T ss_dssp ECSS
T ss_pred ecCC
Confidence 9954
No 183
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.57 E-value=9.7e-15 Score=127.60 Aligned_cols=78 Identities=14% Similarity=0.207 Sum_probs=71.3
Q ss_pred CCCccEEEECCCCc-cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 19 DTTYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 19 d~~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
....++|||+|||+ ++++++|+++|++||+|++|+|++++ +|||||+|.+.++|++||+.++. .|+|+.|+|+
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 35678999999999 99999999999999999999999885 78999999999999999998864 6999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98644
No 184
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.3e-14 Score=129.81 Aligned_cols=77 Identities=19% Similarity=0.217 Sum_probs=70.3
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC-CeeEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID-GRRANC 95 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~-Gr~i~V 95 (279)
.....++|||+||++++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++. .|+ |++|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999999764 68999999999999999999975 588 999999
Q ss_pred EEcc
Q 023634 96 NLAC 99 (279)
Q Consensus 96 ~~a~ 99 (279)
++++
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9984
No 185
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=1.9e-14 Score=128.81 Aligned_cols=81 Identities=23% Similarity=0.375 Sum_probs=75.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEcc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLAC 99 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~ 99 (279)
..++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.++. .|+|+.|.|+++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 457999999999999999999999999999999999999999999999999999999999998874 5999999999986
Q ss_pred cC
Q 023634 100 LG 101 (279)
Q Consensus 100 ~~ 101 (279)
..
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 53
No 186
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.55 E-value=1.3e-15 Score=126.62 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=71.5
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~Gr~i~V~ 96 (279)
+....++|||+|||+++++++|+++|++||.|.. .++.+..++++||||||+|.+.++|++||+ ++ ..|.|+.|+|+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 4567899999999999999999999999998877 445566678999999999999999999996 65 56999999999
Q ss_pred EcccC
Q 023634 97 LACLG 101 (279)
Q Consensus 97 ~a~~~ 101 (279)
+++..
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98643
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.55 E-value=9.4e-15 Score=131.37 Aligned_cols=81 Identities=17% Similarity=0.281 Sum_probs=73.2
Q ss_pred CCCccEEEECCCCcc-CcHHHHHHHHHhcCCEEEEEEeecCC-CCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 19 DTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKA-TGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 19 d~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~-tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
....++|||+|||++ +++++|+++|++||.|++|+|++++. |++++|||||+|.+.++|++|| .++. .|+|++|+|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V 285 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISV 285 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEE
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEE
Confidence 345689999999999 99999999999999999999999886 6999999999999999999999 8875 599999999
Q ss_pred EEccc
Q 023634 96 NLACL 100 (279)
Q Consensus 96 ~~a~~ 100 (279)
.++++
T Consensus 286 ~~a~~ 290 (292)
T 2ghp_A 286 SLADK 290 (292)
T ss_dssp EECCC
T ss_pred EEecC
Confidence 99954
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=1.2e-14 Score=130.19 Aligned_cols=84 Identities=13% Similarity=0.139 Sum_probs=76.4
Q ss_pred CCCCccEEEECCCCccC-cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEE
Q 023634 18 GDTTYTKVFVGGLAWET-QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANC 95 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~-tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V 95 (279)
.....++|||+|||+++ ++++|+++|++||.|++++|++++ +++++|+|||+|.+.++|++||+.++. .|+|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999999987 799999999999999999999999875 599999999
Q ss_pred EEcccCC
Q 023634 96 NLACLGV 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
+++++..
T Consensus 259 ~~a~~~~ 265 (284)
T 3smz_A 259 SFCAPGP 265 (284)
T ss_dssp EECCSSS
T ss_pred EEecCCC
Confidence 9996543
No 189
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=6.1e-14 Score=109.71 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=67.5
Q ss_pred CCCCccEEEECCCCccCc-----------HHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 023634 18 GDTTYTKVFVGGLAWETQ-----------KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~t-----------ee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 86 (279)
.....++|+|.||-...+ +++|+++|++||+|++|.| .|+ .++|||||+|.+.++|++||+.++.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 445678999999944332 6899999999999999965 554 3799999999999999999999975
Q ss_pred -ccCCeeEEEEEcccC
Q 023634 87 -VIDGRRANCNLACLG 101 (279)
Q Consensus 87 -~i~Gr~i~V~~a~~~ 101 (279)
.|+||+|+|+++...
T Consensus 87 ~~~~gr~l~v~~a~~~ 102 (112)
T 2dit_A 87 RWFGGRQITAQAWDGT 102 (112)
T ss_dssp CEETTEECEEEECCSC
T ss_pred CEECCcEEEEEEeCCC
Confidence 599999999998654
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.53 E-value=1.3e-14 Score=123.13 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=69.7
Q ss_pred CccEEEECCCCc-cCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 21 TYTKVFVGGLAW-ETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 21 ~~~~lfVgnLp~-~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
..++|||+|||+ ++++++|+++|++||.|.+|+|++++ +|||||+|.+.++|++||+.++. .|+|+.|+|+++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 358999999999 99999999999999999999998875 78999999999999999998865 599999999998
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
+..
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 654
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.9e-13 Score=105.60 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=63.9
Q ss_pred CCCccEEEECCCC-------ccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCe
Q 023634 19 DTTYTKVFVGGLA-------WETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGR 91 (279)
Q Consensus 19 d~~~~~lfVgnLp-------~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr 91 (279)
+....+|-|.-.. .+++|++|+++|++||+|++|+|+ +++||||||+|++.++|++||+.++ .+.++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCC
Confidence 3345677776443 458999999999999999999997 3679999999999999999999854 47899
Q ss_pred eEEEEEcccC
Q 023634 92 RANCNLACLG 101 (279)
Q Consensus 92 ~i~V~~a~~~ 101 (279)
.|+|++++..
