Query 023635
Match_columns 279
No_of_seqs 131 out of 305
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 05:30:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023635.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023635hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2873 Ubiquinol cytochrome c 100.0 8.9E-53 1.9E-57 382.2 17.6 211 50-271 63-277 (284)
2 COG5452 Uncharacterized conser 100.0 5.2E-41 1.1E-45 284.1 18.1 175 89-271 3-179 (180)
3 PF03981 Ubiq_cyt_C_chap: Ubiq 100.0 4.1E-38 8.9E-43 262.7 16.3 140 120-266 1-141 (141)
4 PF10660 MitoNEET_N: Iron-cont 44.6 7.3 0.00016 29.1 0.0 22 115-136 12-33 (64)
5 PF11711 Tim54: Inner membrane 42.1 33 0.00071 34.0 4.0 43 72-114 287-329 (382)
6 cd07646 I-BAR_IMD_IRSp53 Inver 29.8 3.4E+02 0.0074 25.2 8.3 63 99-162 6-74 (232)
7 PF01152 Bac_globin: Bacterial 29.4 1.8E+02 0.0039 22.9 5.9 67 117-196 48-117 (120)
8 PF10923 DUF2791: P-loop Domai 22.4 4.6E+02 0.01 26.3 8.4 64 158-223 121-200 (416)
9 KOG2412 Nuclear-export-signal 20.8 3E+02 0.0064 28.8 6.7 119 85-220 450-583 (591)
10 PF10440 WIYLD: Ubiquitin-bind 20.2 1.6E+02 0.0035 22.0 3.6 43 170-217 16-59 (65)
No 1
>KOG2873 consensus Ubiquinol cytochrome c reductase assembly protein CBP3 [Energy production and conversion]
Probab=100.00 E-value=8.9e-53 Score=382.25 Aligned_cols=211 Identities=46% Similarity=0.764 Sum_probs=193.4
Q ss_pred cccccccccCCccccccCCCCCCCCCcchhhHHHHHHHHhhhhccCchhhhhHHHHHHHHHHhcCChhhHhhcCCCCChh
Q 023635 50 VSLDKMFWSKPASLALALDSPLRVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFR 129 (279)
Q Consensus 50 ~~~~~~~~~kp~s~~~~~~s~~~~~e~~~~g~~~~~~kl~g~~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~ 129 (279)
+++++++|++|||++...+++.++-||...|+++++....-+|...+ ++.++|..|+++.+.+.||++|+|||||+
T Consensus 63 ~~~d~~k~~~P~~~~~~~~~~~ri~~~d~~gf~~~~~~~s~~y~~~~----as~~~y~~~~~~~df~~fy~~f~Lp~TF~ 138 (284)
T KOG2873|consen 63 VNLDSMKWSPPCSLAAKGGLPLRIDEPDKVGFRRFILTGSMKYKIQS----ASIQIYKDCIAQVDFEAFYEDFNLPDTFS 138 (284)
T ss_pred ccccccccCCCcchhhccCceeeeccccccceeeccchhHHHHHHHH----HHHHHHhhhhhhccHHHHHHHcCCchHHH
Confidence 48899999999999999999999999999999998887777665443 45569999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcCc-hhhHHHHHHHHHHHHHHHHHHHHhc-Cc-hhHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 023635 130 MTFSLLVLHMWFCLRRLKEEGK-EGVELGQYLYEIYNHDVEMRVSKAG-VN-LLLSKWMKELEKIFYGNIVAFDAALLPE 206 (279)
Q Consensus 130 ~rF~~~~LHvWLll~RLr~eg~-~G~~l~Q~L~D~f~~Dve~rlRe~G-V~-~~v~K~mK~l~~~fyG~~~aYDeaL~~~ 206 (279)
+||++|+||+|||++|+|+||. +|+.++|.|++.||+|||.|++++| || ...+++||+|.++|||+++|||||+.++
T Consensus 139 sWf~iT~LH~W~ll~Rl~~eg~~~g~~l~q~lv~~mw~DvelR~~k~gkvN~~r~~~~mk~l~~qf~gaifaYDeG~l~d 218 (284)
T KOG2873|consen 139 SWFQITVLHVWLLLMRLKAEGQGEGVDLQQYLVERMWEDVELRLSKAGKVNSLRTKQYMKDLERQFYGAIFAYDEGFLSD 218 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 9999999999999999999997 8999999999999999999999999 88 4556699999999999999999999987
Q ss_pred CChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhccc-cccCCCCC
