Query 023635
Match_columns 279
No_of_seqs 131 out of 305
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 10:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023635.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023635hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlwa_ a.1.1.1 (A:) Protozoan 26.8 25 0.0018 24.8 3.5 41 154-194 71-111 (116)
2 d1ngna_ a.96.1.2 (A:) Mismatch 23.7 1E+02 0.0076 22.6 6.9 70 78-192 18-87 (144)
3 d2r25a1 a.24.10.2 (A:2-167) Ph 15.9 86 0.0063 23.5 4.8 32 145-176 15-46 (166)
4 d1ntca_ a.4.1.12 (A:) DNA-bind 13.9 1.1E+02 0.0082 20.3 4.5 18 172-189 71-89 (91)
5 d1b8da_ a.1.1.3 (A:) Phycoeryt 13.5 47 0.0034 25.6 2.5 64 87-174 26-92 (164)
6 d1idra_ a.1.1.1 (A:) Protozoan 12.8 70 0.0051 22.7 3.2 24 156-179 85-108 (127)
7 d1etxa_ a.4.1.12 (A:) FIS prot 12.1 1E+02 0.0076 20.9 3.9 20 169-188 66-86 (89)
8 d2io8a3 d.142.1.8 (A:201-378,A 11.8 74 0.0054 27.0 3.5 34 98-131 63-100 (297)
9 d2jn6a1 a.4.1.19 (A:1-89) Unch 9.9 70 0.0051 21.4 2.2 16 173-188 31-47 (89)
10 d1dlya_ a.1.1.1 (A:) Protozoan 9.6 1.2E+02 0.0086 20.7 3.5 25 155-179 74-98 (121)
No 1
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=26.81 E-value=25 Score=24.77 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Q 023635 154 VELGQYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIFYG 194 (279)
Q Consensus 154 ~~l~Q~L~D~f~~Dve~rlRe~GV~~~v~K~mK~l~~~fyG 194 (279)
..+...-||.+-..+...+++.||+.-..+.+....+...+
T Consensus 71 ~~I~~~~fd~~~~~l~~al~e~~v~~~~~~e~~~~~~~lr~ 111 (116)
T d1dlwa_ 71 MGVSNAQFTTVIGHLRSALTGAGVAAALVEQTVAVAETVRG 111 (116)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 34778889999999999999999985444444444444433
No 2
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.75 E-value=1e+02 Score=22.60 Aligned_cols=70 Identities=14% Similarity=0.080 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHhhhhccCchhhhhHHHHHHHHHHhcCChhhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHH
Q 023635 78 YEGIKRFILKLMLFYSKQSKSIRGANVIYKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELG 157 (279)
Q Consensus 78 ~~g~~~~~~kl~g~~sk~s~~~r~a~~LY~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~ 157 (279)
.+.+..++.-+|+ +.+....+...|....+....+
T Consensus 18 ~dPf~~LV~~ILs----qqT~~~~v~~v~~~L~~~~pt~----------------------------------------- 52 (144)
T d1ngna_ 18 HDPWKLLIATIFL----NRTSGKMAIPVLWEFLEKYPSA----------------------------------------- 52 (144)
T ss_dssp TSHHHHHHHHHHH----TTSCHHHHHHHHHHHHHHSCSH-----------------------------------------
T ss_pred CCHHHHHHHHHHH----ccCCHHHHHHHHHHHHHhCCch-----------------------------------------
Confidence 3457777777777 4445566677777765433221
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 023635 158 QYLYEIYNHDVEMRVSKAGVNLLLSKWMKELEKIF 192 (279)
Q Consensus 158 Q~L~D~f~~Dve~rlRe~GV~~~v~K~mK~l~~~f 192 (279)
+.|-+.=.++++.-|+..|....-.|+++++.+.+
T Consensus 53 e~la~a~~~el~~~Ir~~G~~~~KAk~I~~~a~~~ 87 (144)
T d1ngna_ 53 EVARAADWRDVSELLKPLGLYDLRAKTIIKFSDEY 87 (144)
T ss_dssp HHHHHSCHHHHHHHTGGGSCHHHHHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHhhhhHHHHHHHHHHHHhhH
Confidence 33334445566666776666545567777777655
No 3
>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.93 E-value=86 Score=23.54 Aligned_cols=32 Identities=3% Similarity=0.092 Sum_probs=24.3
Q ss_pred HHhhcCchhhHHHHHHHHHHHHHHHHHHHHhc
Q 023635 145 RLKEEGKEGVELGQYLYEIYNHDVEMRVSKAG 176 (279)
Q Consensus 145 RLr~eg~~G~~l~Q~L~D~f~~Dve~rlRe~G 176 (279)
-|....++...+.+.|++.|+++.+..+.++.
T Consensus 15 ~l~~m~~~d~~f~~~li~~F~~~~~~~~~~l~ 46 (166)
T d2r25a1 15 EIISMDDDDSDFSKGLIIQFIDQAQTTFAQMQ 46 (166)
T ss_dssp HHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443444678999999999999999887653
No 4
>d1ntca_ a.4.1.12 (A:) DNA-binding domain of NTRC {Salmonella typhimurium [TaxId: 90371]}
Probab=13.86 E-value=1.1e+02 Score=20.34 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.1
Q ss_pred HHHhcCc-hhHHHHHHHHH
Q 023635 172 VSKAGVN-LLLSKWMKELE 189 (279)
Q Consensus 172 lRe~GV~-~~v~K~mK~l~ 189 (279)
-+.+||+ .++.++||++.
