Query 023635
Match_columns 279
No_of_seqs 131 out of 305
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 10:13:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023635.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023635hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u66_A SCIP/TSSL, putative typ 49.8 72 0.0025 26.9 8.4 84 134-224 11-101 (183)
2 2ksc_A Cyanoglobin; hemeprotei 26.0 1.4E+02 0.0046 22.8 5.8 59 117-185 49-107 (123)
3 2r25_A Phosphorelay intermedia 14.3 3.7E+02 0.013 22.3 6.3 46 154-199 25-73 (167)
4 4gnt_B Carbohydrate-responsive 13.6 91 0.0031 18.1 1.5 14 210-223 4-17 (26)
5 3f7w_A Putative fructosamine-3 13.3 1.3E+02 0.0046 25.5 3.4 29 121-149 244-272 (288)
6 2bmm_A Thermostable hemoglobin 13.0 1.3E+02 0.0044 22.7 2.9 25 156-180 78-102 (123)
7 1s69_A Cyanoglobin, hemoglobin 11.7 3.6E+02 0.012 20.1 5.1 23 156-178 79-101 (124)
8 3us6_A Histidine-containing ph 11.1 4.8E+02 0.016 20.7 5.9 46 153-198 38-87 (153)
9 1vej_A Riken cDNA 4931431F19; 9.9 1.9E+02 0.0066 20.9 2.7 8 88-95 38-45 (74)
10 2zrr_A Mundticin KS immunity p 9.6 5.2E+02 0.018 20.4 5.3 87 87-190 22-110 (118)
No 1
>3u66_A SCIP/TSSL, putative type VI secretion protein; duble helical bundle, protein secretion, attached to inner M unknown function; 2.63A {Escherichia coli}
Probab=49.78 E-value=72 Score=26.86 Aligned_cols=84 Identities=14% Similarity=0.244 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhhcCc--hhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhhCCCC----
Q 023635 134 LLVLHMWFCLRRLKEEGK--EGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYGNIVAFDAALLPEA---- 207 (279)
Q Consensus 134 ~~~LHvWLll~RLr~eg~--~G~~l~Q~L~D~f~~Dve~rlRe~GV~~~v~K~mK~l~~~fyG~~~aYDeaL~~~d---- 207 (279)
-+..-+|++..+||.... ++..+.+.+.+ ..+++|..+++.|+. -..+....|.-|...||++....
T Consensus 11 ~l~~~~l~lv~~Lr~~~~~~d~~~lr~~~~~-~i~~~e~~~~~~g~~------~~~i~~a~YalCa~lDE~vl~~~w~~~ 83 (183)
T 3u66_A 11 QIFYPGWLMVSQLRSGQPVEDGKALYRRACQ-LVKQAREELAEAGFS------QKSSDIMLYAFCALLDESVLNREKTDD 83 (183)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHH-HHHHHHHHHHHTTCC------HHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHHHHHHHHHHCCCC------HHHHHHhHHHHHHHHHHHHhcCCCCCc
Confidence 455678999999998763 45667776554 457889999999995 34566788999999999987541
Q ss_pred -ChHHHHHHHHHHhccCC
Q 023635 208 -KQDELQNVIWRNIFSDD 224 (279)
Q Consensus 208 -~d~~LA~ALwRNvf~~~ 224 (279)
...-...-|-..+|+..