Q 023635 207 AKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGN-FMFTPLEN 271 (279)
Q Consensus 207 d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~Lv~YvRrql~~L~~~~~e~ll~G~-~~f~~~~~ 271 (279)
|.+||.|||||+|+++++ +|+.+++.+|+|||+|+..|+.+++++++.|. +.|.++.+
T Consensus 219 --D~vLA~alWRnlF~~r~~-----~D~~hle~vV~YvR~qv~~Ls~l~t~dfivg~~v~f~pl~~ 277 (284)
T KOG2873|consen 219 --DRVLATALWRNLFSGRGN-----VDLVHLEAVVRYVRSQVYSLSSLSTDDFIVGGPVLFVPLQS 277 (284)
T ss_pred --chHHHHHHHHHHhCCCCC-----cCHHHHHHHHHHHHHHHHHHhccChhhhhccCceeeccCCC
Confidence 689999999999999863 46789999999999999999999999987665 99999973
No 2
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.2e-41 Score=284.07 Aligned_cols=175 Identities=26% Similarity=0.420 Sum_probs=161.2
Q ss_pred hhhhccCc-hhhhhHHHHHHHHHHhcCChhhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHH
Q 023635 89 MLFYSKQS-KSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHD 167 (279)
Q Consensus 89 ~g~~sk~s-~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~f~~D 167 (279)
++.|.|++ .+...+.++|..+|+++|+|.||.++|||||..|||+|+.||+.|+++|+|.+|+.+..++|+|+|.||.|
T Consensus 3 ~~lf~k~~~an~Ai~krlYa~~vaaARq~~fY~d~~VpDt~~GRfEmlSlh~il~~~R~kg~g~a~qeiaQei~Daff~d 82 (180)
T COG5452 3 LDLFLKKRPANLAIVKRLYASIVAAARQPAFYRDLGVPDTPLGRFEMLSLHMILYFHRLKGEGEAAQEIAQEIVDAFFKD 82 (180)
T ss_pred hHHhcCCCchhHHHHHHHHHHHHHHHhchhHHHhcCCCCCcchHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 45566777 45567788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHH
Q 023635 168 VEMRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRR 246 (279)
Q Consensus 168 ve~rlRe~GV~-~~v~K~mK~l~~~fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~Lv~YvRr 246 (279)
||+++||+||+ ..|+|+||+|..+||||+-+||.||...| -.+|++||-||++.+.++ +.....|+.||..
T Consensus 83 vDhs~RElGigD~gVpKrMKKlAgmFYGRl~aY~aAld~~d-~~alaaal~Rn~~pd~~~-------~p~a~~La~yv~~ 154 (180)
T COG5452 83 VDHSLRELGIGDQGVPKRMKKLAGMFYGRLEAYDAALDGND-ATALAAALARNIRPDVED-------WPEAAGLATYVLK 154 (180)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHhHHHHHHHHhcccc-hHHHHHHHHHhccccccc-------cchhHHHHHHHHH
Confidence 99999999998 99999999999999999999999998764 689999999999976553 3467899999999
Q ss_pred HHHhccCCCHhhhhccccccCCCCC
Q 023635 247 EVSCLSLTDKEAMFSGNFMFTPLEN 271 (279)
Q Consensus 247 ql~~L~~~~~e~ll~G~~~f~~~~~ 271 (279)
.-.+|..+|+|.|.+|.+.||.+..
T Consensus 155 ~~~~Laaq~~eal~~G~~t~p~p~g 179 (180)
T COG5452 155 VRDALAAQPEEALATGDLTWPLPDG 179 (180)
T ss_pred HHHHHHcCcHHHHHhCceeecCCCC
Confidence 9999999999999999999998753
No 3
>PF03981 Ubiq_cyt_C_chap: Ubiquinol-cytochrome C chaperone ; InterPro: IPR021150 Saccharomyces cerevisiae ubiquinol-cytochrome C chaperone is required for assembly of coenzyme QF-2-cytochrome C reductase. It appears to be found in a number of different organisms including Homo sapiens, Caenorhabditis elegans and Rhizobium meliloti. This entry also contains bacterial proteins belonging to the UPF0174 family.
