Query 023637
Match_columns 279
No_of_seqs 132 out of 250
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:14:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l8s_A Integrin alpha-1; trans 65.1 10 0.00035 27.0 4.6 42 11-56 5-48 (54)
2 2knc_A Integrin alpha-IIB; tra 60.9 19 0.00064 25.5 5.4 37 11-48 8-44 (54)
3 2k1a_A Integrin alpha-IIB; sin 57.3 15 0.00051 24.7 4.1 36 11-47 6-41 (42)
4 2knc_B Integrin beta-3; transm 41.1 34 0.0012 25.6 4.3 22 189-210 41-62 (79)
5 1rh4_A Right-handed coiled coi 30.5 34 0.0011 21.8 2.3 16 47-62 18-33 (35)
6 2uwj_E Type III export protein 29.6 28 0.00094 26.0 2.1 33 32-64 8-40 (70)
7 2jwa_A Receptor tyrosine-prote 28.4 48 0.0016 22.5 3.0 30 15-49 12-41 (44)
8 1uii_A Geminin; human, DNA rep 21.9 64 0.0022 24.7 2.9 15 42-56 32-46 (83)
9 1zke_A Hypothetical protein HP 21.0 15 0.00051 28.1 -0.8 18 49-66 65-82 (83)
10 3sok_A Fimbrial protein; pilus 20.4 1.8E+02 0.0062 23.2 5.7 42 21-62 6-47 (151)
No 1
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=65.13 E-value=10 Score=26.95 Aligned_cols=42 Identities=21% Similarity=0.434 Sum_probs=21.2
Q ss_pred ccCCchhhH--HHHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHH
Q 023637 11 EETPTWAVA--VVCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALE 56 (279)
Q Consensus 11 e~TPTWaVA--~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALe 56 (279)
+..|.|.+. +++.+++ ++ ++=-++-++| +|||+++ +..+.||
T Consensus 5 ~~vp~WiIi~svl~GLLL-L~-Lii~~LwK~G-FFKR~~~-~~~~~~~ 48 (54)
T 2l8s_A 5 GRVPLWVILLSAFAGLLL-LM-LLILALWKIG-FFKRPLK-KKMEKLE 48 (54)
T ss_dssp CCCCTHHHHHHHHHHHHH-HH-HHHHHHHHHH-HTTSCCS-CCCCC--
T ss_pred ccCchHHHHHHHHHHHHH-HH-HHHHHHHHcC-cccCCCc-chhhHHh
Confidence 358999643 3333332 22 3334666776 7777654 4444444
No 2
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=60.94 E-value=19 Score=25.53 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=20.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcc
Q 023637 11 EETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHK 48 (279)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~k 48 (279)
+..|.|.+.+-...-+++-.++=-++.++| +|||+++
T Consensus 8 ~~vp~wiIi~svl~GLllL~li~~~LwK~G-FFkR~~~ 44 (54)
T 2knc_A 8 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNRP 44 (54)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTTCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCCC
Confidence 358999644333323333333445677777 7777664
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=57.31 E-value=15 Score=24.71 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=18.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhc
Q 023637 11 EETPTWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKH 47 (279)
Q Consensus 11 e~TPTWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~ 47 (279)
+..|.|.+.+-...-+++-.++=-++.++| +|||++
T Consensus 6 ~~vp~wiIi~s~l~GLllL~li~~~LwK~G-FFkR~~ 41 (42)
T 2k1a_A 6 RAIPIWWVLVGVLGGLLLLTILVLAMWKVG-FFKRNR 41 (42)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHTT-TTCCCC
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCC
Confidence 358999643322222222233345667776 666654
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=41.08 E-value=34 Score=25.61 Aligned_cols=22 Identities=23% Similarity=0.527 Sum_probs=16.3
Q ss_pred hhhhHHHhhhhhccccccCCCC
Q 023637 189 MKKWKKWEKETRTIDYQFSHDP 210 (279)
Q Consensus 189 ir~Wk~WE~e~~~~~~~~~~~p 210 (279)