T Consensus 84 ~~~~W~~~~L~~~ff~~~ 101 (183)
T 3u66_A 84 GWRTWQQDPLQAHFFGTL 101 (183)
T ss_dssp -CCHHHHSCHHHHHHSCS
T ss_pred ccchhhhCcHHHHHcCCC
Confidence 11233334445556543
No 2
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=26.05 E-value=1.4e+02 Score=22.77 Aligned_cols=59 Identities=14% Similarity=0.121 Sum_probs=39.8
Q ss_pred hhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH
Q 023635 117 AIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNHDVEMRVSKAGVNLLLSKWM 185 (279)
Q Consensus 117 ~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~f~~Dve~rlRe~GV~~~v~K~m 185 (279)
+|..-+|=|+++.++ .|-.-|.=+. + +..+..+-||.+...+...|.+.|++......+
T Consensus 49 Fl~~~~GGp~~Y~g~-~m~~~H~~~~-----~----~~~I~~~~fd~wl~~~~~al~e~~~~~~~~~~l 107 (123)
T 2ksc_A 49 FMTYAFGGTDRFPGR-SMRAAHQDLV-----E----NAGLTDVHFDAIAENLVLTLQELNVSQDLIDEV 107 (123)
T ss_dssp HHHHHTTCTTSCCST-HHHHHHHHHH-----H----HSCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCCCCCCCCC-CHHHHHHhhc-----c----cCCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 555677788888886 4444555222 1 123678889999999999999999974333333
No 3
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A
Probab=14.28 E-value=3.7e+02 Score=22.30 Aligned_cols=46 Identities=9% Similarity=0.071 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCc---hhHHHHHHHHHHHHHHHHHHH
Q 023635 154 VELGQYLYEIYNHDVEMRVSKAGVN---LLLSKWMKELEKIFYGNIVAF 199 (279)
Q Consensus 154 ~~l~Q~L~D~f~~Dve~rlRe~GV~---~~v~K~mK~l~~~fyG~~~aY 199 (279)
..+.+.|+..|++|.+.+|.++.-- ..=-+.+..+..++-|....+
T Consensus 25 p~Fv~elV~~F~edse~~l~~L~~AL~~~~D~~~L~~~aH~LKGSSAnL 73 (167)
T 2r25_A 25 SDFSKGLIIQFIDQAQTTFAQMQRQLDGEKNLTELDNLGHFLKGSSAAL 73 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHhcccCHHHHHHHHHhhhhhHHHH
Confidence 6799999999999999999875432 122367778888888887764
No 4
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=13.57 E-value=91 Score=18.13 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhccC
Q 023635 210 DELQNVIWRNIFSD 223 (279)
Q Consensus 210 ~~LA~ALwRNvf~~ 223 (279)
-.|-.||||-.|.+
T Consensus 4 irlnnaiwrawyiq 17 (26)
T 4gnt_B 4 IRLNNAIWRAWYIQ 17 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHH
Confidence 57899999998853
No 5
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=13.26 E-value=1.3e+02 Score=25.51 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=23.9
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHhhc
Q 023635 121 VFNLEKTFRMTFSLLVLHMWFCLRRLKEE 149 (279)
Q Consensus 121 ~~glpDTF~~rF~~~~LHvWLll~RLr~e 149 (279)
...+++.|..|..+..||-+|.+..|=..
T Consensus 244 ~~pl~~~~~~R~~ly~ly~~l~h~~~fg~ 272 (288)
T 3f7w_A 244 VAPLAEGWRARIPLHQLHPLLVHVCLFGA 272 (288)
T ss_dssp HSCCCTTHHHHHHHHHHHHHHHHHHHHCG
T ss_pred hCCCCcCHHHHHHHHHHHHHHHHHHHhCh
Confidence 34588999999999999998888887543
No 6
>2bmm_A Thermostable hemoglobin from thermobifida fusca; bacterial hemoglobin, thermostable protein, oxygen storage/transport; HET: HEM; 2.48A {Thermobifida fusca}
Probab=12.98 E-value=1.3e+02 Score=22.74 Aligned_cols=25 Identities=8% Similarity=0.077 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCchh
Q 023635 156 LGQYLYEIYNHDVEMRVSKAGVNLL 180 (279)