Probab=100.00 E-value=4.1e-38 Score=262.66 Aligned_cols=140 Identities=36% Similarity=0.642 Sum_probs=132.2
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCc-hhHHHHHHHHHHHHHHHHHH
Q 023635 120 DVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVN-LLLSKWMKELEKIFYGNIVA 198 (279)
Q Consensus 120 ~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~f~~Dve~rlRe~GV~-~~v~K~mK~l~~~fyG~~~a 198 (279)
++||+||||++||+++.||+||+++|||+++++|+.+.|.|||.||+|+|.+||++||+ ..++|+||+|.++|||++.+
T Consensus 1 ~~~~~~dt~~~~f~~~~lh~~l~~~RLk~~~~~~~~~~q~l~~~~~~d~~~~l~~~gv~d~~~~k~~k~l~~~~~g~~~a 80 (141)
T PF03981_consen 1 EHFGVPDTFAGRFQMLGLHVWLVLRRLKAEGKEGKELEQALFDKFFEDMDERLREMGVGDLSVGKRMKKLQEQFYGRLLA 80 (141)
T ss_pred CCCCCccCHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999998899999999999999999999999997 88899999999999999999
Q ss_pred HHHhhCCCCChHHHHHHHHHHhccCCCCCCCChhHHHHHHHHHHHHHHHHHhccCCCHhhhhcccccc
Q 023635 199 FDAALLPEAKQDELQNVIWRNIFSDDGSSKPDDAAVRAVQAMTRYVRREVSCLSLTDKEAMFSGNFMF 266 (279)
Q Consensus 199 YDeaL~~~d~d~~LA~ALwRNvf~~~~~~~pd~~~~~~l~~Lv~YvRrql~~L~~~~~e~ll~G~~~f 266 (279)
||+|+..+ +.+||+|||||+|.+..+ .++.+++.|++|||+++.+|+.+|.++++.|.+.|
T Consensus 81 yd~al~~~--~~~La~al~rnv~~~~~~-----~~~~~~~~l~~yv~~~~~~l~~~~~~~~~~g~~~~ 141 (141)
T PF03981_consen 81 YDEALGSD--DAALAAALWRNVFGGREE-----RDPAQLAGLAGYVRRQLWHLDDLPDPAYLVGIPRF 141 (141)
T ss_pred HHHHhccC--HHHHHHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHHHHCCCHHHHHhCCCCC
Confidence 99999873 899999999999998732 24679999999999999999999999999999987
No 4
>PF10660 MitoNEET_N: Iron-containing outer mitochondrial membrane protein N-terminus ; InterPro: IPR019610 The CDGSH iron sulphur domain are a group of iron-sulphur (Fe-S) clusters and a unique 39 amino acid CDGSH domain [C-X-C-X2-(S/T)-X3-P-X-C-D-G-(S/A/T)-H]. The CDGSH iron sulphur domain protein (also referred to as mitoNEET) is an integral membrane protein located in the outer mitochondrial membrane and whose function may be to transport iron into the mitochondria []. Iron in turn is essential for the function of several mitochondrial enzymes. This entry represents the N-terminal of the mitoNEET and Miner-type proteins that carry a CDGSH-type cluster-binding domain (IPR018967 from INTERPRO) that coordinate a redox-active 2Fe-2S cluster. In the outer mitochondrian membrane (OMM), the CDGSH 2Fe-2S-containing domain is oriented towards the cytoplasm and is tethered to the mitochondrial membrane by the N-terminal domain found in higher vertebrates [, , ]. The whole protein regulates oxidative capacity and may function in electron transfer, for instance in redox reactions with metabolic intermediates, cofactors and/or proteins localized at the OMM.; GO: 0051537 2 iron, 2 sulfur cluster binding, 0043231 intracellular membrane-bounded organelle; PDB: 2R13_A 3REE_A 2QD0_B.
Probab=44.63 E-value=7.3 Score=29.07 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred ChhhHhhcCCCCChhhHHHHHH
Q 023635 115 KPAIYDVFNLEKTFRMTFSLLV 136 (279)
Q Consensus 115 ~p~fY~~~glpDTF~~rF~~~~ 136 (279)
=|.+.+.+-+||||.|||.+..
