Query 023637
Match_columns 279
No_of_seqs 132 out of 250
Neff 4.6
Searched_HMMs 13730
Date Mon Mar 25 10:15:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023637.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023637hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xrda1 f.3.1.1 (A:1-52) Light 20.4 23 0.0017 23.3 1.8 13 163-175 17-30 (52)
2 d2pila_ d.24.1.1 (A:) Pilin Gc 18.6 94 0.0069 21.4 5.3 37 22-58 7-43 (158)
3 d3b60a2 f.37.1.1 (A:10-328) Mu 18.4 99 0.0072 23.3 5.8 24 16-39 156-179 (319)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 17.1 39 0.0028 20.5 2.2 13 165-177 22-34 (37)
5 d1iwga8 f.35.1.1 (A:513-566,A: 15.5 96 0.007 24.4 5.1 56 18-73 111-178 (222)
6 d1zkea1 a.30.6.1 (A:1-79) Hypo 14.8 25 0.0019 24.7 1.0 15 49-63 63-77 (79)
7 d2gola1 a.61.1.1 (A:7-107) HIV 14.4 23 0.0017 26.2 0.8 12 50-61 90-101 (101)
8 d1j1va_ a.4.12.2 (A:) Chromoso 12.7 79 0.0058 21.9 3.4 31 32-62 45-75 (94)
9 d1h5oa_ g.9.1.2 (A:) Crotamine 11.4 47 0.0034 20.5 1.4 17 79-95 14-30 (42)
10 d2dy1a4 d.58.11.1 (A:378-454) 11.2 53 0.0038 22.1 1.8 17 45-61 15-31 (77)
No 1
>d1xrda1 f.3.1.1 (A:1-52) Light-harvesting complex subunits {Rhodospirillum rubrum [TaxId: 1085]}
Probab=20.42 E-value=23 Score=23.30 Aligned_cols=13 Identities=62% Similarity=1.058 Sum_probs=10.5
Q ss_pred HHHHHHHHHHH-HH
Q 023637 163 LHIFIFVLALF-HV 175 (279)
Q Consensus 163 LHIFIFVLAv~-HV 175 (279)
++.|.|+||++ |.
T Consensus 17 ~~~fL~~LAl~IHf 30 (52)
T d1xrda1 17 LATFLFVLALLIHF 30 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 68999999964 43
No 2
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=18.55 E-value=94 Score=21.37 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhcchHHHHHHHHH
Q 023637 22 CFVLVTISIIIEHIIHLIGKWLTKKHKRALYEALEKI 58 (279)
Q Consensus 22 c~v~V~iSl~~Er~lH~lgk~Lkk~~kkaL~eALeKi 58 (279)
..|+++|+|+.==++=.+.++.++.+++.....+.-+
T Consensus 7 lVViaIIgILaaia~P~~~~~~~~a~~~~~~~~l~~i 43 (158)
T d2pila_ 7 MIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQ 43 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666677777777777655544444433
No 3
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=18.44 E-value=99 Score=23.32 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 023637 16 WAVAVVCFVLVTISIIIEHIIHLI 39 (279)
Q Consensus 16 WaVA~Vc~v~V~iSl~~Er~lH~l 39 (279)
|.++.++.+++.+.+++-....+-
T Consensus 156 ~~l~li~l~~~~~~~~~~~~~~~~ 179 (319)
T d3b60a2 156 WQLSIILVVLAPIVSIAIRVVSKR 179 (319)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHHhhhhH
Confidence 667777777777777665544443
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.10 E-value=39 Score=20.53 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHH
Q 023637 165 IFIFVLALFHVLY 177 (279)
Q Consensus 165 IFIFVLAv~HV~y 177 (279)
.+||||||.--.|
T Consensus 22 Llifvl~vLFssY 34 (37)
T d2axtl1 22 LLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5899999876555
No 5
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=15.48 E-value=96 Score=24.37 Aligned_cols=56 Identities=21% Similarity=0.227 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhh--hcchHHHHHHHHHHHHH----------HHHHHHHHHHH
Q 023637 18 VAVVCFVLVTISIIIEHIIHLIGKWLTK--KHKRALYEALEKIKSEL----------MLLGFISLLLT 73 (279)
Q Consensus 18 VA~Vc~v~V~iSl~~Er~lH~lgk~Lkk--~~kkaL~eALeKiK~EL----------MLLGFISLLLt 73 (279)
+.+....++++++.+...+|.+..+.+. ++.++..||..+--+|- +++||++|++.