Q Consensus 156 l~Q~L~D~f~~Dve~rlRe~GV~~~ 180 (279)
+..+-||.....+...|.+.|++.-
T Consensus 78 I~~~~f~~wl~~~~~al~e~~~~~~ 102 (123)
T 2bmm_A 78 IGAEERDRWLTHMRAAVDDLALPAH 102 (123)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCHH
Confidence 6678889999999999999998743
No 7
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=11.67 E-value=3.6e+02 Score=20.14 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCc
Q 023635 156 LGQYLYEIYNHDVEMRVSKAGVN 178 (279)
Q Consensus 156 l~Q~L~D~f~~Dve~rlRe~GV~ 178 (279)
+..+-||.+-..+...|.+.|++
T Consensus 79 I~~~~f~~wl~~l~~al~e~~~~ 101 (124)
T 1s69_A 79 LNGEHFDAVAEDLLATLKEMGVP 101 (124)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHHHHcCCC
Confidence 66778888888888888888886
No 8
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=11.08 E-value=4.8e+02 Score=20.73 Aligned_cols=46 Identities=13% Similarity=0.045 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCchh----HHHHHHHHHHHHHHHHHH
Q 023635 153 GVELGQYLYEIYNHDVEMRVSKAGVNLL----LSKWMKELEKIFYGNIVA 198 (279)
Q Consensus 153 G~~l~Q~L~D~f~~Dve~rlRe~GV~~~----v~K~mK~l~~~fyG~~~a 198 (279)
+..+.+.+++.|++|.+..+..+.-... =-+.+..+....-|....
T Consensus 38 ~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~LKGss~~ 87 (153)
T 3us6_A 38 NPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQFKGSSAS 87 (153)
T ss_dssp BTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999987543211 124455666655565544
No 9
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=9.87 E-value=1.9e+02 Score=20.86 Aligned_cols=8 Identities=13% Similarity=0.272 Sum_probs=4.6
Q ss_pred HhhhhccC
Q 023635 88 LMLFYSKQ 95 (279)
Q Consensus 88 l~g~~sk~ 95 (279)
-|||..++
T Consensus 38 eMGF~dr~ 45 (74)
T 1vej_A 38 ALGFANRD 45 (74)
T ss_dssp HHTCCCHH
T ss_pred HcCCCcHH
Confidence 37875433
No 10
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=9.62 E-value=5.2e+02 Score=20.44 Aligned_cols=87 Identities=23% Similarity=0.263 Sum_probs=51.6
Q ss_pred HHhhhhccCchhhhhHHHHHHHHHHhcCChhhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHH
Q 023635 87 KLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEIYNH 166 (279)
Q Consensus 87 kl~g~~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~f~~ 166 (279)
+-+.||+-.+.+.+.|-.+-..+++......= .+. +. -+|+ -....|+..+.. .=.|...|.-
T Consensus 22 ~~LKWFsGGkER~~~Ai~II~~Ll~~l~~~~~---------~~~-Lk-~vL~--~Y~~ELk~~~tS----vPfILSRMNl 84 (118)
T 2zrr_A 22 SNLKWFSGGDDRRKKAEVIITELLDDLEIDLG---------NES-LR-KVLG--SYLKKLKNEGTS----VPLVLSRMNI 84 (118)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHCSCSS---------SHH-HH-HHHH--HHHHHHHHCCSC----HHHHHHHHHH
T ss_pred ccceeccCCHHHHHHHHHHHHHHHHHhccCCc---------cch-HH-HHHH--HHHHHHhcCCCC----chhHHHHhhH
Confidence 34789999998888898888888876653211 111 11 1222 234556666542 2467889999
Q ss_pred HHHHHHHHhcCc--hhHHHHHHHHHH
Q 023635 167 DVEMRVSKAGVN--LLLSKWMKELEK 190 (279)
Q Consensus 167 Dve~rlRe~GV~--~~v~K~mK~l~~ 190 (279)
|+-.-|++-+|. ..-.++||+|.+
T Consensus 85 dIS~vL~~n~I~LS~~qs~~LK~Lr~ 110 (118)
T 2zrr_A 85 EISNAIKKDGVSLNENQSKKLKELMS 110 (118)
T ss_dssp HHHHHHTTTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCcccCHHHHHHHHHHHH
Confidence 999999999996 456677777754
Done!