-|.++++|+|-++...+..++|
T Consensus 41 rrE~~kFEkE~~~~~w~~~~NP 62 (79)
T 2knc_B 41 RKEFAKFEEERARAKWDTANNP 62 (79)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHhcccccCCCC
Confidence 6899999999776655544555
No 5
>1rh4_A Right-handed coiled coil tetramer; de novo design; 1.90A {Synthetic construct} SCOP: k.17.1.1
Probab=30.49 E-value=34 Score=21.82 Aligned_cols=16 Identities=44% Similarity=0.580 Sum_probs=12.8
Q ss_pred cchHHHHHHHHHHHHH
Q 023637 47 HKRALYEALEKIKSEL 62 (279)
Q Consensus 47 ~kkaL~eALeKiK~EL 62 (279)
-|-..+.||.|||.|+
T Consensus 18 ikaeilaalkkikqei 33 (35)
T 1rh4_A 18 IKAEILAALKKIKQEI 33 (35)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3567889999999886
No 6
>2uwj_E Type III export protein PSCE; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=29.60 E-value=28 Score=25.98 Aligned_cols=33 Identities=18% Similarity=0.188 Sum_probs=23.9
Q ss_pred HHHHHHHHHhHhhhhcchHHHHHHHHHHHHHHH
Q 023637 32 IEHIIHLIGKWLTKKHKRALYEALEKIKSELML 64 (279)
Q Consensus 32 ~Er~lH~lgk~Lkk~~kkaL~eALeKiK~ELML 64 (279)
+|..|+-.+.-..+.=+..|..||-++|.+|++
T Consensus 8 LE~~L~~~~~~~~~~i~~~L~qAl~~vKrqL~~ 40 (70)
T 2uwj_E 8 LETRLSVADGTHAAALRQRLQAALAECRRELAR 40 (70)
T ss_dssp HHHHHTSSSTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555555445555566799999999999985
No 7
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=28.39 E-value=48 Score=22.52 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=15.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhcch
Q 023637 15 TWAVAVVCFVLVTISIIIEHIIHLIGKWLTKKHKR 49 (279)
Q Consensus 15 TWaVA~Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kk 49 (279)
|++.|.|..+++++-+.+ -++=|++|++++
T Consensus 12 ~~Ia~~vVGvll~vi~~l-----~~~~~~RRR~~~ 41 (44)
T 2jwa_A 12 TSIISAVVGILLVVVLGV-----VFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHCSC
T ss_pred cchHHHHHHHHHHHHHHH-----HHHhheehhhhh
Confidence 456666665443332222 235577777653
No 8
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.88 E-value=64 Score=24.71 Aligned_cols=15 Identities=47% Similarity=0.753 Sum_probs=10.3
Q ss_pred HhhhhcchHHHHHHH
Q 023637 42 WLTKKHKRALYEALE 56 (279)
Q Consensus 42 ~Lkk~~kkaL~eALe 56 (279)
-+..++|+||.+||+
T Consensus 32 ~lAE~RR~AL~eaL~ 46 (83)
T 1uii_A 32 EVAEKRRKALYEALK 46 (83)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345667778877776
No 9
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=20.96 E-value=15 Score=28.07 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 023637 49 RALYEALEKIKSELMLLG 66 (279)
Q Consensus 49 kaL~eALeKiK~ELMLLG 66 (279)
|....||.|+|.|+.+.|
T Consensus 65 Ke~IdaLNK~Kke~lv~~ 82 (83)
T 1zke_A 65 KELINALNKIKKGLLVFG 82 (83)
T ss_dssp HHHHHHHHHHHGGGCSTT
T ss_pred HHHHHHHHHHHHHHhhcC
Confidence 578899999999986654
No 10
>3sok_A Fimbrial protein; pilus subunit, extracellular, cell adhesion; 2.30A {Dichelobacter nodosus}
Probab=20.40 E-value=1.8e+02 Score=23.23 Aligned_cols=42 Identities=12% Similarity=0.251 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 023637 21 VCFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (279)
Q Consensus 21 Vc~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (279)
+..|+++|+|+.==.+-.+..+.++.+++.....+..++..+
T Consensus 6 llvviaIigiLaaia~p~~~~~~~~~~~~~~~~~~~~~~~a~ 47 (151)
T 3sok_A 6 LMIVVAIIGILAAFAIPAYNDYIARSQAAEGLTLADGLKVRI 47 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777778888888877665555555555443
Done!