T Consensus 81 ~l~V~~a~~~ 90 (100)
T 2d9o_A 81 PLKISWLEGQ 90 (100)
T ss_dssp BCEEECSSCC
T ss_pred eEEEEEccCC
Confidence 9999998644
No 192
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=1.8e-14 Score=111.92 Aligned_cols=71 Identities=27% Similarity=0.416 Sum_probs=63.0
Q ss_pred ECCCCccCcHHHHHHHH------------HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeE
Q 023634 27 VGGLAWETQKETMEKYF------------EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRA 93 (279)
Q Consensus 27 VgnLp~~~tee~L~~~F------------~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i 93 (279)
+.||++++++++|+++| ++||+|++|+|++++. +++||||||+|++.++|++|++.++. .++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67888888888777666 9999999999998874 78999999999999999999999975 5999999
Q ss_pred EEEEc
Q 023634 94 NCNLA 98 (279)
Q Consensus 94 ~V~~a 98 (279)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=5.9e-14 Score=125.06 Aligned_cols=81 Identities=28% Similarity=0.292 Sum_probs=72.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc-CCc-cC---CeeEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-APV-ID---GRRANC 95 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~-~~~-i~---Gr~i~V 95 (279)
..++|||+|||+++++++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|.+||+.+ +.. +. ++.|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 3579999999999999999999999999999999999 48999999999999999999999998 443 33 999999
Q ss_pred EEcccCC
Q 023634 96 NLACLGV 102 (279)
Q Consensus 96 ~~a~~~~ 102 (279)
+++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9986543
No 194
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.49 E-value=9e-14 Score=108.17 Aligned_cols=81 Identities=12% Similarity=0.012 Sum_probs=69.5
Q ss_pred CCccEEEECCC--CccCc--------HHHHHHHHHhcCCEEEEEEeecCCC--CCccceEEEEeCCHHHHHHHHHhcCC-
Q 023634 20 TTYTKVFVGGL--AWETQ--------KETMEKYFEQFGEILEAVVITDKAT--GRSKGYGFVTFREPEAAMKACVDAAP- 86 (279)
Q Consensus 20 ~~~~~lfVgnL--p~~~t--------ee~L~~~F~~fG~I~~v~i~~dk~t--g~skG~aFV~F~~~e~A~~Ai~~~~~- 86 (279)
...+.|.|.|+ +.++. +++|+++|++||+|++|+|++++.+ ++++|++||+|++.++|++|++.||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45678899998 44443 4689999999999999999998765 46899999999999999999999985
Q ss_pred ccCCeeEEEEEccc
Q 023634 87 VIDGRRANCNLACL 100 (279)
Q Consensus 87 ~i~Gr~i~V~~a~~ 100 (279)
.++||.|+|++...
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 59999999998753
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=3.6e-14 Score=122.80 Aligned_cols=76 Identities=11% Similarity=0.107 Sum_probs=66.3
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCE--EEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCe----eE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEI--LEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR----RA 93 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I--~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr----~i 93 (279)
..++|||+|||++++|++|+++|++||.| ++++++.++ ++++|||||+|++.++|++||+.||. +|+++ .+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 45789999999999999999999999999 899998875 55679999999999999999999975 48776 46
Q ss_pred EEEEc
Q 023634 94 NCNLA 98 (279)
Q Consensus 94 ~V~~a 98 (279)
.|+++
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 66664
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.48 E-value=8.5e-14 Score=124.02 Aligned_cols=76 Identities=25% Similarity=0.459 Sum_probs=68.9
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
.....++|||+|||+++|+++|+++|++||.|.+|+|.++ +|||||+|.+.++|++||+.++. .|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~ 91 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIR 91 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEee
Confidence 3456689999999999999999999999999999999654 78999999999999999998874 5999999999
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
++.
T Consensus 92 ~a~ 94 (261)
T 3sde_A 92 FAT 94 (261)
T ss_dssp ECC
T ss_pred ecc
Confidence 985
No 197
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=6.8e-14 Score=125.74 Aligned_cols=80 Identities=9% Similarity=0.107 Sum_probs=68.3
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLA 98 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a 98 (279)
..++|||+|||+++++++|+++|++|| +|.+|+|++++. ++++|||||+|.+.++|++||+.++. .|+|+.|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 568999999999999999999999999 999999999875 88999999999999999999998864 599999999998
Q ss_pred ccC
Q 023634 99 CLG 101 (279)
Q Consensus 99 ~~~ 101 (279)
.+.