T Consensus 71 A~~LGI~R~TL~~Klk~~g 89 (91)
T d1ntca_ 71 ARLLGWGAATLTAKLKELG 89 (91)
T ss_dssp HHHTTCCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHC
Confidence 3457898 78999999874
No 5
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga (Griffithsia monilis) [TaxId: 42003]}
Probab=13.51 E-value=47 Score=25.63 Aligned_cols=64 Identities=8% Similarity=0.024 Sum_probs=44.1
Q ss_pred HHhhhhccCchhhhhHHHH---HHHHHHhcCChhhHhhcCCCCChhhHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHH
Q 023635 87 KLMLFYSKQSKSIRGANVI---YKRVVSQVDKPAIYDVFNLEKTFRMTFSLLVLHMWFCLRRLKEEGKEGVELGQYLYEI 163 (279)
Q Consensus 87 kl~g~~sk~s~~~r~a~~L---Y~~iv~qar~p~fY~~~glpDTF~~rF~~~~LHvWLll~RLr~eg~~G~~l~Q~L~D~ 163 (279)
.+-+|+...+.+.+.++.| ...||+++.+..|-+. |+. - .+.|....+.-.+.
T Consensus 26 ~l~~~~~~~~~Rl~aa~~L~~na~~IV~~A~~~l~~~~---P~l-------------------~--~~gg~~y~~~r~~~ 81 (164)
T d1b8da_ 26 SIQGNIQRAAARLEAAQKLSGNHEAVVKEAGDACFAKY---SYL-------------------K--NAGEAGDSPEKINK 81 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---GGG-------------------G--STTSTTSSHHHHHH
T ss_pred HHHHHHHchHHhHHHHHHHHHhHHHHHHHHHHHHHHHC---cCC-------------------C--CCCCCcccHHHHHH
Confidence 4556777777777777777 7788888776655322 221 1 23355677888899
Q ss_pred HHHHHHHHHHH
Q 023635 164 YNHDVEMRVSK 174 (279)
Q Consensus 164 f~~Dve~rlRe 174 (279)
.|+|++.-||-
T Consensus 82 C~RD~~~~LR~ 92 (164)
T d1b8da_ 82 CYRDIDHYMRL 92 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999995
No 6
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=12.84 E-value=70 Score=22.71 Aligned_cols=24 Identities=13% Similarity=0.180 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCch
Q 023635 156 LGQYLYEIYNHDVEMRVSKAGVNL 179 (279)
Q Consensus 156 l~Q~L~D~f~~Dve~rlRe~GV~~ 179 (279)
+...-||.+-..+...|++.||+.
T Consensus 85 I~~~~f~~~~~~l~~al~e~~v~~ 108 (127)
T d1idra_ 85 ITMHHFSLVAGHLADALTAAGVPS 108 (127)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCH
Confidence 667778999999999999999984
No 7
>d1etxa_ a.4.1.12 (A:) FIS protein {Escherichia coli [TaxId: 562]}
Probab=12.11 E-value=1e+02 Score=20.87 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=14.2
Q ss_pred HHHHHHhcCc-hhHHHHHHHH
Q 023635 169 EMRVSKAGVN-LLLSKWMKEL 188 (279)
Q Consensus 169 e~rlRe~GV~-~~v~K~mK~l 188 (279)
-..-+.+|++ .++.++||++
T Consensus 66 ~~aA~~LGisR~tL~~klk~~ 86 (89)
T d1etxa_ 66 TRAALMMGINRGTLRKKLKKY 86 (89)
T ss_dssp HHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHh
Confidence 3344557888 7888888875
No 8
>d2io8a3 d.142.1.8 (A:201-378,A:497-615) Glutathionylspermidine synthase, synthetase domain {Escherichia coli [TaxId: 562]}
Probab=11.80 E-value=74 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.207 Sum_probs=26.8
Q ss_pred hhhhHHHHHHHHHHhc----CChhhHhhcCCCCChhhH
Q 023635 98 SIRGANVIYKRVVSQV----DKPAIYDVFNLEKTFRMT 131 (279)
Q Consensus 98 ~~r~a~~LY~~iv~qa----r~p~fY~~~glpDTF~~r 131 (279)
..++++.|+..|++.+ +++.++..||+|..+...
T Consensus 63 l~~at~ELh~m~l~a~~~vv~~~~ll~~lgIP~~~~~~ 100 (297)
T d2io8a3 63 LIKATNELHLMYLHATDKVLKDDNLLALFDIPKILWPR 100 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHGGGCCCGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHcCCCHHHHHH
Confidence 3467789999998865 377899999999987654
No 9
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762 {Corynebacterium glutamicum [TaxId: 1718]}
Probab=9.91 E-value=70 Score=21.42 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=13.3
Q ss_pred HHhcCc-hhHHHHHHHH
Q 023635 173 SKAGVN-LLLSKWMKEL 188 (279)
Q Consensus 173 Re~GV~-~~v~K~mK~l 188 (279)
+++||+ .++.+|++++
T Consensus 31 ~~lGIs~~tl~~W~k~~ 47 (89)
T d2jn6a1 31 NDLGINRVTLKNWIIKY 47 (89)
T ss_dssp HHHTSCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 467998 7899999975
No 10
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=9.62 E-value=1.2e+02 Score=20.72 Aligned_cols=25 Identities=12% Similarity=0.231 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCch
Q 023635 155 ELGQYLYEIYNHDVEMRVSKAGVNL 179 (279)
Q Consensus 155 ~l~Q~L~D~f~~Dve~rlRe~GV~~ 179 (279)
.+...-||.+-..+...|+++||+.
T Consensus 74 ~i~~~~f~~~~~~l~~al~~~~v~~ 98 (121)
T d1dlya_ 74 HLSDVHFQAVARHLSDTLTELGVPP 98 (121)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCH
Confidence 3667778999999999999999974
Done!