T Consensus 12 lP~YL~~lPiP~s~gg~f~Ls~ 33 (64)
T PF10660_consen 12 LPNYLKSLPIPDSFGGFFKLSV 33 (64)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccH
Confidence 4777889999999999999543
No 5
>PF11711 Tim54: Inner membrane protein import complex subunit Tim54; InterPro: IPR021056 Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targeting information, into the inner membrane [].
Probab=42.12 E-value=33 Score=33.99 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCCCcchhhHHHHHHHHhhhhccCchhhhhHHHHHHHHHHhcC
Q 023635 72 RVDEPKYEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVD 114 (279)
Q Consensus 72 ~~~e~~~~g~~~~~~kl~g~~sk~s~~~r~a~~LY~~iv~qar 114 (279)
.+.-|+..|+..+-.+|..||+++......++..+..|.+++|
T Consensus 287 ~ipfp~llGF~n~P~RiyRFfnrR~~ad~~g~~~aaiVl~~~R 329 (382)
T PF11711_consen 287 PIPFPHLLGFLNTPRRIYRFFNRRYLADDIGEEVAAIVLAQTR 329 (382)
T ss_pred EecCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 4666788999999999999999999988889888888888844
No 6
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=29.82 E-value=3.4e+02 Score=25.21 Aligned_cols=63 Identities=19% Similarity=0.358 Sum_probs=47.9
Q ss_pred hhhHHHHHHHHHHhcCChhhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCch------hhHHHHHHHH
Q 023635 99 IRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKE------GVELGQYLYE 162 (279)
Q Consensus 99 ~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~------G~~l~Q~L~D 162 (279)
.+.++.+|..|++|. +|.|-+-..++.++...+.-++++.=..+-=|...|+. .+.+++.|+.
T Consensus 6 ~~~t~~~yk~imeqf-nP~lrnlv~~G~~Y~kal~a~~~a~~~y~dAl~Kige~A~~s~gSkeLG~~L~~ 74 (232)
T cd07646 6 NRLTENVYKTIMEQF-NPSLRNFIAMGKNYEKALASVTFAAKGYFDALVKMGELASESQGSKELGDVLFQ 74 (232)
T ss_pred HHHhHHHHHHHHHcc-ChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHH
Confidence 355678999999997 99999999999999999988888887777666665532 2455555554
No 7
>PF01152 Bac_globin: Bacterial-like globin; InterPro: IPR001486 Globins are haem-containing proteins involved in binding and/or transporting oxygen. They belong to a very large and well studied family that is widely distributed in many organisms []. Globins have evolved from a common ancestor and can be divided into three groups: single-domain globins, and two types of chimeric globins, flavohaemoglobins and globin-coupled sensors. Bacteria have all three types of globins, while archaea lack flavohaemoglobins, and eukaryotes lack globin-coupled sensors []. Several functionally different haemoglobins can coexist in the same species. The major types of globins include: Haemoglobin (Hb): trimer of two alpha and two beta chains, although embryonic and foetal forms can substitute the alpha or beta chain for ones with higher oxygen affinity, such as gamma, delta, epsilon or zeta chains. Hb transports oxygen from lungs to other tissues in vertebrates []. Hb proteins are also present in unicellular organisms where they act as enzymes or sensors []. Myoglobin (Mb): monomeric protein responsible for oxygen storage in vertebrate muscle []. Neuroglobin: a myoglobin-like haemprotein expressed in vertebrate brain and retina, where it is involved in neuroprotection from damage due to hypoxia or ischemia []. Neuroglobin belongs to a branch of the globin family that diverged early in evolution. Cytoglobin: an oxygen sensor expressed in multiple tissues. Related to neuroglobin []. Erythrocruorin: highly cooperative extracellular respiratory proteins found in annelids and arthropods that are assembled from as many as 180 subunit into hexagonal bilayers []. Leghaemoglobin (legHb or symbiotic Hb): occurs in the root nodules of leguminous