T Consensus 195 ~~~ 197 (292)
T 2ghp_A 195 NPL 197 (292)
T ss_dssp CCC
T ss_pred CCC
Confidence 644
No 198
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.48 E-value=1.4e-13 Score=113.53 Aligned_cols=72 Identities=18% Similarity=0.427 Sum_probs=63.6
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhc----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-Ccc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVI 88 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i 88 (279)
+.++|||+|||+++++++|+++|++| | .|.++++.+ +||||||+|.+.++|++|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 56899999999999999999999999 6 777777654 4899999999999999999 675 569
Q ss_pred CCeeEEEEEcc
Q 023634 89 DGRRANCNLAC 99 (279)
Q Consensus 89 ~Gr~i~V~~a~ 99 (279)
+|+.|+|++++
T Consensus 76 ~g~~i~v~~~~ 86 (172)
T 2g4b_A 76 QGQSLKIRRPH 86 (172)
T ss_dssp TTEECEEECCS
T ss_pred cCceeeecCCc
Confidence 99999999874
No 199
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=8.7e-14 Score=117.98 Aligned_cols=75 Identities=9% Similarity=0.166 Sum_probs=68.4
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC-CeeEEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID-GRRANCNL 97 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~-Gr~i~V~~ 97 (279)
..++|||+|||+++++++|+++|++|| +|++|+|+.+. +|+|||+|.+.++|++||+.++. .|+ |++|+|++
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 193 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 193 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEe
Confidence 478999999999999999999999999 99999997642 78999999999999999999875 588 99999999
Q ss_pred ccc
Q 023634 98 ACL 100 (279)
Q Consensus 98 a~~ 100 (279)
+++
T Consensus 194 a~~ 196 (198)
T 1qm9_A 194 SKS 196 (198)
T ss_dssp ECC
T ss_pred ecc
Confidence 864
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.3e-13 Score=120.35 Aligned_cols=75 Identities=9% Similarity=0.166 Sum_probs=68.2
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC-CeeEEEEE
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID-GRRANCNL 97 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~-Gr~i~V~~ 97 (279)
..++|||+|||+++++++|+++|++|| +|++|+|+.+ .+|||||+|++.++|++||+.++. .|+ |++|+|++
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~ 224 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSF 224 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEE
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEE
Confidence 468999999999999999999999999 9999999653 378999999999999999999875 588 99999999
Q ss_pred ccc
Q 023634 98 ACL 100 (279)
Q Consensus 98 a~~ 100 (279)
+++
T Consensus 225 a~~ 227 (229)
T 2adc_A 225 SKS 227 (229)
T ss_dssp CSS
T ss_pred ecC
Confidence 864
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.6e-13 Score=109.15 Aligned_cols=80 Identities=14% Similarity=0.145 Sum_probs=69.1
Q ss_pred CccEEEECCCC--ccC---cHHHHHHHHHhcCCEEEEEEeecCC----CCCccceEEEEeCCHHHHHHHHHhcCC-ccCC
Q 023634 21 TYTKVFVGGLA--WET---QKETMEKYFEQFGEILEAVVITDKA----TGRSKGYGFVTFREPEAAMKACVDAAP-VIDG 90 (279)
Q Consensus 21 ~~~~lfVgnLp--~~~---tee~L~~~F~~fG~I~~v~i~~dk~----tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~G 90 (279)
..+.|+|.|+- .++ -+++|++.|++||+|++|+|++++. +++++||+||+|++.++|++||+.||. .++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 56889999983 233 3689999999999999999999865 467889999999999999999999985 5999
Q ss_pred eeEEEEEccc
Q 023634 91 RRANCNLACL 100 (279)
Q Consensus 91 r~i~V~~a~~ 100 (279)
|.|+|++...
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 202
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.44 E-value=3.1e-13 Score=113.94 Aligned_cols=73 Identities=18% Similarity=0.420 Sum_probs=62.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhc----C-------CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQF----G-------EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI 88 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~f----G-------~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i 88 (279)
..++|||+|||+++++++|+++|++| | .|.++++ ++++|||||+|.+.++|++|| .++. .|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 4 5666655 445899999999999999999 7765 59
Q ss_pred CCeeEEEEEccc
Q 023634 89 DGRRANCNLACL 100 (279)
Q Consensus 89 ~Gr~i~V~~a~~ 100 (279)
+|+.|+|++++.
T Consensus 76 ~g~~i~v~~~~~ 87 (198)
T 2yh0_A 76 QGQSLKIRRPHD 87 (198)
T ss_dssp TTEEEEEECCCC
T ss_pred cCceEEEeCCCC
Confidence 999999998754
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3.1e-12 Score=119.12 Aligned_cols=75 Identities=17% Similarity=0.241 Sum_probs=62.4
Q ss_pred CCCCccEEEECC--CCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-cc---CCe
Q 023634 18 GDTTYTKVFVGG--LAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VI---DGR 91 (279)
Q Consensus 18 ~d~~~~~lfVgn--Lp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i---~Gr 91 (279)
.+...++|||+| |+++++|++|+++|++||+|++|++.. +||||||+|++.++|++||+.||. ++ .|+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 456678999999 578999999999999999999987753 479999999999999999999985 34 345
Q ss_pred --eEEEEEc
Q 023634 92 --RANCNLA 98 (279)
Q Consensus 92 --~i~V~~a 98 (279)
.|.|+++
T Consensus 88 ~~~ly~~~~ 96 (345)
T 3tht_A 88 KITLYLNFV 96 (345)
T ss_dssp EEECEEEEC
T ss_pred ceEEEEEEe
Confidence 4566665
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=2.2e-11 Score=96.15 Aligned_cols=76 Identities=13% Similarity=0.119 Sum_probs=62.2
Q ss_pred CccEEEECCCCc--cC--------cHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccC
Q 023634 21 TYTKVFVGGLAW--ET--------QKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VID 89 (279)
Q Consensus 21 ~~~~lfVgnLp~--~~--------tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~ 89 (279)
..+.|.|.|+=. +. -+++|+++|++||+|++|+|.++. .+||+||+|++.++|++||+.||+ .++
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 345677777632 21 146899999999999999997653 489999999999999999999985 599
Q ss_pred CeeEEEEEccc
Q 023634 90 GRRANCNLACL 100 (279)
Q Consensus 90 Gr~i~V~~a~~ 100 (279)
||.|+|+++..
T Consensus 82 GR~i~v~~~~~ 92 (114)
T 3s6e_A 82 GKMITAAYVPL 92 (114)
T ss_dssp TEECEEEEECH
T ss_pred CEEEEEEEEcH
Confidence 99999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.3e-10 Score=92.56 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=68.9
Q ss_pred CCCCCCccEEEECCCCcc-CcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHHhcC---CccCC
Q 023634 16 QFGDTTYTKVFVGGLAWE-TQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACVDAA---PVIDG 90 (279)
Q Consensus 16 ~~~d~~~~~lfVgnLp~~-~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~-~e~A~~Ai~~~~---~~i~G 90 (279)
+..-.+.+.|+|+||+++ +++++|+++|++||+|..|.++++.. .|||+|.+ .++|++|++.++ .+|++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 445567899999999999 99999999999999999999998865 69999999 899999999984 35999
Q ss_pred eeEEEEEcc
Q 023634 91 RRANCNLAC 99 (279)
Q Consensus 91 r~i~V~~a~ 99 (279)
..+++++..