T Consensus 111 ~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~ 178 (222)
T d1iwga8 111 VYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIS 178 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhcccccchhhhhhhHHHHHHHHhccccccccCCHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhc
Confidence 4456677788999999999999988652 33344455544433332 37888888774
No 6
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=14.81 E-value=25 Score=24.72 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHH
Q 023637 49 RALYEALEKIKSELM 63 (279)
Q Consensus 49 kaL~eALeKiK~ELM 63 (279)
|+..+||.|+|.|+.
T Consensus 63 K~~IdaLNKiKke~l 77 (79)
T d1zkea1 63 KELINALNKIKKGLL 77 (79)
T ss_dssp HHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHh
Confidence 678899999999974
No 7
>d2gola1 a.61.1.1 (A:7-107) HIV-1 matrix protein (HIV-1 MA, HIVp17, p17, MA) {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=14.44 E-value=23 Score=26.19 Aligned_cols=12 Identities=50% Similarity=0.590 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 023637 50 ALYEALEKIKSE 61 (279)
Q Consensus 50 aL~eALeKiK~E 61 (279)
.=-|||+||+||
T Consensus 90 DTkEAl~kieee 101 (101)
T d2gola1 90 DTKEALDKIEEE 101 (101)
T ss_dssp BHHHHHHHHHHC
T ss_pred chHHHHHHHhcC
Confidence 346999999987
No 8
>d1j1va_ a.4.12.2 (A:) Chromosomal replication initiation factor DnaA C-terminal domain IV {Escherichia coli [TaxId: 562]}
Probab=12.69 E-value=79 Score=21.89 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=23.7
Q ss_pred HHHHHHHHHhHhhhhcchHHHHHHHHHHHHH
Q 023637 32 IEHIIHLIGKWLTKKHKRALYEALEKIKSEL 62 (279)
Q Consensus 32 ~Er~lH~lgk~Lkk~~kkaL~eALeKiK~EL 62 (279)
....+-.+|+.|..+.-.+...|+.|+++++
T Consensus 45 ~~~sl~~Ig~~fg~rdHsTV~~a~kki~~~~ 75 (94)
T d1j1va_ 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHhCCCCchHHHHHHHHHHHHH
Confidence 3446778899996655688999999998754
No 9
>d1h5oa_ g.9.1.2 (A:) Crotamine {South american rattlesnake (Crotalus durissus terrificus) [TaxId: 8732]}
Probab=11.36 E-value=47 Score=20.46 Aligned_cols=17 Identities=35% Similarity=0.577 Sum_probs=10.7
Q ss_pred ccccccccccccccccC
Q 023637 79 ISKICIPESVANTWHPC 95 (279)
Q Consensus 79 IskICIp~~~~~~mlPC 95 (279)
-.+||+|++-..--+.|
T Consensus 14 k~~iclppssd~gkmdc 30 (42)
T d1h5oa_ 14 KEKICLPPSSDFGKMDC 30 (42)
T ss_dssp TTSCCSSSSCBCCSSSS
T ss_pred cceeECCCccccccccC
Confidence 35799999854333345
No 10
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=11.19 E-value=53 Score=22.10 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=13.4
Q ss_pred hhcchHHHHHHHHHHHH
Q 023637 45 KKHKRALYEALEKIKSE 61 (279)
Q Consensus 45 k~~kkaL~eALeKiK~E 61 (279)
+.....|.+||+|+.+|
T Consensus 15 ~~d~~kl~~aL~~L~~e 31 (77)
T d2dy1a4 15 RTDEARLGEALRKLLEE 31 (77)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34456799999999987
Done!