plants, where it facilitates the diffusion of oxygen to symbiotic bacteriods in order to promote nitrogen fixation. Non-symbiotic haemoglobin (NsHb): occurs in non-leguminous plants, and can be over-expressed in stressed plants []. Flavohaemoglobins (FHb): chimeric, with an N-terminal globin domain and a C-terminal ferredoxin reductase-like NAD/FAD-binding domain. FHb provides protection against nitric oxide via its C-terminal domain, which transfers electrons to haem in the globin []. Globin-coupled sensors: chimeric, with an N-terminal myoglobin-like domain and a C-terminal domain that resembles the cytoplasmic signalling domain of bacterial chemoreceptors. They bind oxygen, and act to initiate an aerotactic response or regulate gene expression [, ]. Protoglobin: a single domain globin found in archaea that is related to the N-terminal domain of globin-coupled sensors []. Truncated 2/2 globin: lack the first helix, giving them a 2-over-2 instead of the canonical 3-over-3 alpha-helical sandwich fold. Can be divided into three main groups (I, II and II) based on structural features []. This entry represents a group of haemoglobin-like proteins found in eubacteria, cyanobacteria, protozoa, algae and plants, but not in animals or yeast. These proteins have a truncated 2-over-2 rather than the canonical 3-over-3 alpha-helical sandwich fold []. This entry includes: HbN (or GlbN): a truncated haemoglobin-like protein that binds oxygen cooperatively with a very high affinity and a slow dissociation rate, which may exclude it from oxygen transport. It appears to be involved in bacterial nitric oxide detoxification and in nitrosative stress []. Cyanoglobin (or GlbN): a truncated haemoprotein found in cyanobacteria that has high oxygen affinity, and which appears to serve as part of a terminal oxidase, rather than as a respiratory pigment []. HbO (or GlbO): a truncated haemoglobin-like protein with a lower oxygen affinity than HbN. HbO associates with the bacterial cell membrane, where it significantly increases oxygen uptake over membranes lacking this protein. HbO appears to interact with a terminal oxidase, and could participate in an oxygen/electron-transfer process that facilitates oxygen transfer during aerobic metabolism []. Glb3: a nuclear-encoded truncated haemoglobin from plants that appears more closely related to HbO than HbN. Glb3 from Arabidopsis thaliana (Mouse-ear cress) exhibits an unusual concentration-independent binding of oxygen and carbon dioxide []. ; GO: 0019825 oxygen binding, 0015671 oxygen transport; PDB: 2BKM_B 1UVY_A 1DLW_A 2XYK_B 2IG3_A 2GKM_B 1S61_A 1S56_B 1RTE_B 2GLN_A ....
Probab=29.35 E-value=1.8e+02 Score=22.90 Aligned_cols=67 Identities=7% Similarity=0.020 Sum_probs=42.1
Q ss_pred hhHhhcCCCCChhhHH---HHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Q 023635 117 AIYDVFNLEKTFRMTF---SLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFY 193 (279)
Q Consensus 117 ~fY~~~glpDTF~~rF---~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~f~~Dve~rlRe~GV~~~v~K~mK~l~~~fy 193 (279)
.|...+|=|..+.++. .|...|. +-.+...-||.+-..+...|.++||+....+.+....+.+.
T Consensus 48 fl~~~~GGp~~Y~~~~G~p~m~~~H~-------------~l~it~~~f~~~~~~~~~al~~~~v~~~~~~~~~~~~~~~~ 114 (120)
T PF01152_consen 48 FLSQLLGGPPLYTGRDGHPMMREAHA-------------HLGITEEHFDRWLELLKQALDELGVPEELIDELLARLESLR 114 (120)
T ss_dssp HHHHHTTSSSHHHHHHSSH-HHHHHT-------------TS-BBHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcccCCCchHHHHHh-------------CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 4445666666666543 2444443 22366778999999999999999998544555555555554