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 999988765
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=3.6e-10 Score=85.40 Aligned_cols=73 Identities=21% Similarity=0.206 Sum_probs=60.0
Q ss_pred CccEEEECCCCc----cCcH----HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCe
Q 023634 21 TYTKVFVGGLAW----ETQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGR 91 (279)
Q Consensus 21 ~~~~lfVgnLp~----~~te----e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr 91 (279)
..-+|+|.-++. +.-. .+|.+.|++||+|..++++.|+ +||+|++.++|.+||+ ++. .|+||
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCe
Confidence 446788876652 2222 5799999999999999999884 8999999999999998 764 69999
Q ss_pred eEEEEEcccCC
Q 023634 92 RANCNLACLGV 102 (279)
Q Consensus 92 ~i~V~~a~~~~ 102 (279)
+|+|+++++..
T Consensus 77 ~LkV~lkt~dW 87 (91)
T 2dnr_A 77 TITIALKSPSG 87 (91)
T ss_dssp EEEEEECCCSS
T ss_pred EEEEEeCCCCc
Confidence 99999997654
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.87 E-value=3.8e-09 Score=91.43 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred CcHHHHHHHHHhcCCEEEEEEeecC----CCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEEEccc
Q 023634 34 TQKETMEKYFEQFGEILEAVVITDK----ATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCNLACL 100 (279)
Q Consensus 34 ~tee~L~~~F~~fG~I~~v~i~~dk----~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~~a~~ 100 (279)
-.+++|++.|++||+|.+++|+++. .+++++|++||+|.+.++|++||+.|+. .++||.|.|++...
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 3467899999999999999999654 3458999999999999999999999985 59999999999753
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=2.7e-09 Score=81.02 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCccEEEECCCCcc-----CcH----HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC-CccC
Q 023634 20 TTYTKVFVGGLAWE-----TQK----ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA-PVID 89 (279)
Q Consensus 20 ~~~~~lfVgnLp~~-----~te----e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~-~~i~ 89 (279)
...-+|+|.-++.+ +-. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+||+ ++ ..|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~ 83 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVK 83 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEET
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeC
Confidence 45578999887632 222 5689999999999999999884 9999999999999999 65 5699
Q ss_pred CeeEEEEEcc
Q 023634 90 GRRANCNLAC 99 (279)
Q Consensus 90 Gr~i~V~~a~ 99 (279)
||.|+|+++.
T Consensus 84 Gr~L~V~~k~ 93 (95)
T 1ufw_A 84 GRAVKISGPS 93 (95)
T ss_dssp TEEEEEECCC
T ss_pred CeEEEEeccC
Confidence 9999999874
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.9e-06 Score=65.88 Aligned_cols=74 Identities=12% Similarity=0.145 Sum_probs=65.4
Q ss_pred CCCccEEEECCCCccCcHHHHHHHHHhc-----CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCee
Q 023634 19 DTTYTKVFVGGLAWETQKETMEKYFEQF-----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRR 92 (279)
Q Consensus 19 d~~~~~lfVgnLp~~~tee~L~~~F~~f-----G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~ 92 (279)
+...++|-+-|||..++++.|+.+.+.+ |.|+++.+..|. +-|+|+|+|...|-||.-.++. +|+||+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH------~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF------NGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT------TEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC------CceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 3456889999999999999999999999 999999999884 4799999999999999988875 599999
Q ss_pred EEEEEc
Q 023634 93 ANCNLA 98 (279)
Q Consensus 93 i~V~~a 98 (279)
|+|--.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 998654
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=2.4e-05 Score=60.08 Aligned_cols=73 Identities=29% Similarity=0.352 Sum_probs=62.6
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHh-c----CCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCee
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ-F----GEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRR 92 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~-f----G~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~ 92 (279)
+..-.++|.|.|||.++.++.|+-.|+. . |+|++++... .-|+|+|.+.+.|++.|+...+.|++.+
T Consensus 4 ~~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~ 75 (104)
T 2dhx_A 4 GSSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQ 75 (104)
T ss_dssp SCCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSB
T ss_pred CccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeE
Confidence 3455689999999999999999999986 2 5888887754 3699999999999999998888999999
Q ss_pred EEEEEc
Q 023634 93 ANCNLA 98 (279)
Q Consensus 93 i~V~~a 98 (279)
|.|.-.
T Consensus 76 LsV~P~ 81 (104)
T 2dhx_A 76 LSLRPA 81 (104)
T ss_dssp CEEEEC
T ss_pred EEEEcC
Confidence 999765
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.52 E-value=0.00037 Score=53.58 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=61.7
Q ss_pred CccEEEECCCCccC-c----HHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc-cCCeeEE
Q 023634 21 TYTKVFVGGLAWET-Q----KETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV-IDGRRAN 94 (279)
Q Consensus 21 ~~~~lfVgnLp~~~-t----ee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~-i~Gr~i~ 94 (279)
-.++|+|.||+.++ + .++++++|.+|+++.....++.-+ =..|.|.+.++|.+|-..+++. +.|++|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR------Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r 77 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK------RVRINFSNPLSAADARLRLHKTEFLGKEMK 77 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT------EEEEECSSTTHHHHHHHTSTTSEETTEECE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce------EEEEEeCChHHHHHHHHHhccceecCceeE
Confidence 35789999999875 2 257899999999999888776532 3689999999999999999865 9999999
Q ss_pred EEEccc
Q 023634 95 CNLACL 100 (279)
Q Consensus 95 V~~a~~ 100 (279)
|-.+..
T Consensus 78 ~YFgq~ 83 (104)
T 1wey_A 78 LYFAQT 83 (104)
T ss_dssp EECCCC
T ss_pred EEecCC
Confidence 999863
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.39 E-value=0.00032 Score=53.26 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=48.3
Q ss_pred CCCCCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 15 GQFGDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 15 ~~~~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
.+........||+-++|.++...||.++|+.||.| .|+.+.|. -|||.|.+++.|..|+..+
T Consensus 8 g~d~~p~r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 8 GPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSCCCCCCCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCCCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 33333333444444999999999999999999954 67777775 6999999999999999865
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.32 E-value=0.0013 Score=51.72 Aligned_cols=74 Identities=18% Similarity=0.180 Sum_probs=59.2
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCC-eeEEEE
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDG-RRANCN 96 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~G-r~i~V~ 96 (279)
+....+-|-|-+.|.+. .+.+.+.|++||+|.+..... ...+-.|+|.++.+|++||.+....|++ -.|-|.
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 44567889999999885 567778899999999987622 2458999999999999999998777874 667777
Q ss_pred Ec
Q 023634 97 LA 98 (279)
Q Consensus 97 ~a 98 (279)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 75
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.95 E-value=0.00091 Score=50.90 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=45.5
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
..++| ++|.++...||.++|+.|| -..|+.+.|. -|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555 9999999999999999999 4577777775 6999999999999999865
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.92 E-value=0.003 Score=47.36 Aligned_cols=64 Identities=13% Similarity=0.099 Sum_probs=52.2
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHhcCC
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVDAAP 86 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~--skG~aFV~F~~~e~A~~Ai~~~~~ 86 (279)
+||.|++||+.+||+++.+.+....++.-...+..+.+.+ .-.-|+|.|.+.|++..-.+..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g 67 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDG 67 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCC
Confidence 6899999999999999999999888877777666554433 235689999999999988888763
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.20 E-value=0.0065 Score=48.51 Aligned_cols=77 Identities=21% Similarity=0.333 Sum_probs=54.8
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEE-EEeec--------CCCCC-----ccceEEEEeCCHHHHHHHHHhcCCc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEA-VVITD--------KATGR-----SKGYGFVTFREPEAAMKACVDAAPV 87 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v-~i~~d--------k~tg~-----skG~aFV~F~~~e~A~~Ai~~~~~~ 87 (279)
...|.|-+.|++.+ ..+-+.|++||.|++- .+.++ +.+.+ ...+-.|+|+++.+|++||.+...+
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 35677778887765 4566679999999772 22110 00011 2457799999999999999999989
Q ss_pred cCCeeEEEEEcc
Q 023634 88 IDGRRANCNLAC 99 (279)
Q Consensus 88 i~Gr~i~V~~a~ 99 (279)
|+|..|-|....
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999999998764
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.13 E-value=0.0018 Score=62.14 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=43.1
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA 84 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~ 84 (279)
.++|+|. ++.++++++|.+.|++||.|.++..-+++ .-|+.|+|.+.+++.++++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 4799997 79999999999999999999999776553 369999999999998876553
No 218
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.62 E-value=0.0084 Score=48.16 Aligned_cols=33 Identities=18% Similarity=0.063 Sum_probs=28.1
Q ss_pred EEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 51 EAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 51 ~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
.++|+.+.. +++||+||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhc
Confidence 466777753 689999999999999999998875
No 219
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.05 E-value=0.02 Score=43.31 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=46.4
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCC--ccceEEEEeCCHHHHHHHHHhcCC
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGR--SKGYGFVTFREPEAAMKACVDAAP 86 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~--skG~aFV~F~~~e~A~~Ai~~~~~ 86 (279)
..-||.|+.||+.+||+++.+.++..-++.....+..+.+-+ .-.-|+|.|.+.|+...-.+..+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 346899999999999999888776655543323322222221 124589999999999998888764
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.30 E-value=0.046 Score=43.48 Aligned_cols=40 Identities=18% Similarity=0.030 Sum_probs=34.2
Q ss_pred CCCccceEEEEeCCHHHHHHHHHhc-CC-ccCCeeEEEEEccc
Q 023634 60 TGRSKGYGFVTFREPEAAMKACVDA-AP-VIDGRRANCNLACL 100 (279)
Q Consensus 60 tg~skG~aFV~F~~~e~A~~Ai~~~-~~-~i~Gr~i~V~~a~~ 100 (279)
..+.+|+++|+|.+.++|++|++.+ +. +|+| .+.+.++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3567999999999999999999998 64 5999 889887753
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.41 E-value=0.52 Score=45.54 Aligned_cols=55 Identities=24% Similarity=0.341 Sum_probs=45.3
Q ss_pred ccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 22 YTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
...++|+ ++..++..+|+++|+.||.| +|+.+.|. .+||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 4566666 89899999999999999954 66666553 79999999999999998874
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=65.32 E-value=13 Score=25.57 Aligned_cols=67 Identities=10% Similarity=0.147 Sum_probs=39.4
Q ss_pred EEEEC-CCCccCcHHHHHHHHHhcC-----CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC-ccCCeeEEEE
Q 023634 24 KVFVG-GLAWETQKETMEKYFEQFG-----EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP-VIDGRRANCN 96 (279)
Q Consensus 24 ~lfVg-nLp~~~tee~L~~~F~~fG-----~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~-~i~Gr~i~V~ 96 (279)
+|||. +--..++..+|..++..-+ +|-.+.|..+ |.||+-... .++++++.++. .+.|++++|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 45663 1234466677777776544 3555666433 899998654 56788888864 5999999988
Q ss_pred Ecc
Q 023634 97 LAC 99 (279)
Q Consensus 97 ~a~ 99 (279)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 763
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=58.38 E-value=2.1 Score=32.15 Aligned_cols=19 Identities=11% Similarity=0.366 Sum_probs=0.0
Q ss_pred CCccEEEECCCCccCcHHH
Q 023634 20 TTYTKVFVGGLAWETQKET 38 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~ 38 (279)
.+.++|||+|||+++|++.
T Consensus 95 ~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 95 KEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp -------------------
T ss_pred CCCCceEeCCCCCCccccc
Confidence 3456899999999999874
No 224
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=50.39 E-value=36 Score=25.47 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=43.4
Q ss_pred CCccCcHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEc
Q 023634 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (279)
Q Consensus 30 Lp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a 98 (279)
++.-++-++|.... +.||.-.++....+ -..|-..+.++..+||+.++....-+.|+|-+.