Q ss_pred HHH
Q 023635 194 GNI 196 (279)
Q Consensus 194 G~~ 196 (279)
+.+
T Consensus 115 ~~i 117 (120)
T PF01152_consen 115 DDI 117 (120)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
No 8
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=22.36 E-value=4.6e+02 Score=26.28 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHhc-C----------chhHHHHHHHHHHH-----HHHHHHHHHHhhCCCCChHHHHHHHHHHhc
Q 023635 158 QYLYEIYNHDVEMRVSKAG-V----------NLLLSKWMKELEKI-----FYGNIVAFDAALLPEAKQDELQNVIWRNIF 221 (279)
Q Consensus 158 Q~L~D~f~~Dve~rlRe~G-V----------~~~v~K~mK~l~~~-----fyG~~~aYDeaL~~~d~d~~LA~ALwRNvf 221 (279)
..++|.++..++..+.+.| + ...+.+++..+.+. |--.+.+|=.|...+ |.+++++++|=+-
T Consensus 121 ~~ild~wi~~~~~~~~~~~~~~~~~~~~~~v~~~I~~~L~~l~~~~~~~~Fa~~l~~Y~~a~~~g--d~~~~~~~l~WL~ 198 (416)
T PF10923_consen 121 RSILDRWIYNLEEEVAAEGGIEPDEGFEEAVEELIEERLASLSELVHGPDFAAALRAYYRAYVEG--DEELADAALRWLR 198 (416)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHcccCChhHHHHHHHHHHHHhcC--CHHHHHHHHHHHc
Confidence 4455555555555555433 1 12445555555554 666777898898766 6899999999876
Q ss_pred cC
Q 023635 222 SD 223 (279)
Q Consensus 222 ~~ 223 (279)
++
T Consensus 199 Ge 200 (416)
T PF10923_consen 199 GE 200 (416)
T ss_pred CC
Confidence 54
No 9
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=20.78 E-value=3e+02 Score=28.83 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHhhhhccCc----------hhhhhHHHHHHHHHHhcCChhhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhh
Q 023635 85 ILKLMLFYSKQS----------KSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGV 154 (279)
Q Consensus 85 ~~kl~g~~sk~s----------~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~ 154 (279)
-.++|||=...+ .+..+.-+||..|+. .+-|. |.+ .++.-+=..|=|..+.|+......-.
T Consensus 450 ~~k~mGyk~~d~nk~Eqnd~YleRm~Gi~rLYAAIi~-l~~p~-----~~~---~~~hpf~i~~gW~wLA~iln~~p~~~ 520 (591)
T KOG2412|consen 450 YQKMMGYKAWDSNKWEQNDAYLERMDGIMRLYAAIIQ-LDIPV-----GNA---TNVHPFGINHGWAWLARILNKIPLLD 520 (591)
T ss_pred HHHhhcccccccccccccchHHHHhHhHHHHHHHHHH-hcccc-----cCC---CCCCcchhhcccHHHHHHhCCCCccc
Confidence 357888766656 334456799998763 33331 122 23334456899999999988765433
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhcCchhHHHHHHHH----HHHHHHHHHHHHHhhCCCCChHHHHHHHHHHh
Q 023635 155 ELGQYLYEIYNHDVEMRVS-KAGVNLLLSKWMKEL----EKIFYGNIVAFDAALLPEAKQDELQNVIWRNI 220 (279)
Q Consensus 155 ~l~Q~L~D~f~~Dve~rlR-e~GV~~~v~K~mK~l----~~~fyG~~~aYDeaL~~~d~d~~LA~ALwRNv 220 (279)
..-.|...||+-.-..+- ..|+ +-.+| .+.|.+++.||+++=. --....|++.+=|++
T Consensus 521 -~tatll~s~Lq~aG~~L~q~Yg~------Qf~Klli~i~E~y~~r~~a~~~~g~-~rl~ill~~~l~~q~ 583 (591)
T KOG2412|consen 521 -TTATLLNSFLQTAGFGLLQRYGS------QFLKLLILIREHYLPRLAAKKDTGD-LRLRILLEAWLDRQY 583 (591)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhccccccc-hHHHHHHHHHHHhhh
Confidence 334444445443333222 2343 33332 5888888888876421 001245566664443
No 10
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=20.19 E-value=1.6e+02 Score=22.02 Aligned_cols=43 Identities=19% Similarity=0.237 Sum_probs=29.5
Q ss_pred HHHHHhcCc-hhHHHHHHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHH
Q 023635 170 MRVSKAGVN-LLLSKWMKELEKIFYGNIVAFDAALLPEAKQDELQNVIW 217 (279)
Q Consensus 170 ~rlRe~GV~-~~v~K~mK~l~~~fyG~~~aYDeaL~~~d~d~~LA~ALw 217 (279)
..|+.+|+. ..|..-+++|.+.|- .|..+..++.=.+|++||.
T Consensus 16 dam~~lG~~~~~v~~vl~~LL~lY~-----~nW~lIEed~Y~~L~dai~ 59 (65)
T PF10440_consen 16 DAMRQLGFSKKQVRPVLKNLLKLYD-----GNWELIEEDNYRVLADAIF 59 (65)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHc-----CCchhhhcccHHHHHHHHH
Confidence 457889998 788888899988653 3344554443467887774
Done!