T Consensus 24 f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~--------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~ 85 (103)
T 2cu1_A 24 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLV 85 (103)
T ss_dssp EESSCCHHHHHHHHHHHHSSCEEEEECSS--------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEE
T ss_pred ccCCccHHHHHHHHHHHhCCeeeEEEecc--------eEEEeccCHHHHHHHHHHHccCCcccceEEEEe
Confidence 46677777776555 67999888887633 367999999999999999864433344455444
No 225
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=48.58 E-value=48 Score=21.75 Aligned_cols=58 Identities=14% Similarity=0.037 Sum_probs=42.8
Q ss_pred CccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcC
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAA 85 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~ 85 (279)
...++.|.++.-.-=...|++.+++ -.|..+.+-.. .+-+.|+|.+.++..++|+...
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 3457888888766667889999988 88888877443 3457788876777778887754
No 226
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=41.04 E-value=1.1e+02 Score=22.62 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=50.5
Q ss_pred CCccEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhc-CC-------ccCCe
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDA-AP-------VIDGR 91 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~-~~-------~i~Gr 91 (279)
...|-|-|-|+|..+-..++--.....|---.|..+ .|-+.|.|.+.++..-||..+ ++ +|.|.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkllnhnnnklqieirgq 81 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIRGQ 81 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEETTTTEEEEEETTE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEcce
Confidence 456788889999998888776666667754455544 346999999999999999875 32 36676
Q ss_pred eEEEE
Q 023634 92 RANCN 96 (279)
Q Consensus 92 ~i~V~ 96 (279)
.+.|-
T Consensus 82 icdvi 86 (129)
T 4eyt_A 82 ICDVI 86 (129)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 66554
No 227
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=37.89 E-value=83 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=26.3
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 023634 48 EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (279)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 86 (279)
+|.++.++. ..+||-||+++..++...+|+...+
T Consensus 39 ~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 39 DVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred cEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 466666653 2699999999999998888887754
No 228
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=35.58 E-value=1.2e+02 Score=21.73 Aligned_cols=56 Identities=16% Similarity=0.090 Sum_probs=35.4
Q ss_pred cEEEECCCCccCcHHHHHHHH-------HhcCCEEEEEEeecCCCCCccce--E-EEEeCCHHHHHH
Q 023634 23 TKVFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGRSKGY--G-FVTFREPEAAMK 79 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F-------~~fG~I~~v~i~~dk~tg~skG~--a-FV~F~~~e~A~~ 79 (279)
+.|.+-.|..++++++++++. .+.-.|+++.+-++.. .+.++| + .++|+|.++.+.
T Consensus 6 ~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~-~~~~~~~~~~~~~F~s~e~l~~ 71 (103)
T 2qyc_A 6 LHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENVA-ARSQGYTHATSSAFVDAAAHDA 71 (103)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECCC-TTCTTCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCCC-CCCCCccEEEEEEECCHHHHHH
Confidence 344555677777766544443 3467788888877754 454554 3 448888887654
No 229
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=34.90 E-value=1.2e+02 Score=22.65 Aligned_cols=61 Identities=7% Similarity=0.005 Sum_probs=38.5
Q ss_pred CCCCccEEEECCCCccCcHHHHHHHHHh-------cCCEEEEEEeecCCCCCccce--E-EEEeCCHHHHHH
Q 023634 18 GDTTYTKVFVGGLAWETQKETMEKYFEQ-------FGEILEAVVITDKATGRSKGY--G-FVTFREPEAAMK 79 (279)
Q Consensus 18 ~d~~~~~lfVgnLp~~~tee~L~~~F~~-------fG~I~~v~i~~dk~tg~skG~--a-FV~F~~~e~A~~ 79 (279)
.....+.|.+-.|..++++++++++.+. .-.|+++.+-++.. .+.++| + .++|+|.++.+.
T Consensus 18 ~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~ 88 (116)
T 3bgu_A 18 QGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRA 88 (116)
T ss_dssp SSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHH
T ss_pred CCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHH
Confidence 3345566777778888888776555543 34677777776653 444544 3 347888776654
No 230
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=34.88 E-value=72 Score=23.84 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=27.0
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCc
Q 023634 48 EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPV 87 (279)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~ 87 (279)
.|.++....+ .|||-|||=.+..++++||+.+.+.
T Consensus 40 ~I~Si~~~~~-----lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEH-----VKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTT-----CCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCC-----CceEEEEEeCCHHHHHHHHhcccce
Confidence 4666654322 5899999999999999999987543
No 231
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=39.29 E-value=9.1 Score=28.92 Aligned_cols=54 Identities=15% Similarity=0.181 Sum_probs=34.8
Q ss_pred CcHHHHHHHHHhcCCEEEEEEeecCCCCCccceE--EEEeCCHHHHHHHHHhcCCccC
Q 023634 34 TQKETMEKYFEQFGEILEAVVITDKATGRSKGYG--FVTFREPEAAMKACVDAAPVID 89 (279)
Q Consensus 34 ~tee~L~~~F~~fG~I~~v~i~~dk~tg~skG~a--FV~F~~~e~A~~Ai~~~~~~i~ 89 (279)
.++++|+++..+.+ +..+.+.+...+|+. -|- +=.|.++++|.+|++.|-..|.
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l~ 89 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADVQ 89 (106)
Confidence 45677888777775 455655554333332 222 2278999999999999865543
No 232
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.44 E-value=1.1e+02 Score=25.02 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=37.2
Q ss_pred EEEECCCCc-c--------CcHHHHHHHH--HhcCCEEEEEEeecCCCCCccceEEEEeCC-HHHHHHHHHh
Q 023634 24 KVFVGGLAW-E--------TQKETMEKYF--EQFGEILEAVVITDKATGRSKGYGFVTFRE-PEAAMKACVD 83 (279)
Q Consensus 24 ~lfVgnLp~-~--------~tee~L~~~F--~~fG~I~~v~i~~dk~tg~skG~aFV~F~~-~e~A~~Ai~~ 83 (279)
.+.|-|++. . .+..+|++.| ..|..++ |+.+.++ .-++|++.|+|.+ ..--..|++.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 455667765 2 3346899977 8897765 5555554 2478999999974 4445555543
No 233
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=31.14 E-value=1.7e+02 Score=21.95 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCccEEEECCCCccCcHHHHHHHHH-------hcCCEEEEEEeecCCC-CCccce--E-EEEeCCHHHHHHHH
Q 023634 20 TTYTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT-GRSKGY--G-FVTFREPEAAMKAC 81 (279)
Q Consensus 20 ~~~~~lfVgnLp~~~tee~L~~~F~-------~fG~I~~v~i~~dk~t-g~skG~--a-FV~F~~~e~A~~Ai 81 (279)
...+.|.+-.|..++++++++++.+ +.-.|+++.+-++... ++.++| + .++|+|.++-+.-.
T Consensus 19 ~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~s~e~~~~g~~~~l~~~F~s~e~l~~Y~ 91 (121)
T 3bb5_A 19 GMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNRDFEQKSERYPYGFLCTFTDKAALDAYA 91 (121)
T ss_dssp CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBCCTTSSCTTCCEEEEEEESSHHHHHHHH
T ss_pred CcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCCccccCCCeeEEEEEEECCHHHHHHHH
Confidence 3456677778988888776555443 3567888887776532 444554 3 34889988765533
No 234
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=29.30 E-value=1.2e+02 Score=22.16 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=38.9
Q ss_pred CccEEEECCCCccCcHHHHHHHHH-------hcCCEEEEEEeecCCC-CCccce--E-EEEeCCHHHHHHHH
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT-GRSKGY--G-FVTFREPEAAMKAC 81 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~-------~fG~I~~v~i~~dk~t-g~skG~--a-FV~F~~~e~A~~Ai 81 (279)
..+.|.+-.|..++++++++++.+ +.-.|+++.+-++... ++.++| + .++|+|.++.+.-.
T Consensus 10 mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~ 81 (112)
T 1q4r_A 10 PVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDVSIENLHQGYTHIFESTFESKEAVAEYI 81 (112)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECCCSSSCSTTCCEEEEEEESCHHHHHHHH
T ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCCCccccCCCccEEEEEEECCHHHHHHHh
Confidence 355666667888888777554443 3456778877776532 344554 3 45899988766543
No 235
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=28.22 E-value=77 Score=26.56 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=22.7
Q ss_pred ccceEEEEeCCHHHHHHHHHhcCCc
Q 023634 63 SKGYGFVTFREPEAAMKACVDAAPV 87 (279)
Q Consensus 63 skG~aFV~F~~~e~A~~Ai~~~~~~ 87 (279)
-|||-|||=.+..++++||+.+.+.
T Consensus 148 lkGYIyVEA~~~~~V~~ai~Gi~~v 172 (200)
T 2exu_A 148 YTGRIYIEAPKQSVIEKFCNGVPDI 172 (200)
T ss_dssp STTEEEEECSCHHHHHHHHTTCTTE
T ss_pred CcEEEEEEECCHHHHHHHHhhhhhh
Confidence 5899999999999999999998765
No 236
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=25.84 E-value=11 Score=30.12 Aligned_cols=28 Identities=14% Similarity=0.218 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCEEEEEEeecCCCCCccceEEEEeC
Q 023634 37 ETMEKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 72 (279)
Q Consensus 37 e~L~~~F~~fG~I~~v~i~~dk~tg~skG~aFV~F~ 72 (279)
+|+.++|...|.|+.. .+ .|||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwf---n~-----~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---NV-----RMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---ET-----TTTEEEEEEE
T ss_pred CcccccccceeEEEEE---EC-----CCCeeEEeeC
Confidence 4556666655555432 22 3899999976
No 237
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=25.70 E-value=1.9e+02 Score=21.31 Aligned_cols=49 Identities=10% Similarity=0.065 Sum_probs=38.6
Q ss_pred CCccCcHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCC
Q 023634 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAP 86 (279)
Q Consensus 30 Lp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~ 86 (279)
++.-+.-++|.... ..||.-.++..+.+ .-.|-..+.++..+||+.++.
T Consensus 36 f~RPv~f~el~~kv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDr 85 (100)
T 2npt_B 36 FPRPVKLEDLRSKAKIAFGQSMDLHYTNN--------ELVIPLTTQDDLDKAVELLDR 85 (100)
T ss_dssp ECSSCCHHHHHHHHHHHHTSCEEEEEEET--------TEEEECCCHHHHHHHHHHHHH
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEecccHHHHHHHHHHhcc
Confidence 45667778876655 67999999888755 367889999999999998753
No 238
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=24.15 E-value=2e+02 Score=20.98 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=43.1
Q ss_pred CCccCcHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEEEc
Q 023634 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCNLA 98 (279)
Q Consensus 30 Lp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~~a 98 (279)
++.-++-++|.... ..||.-.++..+.+ --.|-..+.++..+||+.++....-+.|+|-+.
T Consensus 20 f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~iPL~~Q~DLDkAvelLDrs~~mkSLRIlL~ 81 (94)
T 2jrh_A 20 FSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRILLL 81 (94)
T ss_dssp ECSSCCHHHHHHHHHHHHCSSEEEEEECS--------SCEEECCSHHHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eeEEeccCHHHHHHHHHHhccCccccceEEEEE
Confidence 45567777776555 67999888887744 256888999999999998864444444455444
No 239
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.90 E-value=87 Score=22.66 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=21.7
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023634 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (279)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (279)
+|++|+|.+-...++-|+||=|+|.+
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 68888887776678899999999975
No 240
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=22.41 E-value=17 Score=28.31 Aligned_cols=12 Identities=8% Similarity=0.047 Sum_probs=5.4
Q ss_pred CHHHHHHHHHhc
Q 023634 73 EPEAAMKACVDA 84 (279)
Q Consensus 73 ~~e~A~~Ai~~~ 84 (279)
++++.++.++..
T Consensus 52 t~~~l~~~F~~~ 63 (156)
T 1h2v_Z 52 TEEQIYELFSKS 63 (156)
T ss_dssp CHHHHHHHHGGG
T ss_pred CHHHHHHHHHhc
Confidence 344444444443
No 241
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.83 E-value=1.9e+02 Score=20.66 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=36.6
Q ss_pred EECCCCccCcHHHHHHHHHh-cC-CEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHh
Q 023634 26 FVGGLAWETQKETMEKYFEQ-FG-EILEAVVITDKATGRSKGYGFVTFREPEAAMKACVD 83 (279)
Q Consensus 26 fVgnLp~~~tee~L~~~F~~-fG-~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~ 83 (279)
|+-.++.+.+..+|++.+++ |+ +|.+|..+.-+. +. -=|+|++....+|......
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~-~~--KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPR-GE--KKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTT-SC--EEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCC-Cc--eEEEEEcCCCCcHHHHHHh
Confidence 33346778899999999987 55 566676555431 22 2389999887777665444
No 242
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=21.50 E-value=2.3e+02 Score=20.34 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=37.7
Q ss_pred CccEEEECCCCccCcHHHHHHHHH-------hcCCEEEEEEeecCCC---CCccce--E-EEEeCCHHHHHH
Q 023634 21 TYTKVFVGGLAWETQKETMEKYFE-------QFGEILEAVVITDKAT---GRSKGY--G-FVTFREPEAAMK 79 (279)
Q Consensus 21 ~~~~lfVgnLp~~~tee~L~~~F~-------~fG~I~~v~i~~dk~t---g~skG~--a-FV~F~~~e~A~~ 79 (279)
..+.|.+-.|..++++++++++.+ +.-.|+++.+-.+... ++.+|| + .++|+|.++.+.
T Consensus 8 mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~d~~l~~~F~s~e~l~~ 79 (108)
T 1tr0_A 8 LVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDLGMESAELNRGYTHAFESTFESKSGLQE 79 (108)
T ss_dssp CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECCSCSCTTTTTTCCEEEEEEESSHHHHHH
T ss_pred cEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCCccccccCCCccEEEEEEECCHHHHHH
Confidence 345666667888888777544433 4567888877776532 445554 3 448888887654
No 243
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=20.66 E-value=1.6e+02 Score=22.05 Aligned_cols=59 Identities=12% Similarity=0.054 Sum_probs=41.3
Q ss_pred CCccCcHHHHHHHH-HhcCCEEEEEEeecCCCCCccceEEEEeCCHHHHHHHHHhcCCccCCeeEEEE
Q 023634 30 LAWETQKETMEKYF-EQFGEILEAVVITDKATGRSKGYGFVTFREPEAAMKACVDAAPVIDGRRANCN 96 (279)
Q Consensus 30 Lp~~~tee~L~~~F-~~fG~I~~v~i~~dk~tg~skG~aFV~F~~~e~A~~Ai~~~~~~i~Gr~i~V~ 96 (279)
++.-++-++|.... ..||.-.++..+.+ --.|-..+.++.++||+.+.....-+.|+|-
T Consensus 47 f~RPvkf~dl~qkv~~afGq~ldl~y~nn--------EL~IPL~~Q~DLDkAvelLDrs~~mkSLRIl 106 (111)
T 2c60_A 47 FSRPVKYEDVEHKVTTVFGQPLDLHYMNN--------ELSILLKNQDDLDKAIDILDRSSSMKSLRIL 106 (111)
T ss_dssp ECSSCCHHHHHHHHHHHHSSCCEEEEECS--------SCEEECCSHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred cCCCccHHHHHHHHHHHhCCeeeeEEecc--------eEEEecccHHHHHHHHHHhccCccccceEEE
Confidence 45667777776655 57999888887754 2568889999999999987543333333443
No 244
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=20.60 E-value=78 Score=27.41 Aligned_cols=33 Identities=12% Similarity=0.336 Sum_probs=27.1
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEee
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVIT 56 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~ 56 (279)
..+.|+|||..++...|.++++. ..+.++.++.
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~ 143 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLV 143 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEe
Confidence 56789999999999999999987 6676665554
No 245
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=20.52 E-value=35 Score=29.78 Aligned_cols=35 Identities=6% Similarity=0.166 Sum_probs=28.1
Q ss_pred cEEEECCCCccCcHHHHHHHHHhcCCEEEEEEeec
Q 023634 23 TKVFVGGLAWETQKETMEKYFEQFGEILEAVVITD 57 (279)
Q Consensus 23 ~~lfVgnLp~~~tee~L~~~F~~fG~I~~v~i~~d 57 (279)
..+.|+|||..++..-|.++++....+..+.++..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45789999999999999999987666777666553
No 246
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=20.23 E-value=1.1e+02 Score=22.73 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.6
Q ss_pred CEEEEEEeecCCCCCccceEEEEeCC
Q 023634 48 EILEAVVITDKATGRSKGYGFVTFRE 73 (279)
Q Consensus 48 ~I~~v~i~~dk~tg~skG~aFV~F~~ 73 (279)
+|++|+|.+-...++-|+||=|+|.+
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 58888887766668899999999975
No 247
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=20.05 E-value=2.8e+02 Score=20.70 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=34.7
Q ss_pred ccEEEECCCCccCcHHHHHHHH-------HhcCCEEEEEEeecCCCCCccceEE-EEeCCHHHHHH
Q 023634 22 YTKVFVGGLAWETQKETMEKYF-------EQFGEILEAVVITDKATGRSKGYGF-VTFREPEAAMK 79 (279)
Q Consensus 22 ~~~lfVgnLp~~~tee~L~~~F-------~~fG~I~~v~i~~dk~tg~skG~aF-V~F~~~e~A~~ 79 (279)
.+.|.+-.|..++++++++++. .+.-.|+++.+-++......--++| ++|+|.++-+.
T Consensus 21 I~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~~~~~~~d~~l~~~F~s~edl~~ 86 (120)
T 3bde_A 21 IRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQISPKIDYHFGFSMEFADQAAYTR 86 (120)
T ss_dssp EEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECCCSSSCCCEEEEEEESSHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCCCCCCCccEEEEEEECCHHHHHH
Confidence 4555555677777766544443 3456788888877653211123444 48888877654
Done!